Multiple sequence alignment - TraesCS2A01G530900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G530900 chr2A 100.000 4054 0 0 1 4054 748447956 748443903 0.000000e+00 7487
1 TraesCS2A01G530900 chr2B 94.414 2345 73 17 1766 4054 753799761 753802103 0.000000e+00 3552
2 TraesCS2A01G530900 chr2B 85.537 1535 89 60 289 1754 753798234 753799704 0.000000e+00 1482
3 TraesCS2A01G530900 chr2B 88.730 701 33 19 3112 3768 790454421 790453723 0.000000e+00 815
4 TraesCS2A01G530900 chr2D 94.022 2342 63 19 1770 4054 617896275 617893954 0.000000e+00 3478
5 TraesCS2A01G530900 chr2D 86.342 1501 67 71 289 1754 617897726 617896329 0.000000e+00 1509
6 TraesCS2A01G530900 chr7B 90.231 1300 112 11 1768 3055 745143452 745144748 0.000000e+00 1683
7 TraesCS2A01G530900 chr7B 88.968 698 30 16 3112 3765 382087448 382088142 0.000000e+00 819
8 TraesCS2A01G530900 chr7B 88.286 700 37 18 3112 3768 554075931 554075234 0.000000e+00 797
9 TraesCS2A01G530900 chr7B 79.464 336 47 8 980 1311 745141601 745141918 6.820000e-53 219
10 TraesCS2A01G530900 chr7D 90.046 1296 110 11 1768 3055 632162713 632163997 0.000000e+00 1661
11 TraesCS2A01G530900 chr7D 79.778 361 52 14 954 1311 632161826 632162168 4.050000e-60 243
12 TraesCS2A01G530900 chr1A 90.023 1293 110 10 1768 3055 6423492 6422214 0.000000e+00 1655
13 TraesCS2A01G530900 chr1A 81.818 308 37 8 1005 1311 6424451 6424162 1.460000e-59 241
14 TraesCS2A01G530900 chr6A 88.873 701 31 16 3112 3768 477476219 477475522 0.000000e+00 819
15 TraesCS2A01G530900 chr6A 88.555 699 32 16 3112 3765 239255946 239256641 0.000000e+00 804
16 TraesCS2A01G530900 chr4A 88.857 700 33 15 3112 3768 29478863 29478166 0.000000e+00 819
17 TraesCS2A01G530900 chr4A 88.395 698 34 16 3112 3765 51046127 51046821 0.000000e+00 797
18 TraesCS2A01G530900 chr6B 88.730 701 32 16 3112 3768 714157088 714156391 0.000000e+00 813
19 TraesCS2A01G530900 chr6B 88.682 698 32 16 3112 3765 40509770 40510464 0.000000e+00 808
20 TraesCS2A01G530900 chr1B 88.588 701 33 16 3112 3768 82988234 82987537 0.000000e+00 808
21 TraesCS2A01G530900 chr7A 88.092 697 38 18 3112 3765 687182844 687183538 0.000000e+00 785
22 TraesCS2A01G530900 chr3B 72.958 551 117 26 2276 2810 779528868 779528334 3.240000e-36 163
23 TraesCS2A01G530900 chr3D 72.807 456 94 23 2370 2810 582054310 582054750 1.180000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G530900 chr2A 748443903 748447956 4053 True 7487.0 7487 100.0000 1 4054 1 chr2A.!!$R1 4053
1 TraesCS2A01G530900 chr2B 753798234 753802103 3869 False 2517.0 3552 89.9755 289 4054 2 chr2B.!!$F1 3765
2 TraesCS2A01G530900 chr2B 790453723 790454421 698 True 815.0 815 88.7300 3112 3768 1 chr2B.!!$R1 656
3 TraesCS2A01G530900 chr2D 617893954 617897726 3772 True 2493.5 3478 90.1820 289 4054 2 chr2D.!!$R1 3765
4 TraesCS2A01G530900 chr7B 745141601 745144748 3147 False 951.0 1683 84.8475 980 3055 2 chr7B.!!$F2 2075
5 TraesCS2A01G530900 chr7B 382087448 382088142 694 False 819.0 819 88.9680 3112 3765 1 chr7B.!!$F1 653
6 TraesCS2A01G530900 chr7B 554075234 554075931 697 True 797.0 797 88.2860 3112 3768 1 chr7B.!!$R1 656
7 TraesCS2A01G530900 chr7D 632161826 632163997 2171 False 952.0 1661 84.9120 954 3055 2 chr7D.!!$F1 2101
8 TraesCS2A01G530900 chr1A 6422214 6424451 2237 True 948.0 1655 85.9205 1005 3055 2 chr1A.!!$R1 2050
9 TraesCS2A01G530900 chr6A 477475522 477476219 697 True 819.0 819 88.8730 3112 3768 1 chr6A.!!$R1 656
10 TraesCS2A01G530900 chr6A 239255946 239256641 695 False 804.0 804 88.5550 3112 3765 1 chr6A.!!$F1 653
11 TraesCS2A01G530900 chr4A 29478166 29478863 697 True 819.0 819 88.8570 3112 3768 1 chr4A.!!$R1 656
12 TraesCS2A01G530900 chr4A 51046127 51046821 694 False 797.0 797 88.3950 3112 3765 1 chr4A.!!$F1 653
13 TraesCS2A01G530900 chr6B 714156391 714157088 697 True 813.0 813 88.7300 3112 3768 1 chr6B.!!$R1 656
14 TraesCS2A01G530900 chr6B 40509770 40510464 694 False 808.0 808 88.6820 3112 3765 1 chr6B.!!$F1 653
15 TraesCS2A01G530900 chr1B 82987537 82988234 697 True 808.0 808 88.5880 3112 3768 1 chr1B.!!$R1 656
16 TraesCS2A01G530900 chr7A 687182844 687183538 694 False 785.0 785 88.0920 3112 3765 1 chr7A.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.037303 ATGGTGTGAGGTGCTTCTGG 59.963 55.000 0.00 0.00 0.00 3.86 F
600 632 0.040781 GCAATTTGTACACGTGGCGT 60.041 50.000 21.57 0.74 42.36 5.68 F
770 816 0.108041 CAATGCCATGCCCCAAGTTC 60.108 55.000 0.00 0.00 0.00 3.01 F
1568 1740 1.193644 CAACATATGCATGCACGCAC 58.806 50.000 25.37 0.00 46.56 5.34 F
1711 1926 1.944024 CTCTCTCTGCTACCTACGGTG 59.056 57.143 0.00 0.00 36.19 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1576 0.108615 CTAGCGTTACCAGCAGCAGT 60.109 55.000 0.0 0.0 37.01 4.40 R
1568 1740 1.057566 GCAATATTTGTTGTGCGTGCG 59.942 47.619 0.0 0.0 0.00 5.34 R
1704 1905 1.541147 TCGGACAAAGTACCACCGTAG 59.459 52.381 0.0 0.0 43.36 3.51 R
2915 4234 0.891373 ATAGCCCCATGACGATCTCG 59.109 55.000 0.0 0.0 46.33 4.04 R
3161 4491 1.359459 GATTGTTCGGTCGGTCCTGC 61.359 60.000 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.329545 TCAGCGGGTGTCCCAAGC 62.330 66.667 7.12 1.52 45.83 4.01
18 19 4.641645 CAGCGGGTGTCCCAAGCA 62.642 66.667 5.64 0.00 45.83 3.91
19 20 4.335647 AGCGGGTGTCCCAAGCAG 62.336 66.667 5.64 0.00 45.83 4.24
20 21 4.329545 GCGGGTGTCCCAAGCAGA 62.330 66.667 5.64 0.00 45.83 4.26
21 22 2.429930 CGGGTGTCCCAAGCAGAA 59.570 61.111 5.64 0.00 45.83 3.02
22 23 1.672356 CGGGTGTCCCAAGCAGAAG 60.672 63.158 5.64 0.00 45.83 2.85
23 24 1.303643 GGGTGTCCCAAGCAGAAGG 60.304 63.158 0.00 0.00 44.65 3.46
24 25 1.761174 GGTGTCCCAAGCAGAAGGA 59.239 57.895 0.00 0.00 0.00 3.36
25 26 0.329596 GGTGTCCCAAGCAGAAGGAT 59.670 55.000 0.00 0.00 30.92 3.24
26 27 1.457346 GTGTCCCAAGCAGAAGGATG 58.543 55.000 0.00 0.00 30.92 3.51
27 28 0.329261 TGTCCCAAGCAGAAGGATGG 59.671 55.000 0.00 0.00 30.92 3.51
28 29 4.672251 CCCAAGCAGAAGGATGGG 57.328 61.111 0.00 0.00 46.07 4.00
30 31 3.181526 CCAAGCAGAAGGATGGGAC 57.818 57.895 0.00 0.00 0.00 4.46
31 32 0.745845 CCAAGCAGAAGGATGGGACG 60.746 60.000 0.00 0.00 0.00 4.79
32 33 0.745845 CAAGCAGAAGGATGGGACGG 60.746 60.000 0.00 0.00 0.00 4.79
33 34 1.915078 AAGCAGAAGGATGGGACGGG 61.915 60.000 0.00 0.00 0.00 5.28
34 35 2.367202 GCAGAAGGATGGGACGGGA 61.367 63.158 0.00 0.00 0.00 5.14
35 36 1.826024 CAGAAGGATGGGACGGGAG 59.174 63.158 0.00 0.00 0.00 4.30
46 47 3.322466 ACGGGAGTTGGGAGGCAG 61.322 66.667 0.00 0.00 43.33 4.85
47 48 4.101448 CGGGAGTTGGGAGGCAGG 62.101 72.222 0.00 0.00 0.00 4.85
48 49 3.732849 GGGAGTTGGGAGGCAGGG 61.733 72.222 0.00 0.00 0.00 4.45
49 50 3.732849 GGAGTTGGGAGGCAGGGG 61.733 72.222 0.00 0.00 0.00 4.79
50 51 2.610859 GAGTTGGGAGGCAGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
51 52 2.003548 GAGTTGGGAGGCAGGGGAT 61.004 63.158 0.00 0.00 0.00 3.85
52 53 1.544917 AGTTGGGAGGCAGGGGATT 60.545 57.895 0.00 0.00 0.00 3.01
53 54 1.149133 AGTTGGGAGGCAGGGGATTT 61.149 55.000 0.00 0.00 0.00 2.17
54 55 0.972471 GTTGGGAGGCAGGGGATTTG 60.972 60.000 0.00 0.00 0.00 2.32
55 56 1.145900 TTGGGAGGCAGGGGATTTGA 61.146 55.000 0.00 0.00 0.00 2.69
56 57 0.925720 TGGGAGGCAGGGGATTTGAT 60.926 55.000 0.00 0.00 0.00 2.57
57 58 0.262876 GGGAGGCAGGGGATTTGATT 59.737 55.000 0.00 0.00 0.00 2.57
58 59 1.697284 GGAGGCAGGGGATTTGATTC 58.303 55.000 0.00 0.00 0.00 2.52
59 60 1.063717 GGAGGCAGGGGATTTGATTCA 60.064 52.381 0.00 0.00 0.00 2.57
60 61 2.027385 GAGGCAGGGGATTTGATTCAC 58.973 52.381 0.00 0.00 0.00 3.18
61 62 1.358787 AGGCAGGGGATTTGATTCACA 59.641 47.619 0.00 0.00 0.00 3.58
62 63 2.023695 AGGCAGGGGATTTGATTCACAT 60.024 45.455 0.00 0.00 0.00 3.21
63 64 2.363359 GGCAGGGGATTTGATTCACATC 59.637 50.000 4.52 4.52 0.00 3.06
64 65 2.033801 GCAGGGGATTTGATTCACATCG 59.966 50.000 6.70 0.00 31.08 3.84
65 66 2.620115 CAGGGGATTTGATTCACATCGG 59.380 50.000 6.70 0.00 31.08 4.18
66 67 1.338020 GGGGATTTGATTCACATCGGC 59.662 52.381 6.70 0.00 31.08 5.54
67 68 1.338020 GGGATTTGATTCACATCGGCC 59.662 52.381 6.70 0.00 31.08 6.13
68 69 2.301346 GGATTTGATTCACATCGGCCT 58.699 47.619 0.00 0.00 31.08 5.19
69 70 2.689983 GGATTTGATTCACATCGGCCTT 59.310 45.455 0.00 0.00 31.08 4.35
70 71 3.243201 GGATTTGATTCACATCGGCCTTC 60.243 47.826 0.00 0.00 31.08 3.46
71 72 2.488204 TTGATTCACATCGGCCTTCA 57.512 45.000 0.00 0.00 31.08 3.02
72 73 2.028420 TGATTCACATCGGCCTTCAG 57.972 50.000 0.00 0.00 31.08 3.02
73 74 0.659957 GATTCACATCGGCCTTCAGC 59.340 55.000 0.00 0.00 42.60 4.26
74 75 0.254178 ATTCACATCGGCCTTCAGCT 59.746 50.000 0.00 0.00 43.05 4.24
80 81 2.512515 CGGCCTTCAGCTGTAGCC 60.513 66.667 25.02 25.02 43.46 3.93
81 82 2.124529 GGCCTTCAGCTGTAGCCC 60.125 66.667 24.69 16.68 43.38 5.19
82 83 2.512515 GCCTTCAGCTGTAGCCCG 60.513 66.667 14.67 2.20 43.38 6.13
83 84 3.019003 GCCTTCAGCTGTAGCCCGA 62.019 63.158 14.67 0.00 43.38 5.14
84 85 1.153549 CCTTCAGCTGTAGCCCGAC 60.154 63.158 14.67 0.00 43.38 4.79
85 86 1.517257 CTTCAGCTGTAGCCCGACG 60.517 63.158 14.67 0.00 43.38 5.12
86 87 1.934220 CTTCAGCTGTAGCCCGACGA 61.934 60.000 14.67 0.00 43.38 4.20
87 88 1.934220 TTCAGCTGTAGCCCGACGAG 61.934 60.000 14.67 0.00 43.38 4.18
88 89 3.827898 AGCTGTAGCCCGACGAGC 61.828 66.667 0.00 0.00 43.38 5.03
89 90 3.827898 GCTGTAGCCCGACGAGCT 61.828 66.667 9.39 9.39 44.49 4.09
90 91 2.103143 CTGTAGCCCGACGAGCTG 59.897 66.667 14.71 0.00 41.71 4.24
91 92 3.417275 CTGTAGCCCGACGAGCTGG 62.417 68.421 14.71 0.00 41.71 4.85
92 93 3.138798 GTAGCCCGACGAGCTGGA 61.139 66.667 14.71 0.00 41.71 3.86
93 94 2.829003 TAGCCCGACGAGCTGGAG 60.829 66.667 14.71 0.00 41.71 3.86
94 95 3.339738 TAGCCCGACGAGCTGGAGA 62.340 63.158 14.71 0.00 41.71 3.71
95 96 4.500116 GCCCGACGAGCTGGAGAC 62.500 72.222 1.44 0.00 0.00 3.36
96 97 3.062466 CCCGACGAGCTGGAGACA 61.062 66.667 1.44 0.00 39.59 3.41
126 127 2.898729 CATCGTTGATGGAGGCTAGT 57.101 50.000 0.00 0.00 36.51 2.57
127 128 2.477825 CATCGTTGATGGAGGCTAGTG 58.522 52.381 0.00 0.00 36.51 2.74
128 129 0.175760 TCGTTGATGGAGGCTAGTGC 59.824 55.000 0.00 0.00 38.76 4.40
129 130 1.148157 CGTTGATGGAGGCTAGTGCG 61.148 60.000 0.00 0.00 40.82 5.34
130 131 0.108138 GTTGATGGAGGCTAGTGCGT 60.108 55.000 0.00 0.00 40.82 5.24
131 132 1.136305 GTTGATGGAGGCTAGTGCGTA 59.864 52.381 0.00 0.00 40.82 4.42
132 133 1.032794 TGATGGAGGCTAGTGCGTAG 58.967 55.000 0.00 0.00 40.82 3.51
145 146 3.449227 CGTAGCGCTGGTGGAGGA 61.449 66.667 22.90 0.00 0.00 3.71
146 147 2.978824 GTAGCGCTGGTGGAGGAA 59.021 61.111 22.90 0.00 0.00 3.36
147 148 1.153549 GTAGCGCTGGTGGAGGAAG 60.154 63.158 22.90 0.00 0.00 3.46
148 149 1.304962 TAGCGCTGGTGGAGGAAGA 60.305 57.895 22.90 0.00 0.00 2.87
149 150 0.902984 TAGCGCTGGTGGAGGAAGAA 60.903 55.000 22.90 0.00 0.00 2.52
150 151 1.743252 GCGCTGGTGGAGGAAGAAG 60.743 63.158 0.00 0.00 0.00 2.85
151 152 1.975327 CGCTGGTGGAGGAAGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
152 153 0.539051 CGCTGGTGGAGGAAGAAGAT 59.461 55.000 0.00 0.00 0.00 2.40
153 154 1.757118 CGCTGGTGGAGGAAGAAGATA 59.243 52.381 0.00 0.00 0.00 1.98
154 155 2.168521 CGCTGGTGGAGGAAGAAGATAA 59.831 50.000 0.00 0.00 0.00 1.75
155 156 3.739519 CGCTGGTGGAGGAAGAAGATAAG 60.740 52.174 0.00 0.00 0.00 1.73
156 157 3.432890 GCTGGTGGAGGAAGAAGATAAGG 60.433 52.174 0.00 0.00 0.00 2.69
157 158 3.777522 CTGGTGGAGGAAGAAGATAAGGT 59.222 47.826 0.00 0.00 0.00 3.50
158 159 4.175962 TGGTGGAGGAAGAAGATAAGGTT 58.824 43.478 0.00 0.00 0.00 3.50
159 160 5.347124 TGGTGGAGGAAGAAGATAAGGTTA 58.653 41.667 0.00 0.00 0.00 2.85
160 161 5.189145 TGGTGGAGGAAGAAGATAAGGTTAC 59.811 44.000 0.00 0.00 0.00 2.50
161 162 5.425862 GGTGGAGGAAGAAGATAAGGTTACT 59.574 44.000 0.00 0.00 0.00 2.24
162 163 6.610425 GGTGGAGGAAGAAGATAAGGTTACTA 59.390 42.308 0.00 0.00 0.00 1.82
163 164 7.290481 GGTGGAGGAAGAAGATAAGGTTACTAT 59.710 40.741 0.00 0.00 0.00 2.12
164 165 8.145122 GTGGAGGAAGAAGATAAGGTTACTATG 58.855 40.741 0.00 0.00 0.00 2.23
165 166 7.290248 TGGAGGAAGAAGATAAGGTTACTATGG 59.710 40.741 0.00 0.00 0.00 2.74
166 167 7.290481 GGAGGAAGAAGATAAGGTTACTATGGT 59.710 40.741 0.00 0.00 0.00 3.55
167 168 8.024145 AGGAAGAAGATAAGGTTACTATGGTG 57.976 38.462 0.00 0.00 0.00 4.17
168 169 7.624077 AGGAAGAAGATAAGGTTACTATGGTGT 59.376 37.037 0.00 0.00 0.00 4.16
169 170 7.711339 GGAAGAAGATAAGGTTACTATGGTGTG 59.289 40.741 0.00 0.00 0.00 3.82
170 171 7.973048 AGAAGATAAGGTTACTATGGTGTGA 57.027 36.000 0.00 0.00 0.00 3.58
171 172 8.012957 AGAAGATAAGGTTACTATGGTGTGAG 57.987 38.462 0.00 0.00 0.00 3.51
172 173 6.732896 AGATAAGGTTACTATGGTGTGAGG 57.267 41.667 0.00 0.00 0.00 3.86
173 174 6.203072 AGATAAGGTTACTATGGTGTGAGGT 58.797 40.000 0.00 0.00 0.00 3.85
174 175 4.553330 AAGGTTACTATGGTGTGAGGTG 57.447 45.455 0.00 0.00 0.00 4.00
175 176 2.236395 AGGTTACTATGGTGTGAGGTGC 59.764 50.000 0.00 0.00 0.00 5.01
176 177 2.236395 GGTTACTATGGTGTGAGGTGCT 59.764 50.000 0.00 0.00 0.00 4.40
177 178 3.307480 GGTTACTATGGTGTGAGGTGCTT 60.307 47.826 0.00 0.00 0.00 3.91
178 179 2.770164 ACTATGGTGTGAGGTGCTTC 57.230 50.000 0.00 0.00 0.00 3.86
179 180 2.260822 ACTATGGTGTGAGGTGCTTCT 58.739 47.619 0.00 0.00 0.00 2.85
180 181 2.027745 ACTATGGTGTGAGGTGCTTCTG 60.028 50.000 0.00 0.00 0.00 3.02
181 182 0.037303 ATGGTGTGAGGTGCTTCTGG 59.963 55.000 0.00 0.00 0.00 3.86
182 183 1.053835 TGGTGTGAGGTGCTTCTGGA 61.054 55.000 0.00 0.00 0.00 3.86
183 184 0.321122 GGTGTGAGGTGCTTCTGGAG 60.321 60.000 0.00 0.00 0.00 3.86
184 185 0.321122 GTGTGAGGTGCTTCTGGAGG 60.321 60.000 0.00 0.00 0.00 4.30
185 186 1.298014 GTGAGGTGCTTCTGGAGGG 59.702 63.158 0.00 0.00 0.00 4.30
186 187 1.920325 TGAGGTGCTTCTGGAGGGG 60.920 63.158 0.00 0.00 0.00 4.79
187 188 2.612115 AGGTGCTTCTGGAGGGGG 60.612 66.667 0.00 0.00 0.00 5.40
188 189 2.610859 GGTGCTTCTGGAGGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
189 190 2.674220 GGTGCTTCTGGAGGGGGAG 61.674 68.421 0.00 0.00 0.00 4.30
190 191 1.613630 GTGCTTCTGGAGGGGGAGA 60.614 63.158 0.00 0.00 0.00 3.71
191 192 1.306482 TGCTTCTGGAGGGGGAGAG 60.306 63.158 0.00 0.00 0.00 3.20
192 193 2.069430 GCTTCTGGAGGGGGAGAGG 61.069 68.421 0.00 0.00 0.00 3.69
193 194 1.706575 CTTCTGGAGGGGGAGAGGA 59.293 63.158 0.00 0.00 0.00 3.71
194 195 0.267356 CTTCTGGAGGGGGAGAGGAT 59.733 60.000 0.00 0.00 0.00 3.24
195 196 1.505538 CTTCTGGAGGGGGAGAGGATA 59.494 57.143 0.00 0.00 0.00 2.59
196 197 1.632769 TCTGGAGGGGGAGAGGATAA 58.367 55.000 0.00 0.00 0.00 1.75
197 198 1.505538 TCTGGAGGGGGAGAGGATAAG 59.494 57.143 0.00 0.00 0.00 1.73
198 199 0.568192 TGGAGGGGGAGAGGATAAGG 59.432 60.000 0.00 0.00 0.00 2.69
199 200 0.838554 GGAGGGGGAGAGGATAAGGC 60.839 65.000 0.00 0.00 0.00 4.35
200 201 0.192315 GAGGGGGAGAGGATAAGGCT 59.808 60.000 0.00 0.00 0.00 4.58
201 202 0.104725 AGGGGGAGAGGATAAGGCTG 60.105 60.000 0.00 0.00 0.00 4.85
202 203 1.130678 GGGGGAGAGGATAAGGCTGG 61.131 65.000 0.00 0.00 0.00 4.85
203 204 1.130678 GGGGAGAGGATAAGGCTGGG 61.131 65.000 0.00 0.00 0.00 4.45
204 205 0.400670 GGGAGAGGATAAGGCTGGGT 60.401 60.000 0.00 0.00 0.00 4.51
205 206 1.052617 GGAGAGGATAAGGCTGGGTC 58.947 60.000 0.00 0.00 0.00 4.46
206 207 0.676736 GAGAGGATAAGGCTGGGTCG 59.323 60.000 0.00 0.00 0.00 4.79
207 208 0.760945 AGAGGATAAGGCTGGGTCGG 60.761 60.000 0.00 0.00 0.00 4.79
208 209 2.111251 GGATAAGGCTGGGTCGGC 59.889 66.667 0.00 0.00 34.56 5.54
216 217 4.552365 CTGGGTCGGCCGCATGAT 62.552 66.667 23.51 0.00 35.19 2.45
217 218 4.545706 TGGGTCGGCCGCATGATC 62.546 66.667 23.51 2.49 34.97 2.92
218 219 4.241555 GGGTCGGCCGCATGATCT 62.242 66.667 23.51 0.00 34.97 2.75
219 220 2.663188 GGTCGGCCGCATGATCTC 60.663 66.667 23.51 2.74 0.00 2.75
220 221 2.419198 GTCGGCCGCATGATCTCT 59.581 61.111 23.51 0.00 0.00 3.10
221 222 1.227380 GTCGGCCGCATGATCTCTT 60.227 57.895 23.51 0.00 0.00 2.85
222 223 0.811616 GTCGGCCGCATGATCTCTTT 60.812 55.000 23.51 0.00 0.00 2.52
223 224 0.750249 TCGGCCGCATGATCTCTTTA 59.250 50.000 23.51 0.00 0.00 1.85
224 225 1.138069 TCGGCCGCATGATCTCTTTAA 59.862 47.619 23.51 0.00 0.00 1.52
225 226 1.939934 CGGCCGCATGATCTCTTTAAA 59.060 47.619 14.67 0.00 0.00 1.52
226 227 2.549754 CGGCCGCATGATCTCTTTAAAT 59.450 45.455 14.67 0.00 0.00 1.40
227 228 3.364366 CGGCCGCATGATCTCTTTAAATC 60.364 47.826 14.67 0.00 0.00 2.17
228 229 3.057946 GGCCGCATGATCTCTTTAAATCC 60.058 47.826 0.00 0.00 0.00 3.01
229 230 3.565482 GCCGCATGATCTCTTTAAATCCA 59.435 43.478 0.00 0.00 0.00 3.41
230 231 4.036734 GCCGCATGATCTCTTTAAATCCAA 59.963 41.667 0.00 0.00 0.00 3.53
231 232 5.514279 CCGCATGATCTCTTTAAATCCAAC 58.486 41.667 0.00 0.00 0.00 3.77
232 233 5.200454 CGCATGATCTCTTTAAATCCAACG 58.800 41.667 0.00 0.00 0.00 4.10
233 234 4.972440 GCATGATCTCTTTAAATCCAACGC 59.028 41.667 0.00 0.00 0.00 4.84
234 235 5.220931 GCATGATCTCTTTAAATCCAACGCT 60.221 40.000 0.00 0.00 0.00 5.07
235 236 6.017934 GCATGATCTCTTTAAATCCAACGCTA 60.018 38.462 0.00 0.00 0.00 4.26
236 237 7.571026 CATGATCTCTTTAAATCCAACGCTAG 58.429 38.462 0.00 0.00 0.00 3.42
237 238 5.523916 TGATCTCTTTAAATCCAACGCTAGC 59.476 40.000 4.06 4.06 0.00 3.42
238 239 3.863424 TCTCTTTAAATCCAACGCTAGCG 59.137 43.478 34.27 34.27 46.03 4.26
239 240 3.852286 TCTTTAAATCCAACGCTAGCGA 58.148 40.909 41.33 21.24 42.83 4.93
240 241 3.615496 TCTTTAAATCCAACGCTAGCGAC 59.385 43.478 41.33 0.00 42.83 5.19
241 242 1.552226 TAAATCCAACGCTAGCGACG 58.448 50.000 41.33 28.99 42.83 5.12
242 243 1.693083 AAATCCAACGCTAGCGACGC 61.693 55.000 41.33 13.03 42.83 5.19
268 269 4.712425 CTTCGTTCGGCCGGTCGT 62.712 66.667 29.96 0.00 0.00 4.34
269 270 4.283403 TTCGTTCGGCCGGTCGTT 62.283 61.111 29.96 0.00 0.00 3.85
270 271 3.788616 TTCGTTCGGCCGGTCGTTT 62.789 57.895 29.96 0.00 0.00 3.60
271 272 4.067016 CGTTCGGCCGGTCGTTTG 62.067 66.667 29.96 15.09 0.00 2.93
272 273 2.662527 GTTCGGCCGGTCGTTTGA 60.663 61.111 29.96 5.75 0.00 2.69
273 274 2.662527 TTCGGCCGGTCGTTTGAC 60.663 61.111 29.96 0.00 44.72 3.18
277 278 3.641986 GCCGGTCGTTTGACGCAA 61.642 61.111 1.90 0.00 46.49 4.85
278 279 3.015677 CCGGTCGTTTGACGCAAA 58.984 55.556 0.00 1.63 46.49 3.68
279 280 1.352404 CCGGTCGTTTGACGCAAAA 59.648 52.632 6.59 0.00 46.49 2.44
280 281 0.926628 CCGGTCGTTTGACGCAAAAC 60.927 55.000 6.59 5.28 46.49 2.43
394 404 3.755378 GCACAACAGAAAGAGATGGATGT 59.245 43.478 0.00 0.00 0.00 3.06
397 407 6.457934 GCACAACAGAAAGAGATGGATGTATG 60.458 42.308 0.00 0.00 0.00 2.39
424 438 6.299023 TGCAACATAGTACAAACTCAGTTG 57.701 37.500 13.98 13.98 44.86 3.16
487 501 3.304659 GCGAAACACACTTGATTCACCAT 60.305 43.478 0.00 0.00 34.88 3.55
494 524 4.155462 CACACTTGATTCACCATGAAGGAG 59.845 45.833 0.00 0.00 40.05 3.69
499 529 2.957402 TTCACCATGAAGGAGCTTGT 57.043 45.000 0.00 0.00 41.22 3.16
516 546 4.929211 AGCTTGTTTGTTTGTTTCTTCACC 59.071 37.500 0.00 0.00 0.00 4.02
517 547 4.201580 GCTTGTTTGTTTGTTTCTTCACCG 60.202 41.667 0.00 0.00 0.00 4.94
518 548 4.768130 TGTTTGTTTGTTTCTTCACCGA 57.232 36.364 0.00 0.00 0.00 4.69
519 549 5.317733 TGTTTGTTTGTTTCTTCACCGAT 57.682 34.783 0.00 0.00 0.00 4.18
582 614 1.299541 AGCTTGCACGTATATGTGGC 58.700 50.000 23.30 18.22 40.26 5.01
592 624 5.447954 GCACGTATATGTGGCAATTTGTACA 60.448 40.000 23.30 9.83 40.26 2.90
593 625 5.963004 CACGTATATGTGGCAATTTGTACAC 59.037 40.000 16.09 15.10 36.20 2.90
595 627 5.220510 CGTATATGTGGCAATTTGTACACGT 60.221 40.000 18.36 18.36 36.67 4.49
596 628 2.765108 TGTGGCAATTTGTACACGTG 57.235 45.000 15.48 15.48 36.67 4.49
597 629 1.335182 TGTGGCAATTTGTACACGTGG 59.665 47.619 21.57 1.66 36.67 4.94
598 630 0.312416 TGGCAATTTGTACACGTGGC 59.688 50.000 21.57 12.76 35.48 5.01
599 631 0.727793 GGCAATTTGTACACGTGGCG 60.728 55.000 21.57 0.00 0.00 5.69
600 632 0.040781 GCAATTTGTACACGTGGCGT 60.041 50.000 21.57 0.74 42.36 5.68
601 633 1.598430 GCAATTTGTACACGTGGCGTT 60.598 47.619 21.57 0.32 38.32 4.84
602 634 2.722071 CAATTTGTACACGTGGCGTTT 58.278 42.857 21.57 0.00 38.32 3.60
603 635 2.673976 ATTTGTACACGTGGCGTTTC 57.326 45.000 21.57 3.96 38.32 2.78
604 636 0.656785 TTTGTACACGTGGCGTTTCC 59.343 50.000 21.57 0.00 38.32 3.13
605 637 0.461516 TTGTACACGTGGCGTTTCCA 60.462 50.000 21.57 2.42 44.18 3.53
744 789 2.093235 AGATAGTGCTTTCTGGCTGTCC 60.093 50.000 0.00 0.00 0.00 4.02
770 816 0.108041 CAATGCCATGCCCCAAGTTC 60.108 55.000 0.00 0.00 0.00 3.01
778 824 2.507407 TGCCCCAAGTTCATAACCTC 57.493 50.000 0.00 0.00 0.00 3.85
814 863 1.221213 TCTAGCCTGGCCCCCAATTT 61.221 55.000 16.57 0.00 30.80 1.82
826 875 4.463070 GCCCCCAATTTCATGCAATTTAT 58.537 39.130 0.17 0.00 0.00 1.40
831 880 9.439500 CCCCCAATTTCATGCAATTTATATAAG 57.561 33.333 0.17 0.00 0.00 1.73
852 918 4.820775 AGAGATTAGCCTCCACCAATCTA 58.179 43.478 0.00 0.00 37.75 1.98
865 936 7.014711 CCTCCACCAATCTATCTATATACGCAT 59.985 40.741 0.00 0.00 0.00 4.73
877 948 8.988546 ATCTATATACGCATCTACCAAGATCT 57.011 34.615 0.00 0.00 40.65 2.75
879 950 2.231215 ACGCATCTACCAAGATCTGC 57.769 50.000 0.00 0.00 40.65 4.26
902 977 6.086871 GCTTAGCAAAACTCTACAATCCAAC 58.913 40.000 0.00 0.00 0.00 3.77
907 982 5.920840 GCAAAACTCTACAATCCAACCTTTC 59.079 40.000 0.00 0.00 0.00 2.62
911 986 5.805728 ACTCTACAATCCAACCTTTCGAAT 58.194 37.500 0.00 0.00 0.00 3.34
916 991 8.889717 TCTACAATCCAACCTTTCGAATTAATC 58.110 33.333 0.00 0.00 0.00 1.75
939 1017 6.310941 TCAGGAGAAGAAGAAGAAGAAGAGA 58.689 40.000 0.00 0.00 0.00 3.10
948 1026 7.154656 AGAAGAAGAAGAAGAGAAGAAGAAGC 58.845 38.462 0.00 0.00 0.00 3.86
963 1041 5.513233 AGAAGAAGCTCAATCTCTCTCTCT 58.487 41.667 0.00 0.00 0.00 3.10
976 1054 6.267492 TCTCTCTCTCTCTCTCTCTCTCTA 57.733 45.833 0.00 0.00 0.00 2.43
977 1055 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
978 1056 7.301420 TCTCTCTCTCTCTCTCTCTCTCTATT 58.699 42.308 0.00 0.00 0.00 1.73
1350 1453 4.670221 CGATCGATTGCTCATCTACGATGA 60.670 45.833 10.26 6.40 39.83 2.92
1351 1454 4.773323 TCGATTGCTCATCTACGATGAT 57.227 40.909 6.97 0.00 0.00 2.45
1352 1455 5.880054 TCGATTGCTCATCTACGATGATA 57.120 39.130 6.97 0.00 0.00 2.15
1353 1456 6.442513 TCGATTGCTCATCTACGATGATAT 57.557 37.500 6.97 2.61 0.00 1.63
1377 1480 8.904099 ATATGATATGATATGCATGACCACTG 57.096 34.615 10.16 0.00 37.87 3.66
1564 1732 3.507103 TTCCACAACATATGCATGCAC 57.493 42.857 25.37 0.00 35.39 4.57
1568 1740 1.193644 CAACATATGCATGCACGCAC 58.806 50.000 25.37 0.00 46.56 5.34
1601 1773 5.061853 ACAAATATTGCCATTGTTGTTGCA 58.938 33.333 0.00 0.00 33.73 4.08
1629 1829 5.436175 TGTACGTCCATCCAAATTCATCAT 58.564 37.500 0.00 0.00 0.00 2.45
1630 1830 5.527214 TGTACGTCCATCCAAATTCATCATC 59.473 40.000 0.00 0.00 0.00 2.92
1704 1905 3.775661 GAGTCAACTCTCTCTGCTACC 57.224 52.381 2.86 0.00 39.81 3.18
1711 1926 1.944024 CTCTCTCTGCTACCTACGGTG 59.056 57.143 0.00 0.00 36.19 4.94
1754 2289 6.154445 GGAGTGACAACATACTTACGAAAGA 58.846 40.000 0.00 0.00 36.50 2.52
1758 2293 7.117812 AGTGACAACATACTTACGAAAGAATGG 59.882 37.037 0.00 0.00 36.50 3.16
1759 2294 6.932400 TGACAACATACTTACGAAAGAATGGT 59.068 34.615 0.00 0.00 36.50 3.55
1763 2298 3.134574 ACTTACGAAAGAATGGTGGCA 57.865 42.857 0.00 0.00 36.50 4.92
1781 3082 2.114670 ATGCATGCAGGTGTACCGC 61.115 57.895 26.69 9.78 42.08 5.68
2964 4283 2.324332 CTGCGCCGTCTACGACATCT 62.324 60.000 4.18 0.00 43.02 2.90
3059 4378 0.911769 TCGGCTCCCAATGAAGTGAT 59.088 50.000 0.00 0.00 0.00 3.06
3060 4379 2.115427 TCGGCTCCCAATGAAGTGATA 58.885 47.619 0.00 0.00 0.00 2.15
3074 4393 9.044150 CAATGAAGTGATACCAACAAAACAAAT 57.956 29.630 0.00 0.00 0.00 2.32
3075 4394 9.612066 AATGAAGTGATACCAACAAAACAAATT 57.388 25.926 0.00 0.00 0.00 1.82
3092 4415 4.158949 ACAAATTAAAATCCCGTACCTGCC 59.841 41.667 0.00 0.00 0.00 4.85
3110 4433 3.541713 GGCCGCCTCTCCCTAGTG 61.542 72.222 0.71 0.00 0.00 2.74
3120 4443 4.021807 GCCTCTCCCTAGTGAATAAGCTAC 60.022 50.000 0.00 0.00 0.00 3.58
3121 4444 5.390387 CCTCTCCCTAGTGAATAAGCTACT 58.610 45.833 0.00 0.00 0.00 2.57
3122 4445 6.544650 CCTCTCCCTAGTGAATAAGCTACTA 58.455 44.000 0.00 0.00 0.00 1.82
3123 4446 7.179269 CCTCTCCCTAGTGAATAAGCTACTAT 58.821 42.308 0.00 0.00 0.00 2.12
3154 4484 3.425577 TGCATTGCATACTAGCTTTGC 57.574 42.857 7.38 0.00 40.79 3.68
3161 4491 4.797471 TGCATACTAGCTTTGCTGTTTTG 58.203 39.130 11.87 2.80 40.10 2.44
3169 4499 0.102120 TTTGCTGTTTTGCAGGACCG 59.898 50.000 0.00 0.00 45.34 4.79
3180 4510 1.359459 GCAGGACCGACCGAACAATC 61.359 60.000 0.00 0.00 44.74 2.67
3206 4551 8.950210 CCATACATATACCAGCTTAATTTCCAG 58.050 37.037 0.00 0.00 0.00 3.86
3211 4556 2.178580 CCAGCTTAATTTCCAGGGCAA 58.821 47.619 0.00 0.00 0.00 4.52
3291 4640 4.606457 AATAATCGCTTCAGAACAGCAC 57.394 40.909 0.00 0.00 37.07 4.40
3444 4817 3.440228 ACACAACGTGTATTGCAAAACC 58.560 40.909 1.71 0.00 45.56 3.27
3465 4838 6.114187 ACCTACAGTGTTGAAGATGATCAA 57.886 37.500 0.00 0.00 36.99 2.57
3467 4840 6.652481 ACCTACAGTGTTGAAGATGATCAAAG 59.348 38.462 0.00 0.00 40.76 2.77
3505 4885 5.350504 ACCTTCAAATCGATCAGATCAGT 57.649 39.130 11.12 0.00 38.98 3.41
3900 5281 4.469586 AGGCAAAAGACCCTTTTCTTTCAA 59.530 37.500 2.05 0.00 43.62 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.329596 ATCCTTCTGCTTGGGACACC 59.670 55.000 0.00 0.00 39.29 4.16
7 8 1.457346 CATCCTTCTGCTTGGGACAC 58.543 55.000 0.00 0.00 39.29 3.67
8 9 0.329261 CCATCCTTCTGCTTGGGACA 59.671 55.000 0.00 0.00 31.48 4.02
9 10 3.181526 CCATCCTTCTGCTTGGGAC 57.818 57.895 0.00 0.00 31.48 4.46
11 12 4.672251 CCCATCCTTCTGCTTGGG 57.328 61.111 0.00 0.00 42.72 4.12
12 13 0.745845 CGTCCCATCCTTCTGCTTGG 60.746 60.000 0.00 0.00 0.00 3.61
13 14 0.745845 CCGTCCCATCCTTCTGCTTG 60.746 60.000 0.00 0.00 0.00 4.01
14 15 1.604378 CCGTCCCATCCTTCTGCTT 59.396 57.895 0.00 0.00 0.00 3.91
15 16 2.370445 CCCGTCCCATCCTTCTGCT 61.370 63.158 0.00 0.00 0.00 4.24
16 17 2.190578 CCCGTCCCATCCTTCTGC 59.809 66.667 0.00 0.00 0.00 4.26
17 18 0.978146 ACTCCCGTCCCATCCTTCTG 60.978 60.000 0.00 0.00 0.00 3.02
18 19 0.252742 AACTCCCGTCCCATCCTTCT 60.253 55.000 0.00 0.00 0.00 2.85
19 20 0.107654 CAACTCCCGTCCCATCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
20 21 1.562672 CCAACTCCCGTCCCATCCTT 61.563 60.000 0.00 0.00 0.00 3.36
21 22 1.995626 CCAACTCCCGTCCCATCCT 60.996 63.158 0.00 0.00 0.00 3.24
22 23 2.590092 CCAACTCCCGTCCCATCC 59.410 66.667 0.00 0.00 0.00 3.51
23 24 1.972660 CTCCCAACTCCCGTCCCATC 61.973 65.000 0.00 0.00 0.00 3.51
24 25 1.995626 CTCCCAACTCCCGTCCCAT 60.996 63.158 0.00 0.00 0.00 4.00
25 26 2.606519 CTCCCAACTCCCGTCCCA 60.607 66.667 0.00 0.00 0.00 4.37
26 27 3.400054 CCTCCCAACTCCCGTCCC 61.400 72.222 0.00 0.00 0.00 4.46
27 28 4.097361 GCCTCCCAACTCCCGTCC 62.097 72.222 0.00 0.00 0.00 4.79
28 29 3.316573 CTGCCTCCCAACTCCCGTC 62.317 68.421 0.00 0.00 0.00 4.79
29 30 3.322466 CTGCCTCCCAACTCCCGT 61.322 66.667 0.00 0.00 0.00 5.28
30 31 4.101448 CCTGCCTCCCAACTCCCG 62.101 72.222 0.00 0.00 0.00 5.14
31 32 3.732849 CCCTGCCTCCCAACTCCC 61.733 72.222 0.00 0.00 0.00 4.30
32 33 3.732849 CCCCTGCCTCCCAACTCC 61.733 72.222 0.00 0.00 0.00 3.85
33 34 1.575447 AATCCCCTGCCTCCCAACTC 61.575 60.000 0.00 0.00 0.00 3.01
34 35 1.149133 AAATCCCCTGCCTCCCAACT 61.149 55.000 0.00 0.00 0.00 3.16
35 36 0.972471 CAAATCCCCTGCCTCCCAAC 60.972 60.000 0.00 0.00 0.00 3.77
36 37 1.145900 TCAAATCCCCTGCCTCCCAA 61.146 55.000 0.00 0.00 0.00 4.12
37 38 0.925720 ATCAAATCCCCTGCCTCCCA 60.926 55.000 0.00 0.00 0.00 4.37
38 39 0.262876 AATCAAATCCCCTGCCTCCC 59.737 55.000 0.00 0.00 0.00 4.30
39 40 1.063717 TGAATCAAATCCCCTGCCTCC 60.064 52.381 0.00 0.00 0.00 4.30
40 41 2.027385 GTGAATCAAATCCCCTGCCTC 58.973 52.381 0.00 0.00 0.00 4.70
41 42 1.358787 TGTGAATCAAATCCCCTGCCT 59.641 47.619 0.00 0.00 0.00 4.75
42 43 1.851304 TGTGAATCAAATCCCCTGCC 58.149 50.000 0.00 0.00 0.00 4.85
43 44 2.033801 CGATGTGAATCAAATCCCCTGC 59.966 50.000 7.77 0.00 0.00 4.85
44 45 2.620115 CCGATGTGAATCAAATCCCCTG 59.380 50.000 7.77 0.00 0.00 4.45
45 46 2.936202 CCGATGTGAATCAAATCCCCT 58.064 47.619 7.77 0.00 0.00 4.79
46 47 1.338020 GCCGATGTGAATCAAATCCCC 59.662 52.381 7.77 0.00 0.00 4.81
47 48 1.338020 GGCCGATGTGAATCAAATCCC 59.662 52.381 7.77 0.97 0.00 3.85
48 49 2.301346 AGGCCGATGTGAATCAAATCC 58.699 47.619 7.77 0.00 0.00 3.01
49 50 3.378112 TGAAGGCCGATGTGAATCAAATC 59.622 43.478 3.32 3.32 0.00 2.17
50 51 3.355378 TGAAGGCCGATGTGAATCAAAT 58.645 40.909 0.00 0.00 0.00 2.32
51 52 2.749076 CTGAAGGCCGATGTGAATCAAA 59.251 45.455 0.00 0.00 0.00 2.69
52 53 2.358957 CTGAAGGCCGATGTGAATCAA 58.641 47.619 0.00 0.00 0.00 2.57
53 54 2.013563 GCTGAAGGCCGATGTGAATCA 61.014 52.381 0.00 0.00 34.27 2.57
54 55 0.659957 GCTGAAGGCCGATGTGAATC 59.340 55.000 0.00 0.00 34.27 2.52
55 56 0.254178 AGCTGAAGGCCGATGTGAAT 59.746 50.000 0.00 0.00 43.05 2.57
56 57 0.674581 CAGCTGAAGGCCGATGTGAA 60.675 55.000 8.42 0.00 43.05 3.18
57 58 1.078918 CAGCTGAAGGCCGATGTGA 60.079 57.895 8.42 0.00 43.05 3.58
58 59 0.108186 TACAGCTGAAGGCCGATGTG 60.108 55.000 23.35 1.04 43.05 3.21
59 60 0.176680 CTACAGCTGAAGGCCGATGT 59.823 55.000 23.35 4.67 43.05 3.06
60 61 1.156645 GCTACAGCTGAAGGCCGATG 61.157 60.000 23.35 0.00 43.05 3.84
61 62 1.144936 GCTACAGCTGAAGGCCGAT 59.855 57.895 23.35 0.00 43.05 4.18
62 63 2.579201 GCTACAGCTGAAGGCCGA 59.421 61.111 23.35 0.00 43.05 5.54
63 64 2.512515 GGCTACAGCTGAAGGCCG 60.513 66.667 23.35 2.66 43.05 6.13
65 66 2.512515 CGGGCTACAGCTGAAGGC 60.513 66.667 23.35 19.42 41.70 4.35
66 67 1.153549 GTCGGGCTACAGCTGAAGG 60.154 63.158 23.35 10.65 41.70 3.46
67 68 1.517257 CGTCGGGCTACAGCTGAAG 60.517 63.158 23.35 4.70 41.70 3.02
68 69 1.934220 CTCGTCGGGCTACAGCTGAA 61.934 60.000 23.35 0.00 41.70 3.02
69 70 2.360726 TCGTCGGGCTACAGCTGA 60.361 61.111 23.35 2.95 41.70 4.26
70 71 2.103143 CTCGTCGGGCTACAGCTG 59.897 66.667 13.48 13.48 41.70 4.24
71 72 3.827898 GCTCGTCGGGCTACAGCT 61.828 66.667 10.59 0.00 41.70 4.24
72 73 3.827898 AGCTCGTCGGGCTACAGC 61.828 66.667 20.34 5.44 38.36 4.40
73 74 2.103143 CAGCTCGTCGGGCTACAG 59.897 66.667 21.35 3.55 38.03 2.74
74 75 3.449227 CCAGCTCGTCGGGCTACA 61.449 66.667 21.35 0.00 38.03 2.74
75 76 3.127352 CTCCAGCTCGTCGGGCTAC 62.127 68.421 21.35 0.00 38.03 3.58
76 77 2.829003 CTCCAGCTCGTCGGGCTA 60.829 66.667 21.35 4.02 38.03 3.93
77 78 4.742649 TCTCCAGCTCGTCGGGCT 62.743 66.667 15.47 15.47 41.07 5.19
78 79 4.500116 GTCTCCAGCTCGTCGGGC 62.500 72.222 9.70 9.70 0.00 6.13
79 80 3.057547 CTGTCTCCAGCTCGTCGGG 62.058 68.421 0.00 0.00 0.00 5.14
80 81 2.487428 CTGTCTCCAGCTCGTCGG 59.513 66.667 0.00 0.00 0.00 4.79
81 82 2.487428 CCTGTCTCCAGCTCGTCG 59.513 66.667 0.00 0.00 37.38 5.12
82 83 1.251527 TTCCCTGTCTCCAGCTCGTC 61.252 60.000 0.00 0.00 37.38 4.20
83 84 1.228894 TTCCCTGTCTCCAGCTCGT 60.229 57.895 0.00 0.00 37.38 4.18
84 85 1.216710 GTTCCCTGTCTCCAGCTCG 59.783 63.158 0.00 0.00 37.38 5.03
85 86 0.980423 AAGTTCCCTGTCTCCAGCTC 59.020 55.000 0.00 0.00 37.38 4.09
86 87 0.980423 GAAGTTCCCTGTCTCCAGCT 59.020 55.000 0.00 0.00 37.38 4.24
87 88 0.035915 GGAAGTTCCCTGTCTCCAGC 60.036 60.000 11.17 0.00 37.38 4.85
107 108 2.477825 CACTAGCCTCCATCAACGATG 58.522 52.381 0.00 0.00 39.52 3.84
108 109 1.202580 GCACTAGCCTCCATCAACGAT 60.203 52.381 0.00 0.00 33.58 3.73
109 110 0.175760 GCACTAGCCTCCATCAACGA 59.824 55.000 0.00 0.00 33.58 3.85
110 111 1.148157 CGCACTAGCCTCCATCAACG 61.148 60.000 0.00 0.00 37.52 4.10
111 112 0.108138 ACGCACTAGCCTCCATCAAC 60.108 55.000 0.00 0.00 37.52 3.18
112 113 1.409064 CTACGCACTAGCCTCCATCAA 59.591 52.381 0.00 0.00 37.52 2.57
113 114 1.032794 CTACGCACTAGCCTCCATCA 58.967 55.000 0.00 0.00 37.52 3.07
114 115 0.319125 GCTACGCACTAGCCTCCATC 60.319 60.000 0.00 0.00 42.08 3.51
115 116 1.742768 GCTACGCACTAGCCTCCAT 59.257 57.895 0.00 0.00 42.08 3.41
116 117 2.771639 CGCTACGCACTAGCCTCCA 61.772 63.158 5.10 0.00 44.73 3.86
117 118 2.026301 CGCTACGCACTAGCCTCC 59.974 66.667 5.10 0.00 44.73 4.30
128 129 2.890847 CTTCCTCCACCAGCGCTACG 62.891 65.000 10.99 5.74 0.00 3.51
129 130 1.153549 CTTCCTCCACCAGCGCTAC 60.154 63.158 10.99 0.00 0.00 3.58
130 131 0.902984 TTCTTCCTCCACCAGCGCTA 60.903 55.000 10.99 0.00 0.00 4.26
131 132 2.177594 CTTCTTCCTCCACCAGCGCT 62.178 60.000 2.64 2.64 0.00 5.92
132 133 1.743252 CTTCTTCCTCCACCAGCGC 60.743 63.158 0.00 0.00 0.00 5.92
133 134 0.539051 ATCTTCTTCCTCCACCAGCG 59.461 55.000 0.00 0.00 0.00 5.18
134 135 3.432890 CCTTATCTTCTTCCTCCACCAGC 60.433 52.174 0.00 0.00 0.00 4.85
135 136 3.777522 ACCTTATCTTCTTCCTCCACCAG 59.222 47.826 0.00 0.00 0.00 4.00
136 137 3.803340 ACCTTATCTTCTTCCTCCACCA 58.197 45.455 0.00 0.00 0.00 4.17
137 138 4.846168 AACCTTATCTTCTTCCTCCACC 57.154 45.455 0.00 0.00 0.00 4.61
138 139 6.547930 AGTAACCTTATCTTCTTCCTCCAC 57.452 41.667 0.00 0.00 0.00 4.02
139 140 7.290248 CCATAGTAACCTTATCTTCTTCCTCCA 59.710 40.741 0.00 0.00 0.00 3.86
140 141 7.290481 ACCATAGTAACCTTATCTTCTTCCTCC 59.710 40.741 0.00 0.00 0.00 4.30
141 142 8.145122 CACCATAGTAACCTTATCTTCTTCCTC 58.855 40.741 0.00 0.00 0.00 3.71
142 143 7.624077 ACACCATAGTAACCTTATCTTCTTCCT 59.376 37.037 0.00 0.00 0.00 3.36
143 144 7.711339 CACACCATAGTAACCTTATCTTCTTCC 59.289 40.741 0.00 0.00 0.00 3.46
144 145 8.475639 TCACACCATAGTAACCTTATCTTCTTC 58.524 37.037 0.00 0.00 0.00 2.87
145 146 8.375493 TCACACCATAGTAACCTTATCTTCTT 57.625 34.615 0.00 0.00 0.00 2.52
146 147 7.070074 CCTCACACCATAGTAACCTTATCTTCT 59.930 40.741 0.00 0.00 0.00 2.85
147 148 7.147707 ACCTCACACCATAGTAACCTTATCTTC 60.148 40.741 0.00 0.00 0.00 2.87
148 149 6.672657 ACCTCACACCATAGTAACCTTATCTT 59.327 38.462 0.00 0.00 0.00 2.40
149 150 6.098409 CACCTCACACCATAGTAACCTTATCT 59.902 42.308 0.00 0.00 0.00 1.98
150 151 6.281405 CACCTCACACCATAGTAACCTTATC 58.719 44.000 0.00 0.00 0.00 1.75
151 152 5.396436 GCACCTCACACCATAGTAACCTTAT 60.396 44.000 0.00 0.00 0.00 1.73
152 153 4.081309 GCACCTCACACCATAGTAACCTTA 60.081 45.833 0.00 0.00 0.00 2.69
153 154 3.307480 GCACCTCACACCATAGTAACCTT 60.307 47.826 0.00 0.00 0.00 3.50
154 155 2.236395 GCACCTCACACCATAGTAACCT 59.764 50.000 0.00 0.00 0.00 3.50
155 156 2.236395 AGCACCTCACACCATAGTAACC 59.764 50.000 0.00 0.00 0.00 2.85
156 157 3.611766 AGCACCTCACACCATAGTAAC 57.388 47.619 0.00 0.00 0.00 2.50
157 158 3.838317 AGAAGCACCTCACACCATAGTAA 59.162 43.478 0.00 0.00 0.00 2.24
158 159 3.195610 CAGAAGCACCTCACACCATAGTA 59.804 47.826 0.00 0.00 0.00 1.82
159 160 2.027745 CAGAAGCACCTCACACCATAGT 60.028 50.000 0.00 0.00 0.00 2.12
160 161 2.625737 CAGAAGCACCTCACACCATAG 58.374 52.381 0.00 0.00 0.00 2.23
161 162 1.278985 CCAGAAGCACCTCACACCATA 59.721 52.381 0.00 0.00 0.00 2.74
162 163 0.037303 CCAGAAGCACCTCACACCAT 59.963 55.000 0.00 0.00 0.00 3.55
163 164 1.053835 TCCAGAAGCACCTCACACCA 61.054 55.000 0.00 0.00 0.00 4.17
164 165 0.321122 CTCCAGAAGCACCTCACACC 60.321 60.000 0.00 0.00 0.00 4.16
165 166 0.321122 CCTCCAGAAGCACCTCACAC 60.321 60.000 0.00 0.00 0.00 3.82
166 167 1.483595 CCCTCCAGAAGCACCTCACA 61.484 60.000 0.00 0.00 0.00 3.58
167 168 1.298014 CCCTCCAGAAGCACCTCAC 59.702 63.158 0.00 0.00 0.00 3.51
168 169 1.920325 CCCCTCCAGAAGCACCTCA 60.920 63.158 0.00 0.00 0.00 3.86
169 170 2.674220 CCCCCTCCAGAAGCACCTC 61.674 68.421 0.00 0.00 0.00 3.85
170 171 2.612115 CCCCCTCCAGAAGCACCT 60.612 66.667 0.00 0.00 0.00 4.00
171 172 2.610859 TCCCCCTCCAGAAGCACC 60.611 66.667 0.00 0.00 0.00 5.01
172 173 1.613630 TCTCCCCCTCCAGAAGCAC 60.614 63.158 0.00 0.00 0.00 4.40
173 174 1.306482 CTCTCCCCCTCCAGAAGCA 60.306 63.158 0.00 0.00 0.00 3.91
174 175 2.069430 CCTCTCCCCCTCCAGAAGC 61.069 68.421 0.00 0.00 0.00 3.86
175 176 0.267356 ATCCTCTCCCCCTCCAGAAG 59.733 60.000 0.00 0.00 0.00 2.85
176 177 1.632769 TATCCTCTCCCCCTCCAGAA 58.367 55.000 0.00 0.00 0.00 3.02
177 178 1.505538 CTTATCCTCTCCCCCTCCAGA 59.494 57.143 0.00 0.00 0.00 3.86
178 179 1.484065 CCTTATCCTCTCCCCCTCCAG 60.484 61.905 0.00 0.00 0.00 3.86
179 180 0.568192 CCTTATCCTCTCCCCCTCCA 59.432 60.000 0.00 0.00 0.00 3.86
180 181 0.838554 GCCTTATCCTCTCCCCCTCC 60.839 65.000 0.00 0.00 0.00 4.30
181 182 0.192315 AGCCTTATCCTCTCCCCCTC 59.808 60.000 0.00 0.00 0.00 4.30
182 183 0.104725 CAGCCTTATCCTCTCCCCCT 60.105 60.000 0.00 0.00 0.00 4.79
183 184 1.130678 CCAGCCTTATCCTCTCCCCC 61.131 65.000 0.00 0.00 0.00 5.40
184 185 1.130678 CCCAGCCTTATCCTCTCCCC 61.131 65.000 0.00 0.00 0.00 4.81
185 186 0.400670 ACCCAGCCTTATCCTCTCCC 60.401 60.000 0.00 0.00 0.00 4.30
186 187 1.052617 GACCCAGCCTTATCCTCTCC 58.947 60.000 0.00 0.00 0.00 3.71
187 188 0.676736 CGACCCAGCCTTATCCTCTC 59.323 60.000 0.00 0.00 0.00 3.20
188 189 0.760945 CCGACCCAGCCTTATCCTCT 60.761 60.000 0.00 0.00 0.00 3.69
189 190 1.749033 CCGACCCAGCCTTATCCTC 59.251 63.158 0.00 0.00 0.00 3.71
190 191 2.444256 GCCGACCCAGCCTTATCCT 61.444 63.158 0.00 0.00 0.00 3.24
191 192 2.111251 GCCGACCCAGCCTTATCC 59.889 66.667 0.00 0.00 0.00 2.59
199 200 4.552365 ATCATGCGGCCGACCCAG 62.552 66.667 33.48 13.35 0.00 4.45
200 201 4.545706 GATCATGCGGCCGACCCA 62.546 66.667 33.48 18.89 0.00 4.51
201 202 4.241555 AGATCATGCGGCCGACCC 62.242 66.667 33.48 12.57 0.00 4.46
202 203 2.650813 AAGAGATCATGCGGCCGACC 62.651 60.000 33.48 13.46 0.00 4.79
203 204 0.811616 AAAGAGATCATGCGGCCGAC 60.812 55.000 33.48 21.14 0.00 4.79
204 205 0.750249 TAAAGAGATCATGCGGCCGA 59.250 50.000 33.48 15.19 0.00 5.54
205 206 1.581934 TTAAAGAGATCATGCGGCCG 58.418 50.000 24.05 24.05 0.00 6.13
206 207 3.057946 GGATTTAAAGAGATCATGCGGCC 60.058 47.826 0.00 0.00 0.00 6.13
207 208 3.565482 TGGATTTAAAGAGATCATGCGGC 59.435 43.478 0.00 0.00 0.00 6.53
208 209 5.514279 GTTGGATTTAAAGAGATCATGCGG 58.486 41.667 0.00 0.00 0.00 5.69
209 210 5.200454 CGTTGGATTTAAAGAGATCATGCG 58.800 41.667 0.00 0.00 0.00 4.73
210 211 4.972440 GCGTTGGATTTAAAGAGATCATGC 59.028 41.667 0.00 0.00 0.00 4.06
211 212 6.369059 AGCGTTGGATTTAAAGAGATCATG 57.631 37.500 0.00 0.00 0.00 3.07
212 213 6.203723 GCTAGCGTTGGATTTAAAGAGATCAT 59.796 38.462 0.00 0.00 0.00 2.45
213 214 5.523916 GCTAGCGTTGGATTTAAAGAGATCA 59.476 40.000 0.00 0.00 0.00 2.92
214 215 5.332656 CGCTAGCGTTGGATTTAAAGAGATC 60.333 44.000 28.66 0.00 34.35 2.75
215 216 4.508124 CGCTAGCGTTGGATTTAAAGAGAT 59.492 41.667 28.66 0.00 34.35 2.75
216 217 3.863424 CGCTAGCGTTGGATTTAAAGAGA 59.137 43.478 28.66 0.00 34.35 3.10
217 218 3.863424 TCGCTAGCGTTGGATTTAAAGAG 59.137 43.478 34.10 2.90 40.74 2.85
218 219 3.615496 GTCGCTAGCGTTGGATTTAAAGA 59.385 43.478 34.10 9.58 40.74 2.52
219 220 3.541516 CGTCGCTAGCGTTGGATTTAAAG 60.542 47.826 34.10 12.06 40.74 1.85
220 221 2.346244 CGTCGCTAGCGTTGGATTTAAA 59.654 45.455 34.10 10.34 40.74 1.52
221 222 1.921887 CGTCGCTAGCGTTGGATTTAA 59.078 47.619 34.10 11.12 40.74 1.52
222 223 1.552226 CGTCGCTAGCGTTGGATTTA 58.448 50.000 34.10 11.89 40.74 1.40
223 224 1.693083 GCGTCGCTAGCGTTGGATTT 61.693 55.000 34.10 0.00 40.74 2.17
224 225 2.165301 GCGTCGCTAGCGTTGGATT 61.165 57.895 34.10 0.00 40.74 3.01
225 226 2.582498 GCGTCGCTAGCGTTGGAT 60.582 61.111 34.10 0.00 40.74 3.41
251 252 4.712425 ACGACCGGCCGAACGAAG 62.712 66.667 35.78 20.03 35.47 3.79
252 253 3.788616 AAACGACCGGCCGAACGAA 62.789 57.895 35.78 0.00 35.47 3.85
253 254 4.283403 AAACGACCGGCCGAACGA 62.283 61.111 35.78 0.00 35.47 3.85
254 255 4.067016 CAAACGACCGGCCGAACG 62.067 66.667 30.73 30.70 0.00 3.95
255 256 2.662527 TCAAACGACCGGCCGAAC 60.663 61.111 30.73 18.85 0.00 3.95
256 257 2.662527 GTCAAACGACCGGCCGAA 60.663 61.111 30.73 0.00 0.00 4.30
260 261 2.649843 TTTTGCGTCAAACGACCGGC 62.650 55.000 0.00 0.00 46.05 6.13
261 262 0.926628 GTTTTGCGTCAAACGACCGG 60.927 55.000 0.00 0.00 46.05 5.28
262 263 1.250466 CGTTTTGCGTCAAACGACCG 61.250 55.000 22.02 10.99 46.05 4.79
263 264 2.476345 CGTTTTGCGTCAAACGACC 58.524 52.632 22.02 5.01 46.05 4.79
273 274 3.375922 ACCATATAGGGAAACGTTTTGCG 59.624 43.478 15.89 4.66 43.89 4.85
274 275 4.976224 ACCATATAGGGAAACGTTTTGC 57.024 40.909 15.89 2.90 43.89 3.68
275 276 9.720769 AGATATACCATATAGGGAAACGTTTTG 57.279 33.333 15.89 7.29 43.89 2.44
276 277 9.939802 GAGATATACCATATAGGGAAACGTTTT 57.060 33.333 15.89 1.63 43.89 2.43
277 278 8.537858 GGAGATATACCATATAGGGAAACGTTT 58.462 37.037 14.57 14.57 43.89 3.60
278 279 7.899709 AGGAGATATACCATATAGGGAAACGTT 59.100 37.037 11.11 0.00 43.89 3.99
279 280 7.342284 CAGGAGATATACCATATAGGGAAACGT 59.658 40.741 11.11 0.00 43.89 3.99
280 281 7.201920 CCAGGAGATATACCATATAGGGAAACG 60.202 44.444 11.11 0.00 43.89 3.60
281 282 7.419172 GCCAGGAGATATACCATATAGGGAAAC 60.419 44.444 11.11 0.00 43.89 2.78
282 283 6.615726 GCCAGGAGATATACCATATAGGGAAA 59.384 42.308 11.11 0.00 43.89 3.13
283 284 6.067600 AGCCAGGAGATATACCATATAGGGAA 60.068 42.308 11.11 0.00 43.89 3.97
284 285 5.440072 AGCCAGGAGATATACCATATAGGGA 59.560 44.000 11.11 0.00 43.89 4.20
285 286 5.721225 AGCCAGGAGATATACCATATAGGG 58.279 45.833 0.82 0.82 43.89 3.53
286 287 6.435904 GCTAGCCAGGAGATATACCATATAGG 59.564 46.154 2.29 0.00 45.67 2.57
287 288 7.237982 AGCTAGCCAGGAGATATACCATATAG 58.762 42.308 12.13 0.00 0.00 1.31
317 318 7.131565 CACATTTATGCATATGAACACGCTAA 58.868 34.615 14.93 0.27 0.00 3.09
394 404 5.885352 AGTTTGTACTATGTTGCATGGCATA 59.115 36.000 0.00 0.00 33.28 3.14
397 407 4.155826 TGAGTTTGTACTATGTTGCATGGC 59.844 41.667 0.00 0.00 33.84 4.40
424 438 7.742151 ACACAAAACAGAAGAAAAGCAAATTC 58.258 30.769 0.00 0.00 0.00 2.17
487 501 4.799564 AACAAACAAACAAGCTCCTTCA 57.200 36.364 0.00 0.00 0.00 3.02
494 524 4.201580 CGGTGAAGAAACAAACAAACAAGC 60.202 41.667 0.00 0.00 0.00 4.01
499 529 5.568685 TGATCGGTGAAGAAACAAACAAA 57.431 34.783 0.00 0.00 0.00 2.83
569 599 5.963004 GTGTACAAATTGCCACATATACGTG 59.037 40.000 0.00 0.00 36.61 4.49
582 614 2.392933 AACGCCACGTGTACAAATTG 57.607 45.000 15.65 0.00 39.99 2.32
592 624 0.599204 CACTACTGGAAACGCCACGT 60.599 55.000 0.00 0.00 43.33 4.49
593 625 0.319211 TCACTACTGGAAACGCCACG 60.319 55.000 0.00 0.00 43.33 4.94
595 627 1.943968 GCATCACTACTGGAAACGCCA 60.944 52.381 0.00 0.00 46.96 5.69
596 628 0.727398 GCATCACTACTGGAAACGCC 59.273 55.000 0.00 0.00 37.10 5.68
597 629 1.438651 TGCATCACTACTGGAAACGC 58.561 50.000 0.00 0.00 0.00 4.84
598 630 3.002791 ACATGCATCACTACTGGAAACG 58.997 45.455 0.00 0.00 0.00 3.60
599 631 4.256920 AGACATGCATCACTACTGGAAAC 58.743 43.478 0.00 0.00 0.00 2.78
600 632 4.558226 AGACATGCATCACTACTGGAAA 57.442 40.909 0.00 0.00 0.00 3.13
601 633 4.020307 TGAAGACATGCATCACTACTGGAA 60.020 41.667 0.00 0.00 0.00 3.53
602 634 3.515104 TGAAGACATGCATCACTACTGGA 59.485 43.478 0.00 0.00 0.00 3.86
603 635 3.620374 GTGAAGACATGCATCACTACTGG 59.380 47.826 15.19 0.00 40.94 4.00
604 636 4.854361 GTGAAGACATGCATCACTACTG 57.146 45.455 15.19 0.00 40.94 2.74
609 641 4.214971 ACAAAGAGTGAAGACATGCATCAC 59.785 41.667 14.84 14.84 43.65 3.06
610 642 4.392047 ACAAAGAGTGAAGACATGCATCA 58.608 39.130 0.00 0.00 0.00 3.07
652 687 0.625091 TAATACAGGGGGTGGGTGGG 60.625 60.000 0.00 0.00 0.00 4.61
653 688 0.843984 CTAATACAGGGGGTGGGTGG 59.156 60.000 0.00 0.00 0.00 4.61
744 789 2.428925 GGCATGGCATTGACCTGGG 61.429 63.158 15.47 0.00 0.00 4.45
783 829 3.745797 GCCAGGCTAGATTAGAACCCAAG 60.746 52.174 3.29 0.00 0.00 3.61
826 875 7.019388 AGATTGGTGGAGGCTAATCTCTTATA 58.981 38.462 4.07 0.00 40.95 0.98
831 880 5.483583 AGATAGATTGGTGGAGGCTAATCTC 59.516 44.000 11.67 1.77 42.84 2.75
832 881 5.410602 AGATAGATTGGTGGAGGCTAATCT 58.589 41.667 12.66 12.66 44.85 2.40
833 882 5.753721 AGATAGATTGGTGGAGGCTAATC 57.246 43.478 0.00 0.00 36.84 1.75
852 918 8.845227 CAGATCTTGGTAGATGCGTATATAGAT 58.155 37.037 0.00 0.00 41.23 1.98
865 936 5.420725 TTTGCTAAGCAGATCTTGGTAGA 57.579 39.130 0.00 0.00 40.61 2.59
877 948 5.312895 TGGATTGTAGAGTTTTGCTAAGCA 58.687 37.500 0.00 0.00 36.47 3.91
879 950 6.431234 AGGTTGGATTGTAGAGTTTTGCTAAG 59.569 38.462 0.00 0.00 0.00 2.18
902 977 7.766278 TCTTCTTCTCCTGATTAATTCGAAAGG 59.234 37.037 0.00 3.14 0.00 3.11
907 982 8.709386 TTCTTCTTCTTCTCCTGATTAATTCG 57.291 34.615 0.00 0.00 0.00 3.34
911 986 9.094578 TCTTCTTCTTCTTCTTCTCCTGATTAA 57.905 33.333 0.00 0.00 0.00 1.40
916 991 6.588719 TCTCTTCTTCTTCTTCTTCTCCTG 57.411 41.667 0.00 0.00 0.00 3.86
939 1017 5.954150 AGAGAGAGAGATTGAGCTTCTTCTT 59.046 40.000 0.00 0.00 0.00 2.52
948 1026 6.041865 AGAGAGAGAGAGAGAGAGAGATTGAG 59.958 46.154 0.00 0.00 0.00 3.02
963 1041 4.350816 CCTCCTCCAATAGAGAGAGAGAGA 59.649 50.000 8.75 0.00 46.50 3.10
976 1054 3.498614 TCTTCTTCCTCCTCCTCCAAT 57.501 47.619 0.00 0.00 0.00 3.16
977 1055 3.177228 CTTCTTCTTCCTCCTCCTCCAA 58.823 50.000 0.00 0.00 0.00 3.53
978 1056 2.560841 CCTTCTTCTTCCTCCTCCTCCA 60.561 54.545 0.00 0.00 0.00 3.86
1264 1353 1.627297 GGGATCTGGACCAGGACCAC 61.627 65.000 26.91 17.79 32.37 4.16
1351 1454 9.991906 CAGTGGTCATGCATATCATATCATATA 57.008 33.333 0.00 0.00 33.19 0.86
1352 1455 8.491958 ACAGTGGTCATGCATATCATATCATAT 58.508 33.333 0.00 0.00 33.19 1.78
1353 1456 7.767198 CACAGTGGTCATGCATATCATATCATA 59.233 37.037 0.00 0.00 33.19 2.15
1377 1480 4.565531 GCAAGCAACAGCCATCAC 57.434 55.556 0.00 0.00 0.00 3.06
1452 1575 0.389817 TAGCGTTACCAGCAGCAGTG 60.390 55.000 0.00 0.00 37.01 3.66
1453 1576 0.108615 CTAGCGTTACCAGCAGCAGT 60.109 55.000 0.00 0.00 37.01 4.40
1564 1732 4.877882 TTGTTGTGCGTGCGTGCG 62.878 61.111 0.00 0.00 37.81 5.34
1568 1740 1.057566 GCAATATTTGTTGTGCGTGCG 59.942 47.619 0.00 0.00 0.00 5.34
1601 1773 1.933021 TTGGATGGACGTACAGGAGT 58.067 50.000 6.62 0.00 0.00 3.85
1630 1830 9.928236 GCTAGCTGTTTCTCTTTTATTATCTTG 57.072 33.333 7.70 0.00 0.00 3.02
1704 1905 1.541147 TCGGACAAAGTACCACCGTAG 59.459 52.381 0.00 0.00 43.36 3.51
1711 1926 1.677820 CCCCACATCGGACAAAGTACC 60.678 57.143 0.00 0.00 36.56 3.34
1763 2298 2.114670 GCGGTACACCTGCATGCAT 61.115 57.895 22.97 9.00 36.21 3.96
2915 4234 0.891373 ATAGCCCCATGACGATCTCG 59.109 55.000 0.00 0.00 46.33 4.04
3059 4378 7.985752 ACGGGATTTTAATTTGTTTTGTTGGTA 59.014 29.630 0.00 0.00 0.00 3.25
3060 4379 6.824196 ACGGGATTTTAATTTGTTTTGTTGGT 59.176 30.769 0.00 0.00 0.00 3.67
3074 4393 2.027003 CGGCAGGTACGGGATTTTAA 57.973 50.000 0.00 0.00 0.00 1.52
3075 4394 3.764658 CGGCAGGTACGGGATTTTA 57.235 52.632 0.00 0.00 0.00 1.52
3096 4419 2.288518 GCTTATTCACTAGGGAGAGGCG 60.289 54.545 0.00 0.00 0.00 5.52
3103 4426 6.626302 GCTGATAGTAGCTTATTCACTAGGG 58.374 44.000 0.00 0.00 40.52 3.53
3120 4443 8.080417 AGTATGCAATGCAAATTAAGCTGATAG 58.920 33.333 13.45 0.00 43.62 2.08
3121 4444 7.944061 AGTATGCAATGCAAATTAAGCTGATA 58.056 30.769 13.45 0.00 43.62 2.15
3122 4445 6.812998 AGTATGCAATGCAAATTAAGCTGAT 58.187 32.000 13.45 0.00 43.62 2.90
3123 4446 6.211587 AGTATGCAATGCAAATTAAGCTGA 57.788 33.333 13.45 0.00 43.62 4.26
3154 4484 1.841663 CGGTCGGTCCTGCAAAACAG 61.842 60.000 0.00 0.00 46.77 3.16
3161 4491 1.359459 GATTGTTCGGTCGGTCCTGC 61.359 60.000 0.00 0.00 0.00 4.85
3169 4499 6.460781 TGGTATATGTATGGATTGTTCGGTC 58.539 40.000 0.00 0.00 0.00 4.79
3180 4510 8.862325 TGGAAATTAAGCTGGTATATGTATGG 57.138 34.615 0.00 0.00 0.00 2.74
3244 4589 7.459795 TTGGTTCTGTACATGATGCAAAATA 57.540 32.000 0.00 0.00 0.00 1.40
3291 4640 5.585445 AGAATGCTCATCTGCTTTGAACTAG 59.415 40.000 0.00 0.00 31.80 2.57
3433 4806 6.544197 TCTTCAACACTGTAGGTTTTGCAATA 59.456 34.615 0.00 0.00 36.05 1.90
3444 4817 7.895975 TCTTTGATCATCTTCAACACTGTAG 57.104 36.000 0.00 0.00 35.42 2.74
3465 4838 2.514160 AGGTTTGACTTGTCCCCTTCTT 59.486 45.455 0.00 0.00 0.00 2.52
3467 4840 2.658807 AGGTTTGACTTGTCCCCTTC 57.341 50.000 0.00 0.00 0.00 3.46
3505 4885 3.740044 GCGAATTGCAGTAGCTGTTAA 57.260 42.857 0.00 0.00 45.45 2.01
3717 5098 5.964958 TTGCCTTTCCTGAATTTCTACTG 57.035 39.130 0.00 0.00 0.00 2.74
3722 5103 5.659440 TGGTATTGCCTTTCCTGAATTTC 57.341 39.130 0.00 0.00 38.35 2.17
3728 5109 4.706476 TCTGAAATGGTATTGCCTTTCCTG 59.294 41.667 10.70 6.47 35.45 3.86
3900 5281 1.696063 ACACATTTTCTGGCAGCTGT 58.304 45.000 16.64 7.74 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.