Multiple sequence alignment - TraesCS2A01G530800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G530800 chr2A 100.000 5252 0 0 1 5252 748440193 748445444 0.000000e+00 9699.0
1 TraesCS2A01G530800 chr2A 86.047 344 27 11 24 350 748402614 748402953 3.010000e-92 350.0
2 TraesCS2A01G530800 chr2A 86.765 68 7 2 688 755 748416349 748416414 2.030000e-09 75.0
3 TraesCS2A01G530800 chr2D 95.106 2677 90 21 891 3541 617890851 617893512 0.000000e+00 4180.0
4 TraesCS2A01G530800 chr2D 92.075 1754 57 21 3561 5252 617893799 617895532 0.000000e+00 2394.0
5 TraesCS2A01G530800 chr2D 94.563 423 11 3 1 412 617889945 617890366 1.230000e-180 643.0
6 TraesCS2A01G530800 chr2D 91.176 306 25 2 450 755 617890367 617890670 1.050000e-111 414.0
7 TraesCS2A01G530800 chr2D 85.337 341 33 10 24 350 617549119 617549456 2.340000e-88 337.0
8 TraesCS2A01G530800 chr2D 88.265 196 16 4 6 194 617733544 617733739 1.470000e-55 228.0
9 TraesCS2A01G530800 chr2D 88.889 63 6 1 688 750 617549603 617549664 5.640000e-10 76.8
10 TraesCS2A01G530800 chr2B 92.959 1747 61 23 3566 5252 753802252 753800508 0.000000e+00 2488.0
11 TraesCS2A01G530800 chr2B 92.739 1212 53 15 858 2043 753805206 753804004 0.000000e+00 1718.0
12 TraesCS2A01G530800 chr2B 96.973 892 22 5 2630 3521 753803437 753802551 0.000000e+00 1493.0
13 TraesCS2A01G530800 chr2B 88.730 701 33 19 3997 4653 790453723 790454421 0.000000e+00 815.0
14 TraesCS2A01G530800 chr2B 95.332 407 18 1 2045 2450 753803839 753803433 0.000000e+00 645.0
15 TraesCS2A01G530800 chr2B 82.759 261 23 16 229 489 753805834 753805596 4.120000e-51 213.0
16 TraesCS2A01G530800 chr7B 88.968 698 30 16 4000 4653 382088142 382087448 0.000000e+00 819.0
17 TraesCS2A01G530800 chr7B 88.286 700 37 18 3997 4653 554075234 554075931 0.000000e+00 797.0
18 TraesCS2A01G530800 chr7B 88.829 555 47 11 4710 5252 745144748 745144197 0.000000e+00 667.0
19 TraesCS2A01G530800 chr7B 88.889 144 13 2 193 336 7810675 7810535 1.940000e-39 174.0
20 TraesCS2A01G530800 chr6A 88.873 701 31 16 3997 4653 477475522 477476219 0.000000e+00 819.0
21 TraesCS2A01G530800 chr6A 88.555 699 32 16 4000 4653 239256641 239255946 0.000000e+00 804.0
22 TraesCS2A01G530800 chr4A 88.857 700 33 15 3997 4653 29478166 29478863 0.000000e+00 819.0
23 TraesCS2A01G530800 chr4A 88.395 698 34 16 4000 4653 51046821 51046127 0.000000e+00 797.0
24 TraesCS2A01G530800 chr6B 88.730 701 32 16 3997 4653 714156391 714157088 0.000000e+00 813.0
25 TraesCS2A01G530800 chr6B 88.682 698 32 16 4000 4653 40510464 40509770 0.000000e+00 808.0
26 TraesCS2A01G530800 chr1B 88.588 701 33 16 3997 4653 82987537 82988234 0.000000e+00 808.0
27 TraesCS2A01G530800 chr7A 88.092 697 38 18 4000 4653 687183538 687182844 0.000000e+00 785.0
28 TraesCS2A01G530800 chr7D 89.111 551 41 11 4710 5252 632163997 632163458 0.000000e+00 667.0
29 TraesCS2A01G530800 chr1A 88.504 548 44 10 4710 5252 6422214 6422747 0.000000e+00 645.0
30 TraesCS2A01G530800 chr5D 90.681 279 24 2 1161 1438 451684363 451684640 2.310000e-98 370.0
31 TraesCS2A01G530800 chr5B 90.036 281 26 2 1159 1438 551509137 551509416 3.870000e-96 363.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G530800 chr2A 748440193 748445444 5251 False 9699.00 9699 100.0000 1 5252 1 chr2A.!!$F3 5251
1 TraesCS2A01G530800 chr2D 617889945 617895532 5587 False 1907.75 4180 93.2300 1 5252 4 chr2D.!!$F3 5251
2 TraesCS2A01G530800 chr2D 617549119 617549664 545 False 206.90 337 87.1130 24 750 2 chr2D.!!$F2 726
3 TraesCS2A01G530800 chr2B 753800508 753805834 5326 True 1311.40 2488 92.1524 229 5252 5 chr2B.!!$R1 5023
4 TraesCS2A01G530800 chr2B 790453723 790454421 698 False 815.00 815 88.7300 3997 4653 1 chr2B.!!$F1 656
5 TraesCS2A01G530800 chr7B 382087448 382088142 694 True 819.00 819 88.9680 4000 4653 1 chr7B.!!$R2 653
6 TraesCS2A01G530800 chr7B 554075234 554075931 697 False 797.00 797 88.2860 3997 4653 1 chr7B.!!$F1 656
7 TraesCS2A01G530800 chr7B 745144197 745144748 551 True 667.00 667 88.8290 4710 5252 1 chr7B.!!$R3 542
8 TraesCS2A01G530800 chr6A 477475522 477476219 697 False 819.00 819 88.8730 3997 4653 1 chr6A.!!$F1 656
9 TraesCS2A01G530800 chr6A 239255946 239256641 695 True 804.00 804 88.5550 4000 4653 1 chr6A.!!$R1 653
10 TraesCS2A01G530800 chr4A 29478166 29478863 697 False 819.00 819 88.8570 3997 4653 1 chr4A.!!$F1 656
11 TraesCS2A01G530800 chr4A 51046127 51046821 694 True 797.00 797 88.3950 4000 4653 1 chr4A.!!$R1 653
12 TraesCS2A01G530800 chr6B 714156391 714157088 697 False 813.00 813 88.7300 3997 4653 1 chr6B.!!$F1 656
13 TraesCS2A01G530800 chr6B 40509770 40510464 694 True 808.00 808 88.6820 4000 4653 1 chr6B.!!$R1 653
14 TraesCS2A01G530800 chr1B 82987537 82988234 697 False 808.00 808 88.5880 3997 4653 1 chr1B.!!$F1 656
15 TraesCS2A01G530800 chr7A 687182844 687183538 694 True 785.00 785 88.0920 4000 4653 1 chr7A.!!$R1 653
16 TraesCS2A01G530800 chr7D 632163458 632163997 539 True 667.00 667 89.1110 4710 5252 1 chr7D.!!$R1 542
17 TraesCS2A01G530800 chr1A 6422214 6422747 533 False 645.00 645 88.5040 4710 5252 1 chr1A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 923 0.178944 TTTCCTCGTCAGGGAGTGGA 60.179 55.0 0.00 0.0 40.80 4.02 F
868 1203 0.320421 GTGGGCGCTGAACTGAACTA 60.320 55.0 7.64 0.0 0.00 2.24 F
1614 2010 1.816074 TTGTCCCAATTGACGCCTAC 58.184 50.0 7.12 0.0 38.11 3.18 F
2043 2444 2.031683 CCCTTTTCGTTCGATGGCATAC 59.968 50.0 0.00 0.0 0.00 2.39 F
3588 4427 0.736325 CTTTTCCCGTGTCGAGCGAT 60.736 55.0 10.43 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2670 0.915364 GGCCTGAAGAACCTGGAGAT 59.085 55.000 0.00 0.0 0.00 2.75 R
2657 3222 3.629142 AGAGGGTTAGATGAAAACGGG 57.371 47.619 0.00 0.0 0.00 5.28 R
3559 4131 0.400594 ACGGGAAAAGGAACCAGAGG 59.599 55.000 0.00 0.0 0.00 3.69 R
3698 4542 0.390124 CCAACCTTGTGCAATGCTGT 59.610 50.000 6.82 0.0 0.00 4.40 R
4594 5490 0.102120 TTTGCTGTTTTGCAGGACCG 59.898 50.000 0.00 0.0 45.34 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
319 341 0.827368 GCAGTCTCCCCAGTAAGAGG 59.173 60.000 0.00 0.00 0.00 3.69
412 434 3.263489 ACAGAGCATGAAGGATCAGTG 57.737 47.619 0.00 0.00 39.39 3.66
413 435 2.570752 ACAGAGCATGAAGGATCAGTGT 59.429 45.455 0.00 0.00 39.39 3.55
414 436 3.008813 ACAGAGCATGAAGGATCAGTGTT 59.991 43.478 0.00 0.00 39.39 3.32
415 437 3.374367 CAGAGCATGAAGGATCAGTGTTG 59.626 47.826 0.00 0.00 39.39 3.33
416 438 3.008813 AGAGCATGAAGGATCAGTGTTGT 59.991 43.478 0.00 0.00 39.39 3.32
417 439 4.223700 AGAGCATGAAGGATCAGTGTTGTA 59.776 41.667 0.00 0.00 39.39 2.41
418 440 4.256920 AGCATGAAGGATCAGTGTTGTAC 58.743 43.478 0.00 0.00 39.39 2.90
419 441 3.375299 GCATGAAGGATCAGTGTTGTACC 59.625 47.826 0.00 0.00 39.39 3.34
420 442 3.313012 TGAAGGATCAGTGTTGTACCG 57.687 47.619 0.00 0.00 0.00 4.02
421 443 2.000447 GAAGGATCAGTGTTGTACCGC 59.000 52.381 0.00 0.00 0.00 5.68
422 444 0.249398 AGGATCAGTGTTGTACCGCC 59.751 55.000 0.00 0.00 0.00 6.13
423 445 1.082117 GGATCAGTGTTGTACCGCCG 61.082 60.000 0.00 0.00 0.00 6.46
424 446 1.693083 GATCAGTGTTGTACCGCCGC 61.693 60.000 0.00 0.00 0.00 6.53
425 447 2.167398 ATCAGTGTTGTACCGCCGCT 62.167 55.000 0.00 0.00 0.00 5.52
426 448 2.357034 AGTGTTGTACCGCCGCTG 60.357 61.111 0.00 0.00 0.00 5.18
427 449 3.419759 GTGTTGTACCGCCGCTGG 61.420 66.667 0.00 0.44 0.00 4.85
428 450 4.690719 TGTTGTACCGCCGCTGGG 62.691 66.667 6.28 0.00 0.00 4.45
429 451 4.382320 GTTGTACCGCCGCTGGGA 62.382 66.667 6.28 0.00 34.06 4.37
430 452 3.395702 TTGTACCGCCGCTGGGAT 61.396 61.111 6.28 0.00 34.06 3.85
431 453 2.961893 TTGTACCGCCGCTGGGATT 61.962 57.895 6.28 0.00 34.06 3.01
432 454 2.588034 GTACCGCCGCTGGGATTC 60.588 66.667 6.28 0.00 34.06 2.52
433 455 2.762459 TACCGCCGCTGGGATTCT 60.762 61.111 6.28 0.00 34.06 2.40
434 456 2.792947 TACCGCCGCTGGGATTCTC 61.793 63.158 6.28 0.00 34.06 2.87
435 457 4.161295 CCGCCGCTGGGATTCTCA 62.161 66.667 0.00 0.00 34.06 3.27
436 458 2.892425 CGCCGCTGGGATTCTCAC 60.892 66.667 0.00 0.00 34.06 3.51
437 459 2.268920 GCCGCTGGGATTCTCACA 59.731 61.111 0.00 0.00 34.06 3.58
438 460 2.109126 GCCGCTGGGATTCTCACAC 61.109 63.158 0.00 0.00 34.06 3.82
439 461 1.599047 CCGCTGGGATTCTCACACT 59.401 57.895 0.00 0.00 34.06 3.55
440 462 0.824109 CCGCTGGGATTCTCACACTA 59.176 55.000 0.00 0.00 34.06 2.74
441 463 1.471676 CCGCTGGGATTCTCACACTAC 60.472 57.143 0.00 0.00 34.06 2.73
442 464 1.471676 CGCTGGGATTCTCACACTACC 60.472 57.143 0.00 0.00 0.00 3.18
443 465 1.555075 GCTGGGATTCTCACACTACCA 59.445 52.381 0.00 0.00 0.00 3.25
444 466 2.419297 GCTGGGATTCTCACACTACCAG 60.419 54.545 0.00 0.00 45.11 4.00
445 467 3.099905 CTGGGATTCTCACACTACCAGA 58.900 50.000 0.00 0.00 45.14 3.86
446 468 3.515502 CTGGGATTCTCACACTACCAGAA 59.484 47.826 0.00 0.00 45.14 3.02
447 469 3.907474 TGGGATTCTCACACTACCAGAAA 59.093 43.478 0.00 0.00 30.07 2.52
448 470 4.254492 GGGATTCTCACACTACCAGAAAC 58.746 47.826 0.00 0.00 30.07 2.78
461 513 9.959721 ACACTACCAGAAACATTTAATACATCT 57.040 29.630 0.00 0.00 0.00 2.90
517 569 4.080015 GCTAGAGCTATCAGAGGGGAGATA 60.080 50.000 0.00 0.00 38.21 1.98
521 573 4.183116 AGCTATCAGAGGGGAGATAGAGA 58.817 47.826 12.27 0.00 44.03 3.10
531 583 2.292292 GGGAGATAGAGAGAGCGTGAAC 59.708 54.545 0.00 0.00 0.00 3.18
582 634 4.103153 GGATTCTCATCCCAGGAACATGTA 59.897 45.833 0.00 0.00 43.29 2.29
584 636 3.041211 TCTCATCCCAGGAACATGTAGG 58.959 50.000 0.00 0.00 0.00 3.18
620 672 1.609932 CGCTGTGCATTTGCTGTTAG 58.390 50.000 3.94 0.00 42.66 2.34
634 686 3.117663 TGCTGTTAGGGTTCTCCAGTTTT 60.118 43.478 0.00 0.00 38.24 2.43
635 687 4.103469 TGCTGTTAGGGTTCTCCAGTTTTA 59.897 41.667 0.00 0.00 38.24 1.52
640 692 6.492087 TGTTAGGGTTCTCCAGTTTTATTTGG 59.508 38.462 0.00 0.00 38.24 3.28
652 704 5.634859 CAGTTTTATTTGGGTTGCTGATGAC 59.365 40.000 0.00 0.00 0.00 3.06
680 732 2.806608 AAGCCATTTCTTGTGTGCTG 57.193 45.000 0.00 0.00 0.00 4.41
699 751 2.273557 TGATGACATGATGAGTGCGTG 58.726 47.619 0.00 0.00 0.00 5.34
708 760 2.224185 TGATGAGTGCGTGGTTACAAGT 60.224 45.455 0.00 0.00 0.00 3.16
776 879 2.918131 GCGAGCTTTTGTCACATTGACC 60.918 50.000 3.91 0.00 46.40 4.02
785 888 0.677288 TCACATTGACCGACGACCTT 59.323 50.000 0.00 0.00 0.00 3.50
786 889 1.068474 CACATTGACCGACGACCTTC 58.932 55.000 0.00 0.00 0.00 3.46
799 902 1.066071 CGACCTTCCCTTCCCTTCTTC 60.066 57.143 0.00 0.00 0.00 2.87
801 904 1.132036 ACCTTCCCTTCCCTTCTTCCT 60.132 52.381 0.00 0.00 0.00 3.36
802 905 1.996291 CCTTCCCTTCCCTTCTTCCTT 59.004 52.381 0.00 0.00 0.00 3.36
804 907 3.562393 CCTTCCCTTCCCTTCTTCCTTTC 60.562 52.174 0.00 0.00 0.00 2.62
805 908 1.993301 TCCCTTCCCTTCTTCCTTTCC 59.007 52.381 0.00 0.00 0.00 3.13
806 909 1.996291 CCCTTCCCTTCTTCCTTTCCT 59.004 52.381 0.00 0.00 0.00 3.36
807 910 2.025793 CCCTTCCCTTCTTCCTTTCCTC 60.026 54.545 0.00 0.00 0.00 3.71
808 911 2.355209 CCTTCCCTTCTTCCTTTCCTCG 60.355 54.545 0.00 0.00 0.00 4.63
809 912 2.025636 TCCCTTCTTCCTTTCCTCGT 57.974 50.000 0.00 0.00 0.00 4.18
810 913 1.900486 TCCCTTCTTCCTTTCCTCGTC 59.100 52.381 0.00 0.00 0.00 4.20
811 914 1.623811 CCCTTCTTCCTTTCCTCGTCA 59.376 52.381 0.00 0.00 0.00 4.35
813 916 2.354203 CCTTCTTCCTTTCCTCGTCAGG 60.354 54.545 0.00 0.00 42.01 3.86
814 917 1.267121 TCTTCCTTTCCTCGTCAGGG 58.733 55.000 0.00 0.00 40.80 4.45
815 918 1.203137 TCTTCCTTTCCTCGTCAGGGA 60.203 52.381 0.00 0.00 40.80 4.20
820 923 0.178944 TTTCCTCGTCAGGGAGTGGA 60.179 55.000 0.00 0.00 40.80 4.02
821 924 0.898789 TTCCTCGTCAGGGAGTGGAC 60.899 60.000 0.00 0.00 40.80 4.02
830 933 1.519455 GGGAGTGGACGCTGAATCG 60.519 63.158 0.00 0.00 0.00 3.34
831 934 1.511305 GGAGTGGACGCTGAATCGA 59.489 57.895 0.00 0.00 0.00 3.59
868 1203 0.320421 GTGGGCGCTGAACTGAACTA 60.320 55.000 7.64 0.00 0.00 2.24
921 1278 2.739996 CGGAGAAGCAGGCCCAGAT 61.740 63.158 0.00 0.00 0.00 2.90
1465 1829 6.893005 GCAAGGGTATGTATCTATCTACTCCT 59.107 42.308 0.00 0.00 0.00 3.69
1568 1964 7.096884 GTTGATTTTTCCCAACCTAGGATAC 57.903 40.000 17.98 0.00 37.32 2.24
1614 2010 1.816074 TTGTCCCAATTGACGCCTAC 58.184 50.000 7.12 0.00 38.11 3.18
1634 2030 6.986817 GCCTACTAAGTGCATTTCTTCATCTA 59.013 38.462 0.00 0.00 0.00 1.98
1665 2065 6.128145 TGTGAATGTCTCTCTCTAGAAAGTCG 60.128 42.308 0.00 0.00 31.77 4.18
1728 2128 2.601504 GCGATACGAGCGTATGACAAGA 60.602 50.000 18.97 0.00 40.93 3.02
1826 2226 2.827921 GCCCATTCTGATTCACCTTGTT 59.172 45.455 0.00 0.00 0.00 2.83
1829 2229 4.397417 CCCATTCTGATTCACCTTGTTCTC 59.603 45.833 0.00 0.00 0.00 2.87
1843 2243 6.312426 CACCTTGTTCTCTATGATTCACACTC 59.688 42.308 0.00 0.00 0.00 3.51
2003 2403 7.770897 CACTTCACTATTTGCCCTCTAATTACT 59.229 37.037 0.00 0.00 0.00 2.24
2030 2431 3.855689 AAATCATGCTGTCCCTTTTCG 57.144 42.857 0.00 0.00 0.00 3.46
2033 2434 2.151202 TCATGCTGTCCCTTTTCGTTC 58.849 47.619 0.00 0.00 0.00 3.95
2043 2444 2.031683 CCCTTTTCGTTCGATGGCATAC 59.968 50.000 0.00 0.00 0.00 2.39
2106 2670 3.230976 TGTGCCTCACTGTTCTCTCTTA 58.769 45.455 0.00 0.00 35.11 2.10
2153 2717 4.710865 TGGATATGTACTCCGTACCACAAA 59.289 41.667 0.00 0.00 38.14 2.83
2228 2792 3.404899 TCCACCTTCCGATTTGTTGTAC 58.595 45.455 0.00 0.00 0.00 2.90
2267 2831 4.520492 CACATCCTACTTTGTTTCAAGCCT 59.480 41.667 0.00 0.00 0.00 4.58
2280 2844 5.106712 TGTTTCAAGCCTAACTTTATCAGCG 60.107 40.000 0.00 0.00 36.04 5.18
2297 2861 4.392047 TCAGCGATGGCATTCTGAATAAT 58.608 39.130 22.65 0.00 43.41 1.28
2515 3080 5.715070 TGTTGATTTTTGTTGGACTTCGTT 58.285 33.333 0.00 0.00 0.00 3.85
2543 3108 7.715249 TGTTTATCCTTTACTATGCAGTCCATC 59.285 37.037 0.00 0.00 36.14 3.51
2546 3111 6.656632 TCCTTTACTATGCAGTCCATCTAG 57.343 41.667 0.00 0.00 36.14 2.43
2548 3113 6.839134 TCCTTTACTATGCAGTCCATCTAGAA 59.161 38.462 0.00 0.00 36.14 2.10
2551 3116 9.553064 CTTTACTATGCAGTCCATCTAGAAATT 57.447 33.333 0.00 0.00 36.14 1.82
2553 3118 9.905713 TTACTATGCAGTCCATCTAGAAATTTT 57.094 29.630 0.00 0.00 36.14 1.82
2560 3125 7.490402 GCAGTCCATCTAGAAATTTTGGAAATG 59.510 37.037 12.57 14.21 38.16 2.32
2585 3150 4.982295 TCACTGAGTGTTCTTTGTATGACG 59.018 41.667 12.93 0.00 34.79 4.35
2657 3222 9.636965 GCTTGTTTCTCAATTTGTGATTAAAAC 57.363 29.630 2.27 4.92 35.07 2.43
2663 3228 7.493367 TCTCAATTTGTGATTAAAACCCGTTT 58.507 30.769 0.00 0.00 35.07 3.60
2727 3292 6.983890 GTCATTACAAAACCACAATCCTGTTT 59.016 34.615 0.00 0.00 31.64 2.83
2910 3475 6.070656 TGAGAAGGAATTGATTTCAACTGGT 58.929 36.000 0.00 0.00 38.86 4.00
2925 3490 2.255406 ACTGGTCTGTCATCTGAAGCT 58.745 47.619 0.00 0.00 0.00 3.74
2934 3499 2.234908 GTCATCTGAAGCTGTACAGGGT 59.765 50.000 23.95 7.98 35.20 4.34
3008 3573 2.419673 TGGCTTTAGCATTCGACATGTG 59.580 45.455 1.15 0.00 44.36 3.21
3017 3582 4.935205 AGCATTCGACATGTGCTTAAACTA 59.065 37.500 1.15 0.00 46.29 2.24
3352 3917 8.811017 TCAAGTGGCATTCCATCTTTTATTTTA 58.189 29.630 0.00 0.00 45.62 1.52
3353 3918 9.603921 CAAGTGGCATTCCATCTTTTATTTTAT 57.396 29.630 0.00 0.00 45.62 1.40
3354 3919 9.603921 AAGTGGCATTCCATCTTTTATTTTATG 57.396 29.630 0.00 0.00 45.62 1.90
3541 4113 6.077993 AGATGCTGTTATAGTGGAGGTATGA 58.922 40.000 0.00 0.00 0.00 2.15
3542 4114 6.728164 AGATGCTGTTATAGTGGAGGTATGAT 59.272 38.462 0.00 0.00 0.00 2.45
3543 4115 7.895962 AGATGCTGTTATAGTGGAGGTATGATA 59.104 37.037 0.00 0.00 0.00 2.15
3544 4116 7.228314 TGCTGTTATAGTGGAGGTATGATAC 57.772 40.000 0.00 0.00 0.00 2.24
3545 4117 7.010771 TGCTGTTATAGTGGAGGTATGATACT 58.989 38.462 2.24 0.00 0.00 2.12
3546 4118 8.168058 TGCTGTTATAGTGGAGGTATGATACTA 58.832 37.037 2.24 0.00 0.00 1.82
3547 4119 9.191479 GCTGTTATAGTGGAGGTATGATACTAT 57.809 37.037 2.24 0.00 37.99 2.12
3552 4124 6.936968 AGTGGAGGTATGATACTATTTCCC 57.063 41.667 2.24 1.40 0.00 3.97
3553 4125 5.785940 AGTGGAGGTATGATACTATTTCCCC 59.214 44.000 2.24 0.00 0.00 4.81
3554 4126 5.045797 GTGGAGGTATGATACTATTTCCCCC 60.046 48.000 2.24 0.00 0.00 5.40
3588 4427 0.736325 CTTTTCCCGTGTCGAGCGAT 60.736 55.000 10.43 0.00 0.00 4.58
3863 4707 1.696063 ACACATTTTCTGGCAGCTGT 58.304 45.000 16.64 7.74 0.00 4.40
4035 4879 4.706476 TCTGAAATGGTATTGCCTTTCCTG 59.294 41.667 10.70 6.47 35.45 3.86
4041 4885 5.659440 TGGTATTGCCTTTCCTGAATTTC 57.341 39.130 0.00 0.00 38.35 2.17
4046 4890 5.964958 TTGCCTTTCCTGAATTTCTACTG 57.035 39.130 0.00 0.00 0.00 2.74
4258 5103 3.740044 GCGAATTGCAGTAGCTGTTAA 57.260 42.857 0.00 0.00 45.45 2.01
4296 5148 2.658807 AGGTTTGACTTGTCCCCTTC 57.341 50.000 0.00 0.00 0.00 3.46
4297 5149 2.136026 AGGTTTGACTTGTCCCCTTCT 58.864 47.619 0.00 0.00 0.00 2.85
4298 5150 2.514160 AGGTTTGACTTGTCCCCTTCTT 59.486 45.455 0.00 0.00 0.00 2.52
4319 5171 7.895975 TCTTTGATCATCTTCAACACTGTAG 57.104 36.000 0.00 0.00 35.42 2.74
4330 5182 6.544197 TCTTCAACACTGTAGGTTTTGCAATA 59.456 34.615 0.00 0.00 36.05 1.90
4472 5348 5.585445 AGAATGCTCATCTGCTTTGAACTAG 59.415 40.000 0.00 0.00 31.80 2.57
4519 5396 7.459795 TTGGTTCTGTACATGATGCAAAATA 57.540 32.000 0.00 0.00 0.00 1.40
4583 5479 8.862325 TGGAAATTAAGCTGGTATATGTATGG 57.138 34.615 0.00 0.00 0.00 2.74
4594 5490 6.460781 TGGTATATGTATGGATTGTTCGGTC 58.539 40.000 0.00 0.00 0.00 4.79
4602 5498 1.359459 GATTGTTCGGTCGGTCCTGC 61.359 60.000 0.00 0.00 0.00 4.85
4609 5505 1.841663 CGGTCGGTCCTGCAAAACAG 61.842 60.000 0.00 0.00 46.77 3.16
4640 5543 6.211587 AGTATGCAATGCAAATTAAGCTGA 57.788 33.333 13.45 0.00 43.62 4.26
4641 5544 6.812998 AGTATGCAATGCAAATTAAGCTGAT 58.187 32.000 13.45 0.00 43.62 2.90
4642 5545 7.944061 AGTATGCAATGCAAATTAAGCTGATA 58.056 30.769 13.45 0.00 43.62 2.15
4643 5546 8.080417 AGTATGCAATGCAAATTAAGCTGATAG 58.920 33.333 13.45 0.00 43.62 2.08
4660 5563 6.626302 GCTGATAGTAGCTTATTCACTAGGG 58.374 44.000 0.00 0.00 40.52 3.53
4667 5570 2.288518 GCTTATTCACTAGGGAGAGGCG 60.289 54.545 0.00 0.00 0.00 5.52
4688 5591 3.764658 CGGCAGGTACGGGATTTTA 57.235 52.632 0.00 0.00 0.00 1.52
4689 5592 2.027003 CGGCAGGTACGGGATTTTAA 57.973 50.000 0.00 0.00 0.00 1.52
4703 5610 6.824196 ACGGGATTTTAATTTGTTTTGTTGGT 59.176 30.769 0.00 0.00 0.00 3.67
4704 5611 7.985752 ACGGGATTTTAATTTGTTTTGTTGGTA 59.014 29.630 0.00 0.00 0.00 3.25
4848 5755 0.891373 ATAGCCCCATGACGATCTCG 59.109 55.000 0.00 0.00 46.33 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 5.871396 AAAACACTACTGTTGAGAGAGGA 57.129 39.130 0.00 0.00 39.88 3.71
165 174 9.334693 GATTTTAGATGACAACACAGTTCAATC 57.665 33.333 0.00 0.00 0.00 2.67
350 372 4.183101 CTCTAGCTGGAGCAGAAAGAAAG 58.817 47.826 14.70 0.00 45.16 2.62
412 434 3.675619 ATCCCAGCGGCGGTACAAC 62.676 63.158 12.74 0.00 0.00 3.32
413 435 2.862674 GAATCCCAGCGGCGGTACAA 62.863 60.000 12.74 0.00 0.00 2.41
414 436 3.379865 GAATCCCAGCGGCGGTACA 62.380 63.158 12.74 0.00 0.00 2.90
415 437 2.588034 GAATCCCAGCGGCGGTAC 60.588 66.667 12.74 0.00 0.00 3.34
416 438 2.762459 AGAATCCCAGCGGCGGTA 60.762 61.111 12.74 0.00 0.00 4.02
417 439 4.162690 GAGAATCCCAGCGGCGGT 62.163 66.667 5.44 5.44 0.00 5.68
418 440 4.161295 TGAGAATCCCAGCGGCGG 62.161 66.667 9.78 0.00 0.00 6.13
419 441 2.892425 GTGAGAATCCCAGCGGCG 60.892 66.667 0.51 0.51 0.00 6.46
420 442 2.109126 GTGTGAGAATCCCAGCGGC 61.109 63.158 0.00 0.00 0.00 6.53
421 443 0.824109 TAGTGTGAGAATCCCAGCGG 59.176 55.000 0.00 0.00 0.00 5.52
422 444 1.471676 GGTAGTGTGAGAATCCCAGCG 60.472 57.143 0.00 0.00 0.00 5.18
423 445 1.555075 TGGTAGTGTGAGAATCCCAGC 59.445 52.381 0.00 0.00 0.00 4.85
424 446 3.099905 TCTGGTAGTGTGAGAATCCCAG 58.900 50.000 0.00 0.00 38.09 4.45
425 447 3.184382 TCTGGTAGTGTGAGAATCCCA 57.816 47.619 0.00 0.00 0.00 4.37
426 448 4.254492 GTTTCTGGTAGTGTGAGAATCCC 58.746 47.826 0.00 0.00 0.00 3.85
427 449 4.894784 TGTTTCTGGTAGTGTGAGAATCC 58.105 43.478 0.00 0.00 0.00 3.01
428 450 7.440523 AAATGTTTCTGGTAGTGTGAGAATC 57.559 36.000 0.00 0.00 0.00 2.52
429 451 8.918202 TTAAATGTTTCTGGTAGTGTGAGAAT 57.082 30.769 0.00 0.00 0.00 2.40
430 452 8.918202 ATTAAATGTTTCTGGTAGTGTGAGAA 57.082 30.769 0.00 0.00 0.00 2.87
431 453 9.431887 GTATTAAATGTTTCTGGTAGTGTGAGA 57.568 33.333 0.00 0.00 0.00 3.27
432 454 9.214957 TGTATTAAATGTTTCTGGTAGTGTGAG 57.785 33.333 0.00 0.00 0.00 3.51
433 455 9.733556 ATGTATTAAATGTTTCTGGTAGTGTGA 57.266 29.630 0.00 0.00 0.00 3.58
434 456 9.988350 GATGTATTAAATGTTTCTGGTAGTGTG 57.012 33.333 0.00 0.00 0.00 3.82
435 457 9.959721 AGATGTATTAAATGTTTCTGGTAGTGT 57.040 29.630 0.00 0.00 0.00 3.55
437 459 9.959721 ACAGATGTATTAAATGTTTCTGGTAGT 57.040 29.630 0.00 0.00 34.78 2.73
440 462 9.295825 TGAACAGATGTATTAAATGTTTCTGGT 57.704 29.630 0.00 0.00 34.41 4.00
512 564 2.867368 TCGTTCACGCTCTCTCTATCTC 59.133 50.000 0.00 0.00 39.60 2.75
517 569 1.400142 CTGATCGTTCACGCTCTCTCT 59.600 52.381 4.95 0.00 39.60 3.10
521 573 2.061773 CAAACTGATCGTTCACGCTCT 58.938 47.619 4.95 0.00 39.60 4.09
574 626 3.573491 GCGCCGCCCTACATGTTC 61.573 66.667 2.30 0.00 0.00 3.18
603 655 1.888512 ACCCTAACAGCAAATGCACAG 59.111 47.619 8.28 0.00 45.16 3.66
620 672 4.157246 ACCCAAATAAAACTGGAGAACCC 58.843 43.478 0.00 0.00 34.35 4.11
634 686 4.299586 TCTGTCATCAGCAACCCAAATA 57.700 40.909 0.00 0.00 41.10 1.40
635 687 3.159213 TCTGTCATCAGCAACCCAAAT 57.841 42.857 0.00 0.00 41.10 2.32
640 692 2.143122 TCGTTTCTGTCATCAGCAACC 58.857 47.619 5.51 0.00 42.02 3.77
680 732 1.596260 CCACGCACTCATCATGTCATC 59.404 52.381 0.00 0.00 0.00 2.92
699 751 6.947644 TTTTCCTTCCTAACACTTGTAACC 57.052 37.500 0.00 0.00 0.00 2.85
708 760 5.819991 AGCATCTCATTTTCCTTCCTAACA 58.180 37.500 0.00 0.00 0.00 2.41
750 802 4.445545 GACAAAAGCTCGCCGCCG 62.446 66.667 0.00 0.00 40.39 6.46
752 804 2.127232 GTGACAAAAGCTCGCCGC 60.127 61.111 0.00 0.00 39.57 6.53
753 805 0.238289 AATGTGACAAAAGCTCGCCG 59.762 50.000 0.00 0.00 0.00 6.46
754 806 1.266718 TCAATGTGACAAAAGCTCGCC 59.733 47.619 0.00 0.00 0.00 5.54
776 879 1.542187 AAGGGAAGGGAAGGTCGTCG 61.542 60.000 0.00 0.00 0.00 5.12
785 888 1.993301 GGAAAGGAAGAAGGGAAGGGA 59.007 52.381 0.00 0.00 0.00 4.20
786 889 1.996291 AGGAAAGGAAGAAGGGAAGGG 59.004 52.381 0.00 0.00 0.00 3.95
799 902 0.247736 CACTCCCTGACGAGGAAAGG 59.752 60.000 0.00 0.00 42.93 3.11
801 904 0.178944 TCCACTCCCTGACGAGGAAA 60.179 55.000 0.00 0.00 42.93 3.13
802 905 0.898789 GTCCACTCCCTGACGAGGAA 60.899 60.000 0.00 0.00 42.93 3.36
804 907 3.289525 GTCCACTCCCTGACGAGG 58.710 66.667 0.00 0.00 39.42 4.63
808 911 1.816863 TTCAGCGTCCACTCCCTGAC 61.817 60.000 0.00 0.00 34.36 3.51
809 912 0.904865 ATTCAGCGTCCACTCCCTGA 60.905 55.000 0.00 0.00 32.90 3.86
810 913 0.460987 GATTCAGCGTCCACTCCCTG 60.461 60.000 0.00 0.00 0.00 4.45
811 914 1.901085 GATTCAGCGTCCACTCCCT 59.099 57.895 0.00 0.00 0.00 4.20
813 916 0.103208 ATCGATTCAGCGTCCACTCC 59.897 55.000 0.00 0.00 0.00 3.85
814 917 1.203928 CATCGATTCAGCGTCCACTC 58.796 55.000 0.00 0.00 0.00 3.51
815 918 0.807667 GCATCGATTCAGCGTCCACT 60.808 55.000 0.00 0.00 0.00 4.00
820 923 2.987413 TTTTTGCATCGATTCAGCGT 57.013 40.000 0.00 0.00 0.00 5.07
843 946 1.600916 GTTCAGCGCCCACTCCTTT 60.601 57.895 2.29 0.00 0.00 3.11
846 949 2.731691 TTCAGTTCAGCGCCCACTCC 62.732 60.000 2.29 0.00 0.00 3.85
847 950 1.301716 TTCAGTTCAGCGCCCACTC 60.302 57.895 2.29 0.00 0.00 3.51
849 952 0.320421 TAGTTCAGTTCAGCGCCCAC 60.320 55.000 2.29 0.00 0.00 4.61
850 953 0.037326 CTAGTTCAGTTCAGCGCCCA 60.037 55.000 2.29 0.00 0.00 5.36
921 1278 7.502060 AAGATGAGATAACTTCCTTCCTTCA 57.498 36.000 0.00 0.00 0.00 3.02
973 1335 2.364961 CGAAGAGGGGAGGGAGGT 59.635 66.667 0.00 0.00 0.00 3.85
975 1337 3.157949 GCCGAAGAGGGGAGGGAG 61.158 72.222 0.00 0.00 41.48 4.30
1335 1699 1.760086 CTGCGTGATCTCCTCCCCT 60.760 63.158 0.00 0.00 0.00 4.79
1468 1832 9.881649 AGCCATCATTTATCATACAGTACATAG 57.118 33.333 0.00 0.00 0.00 2.23
1470 1834 7.609146 CCAGCCATCATTTATCATACAGTACAT 59.391 37.037 0.00 0.00 0.00 2.29
1472 1836 7.161404 TCCAGCCATCATTTATCATACAGTAC 58.839 38.462 0.00 0.00 0.00 2.73
1473 1837 7.315066 TCCAGCCATCATTTATCATACAGTA 57.685 36.000 0.00 0.00 0.00 2.74
1474 1838 6.191657 TCCAGCCATCATTTATCATACAGT 57.808 37.500 0.00 0.00 0.00 3.55
1475 1839 7.362660 CCAATCCAGCCATCATTTATCATACAG 60.363 40.741 0.00 0.00 0.00 2.74
1485 1854 1.968493 GCATCCAATCCAGCCATCATT 59.032 47.619 0.00 0.00 0.00 2.57
1532 1928 5.416013 GGGAAAAATCAACCAACCAAACAAA 59.584 36.000 0.00 0.00 0.00 2.83
1533 1929 4.944317 GGGAAAAATCAACCAACCAAACAA 59.056 37.500 0.00 0.00 0.00 2.83
1534 1930 4.019321 TGGGAAAAATCAACCAACCAAACA 60.019 37.500 0.00 0.00 0.00 2.83
1535 1931 4.518249 TGGGAAAAATCAACCAACCAAAC 58.482 39.130 0.00 0.00 0.00 2.93
1544 1940 6.890268 AGTATCCTAGGTTGGGAAAAATCAAC 59.110 38.462 9.08 0.00 41.61 3.18
1568 1964 8.420222 ACTGAATGAAGTGAGATTGGTATCTAG 58.580 37.037 0.00 0.00 41.23 2.43
1578 1974 5.006386 GGGACAAACTGAATGAAGTGAGAT 58.994 41.667 0.00 0.00 0.00 2.75
1634 2030 8.815565 TCTAGAGAGAGACATTCACAATAAGT 57.184 34.615 0.00 0.00 0.00 2.24
1638 2034 8.133024 ACTTTCTAGAGAGAGACATTCACAAT 57.867 34.615 16.76 0.00 31.77 2.71
1665 2065 2.783989 CACTTGAGTGGGAGGGAGACC 61.784 61.905 3.19 0.00 46.54 3.85
1826 2226 6.435591 AGTGAAGTGAGTGTGAATCATAGAGA 59.564 38.462 0.00 0.00 0.00 3.10
1829 2229 7.095910 AGAAGTGAAGTGAGTGTGAATCATAG 58.904 38.462 0.00 0.00 0.00 2.23
1843 2243 3.199880 ACAAGGTGGAGAAGTGAAGTG 57.800 47.619 0.00 0.00 0.00 3.16
1971 2371 3.193479 GGGCAAATAGTGAAGTGAAAGGG 59.807 47.826 0.00 0.00 0.00 3.95
2017 2418 1.128692 CATCGAACGAAAAGGGACAGC 59.871 52.381 0.12 0.00 0.00 4.40
2018 2419 1.732259 CCATCGAACGAAAAGGGACAG 59.268 52.381 0.12 0.00 0.00 3.51
2022 2423 1.094785 ATGCCATCGAACGAAAAGGG 58.905 50.000 0.12 2.69 0.00 3.95
2025 2426 3.687212 ACATGTATGCCATCGAACGAAAA 59.313 39.130 0.00 0.00 0.00 2.29
2028 2429 2.469826 GACATGTATGCCATCGAACGA 58.530 47.619 0.00 0.00 0.00 3.85
2030 2431 1.873591 GGGACATGTATGCCATCGAAC 59.126 52.381 0.00 0.00 0.00 3.95
2033 2434 3.704100 TGGGACATGTATGCCATCG 57.296 52.632 0.00 0.00 0.00 3.84
2064 2628 6.091441 GCACAAAACAGAGAGATTGGTACTAG 59.909 42.308 0.00 0.00 0.00 2.57
2068 2632 4.072131 GGCACAAAACAGAGAGATTGGTA 58.928 43.478 0.00 0.00 0.00 3.25
2106 2670 0.915364 GGCCTGAAGAACCTGGAGAT 59.085 55.000 0.00 0.00 0.00 2.75
2267 2831 5.237127 CAGAATGCCATCGCTGATAAAGTTA 59.763 40.000 2.32 0.00 35.36 2.24
2280 2844 8.798859 ACTATACCATTATTCAGAATGCCATC 57.201 34.615 5.85 0.00 35.79 3.51
2297 2861 5.007682 GGAGCAAACTTCCAAACTATACCA 58.992 41.667 0.00 0.00 0.00 3.25
2424 2989 5.276442 GCATAGCTAAGAAGAAAGTGCGTAC 60.276 44.000 0.00 0.00 0.00 3.67
2486 3051 7.111247 AGTCCAACAAAAATCAACATCTTGA 57.889 32.000 0.00 0.00 40.77 3.02
2496 3061 5.578776 ACAGAACGAAGTCCAACAAAAATC 58.421 37.500 0.00 0.00 45.00 2.17
2504 3069 5.223449 AGGATAAACAGAACGAAGTCCAA 57.777 39.130 0.00 0.00 45.00 3.53
2515 3080 7.093068 TGGACTGCATAGTAAAGGATAAACAGA 60.093 37.037 0.00 0.00 37.25 3.41
2543 3108 9.784680 CTCAGTGATCATTTCCAAAATTTCTAG 57.215 33.333 0.00 0.00 0.00 2.43
2546 3111 7.869429 ACACTCAGTGATCATTTCCAAAATTTC 59.131 33.333 13.14 0.00 36.96 2.17
2548 3113 7.294017 ACACTCAGTGATCATTTCCAAAATT 57.706 32.000 13.14 0.00 36.96 1.82
2551 3116 6.064060 AGAACACTCAGTGATCATTTCCAAA 58.936 36.000 13.14 0.00 37.72 3.28
2553 3118 5.233083 AGAACACTCAGTGATCATTTCCA 57.767 39.130 13.14 0.00 37.72 3.53
2560 3125 6.183360 CGTCATACAAAGAACACTCAGTGATC 60.183 42.308 13.14 9.75 36.96 2.92
2585 3150 7.872993 TGATATGTATTAGCTACCAAGTTCTGC 59.127 37.037 0.00 0.00 0.00 4.26
2657 3222 3.629142 AGAGGGTTAGATGAAAACGGG 57.371 47.619 0.00 0.00 0.00 5.28
2727 3292 9.332502 TGTGCTTAACTTTAAAATCAGTAGACA 57.667 29.630 0.00 0.00 0.00 3.41
2749 3314 5.362556 ACACAGAAACAACTATGATGTGC 57.637 39.130 0.00 0.00 40.05 4.57
2752 3317 5.761003 TGCAACACAGAAACAACTATGATG 58.239 37.500 0.00 0.00 0.00 3.07
2910 3475 3.194329 CCTGTACAGCTTCAGATGACAGA 59.806 47.826 17.86 0.00 39.53 3.41
2925 3490 4.225042 AGCACTTCAATGATACCCTGTACA 59.775 41.667 0.00 0.00 0.00 2.90
2934 3499 6.154192 ACTTGAGAGAGAGCACTTCAATGATA 59.846 38.462 0.00 0.00 0.00 2.15
3008 3573 4.941873 ACAGTACAGCCCAATAGTTTAAGC 59.058 41.667 0.00 0.00 0.00 3.09
3017 3582 2.781681 GTACCACAGTACAGCCCAAT 57.218 50.000 0.00 0.00 46.84 3.16
3122 3687 4.903045 TCTGGATAAAAGGGTCGACTTT 57.097 40.909 16.46 10.76 42.17 2.66
3369 3934 3.679389 AGAGAGTTCGGCATGAAACAAT 58.321 40.909 0.00 0.00 38.60 2.71
3552 4124 0.846870 AAGGAACCAGAGGAAGGGGG 60.847 60.000 0.00 0.00 0.00 5.40
3553 4125 1.076438 AAAGGAACCAGAGGAAGGGG 58.924 55.000 0.00 0.00 0.00 4.79
3554 4126 2.555448 GGAAAAGGAACCAGAGGAAGGG 60.555 54.545 0.00 0.00 0.00 3.95
3555 4127 2.555448 GGGAAAAGGAACCAGAGGAAGG 60.555 54.545 0.00 0.00 0.00 3.46
3556 4128 2.796557 GGGAAAAGGAACCAGAGGAAG 58.203 52.381 0.00 0.00 0.00 3.46
3557 4129 1.073284 CGGGAAAAGGAACCAGAGGAA 59.927 52.381 0.00 0.00 0.00 3.36
3558 4130 0.690762 CGGGAAAAGGAACCAGAGGA 59.309 55.000 0.00 0.00 0.00 3.71
3559 4131 0.400594 ACGGGAAAAGGAACCAGAGG 59.599 55.000 0.00 0.00 0.00 3.69
3588 4427 2.760634 TAATCTTCGACCAAGCAGCA 57.239 45.000 0.00 0.00 31.26 4.41
3698 4542 0.390124 CCAACCTTGTGCAATGCTGT 59.610 50.000 6.82 0.00 0.00 4.40
3863 4707 4.469586 AGGCAAAAGACCCTTTTCTTTCAA 59.530 37.500 2.05 0.00 43.62 2.69
4258 5103 5.350504 ACCTTCAAATCGATCAGATCAGT 57.649 39.130 11.12 0.00 38.98 3.41
4296 5148 6.652481 ACCTACAGTGTTGAAGATGATCAAAG 59.348 38.462 0.00 0.00 40.76 2.77
4297 5149 6.533730 ACCTACAGTGTTGAAGATGATCAAA 58.466 36.000 0.00 0.00 40.76 2.69
4298 5150 6.114187 ACCTACAGTGTTGAAGATGATCAA 57.886 37.500 0.00 0.00 36.99 2.57
4319 5171 3.440228 ACACAACGTGTATTGCAAAACC 58.560 40.909 1.71 0.00 45.56 3.27
4472 5348 4.606457 AATAATCGCTTCAGAACAGCAC 57.394 40.909 0.00 0.00 37.07 4.40
4552 5433 2.178580 CCAGCTTAATTTCCAGGGCAA 58.821 47.619 0.00 0.00 0.00 4.52
4557 5438 8.950210 CCATACATATACCAGCTTAATTTCCAG 58.050 37.037 0.00 0.00 0.00 3.86
4583 5479 1.359459 GCAGGACCGACCGAACAATC 61.359 60.000 0.00 0.00 44.74 2.67
4594 5490 0.102120 TTTGCTGTTTTGCAGGACCG 59.898 50.000 0.00 0.00 45.34 4.79
4602 5498 4.797471 TGCATACTAGCTTTGCTGTTTTG 58.203 39.130 11.87 2.80 40.10 2.44
4609 5505 3.425577 TGCATTGCATACTAGCTTTGC 57.574 42.857 7.38 0.00 40.79 3.68
4640 5543 7.179269 CCTCTCCCTAGTGAATAAGCTACTAT 58.821 42.308 0.00 0.00 0.00 2.12
4641 5544 6.544650 CCTCTCCCTAGTGAATAAGCTACTA 58.455 44.000 0.00 0.00 0.00 1.82
4642 5545 5.390387 CCTCTCCCTAGTGAATAAGCTACT 58.610 45.833 0.00 0.00 0.00 2.57
4643 5546 4.021807 GCCTCTCCCTAGTGAATAAGCTAC 60.022 50.000 0.00 0.00 0.00 3.58
4653 5556 3.541713 GGCCGCCTCTCCCTAGTG 61.542 72.222 0.71 0.00 0.00 2.74
4671 5574 4.158949 ACAAATTAAAATCCCGTACCTGCC 59.841 41.667 0.00 0.00 0.00 4.85
4688 5591 9.612066 AATGAAGTGATACCAACAAAACAAATT 57.388 25.926 0.00 0.00 0.00 1.82
4689 5592 9.044150 CAATGAAGTGATACCAACAAAACAAAT 57.956 29.630 0.00 0.00 0.00 2.32
4703 5610 2.115427 TCGGCTCCCAATGAAGTGATA 58.885 47.619 0.00 0.00 0.00 2.15
4704 5611 0.911769 TCGGCTCCCAATGAAGTGAT 59.088 50.000 0.00 0.00 0.00 3.06
4799 5706 2.324332 CTGCGCCGTCTACGACATCT 62.324 60.000 4.18 0.00 43.02 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.