Multiple sequence alignment - TraesCS2A01G530600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G530600 chr2A 100.000 4298 0 0 1 4298 748284150 748288447 0.000000e+00 7938.0
1 TraesCS2A01G530600 chr2A 92.258 2493 175 4 867 3346 746620254 746622741 0.000000e+00 3518.0
2 TraesCS2A01G530600 chr2A 92.583 2373 170 6 1046 3413 748437604 748439975 0.000000e+00 3402.0
3 TraesCS2A01G530600 chr2A 87.689 2583 278 21 824 3368 748503794 748501214 0.000000e+00 2972.0
4 TraesCS2A01G530600 chr2A 91.033 1829 135 6 867 2681 748458671 748456858 0.000000e+00 2442.0
5 TraesCS2A01G530600 chr2A 84.185 1252 125 25 589 1780 748389465 748390703 0.000000e+00 1147.0
6 TraesCS2A01G530600 chr2A 85.714 175 19 6 3638 3809 748464435 748464264 3.410000e-41 180.0
7 TraesCS2A01G530600 chr2A 89.474 95 8 2 691 784 746620168 746620261 7.550000e-23 119.0
8 TraesCS2A01G530600 chr2A 87.209 86 10 1 700 784 748458749 748458664 3.540000e-16 97.1
9 TraesCS2A01G530600 chr2A 88.312 77 7 2 4181 4257 748452097 748452023 1.650000e-14 91.6
10 TraesCS2A01G530600 chr2D 90.101 2879 219 22 587 3413 617546009 617548873 0.000000e+00 3677.0
11 TraesCS2A01G530600 chr2D 90.046 2632 227 18 976 3584 617909820 617907201 0.000000e+00 3376.0
12 TraesCS2A01G530600 chr2D 89.756 2577 208 31 819 3346 617538622 617541191 0.000000e+00 3245.0
13 TraesCS2A01G530600 chr2D 92.050 2302 180 3 1046 3346 617633890 617636189 0.000000e+00 3234.0
14 TraesCS2A01G530600 chr2D 91.016 2371 209 4 1046 3413 617887358 617889727 0.000000e+00 3195.0
15 TraesCS2A01G530600 chr2D 83.401 494 56 16 4 472 617545375 617545867 6.600000e-118 435.0
16 TraesCS2A01G530600 chr2D 83.436 326 40 13 3637 3956 617762703 617763020 1.510000e-74 291.0
17 TraesCS2A01G530600 chr2D 88.344 163 10 1 3638 3791 617413537 617413375 2.040000e-43 187.0
18 TraesCS2A01G530600 chr2D 80.000 275 34 9 3638 3898 617907047 617906780 2.640000e-42 183.0
19 TraesCS2A01G530600 chr2B 92.758 2444 147 4 931 3346 753792720 753795161 0.000000e+00 3506.0
20 TraesCS2A01G530600 chr2B 89.915 2697 216 11 685 3346 753931627 753928952 0.000000e+00 3422.0
21 TraesCS2A01G530600 chr2B 82.067 329 32 11 3638 3958 753629565 753629256 5.520000e-64 255.0
22 TraesCS2A01G530600 chr2B 79.751 321 34 22 3651 3958 753795417 753795719 2.030000e-48 204.0
23 TraesCS2A01G530600 chr2B 83.732 209 21 5 594 791 753792519 753792725 7.340000e-43 185.0
24 TraesCS2A01G530600 chr7B 88.938 2260 174 19 699 2911 726149990 726152220 0.000000e+00 2719.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G530600 chr2A 748284150 748288447 4297 False 7938.000000 7938 100.000000 1 4298 1 chr2A.!!$F1 4297
1 TraesCS2A01G530600 chr2A 748437604 748439975 2371 False 3402.000000 3402 92.583000 1046 3413 1 chr2A.!!$F3 2367
2 TraesCS2A01G530600 chr2A 748501214 748503794 2580 True 2972.000000 2972 87.689000 824 3368 1 chr2A.!!$R3 2544
3 TraesCS2A01G530600 chr2A 746620168 746622741 2573 False 1818.500000 3518 90.866000 691 3346 2 chr2A.!!$F4 2655
4 TraesCS2A01G530600 chr2A 748456858 748458749 1891 True 1269.550000 2442 89.121000 700 2681 2 chr2A.!!$R4 1981
5 TraesCS2A01G530600 chr2A 748389465 748390703 1238 False 1147.000000 1147 84.185000 589 1780 1 chr2A.!!$F2 1191
6 TraesCS2A01G530600 chr2D 617538622 617541191 2569 False 3245.000000 3245 89.756000 819 3346 1 chr2D.!!$F1 2527
7 TraesCS2A01G530600 chr2D 617633890 617636189 2299 False 3234.000000 3234 92.050000 1046 3346 1 chr2D.!!$F2 2300
8 TraesCS2A01G530600 chr2D 617887358 617889727 2369 False 3195.000000 3195 91.016000 1046 3413 1 chr2D.!!$F4 2367
9 TraesCS2A01G530600 chr2D 617545375 617548873 3498 False 2056.000000 3677 86.751000 4 3413 2 chr2D.!!$F5 3409
10 TraesCS2A01G530600 chr2D 617906780 617909820 3040 True 1779.500000 3376 85.023000 976 3898 2 chr2D.!!$R2 2922
11 TraesCS2A01G530600 chr2B 753928952 753931627 2675 True 3422.000000 3422 89.915000 685 3346 1 chr2B.!!$R2 2661
12 TraesCS2A01G530600 chr2B 753792519 753795719 3200 False 1298.333333 3506 85.413667 594 3958 3 chr2B.!!$F1 3364
13 TraesCS2A01G530600 chr7B 726149990 726152220 2230 False 2719.000000 2719 88.938000 699 2911 1 chr7B.!!$F1 2212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 618 0.036875 AAAGGGACCAAAGCGGAGAG 59.963 55.0 0.00 0.0 38.63 3.20 F
683 752 0.110678 TCCGTCGGGCTATCTCTCAT 59.889 55.0 12.29 0.0 0.00 2.90 F
2205 2402 0.182061 GGATGGATGCTGCTCTGGAA 59.818 55.0 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 2573 2.727123 TTCCTTCTTTGCACAGGTCA 57.273 45.0 0.00 0.0 0.00 4.02 R
2633 2843 0.036010 CCCGCTGAGTGACATTTCCT 60.036 55.0 0.00 0.0 0.00 3.36 R
3995 4343 0.593263 GCACATAGCGCAGGCAATTC 60.593 55.0 11.47 0.0 43.41 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.438975 CATCCGCACACCCATGCT 60.439 61.111 0.00 0.00 43.80 3.79
115 116 3.966104 CCTAGATCTGCGCGGCGA 61.966 66.667 28.54 10.41 0.00 5.54
147 148 0.545071 TCACCCCTGTCAGATCTGCA 60.545 55.000 18.36 16.86 0.00 4.41
154 155 1.520342 GTCAGATCTGCACGCTCCC 60.520 63.158 18.36 0.00 0.00 4.30
155 156 1.683707 TCAGATCTGCACGCTCCCT 60.684 57.895 18.36 0.00 0.00 4.20
156 157 1.227205 CAGATCTGCACGCTCCCTC 60.227 63.158 10.38 0.00 0.00 4.30
158 159 3.781770 GATCTGCACGCTCCCTCCG 62.782 68.421 0.00 0.00 0.00 4.63
165 166 4.394712 CGCTCCCTCCGTGCCTTT 62.395 66.667 0.00 0.00 0.00 3.11
166 167 2.747855 GCTCCCTCCGTGCCTTTG 60.748 66.667 0.00 0.00 0.00 2.77
167 168 2.747855 CTCCCTCCGTGCCTTTGC 60.748 66.667 0.00 0.00 38.26 3.68
182 194 3.974835 TTGCCGGATCTGCACGCAT 62.975 57.895 5.05 0.00 38.72 4.73
197 209 2.823593 CATGGATGCCGCCGTCAA 60.824 61.111 0.00 0.00 0.00 3.18
199 211 3.620419 ATGGATGCCGCCGTCAACA 62.620 57.895 0.00 0.00 0.00 3.33
278 290 1.313129 GAGAGGGAGAGAAGGGCCT 59.687 63.158 0.00 0.00 0.00 5.19
347 359 3.162154 GCGAGGGGAAGGGGTAGG 61.162 72.222 0.00 0.00 0.00 3.18
354 366 1.540617 GGAAGGGGTAGGGTGGTGT 60.541 63.158 0.00 0.00 0.00 4.16
358 384 3.633116 GGGTAGGGTGGTGTGCGT 61.633 66.667 0.00 0.00 0.00 5.24
370 396 0.741221 GTGTGCGTCCAGATTCTCCC 60.741 60.000 0.00 0.00 0.00 4.30
379 405 4.176752 GATTCTCCCGGGCCGCTT 62.177 66.667 23.20 0.00 0.00 4.68
404 430 1.480954 GGAGCGATGAAGAGGGTGTAA 59.519 52.381 0.00 0.00 0.00 2.41
411 437 5.116180 CGATGAAGAGGGTGTAAATAGCAA 58.884 41.667 0.00 0.00 0.00 3.91
435 461 6.118170 ACATAGTTTGAATAGTGCAGCTCAT 58.882 36.000 0.00 0.00 0.00 2.90
438 464 4.874966 AGTTTGAATAGTGCAGCTCATCTC 59.125 41.667 0.00 0.00 0.00 2.75
442 468 2.904697 TAGTGCAGCTCATCTCATGG 57.095 50.000 0.00 0.00 0.00 3.66
446 472 0.107312 GCAGCTCATCTCATGGGTGT 60.107 55.000 0.00 0.00 34.03 4.16
447 473 1.664873 CAGCTCATCTCATGGGTGTG 58.335 55.000 0.00 0.00 31.83 3.82
452 478 0.465097 CATCTCATGGGTGTGAGGCC 60.465 60.000 0.00 0.00 44.51 5.19
455 481 2.747460 CATGGGTGTGAGGCCGTG 60.747 66.667 0.00 0.00 0.00 4.94
460 486 2.280797 GTGTGAGGCCGTGAGCAA 60.281 61.111 0.00 0.00 46.50 3.91
466 492 3.134127 GGCCGTGAGCAACCATCC 61.134 66.667 0.00 0.00 46.50 3.51
472 498 0.737219 GTGAGCAACCATCCAGCATC 59.263 55.000 0.00 0.00 0.00 3.91
474 500 1.064240 TGAGCAACCATCCAGCATCAT 60.064 47.619 0.00 0.00 0.00 2.45
475 501 2.029623 GAGCAACCATCCAGCATCATT 58.970 47.619 0.00 0.00 0.00 2.57
476 502 2.029623 AGCAACCATCCAGCATCATTC 58.970 47.619 0.00 0.00 0.00 2.67
477 503 1.268896 GCAACCATCCAGCATCATTCG 60.269 52.381 0.00 0.00 0.00 3.34
478 504 1.027357 AACCATCCAGCATCATTCGC 58.973 50.000 0.00 0.00 0.00 4.70
479 505 0.107066 ACCATCCAGCATCATTCGCA 60.107 50.000 0.00 0.00 0.00 5.10
480 506 1.026584 CCATCCAGCATCATTCGCAA 58.973 50.000 0.00 0.00 0.00 4.85
481 507 1.406180 CCATCCAGCATCATTCGCAAA 59.594 47.619 0.00 0.00 0.00 3.68
482 508 2.543031 CCATCCAGCATCATTCGCAAAG 60.543 50.000 0.00 0.00 0.00 2.77
483 509 2.112380 TCCAGCATCATTCGCAAAGA 57.888 45.000 0.00 0.00 0.00 2.52
484 510 1.739466 TCCAGCATCATTCGCAAAGAC 59.261 47.619 0.00 0.00 0.00 3.01
485 511 1.741706 CCAGCATCATTCGCAAAGACT 59.258 47.619 0.00 0.00 0.00 3.24
490 516 3.125829 GCATCATTCGCAAAGACTCAGAA 59.874 43.478 0.00 0.00 0.00 3.02
491 517 4.378770 GCATCATTCGCAAAGACTCAGAAA 60.379 41.667 0.00 0.00 0.00 2.52
492 518 5.692814 CATCATTCGCAAAGACTCAGAAAA 58.307 37.500 0.00 0.00 0.00 2.29
494 520 7.466805 CATCATTCGCAAAGACTCAGAAAATA 58.533 34.615 0.00 0.00 0.00 1.40
495 521 7.433708 TCATTCGCAAAGACTCAGAAAATAA 57.566 32.000 0.00 0.00 0.00 1.40
496 522 8.044060 TCATTCGCAAAGACTCAGAAAATAAT 57.956 30.769 0.00 0.00 0.00 1.28
509 535 9.520204 ACTCAGAAAATAATAAATTTGCGATGG 57.480 29.630 0.00 0.00 0.00 3.51
510 536 9.734620 CTCAGAAAATAATAAATTTGCGATGGA 57.265 29.630 0.00 0.00 0.00 3.41
522 548 8.776376 AAATTTGCGATGGAATAAAAATCTGT 57.224 26.923 0.00 0.00 0.00 3.41
523 549 7.760131 ATTTGCGATGGAATAAAAATCTGTG 57.240 32.000 0.00 0.00 0.00 3.66
524 550 6.507958 TTGCGATGGAATAAAAATCTGTGA 57.492 33.333 0.00 0.00 0.00 3.58
525 551 5.879237 TGCGATGGAATAAAAATCTGTGAC 58.121 37.500 0.00 0.00 0.00 3.67
526 552 4.963953 GCGATGGAATAAAAATCTGTGACG 59.036 41.667 0.00 0.00 0.00 4.35
527 553 5.501715 CGATGGAATAAAAATCTGTGACGG 58.498 41.667 0.00 0.00 0.00 4.79
528 554 5.293324 CGATGGAATAAAAATCTGTGACGGA 59.707 40.000 0.00 0.00 0.00 4.69
529 555 6.183360 CGATGGAATAAAAATCTGTGACGGAA 60.183 38.462 0.00 0.00 0.00 4.30
530 556 7.467267 CGATGGAATAAAAATCTGTGACGGAAT 60.467 37.037 0.00 0.00 0.00 3.01
532 558 6.657117 TGGAATAAAAATCTGTGACGGAATCA 59.343 34.615 0.00 0.00 33.79 2.57
560 586 1.682854 TGTGCTTGAAAAAGGGAGCAG 59.317 47.619 0.00 0.00 32.71 4.24
561 587 1.956477 GTGCTTGAAAAAGGGAGCAGA 59.044 47.619 0.00 0.00 32.71 4.26
562 588 2.030451 GTGCTTGAAAAAGGGAGCAGAG 60.030 50.000 0.00 0.00 32.71 3.35
565 591 3.189495 GCTTGAAAAAGGGAGCAGAGTAC 59.811 47.826 0.00 0.00 0.00 2.73
566 592 3.418684 TGAAAAAGGGAGCAGAGTACC 57.581 47.619 0.00 0.00 0.00 3.34
567 593 2.039879 TGAAAAAGGGAGCAGAGTACCC 59.960 50.000 0.00 0.00 43.55 3.69
589 615 3.524346 AAAAAGGGACCAAAGCGGA 57.476 47.368 0.00 0.00 38.63 5.54
590 616 1.328279 AAAAAGGGACCAAAGCGGAG 58.672 50.000 0.00 0.00 38.63 4.63
591 617 0.476771 AAAAGGGACCAAAGCGGAGA 59.523 50.000 0.00 0.00 38.63 3.71
592 618 0.036875 AAAGGGACCAAAGCGGAGAG 59.963 55.000 0.00 0.00 38.63 3.20
593 619 0.836400 AAGGGACCAAAGCGGAGAGA 60.836 55.000 0.00 0.00 38.63 3.10
599 654 3.561725 GGACCAAAGCGGAGAGATAAATG 59.438 47.826 0.00 0.00 38.63 2.32
626 681 4.011517 CGTTGTACCGCCCACCCT 62.012 66.667 0.00 0.00 0.00 4.34
637 692 1.540367 CCCACCCTACACCCCAAGA 60.540 63.158 0.00 0.00 0.00 3.02
683 752 0.110678 TCCGTCGGGCTATCTCTCAT 59.889 55.000 12.29 0.00 0.00 2.90
764 834 3.991924 ATCGGTCCTGCCTCCTGCT 62.992 63.158 0.00 0.00 42.00 4.24
767 837 1.899437 CGGTCCTGCCTCCTGCTTTA 61.899 60.000 0.00 0.00 42.00 1.85
774 844 0.744771 GCCTCCTGCTTTACCTTCCG 60.745 60.000 0.00 0.00 36.87 4.30
923 1040 2.874780 GTCGCACCGACGCTACTG 60.875 66.667 1.79 0.00 46.56 2.74
981 1141 1.254284 CCAGAGGGTGAGTCGAGCTT 61.254 60.000 0.00 0.00 0.00 3.74
1503 1700 2.425592 CCCGAACTGGACTGTGCA 59.574 61.111 1.10 1.10 42.00 4.57
1833 2030 5.493133 GTGTTCTACCAAATGTTGTCACA 57.507 39.130 0.00 0.00 37.31 3.58
1885 2082 3.625313 GCATAGAAGGACAAAGGAAGCTC 59.375 47.826 0.00 0.00 0.00 4.09
1917 2114 1.304713 CTCCATGGCTGCAAAGGGT 60.305 57.895 6.96 0.00 0.00 4.34
1962 2159 7.175641 TCCTACTCTATTATGCTTAACGGGTAC 59.824 40.741 0.00 0.00 0.00 3.34
1996 2193 6.219473 GGATACTTCGATGACATGACTGATT 58.781 40.000 0.00 0.00 0.00 2.57
1998 2195 5.791367 ACTTCGATGACATGACTGATTTG 57.209 39.130 0.00 0.00 0.00 2.32
2205 2402 0.182061 GGATGGATGCTGCTCTGGAA 59.818 55.000 0.00 0.00 0.00 3.53
2239 2436 5.123502 CAGATGGTCAATCAAGGAGTTTCAG 59.876 44.000 0.00 0.00 37.81 3.02
2301 2498 6.075762 TGTTCTCATGGTGATTTTGTGAAG 57.924 37.500 0.00 0.00 0.00 3.02
2325 2522 4.752146 CCAAGGAATTGATTTCTGAAGCC 58.248 43.478 0.00 0.00 34.56 4.35
2365 2562 7.985184 TGTGTTCTAACAGTGTGTTCTTCTATT 59.015 33.333 0.00 0.00 40.22 1.73
2422 2631 3.567478 AGGAGGCACAGGATATGTTTC 57.433 47.619 0.00 0.00 41.41 2.78
2633 2843 3.440173 GCCGATGGATTGAGTCTTTTCAA 59.560 43.478 0.00 0.00 41.00 2.69
2838 3048 3.679917 GCACTGGTGAAGCAATAGAGCTA 60.680 47.826 4.79 0.00 45.89 3.32
2988 3198 0.254462 TGGTGCCTTCTGTTGTGACA 59.746 50.000 0.00 0.00 0.00 3.58
2994 3204 2.160417 GCCTTCTGTTGTGACATACAGC 59.840 50.000 17.29 7.90 41.16 4.40
3009 3219 7.693951 GTGACATACAGCTTAATGATGACAAAC 59.306 37.037 11.19 0.00 35.75 2.93
3058 3268 6.485984 AGAGGCTGATGATATGTTTTTAGCAG 59.514 38.462 0.00 0.00 0.00 4.24
3071 3281 4.634012 TTTTAGCAGTGGAGAAGGCTAA 57.366 40.909 0.00 0.00 44.49 3.09
3102 3312 3.285484 CAACTCCAGGCTGCTAAATCAT 58.715 45.455 9.56 0.00 0.00 2.45
3143 3353 4.368315 GAAAAAGGTGCAGTTGTAAAGGG 58.632 43.478 0.00 0.00 0.00 3.95
3149 3359 2.103373 TGCAGTTGTAAAGGGTGCAAA 58.897 42.857 0.00 0.00 41.05 3.68
3156 3366 6.808212 CAGTTGTAAAGGGTGCAAATTATCTG 59.192 38.462 0.00 0.00 33.24 2.90
3178 3388 4.340666 TGGCTAAACTTGATGCAAAACAGA 59.659 37.500 0.00 0.00 0.00 3.41
3189 3399 5.242171 TGATGCAAAACAGATGTCACTTGAT 59.758 36.000 0.00 0.00 0.00 2.57
3240 3450 3.010584 TCTTCTCAGGGGAAGGGAAATTG 59.989 47.826 8.94 0.00 41.94 2.32
3287 3498 2.327325 AAGTACCAGCCTCCTGAGAA 57.673 50.000 0.00 0.00 41.77 2.87
3291 3502 0.915364 ACCAGCCTCCTGAGAATTCC 59.085 55.000 0.65 0.00 41.77 3.01
3296 3507 1.414158 CCTCCTGAGAATTCCGGCTA 58.586 55.000 0.65 0.00 0.00 3.93
3355 3567 5.964958 AAACAAGGTGGTATTCACTCATG 57.035 39.130 0.00 0.00 45.38 3.07
3389 3603 1.809939 ATTGCCCCCACCTGCCTTTA 61.810 55.000 0.00 0.00 0.00 1.85
3416 3632 7.296856 TGGAAATGCAGATAATTCATCCCTTA 58.703 34.615 0.00 0.00 33.75 2.69
3449 3665 9.044150 CAGTATTCATCCATTTTGTTGTTGTTT 57.956 29.630 0.00 0.00 0.00 2.83
3450 3666 9.612066 AGTATTCATCCATTTTGTTGTTGTTTT 57.388 25.926 0.00 0.00 0.00 2.43
3457 3673 7.930217 TCCATTTTGTTGTTGTTTTTGTTTGA 58.070 26.923 0.00 0.00 0.00 2.69
3471 3687 7.980662 TGTTTTTGTTTGATGATGTCATGTTCT 59.019 29.630 0.00 0.00 36.54 3.01
3472 3688 9.462174 GTTTTTGTTTGATGATGTCATGTTCTA 57.538 29.630 0.00 0.00 36.54 2.10
3525 3741 2.196742 AGCCCTGAGGGTCATATGAA 57.803 50.000 20.64 0.00 46.51 2.57
3527 3743 2.374504 AGCCCTGAGGGTCATATGAATG 59.625 50.000 20.64 0.00 46.51 2.67
3553 3769 3.321682 CCCTTTTTGTGATGAAGAAGGCA 59.678 43.478 0.00 0.00 33.89 4.75
3561 3777 5.809001 TGTGATGAAGAAGGCATAACTCTT 58.191 37.500 0.00 0.00 29.99 2.85
3563 3779 7.394016 TGTGATGAAGAAGGCATAACTCTTAA 58.606 34.615 0.00 0.00 29.99 1.85
3576 3792 6.582672 GCATAACTCTTAACTGGAAAGTTTGC 59.417 38.462 0.00 0.00 32.71 3.68
3602 3819 6.566197 TGTGTCACACATTACATATTTGCA 57.434 33.333 6.50 0.00 39.62 4.08
3603 3820 7.155655 TGTGTCACACATTACATATTTGCAT 57.844 32.000 6.50 0.00 39.62 3.96
3604 3821 7.600960 TGTGTCACACATTACATATTTGCATT 58.399 30.769 6.50 0.00 39.62 3.56
3605 3822 8.087136 TGTGTCACACATTACATATTTGCATTT 58.913 29.630 6.50 0.00 39.62 2.32
3606 3823 9.566530 GTGTCACACATTACATATTTGCATTTA 57.433 29.630 2.00 0.00 34.08 1.40
3607 3824 9.566530 TGTCACACATTACATATTTGCATTTAC 57.433 29.630 0.00 0.00 0.00 2.01
3608 3825 8.733128 GTCACACATTACATATTTGCATTTACG 58.267 33.333 0.00 0.00 0.00 3.18
3609 3826 7.430793 TCACACATTACATATTTGCATTTACGC 59.569 33.333 0.00 0.00 0.00 4.42
3610 3827 7.219726 CACACATTACATATTTGCATTTACGCA 59.780 33.333 0.00 0.00 41.03 5.24
3611 3828 7.920151 ACACATTACATATTTGCATTTACGCAT 59.080 29.630 0.00 0.00 42.62 4.73
3612 3829 8.754096 CACATTACATATTTGCATTTACGCATT 58.246 29.630 0.00 0.00 42.62 3.56
3613 3830 9.311916 ACATTACATATTTGCATTTACGCATTT 57.688 25.926 0.00 0.00 42.62 2.32
3631 3913 6.035843 CGCATTTATTATGCAACAAGAAGGT 58.964 36.000 10.03 0.00 44.75 3.50
3636 3918 7.517614 TTATTATGCAACAAGAAGGTGTGAA 57.482 32.000 0.00 0.00 37.23 3.18
3660 3982 9.774742 GAATGTTTAATAACTGTGAGATGGTTC 57.225 33.333 0.00 0.00 35.24 3.62
3668 3990 3.261643 ACTGTGAGATGGTTCATGCACTA 59.738 43.478 0.00 0.00 31.44 2.74
3684 4006 5.213891 TGCACTATGTTTTCTCTCTGTCA 57.786 39.130 0.00 0.00 0.00 3.58
3744 4079 8.690884 TCAACTAACCTATGATCTCTTCTTCAG 58.309 37.037 0.00 0.00 0.00 3.02
3772 4107 7.224297 TGTTACAGAAAACTAGGATTGCTCTT 58.776 34.615 0.00 0.00 0.00 2.85
3773 4108 8.372459 TGTTACAGAAAACTAGGATTGCTCTTA 58.628 33.333 0.00 0.00 0.00 2.10
3792 4127 7.116662 TGCTCTTAGTTAAATGCTTGCATTTTG 59.883 33.333 30.14 16.97 36.35 2.44
3801 4137 9.890352 TTAAATGCTTGCATTTTGGAAATTTAC 57.110 25.926 30.14 0.00 36.35 2.01
3802 4138 7.507733 AATGCTTGCATTTTGGAAATTTACA 57.492 28.000 14.27 0.00 0.00 2.41
3803 4139 6.542574 TGCTTGCATTTTGGAAATTTACAG 57.457 33.333 2.74 0.00 0.00 2.74
3804 4140 5.469421 TGCTTGCATTTTGGAAATTTACAGG 59.531 36.000 2.74 0.00 0.00 4.00
3805 4141 5.469760 GCTTGCATTTTGGAAATTTACAGGT 59.530 36.000 2.74 0.00 0.00 4.00
3806 4142 6.017192 GCTTGCATTTTGGAAATTTACAGGTT 60.017 34.615 2.74 0.00 0.00 3.50
3810 4146 7.655328 TGCATTTTGGAAATTTACAGGTTACAG 59.345 33.333 2.74 0.00 0.00 2.74
3819 4155 1.993956 ACAGGTTACAGCCATTGCAA 58.006 45.000 0.00 0.00 41.13 4.08
3826 4162 4.563374 GGTTACAGCCATTGCAAGGAAAAT 60.563 41.667 13.66 0.00 41.13 1.82
3836 4172 6.858993 CCATTGCAAGGAAAATCAATTTGTTG 59.141 34.615 13.66 0.00 0.00 3.33
3837 4173 5.421212 TGCAAGGAAAATCAATTTGTTGC 57.579 34.783 16.19 16.19 39.59 4.17
3841 4177 6.515365 GCAAGGAAAATCAATTTGTTGCCAAT 60.515 34.615 13.97 0.00 36.64 3.16
3842 4178 6.563222 AGGAAAATCAATTTGTTGCCAATG 57.437 33.333 0.00 0.00 0.00 2.82
3843 4179 6.297582 AGGAAAATCAATTTGTTGCCAATGA 58.702 32.000 0.00 0.00 0.00 2.57
3845 4181 7.284944 AGGAAAATCAATTTGTTGCCAATGAAA 59.715 29.630 0.00 0.00 0.00 2.69
3846 4182 8.083462 GGAAAATCAATTTGTTGCCAATGAAAT 58.917 29.630 0.00 0.00 0.00 2.17
3847 4183 9.120422 GAAAATCAATTTGTTGCCAATGAAATC 57.880 29.630 0.00 0.00 0.00 2.17
3855 4192 4.220382 TGTTGCCAATGAAATCCTGGTTAG 59.780 41.667 0.00 0.00 32.46 2.34
3865 4202 7.739498 TGAAATCCTGGTTAGTTTCAGTAAC 57.261 36.000 11.96 0.00 36.11 2.50
3877 4214 4.021016 AGTTTCAGTAACGCCTCTCTCAAT 60.021 41.667 0.00 0.00 41.78 2.57
3893 4230 9.606631 CCTCTCTCAATAGTAGTGCTAATTTTT 57.393 33.333 0.00 0.00 32.72 1.94
3903 4240 7.996385 AGTAGTGCTAATTTTTGTTGAAGTGT 58.004 30.769 0.00 0.00 0.00 3.55
3905 4242 9.724839 GTAGTGCTAATTTTTGTTGAAGTGTAA 57.275 29.630 0.00 0.00 0.00 2.41
3927 4275 9.344772 TGTAATTATATTTTATTCACGGGCTGT 57.655 29.630 0.00 0.00 0.00 4.40
3930 4278 7.972832 TTATATTTTATTCACGGGCTGTAGG 57.027 36.000 0.00 0.00 0.00 3.18
3932 4280 1.200519 TTATTCACGGGCTGTAGGCT 58.799 50.000 0.00 0.00 41.46 4.58
3941 4289 0.955919 GGCTGTAGGCTGGTGAACAC 60.956 60.000 0.00 0.00 41.46 3.32
3942 4290 0.250295 GCTGTAGGCTGGTGAACACA 60.250 55.000 0.00 0.00 38.06 3.72
3943 4291 1.813862 GCTGTAGGCTGGTGAACACAA 60.814 52.381 0.00 0.00 38.06 3.33
3944 4292 2.783135 CTGTAGGCTGGTGAACACAAT 58.217 47.619 0.00 0.00 0.00 2.71
3945 4293 3.149196 CTGTAGGCTGGTGAACACAATT 58.851 45.455 0.00 0.00 0.00 2.32
3946 4294 2.884012 TGTAGGCTGGTGAACACAATTG 59.116 45.455 3.24 3.24 0.00 2.32
3947 4295 2.363306 AGGCTGGTGAACACAATTGA 57.637 45.000 13.59 0.00 0.00 2.57
3948 4296 2.665165 AGGCTGGTGAACACAATTGAA 58.335 42.857 13.59 0.00 0.00 2.69
3949 4297 2.362077 AGGCTGGTGAACACAATTGAAC 59.638 45.455 13.59 2.33 0.00 3.18
3950 4298 2.545742 GGCTGGTGAACACAATTGAACC 60.546 50.000 13.59 11.36 0.00 3.62
3951 4299 2.858260 GCTGGTGAACACAATTGAACCG 60.858 50.000 13.59 8.71 31.09 4.44
3952 4300 2.357637 CTGGTGAACACAATTGAACCGT 59.642 45.455 13.59 0.63 31.09 4.83
3953 4301 2.098280 TGGTGAACACAATTGAACCGTG 59.902 45.455 13.59 1.64 36.70 4.94
3954 4302 2.098443 GGTGAACACAATTGAACCGTGT 59.902 45.455 13.59 2.35 45.48 4.49
3959 4307 4.712122 ACACAATTGAACCGTGTTCTTT 57.288 36.364 13.59 8.22 40.91 2.52
3960 4308 5.066968 ACACAATTGAACCGTGTTCTTTT 57.933 34.783 13.59 7.96 40.91 2.27
3961 4309 6.197364 ACACAATTGAACCGTGTTCTTTTA 57.803 33.333 13.59 2.87 40.91 1.52
3962 4310 6.031471 ACACAATTGAACCGTGTTCTTTTAC 58.969 36.000 13.59 0.00 40.91 2.01
3963 4311 6.030849 CACAATTGAACCGTGTTCTTTTACA 58.969 36.000 13.59 0.00 0.00 2.41
3964 4312 6.020995 CACAATTGAACCGTGTTCTTTTACAC 60.021 38.462 13.59 0.00 43.86 2.90
3965 4313 5.821516 ATTGAACCGTGTTCTTTTACACA 57.178 34.783 14.95 0.00 46.85 3.72
3966 4314 5.624344 TTGAACCGTGTTCTTTTACACAA 57.376 34.783 14.95 0.00 46.85 3.33
3967 4315 5.821516 TGAACCGTGTTCTTTTACACAAT 57.178 34.783 14.95 0.00 46.85 2.71
3968 4316 6.922247 TGAACCGTGTTCTTTTACACAATA 57.078 33.333 14.95 0.00 46.85 1.90
3974 4322 8.407064 ACCGTGTTCTTTTACACAATAATTGAA 58.593 29.630 7.56 0.00 46.85 2.69
3987 4335 8.665175 CACAATAATTGAACTGTGTTCTCATC 57.335 34.615 11.06 0.00 35.52 2.92
3988 4336 8.509690 CACAATAATTGAACTGTGTTCTCATCT 58.490 33.333 11.06 0.00 35.52 2.90
3989 4337 9.725019 ACAATAATTGAACTGTGTTCTCATCTA 57.275 29.630 11.06 0.00 0.00 1.98
4010 4358 3.874392 AAAAAGAATTGCCTGCGCTAT 57.126 38.095 9.73 0.00 35.36 2.97
4011 4359 2.857592 AAAGAATTGCCTGCGCTATG 57.142 45.000 9.73 0.00 35.36 2.23
4012 4360 1.755179 AAGAATTGCCTGCGCTATGT 58.245 45.000 9.73 0.00 35.36 2.29
4013 4361 1.019673 AGAATTGCCTGCGCTATGTG 58.980 50.000 9.73 0.00 35.36 3.21
4014 4362 0.593263 GAATTGCCTGCGCTATGTGC 60.593 55.000 9.73 4.55 39.75 4.57
4015 4363 1.033746 AATTGCCTGCGCTATGTGCT 61.034 50.000 9.73 0.00 40.03 4.40
4016 4364 0.179048 ATTGCCTGCGCTATGTGCTA 60.179 50.000 9.73 1.37 40.03 3.49
4017 4365 0.811219 TTGCCTGCGCTATGTGCTAG 60.811 55.000 9.73 0.00 40.03 3.42
4018 4366 1.227380 GCCTGCGCTATGTGCTAGT 60.227 57.895 9.73 0.00 40.03 2.57
4019 4367 1.493950 GCCTGCGCTATGTGCTAGTG 61.494 60.000 9.73 0.00 40.03 2.74
4030 4378 3.532896 TGCTAGTGCACTTAGCCAC 57.467 52.632 29.28 15.28 45.31 5.01
4031 4379 0.976641 TGCTAGTGCACTTAGCCACT 59.023 50.000 29.28 10.23 45.31 4.00
4032 4380 1.347707 TGCTAGTGCACTTAGCCACTT 59.652 47.619 29.28 9.45 45.31 3.16
4033 4381 2.565391 TGCTAGTGCACTTAGCCACTTA 59.435 45.455 29.28 16.98 45.31 2.24
4034 4382 3.190874 GCTAGTGCACTTAGCCACTTAG 58.809 50.000 27.06 13.73 44.83 2.18
4035 4383 3.368531 GCTAGTGCACTTAGCCACTTAGT 60.369 47.826 27.06 0.00 44.83 2.24
4036 4384 4.142227 GCTAGTGCACTTAGCCACTTAGTA 60.142 45.833 27.06 0.19 44.83 1.82
4037 4385 4.884668 AGTGCACTTAGCCACTTAGTAA 57.115 40.909 15.25 0.00 44.83 2.24
4038 4386 5.422214 AGTGCACTTAGCCACTTAGTAAT 57.578 39.130 15.25 0.00 44.83 1.89
4039 4387 5.420409 AGTGCACTTAGCCACTTAGTAATC 58.580 41.667 15.25 0.00 44.83 1.75
4040 4388 5.187967 AGTGCACTTAGCCACTTAGTAATCT 59.812 40.000 15.25 0.00 44.83 2.40
4041 4389 5.875359 GTGCACTTAGCCACTTAGTAATCTT 59.125 40.000 10.32 0.00 44.83 2.40
4042 4390 6.371825 GTGCACTTAGCCACTTAGTAATCTTT 59.628 38.462 10.32 0.00 44.83 2.52
4043 4391 6.940298 TGCACTTAGCCACTTAGTAATCTTTT 59.060 34.615 0.00 0.00 44.83 2.27
4044 4392 7.447238 TGCACTTAGCCACTTAGTAATCTTTTT 59.553 33.333 0.00 0.00 44.83 1.94
4064 4412 5.361135 TTTTTACGGGCACTTTAGTTAGC 57.639 39.130 0.00 0.00 0.00 3.09
4065 4413 3.681593 TTACGGGCACTTTAGTTAGCA 57.318 42.857 0.00 0.00 0.00 3.49
4066 4414 2.554370 ACGGGCACTTTAGTTAGCAA 57.446 45.000 0.00 0.00 0.00 3.91
4067 4415 3.067684 ACGGGCACTTTAGTTAGCAAT 57.932 42.857 0.00 0.00 0.00 3.56
4068 4416 3.007635 ACGGGCACTTTAGTTAGCAATC 58.992 45.455 0.00 0.00 0.00 2.67
4069 4417 3.270877 CGGGCACTTTAGTTAGCAATCT 58.729 45.455 0.00 0.00 0.00 2.40
4070 4418 3.063997 CGGGCACTTTAGTTAGCAATCTG 59.936 47.826 0.00 0.00 0.00 2.90
4071 4419 4.261801 GGGCACTTTAGTTAGCAATCTGA 58.738 43.478 0.00 0.00 0.00 3.27
4072 4420 4.884164 GGGCACTTTAGTTAGCAATCTGAT 59.116 41.667 0.00 0.00 0.00 2.90
4073 4421 5.220931 GGGCACTTTAGTTAGCAATCTGATG 60.221 44.000 0.00 0.00 0.00 3.07
4074 4422 5.355350 GGCACTTTAGTTAGCAATCTGATGT 59.645 40.000 0.00 0.00 0.00 3.06
4075 4423 6.538742 GGCACTTTAGTTAGCAATCTGATGTA 59.461 38.462 0.00 0.00 0.00 2.29
4076 4424 7.065803 GGCACTTTAGTTAGCAATCTGATGTAA 59.934 37.037 0.00 0.00 0.00 2.41
4077 4425 8.450964 GCACTTTAGTTAGCAATCTGATGTAAA 58.549 33.333 0.00 0.00 0.00 2.01
4101 4449 7.902920 AAAAATACATTGTAGATGCCCAGAT 57.097 32.000 2.53 0.00 0.00 2.90
4102 4450 7.516198 AAAATACATTGTAGATGCCCAGATC 57.484 36.000 2.53 0.00 0.00 2.75
4103 4451 6.445451 AATACATTGTAGATGCCCAGATCT 57.555 37.500 2.53 0.00 36.61 2.75
4104 4452 4.082665 ACATTGTAGATGCCCAGATCTG 57.917 45.455 16.24 16.24 34.42 2.90
4105 4453 3.457380 ACATTGTAGATGCCCAGATCTGT 59.543 43.478 21.11 2.39 34.42 3.41
4106 4454 3.827008 TTGTAGATGCCCAGATCTGTC 57.173 47.619 21.11 11.89 34.42 3.51
4107 4455 2.042464 TGTAGATGCCCAGATCTGTCC 58.958 52.381 21.11 11.73 34.42 4.02
4108 4456 2.042464 GTAGATGCCCAGATCTGTCCA 58.958 52.381 21.11 16.66 34.42 4.02
4109 4457 1.588239 AGATGCCCAGATCTGTCCAA 58.412 50.000 21.11 4.69 31.14 3.53
4110 4458 2.133520 AGATGCCCAGATCTGTCCAAT 58.866 47.619 21.11 9.18 31.14 3.16
4111 4459 3.321039 AGATGCCCAGATCTGTCCAATA 58.679 45.455 21.11 2.37 31.14 1.90
4112 4460 3.718434 AGATGCCCAGATCTGTCCAATAA 59.282 43.478 21.11 0.55 31.14 1.40
4113 4461 3.565764 TGCCCAGATCTGTCCAATAAG 57.434 47.619 21.11 3.37 0.00 1.73
4114 4462 2.846206 TGCCCAGATCTGTCCAATAAGT 59.154 45.455 21.11 0.00 0.00 2.24
4115 4463 4.037222 TGCCCAGATCTGTCCAATAAGTA 58.963 43.478 21.11 0.00 0.00 2.24
4116 4464 4.473196 TGCCCAGATCTGTCCAATAAGTAA 59.527 41.667 21.11 0.00 0.00 2.24
4117 4465 5.045213 TGCCCAGATCTGTCCAATAAGTAAA 60.045 40.000 21.11 0.00 0.00 2.01
4118 4466 6.064717 GCCCAGATCTGTCCAATAAGTAAAT 58.935 40.000 21.11 0.00 0.00 1.40
4119 4467 7.147391 TGCCCAGATCTGTCCAATAAGTAAATA 60.147 37.037 21.11 0.00 0.00 1.40
4120 4468 7.885399 GCCCAGATCTGTCCAATAAGTAAATAT 59.115 37.037 21.11 0.00 0.00 1.28
4121 4469 9.799106 CCCAGATCTGTCCAATAAGTAAATATT 57.201 33.333 21.11 0.00 0.00 1.28
4177 4525 4.881019 GCTAGAGCTATCAAAGGGATGA 57.119 45.455 0.00 0.00 36.72 2.92
4178 4526 5.419239 GCTAGAGCTATCAAAGGGATGAT 57.581 43.478 0.00 0.00 42.52 2.45
4179 4527 5.418676 GCTAGAGCTATCAAAGGGATGATC 58.581 45.833 0.00 0.00 40.44 2.92
4180 4528 5.046735 GCTAGAGCTATCAAAGGGATGATCA 60.047 44.000 0.00 0.00 40.44 2.92
4181 4529 5.901413 AGAGCTATCAAAGGGATGATCAA 57.099 39.130 0.00 0.00 40.44 2.57
4182 4530 5.619220 AGAGCTATCAAAGGGATGATCAAC 58.381 41.667 0.00 0.00 40.44 3.18
4183 4531 5.131642 AGAGCTATCAAAGGGATGATCAACA 59.868 40.000 0.00 0.00 40.44 3.33
4184 4532 5.374921 AGCTATCAAAGGGATGATCAACAG 58.625 41.667 0.00 0.00 40.44 3.16
4185 4533 5.131642 AGCTATCAAAGGGATGATCAACAGA 59.868 40.000 0.00 0.00 40.44 3.41
4186 4534 5.469421 GCTATCAAAGGGATGATCAACAGAG 59.531 44.000 0.00 0.00 40.44 3.35
4187 4535 3.614092 TCAAAGGGATGATCAACAGAGC 58.386 45.455 0.00 0.00 0.00 4.09
4188 4536 2.322355 AAGGGATGATCAACAGAGCG 57.678 50.000 0.00 0.00 0.00 5.03
4189 4537 1.198713 AGGGATGATCAACAGAGCGT 58.801 50.000 0.00 0.00 0.00 5.07
4190 4538 1.134580 AGGGATGATCAACAGAGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
4191 4539 1.134699 GGGATGATCAACAGAGCGTGA 60.135 52.381 0.00 0.00 0.00 4.35
4192 4540 2.621338 GGATGATCAACAGAGCGTGAA 58.379 47.619 0.00 0.00 0.00 3.18
4193 4541 2.606725 GGATGATCAACAGAGCGTGAAG 59.393 50.000 0.00 0.00 0.00 3.02
4194 4542 2.084610 TGATCAACAGAGCGTGAAGG 57.915 50.000 0.00 0.00 0.00 3.46
4195 4543 1.618343 TGATCAACAGAGCGTGAAGGA 59.382 47.619 0.00 0.00 0.00 3.36
4196 4544 2.234661 TGATCAACAGAGCGTGAAGGAT 59.765 45.455 0.00 0.00 0.00 3.24
4197 4545 2.370281 TCAACAGAGCGTGAAGGATC 57.630 50.000 0.00 0.00 0.00 3.36
4198 4546 1.618343 TCAACAGAGCGTGAAGGATCA 59.382 47.619 0.00 0.00 0.00 2.92
4199 4547 1.998315 CAACAGAGCGTGAAGGATCAG 59.002 52.381 0.00 0.00 35.88 2.90
4200 4548 1.261480 ACAGAGCGTGAAGGATCAGT 58.739 50.000 0.00 0.00 35.88 3.41
4201 4549 1.067283 ACAGAGCGTGAAGGATCAGTG 60.067 52.381 0.00 0.00 35.88 3.66
4202 4550 1.203287 CAGAGCGTGAAGGATCAGTGA 59.797 52.381 0.00 0.00 35.88 3.41
4203 4551 2.106566 AGAGCGTGAAGGATCAGTGAT 58.893 47.619 4.98 4.98 35.88 3.06
4204 4552 2.159128 AGAGCGTGAAGGATCAGTGATG 60.159 50.000 11.20 0.00 35.88 3.07
4205 4553 1.552337 AGCGTGAAGGATCAGTGATGT 59.448 47.619 11.20 0.00 35.88 3.06
4206 4554 2.760650 AGCGTGAAGGATCAGTGATGTA 59.239 45.455 11.20 0.00 35.88 2.29
4207 4555 2.860735 GCGTGAAGGATCAGTGATGTAC 59.139 50.000 11.20 0.57 35.88 2.90
4208 4556 3.429547 GCGTGAAGGATCAGTGATGTACT 60.430 47.826 11.20 3.07 41.36 2.73
4217 4565 2.425143 AGTGATGTACTGCCATTGGG 57.575 50.000 4.53 0.00 38.49 4.12
4218 4566 1.064463 AGTGATGTACTGCCATTGGGG 60.064 52.381 4.53 0.00 38.49 4.96
4219 4567 0.998928 TGATGTACTGCCATTGGGGT 59.001 50.000 4.53 0.00 39.65 4.95
4220 4568 1.357420 TGATGTACTGCCATTGGGGTT 59.643 47.619 4.53 0.00 39.65 4.11
4221 4569 2.024414 GATGTACTGCCATTGGGGTTC 58.976 52.381 4.53 0.00 39.65 3.62
4222 4570 1.072266 TGTACTGCCATTGGGGTTCT 58.928 50.000 4.53 0.00 39.65 3.01
4223 4571 1.427368 TGTACTGCCATTGGGGTTCTT 59.573 47.619 4.53 0.00 39.65 2.52
4224 4572 2.645297 TGTACTGCCATTGGGGTTCTTA 59.355 45.455 4.53 0.00 39.65 2.10
4225 4573 3.268334 TGTACTGCCATTGGGGTTCTTAT 59.732 43.478 4.53 0.00 39.65 1.73
4226 4574 3.018423 ACTGCCATTGGGGTTCTTATC 57.982 47.619 4.53 0.00 39.65 1.75
4227 4575 2.310538 CTGCCATTGGGGTTCTTATCC 58.689 52.381 4.53 0.00 39.65 2.59
4228 4576 1.063266 TGCCATTGGGGTTCTTATCCC 60.063 52.381 4.53 0.00 43.90 3.85
4236 4584 4.251103 GGGGTTCTTATCCCAGAAATGT 57.749 45.455 3.37 0.00 46.26 2.71
4237 4585 4.610333 GGGGTTCTTATCCCAGAAATGTT 58.390 43.478 3.37 0.00 46.26 2.71
4238 4586 5.023452 GGGGTTCTTATCCCAGAAATGTTT 58.977 41.667 3.37 0.00 46.26 2.83
4239 4587 6.192044 GGGGTTCTTATCCCAGAAATGTTTA 58.808 40.000 3.37 0.00 46.26 2.01
4240 4588 6.839134 GGGGTTCTTATCCCAGAAATGTTTAT 59.161 38.462 3.37 0.00 46.26 1.40
4241 4589 7.014326 GGGGTTCTTATCCCAGAAATGTTTATC 59.986 40.741 3.37 0.00 46.26 1.75
4242 4590 7.559897 GGGTTCTTATCCCAGAAATGTTTATCA 59.440 37.037 0.00 0.00 44.05 2.15
4243 4591 9.136323 GGTTCTTATCCCAGAAATGTTTATCAT 57.864 33.333 0.00 0.00 34.50 2.45
4244 4592 9.956720 GTTCTTATCCCAGAAATGTTTATCATG 57.043 33.333 0.00 0.00 34.50 3.07
4245 4593 8.696043 TCTTATCCCAGAAATGTTTATCATGG 57.304 34.615 0.00 0.00 36.81 3.66
4246 4594 8.281531 TCTTATCCCAGAAATGTTTATCATGGT 58.718 33.333 0.00 0.00 36.81 3.55
4247 4595 6.720112 ATCCCAGAAATGTTTATCATGGTG 57.280 37.500 0.00 0.00 36.81 4.17
4248 4596 4.402155 TCCCAGAAATGTTTATCATGGTGC 59.598 41.667 0.00 0.00 36.81 5.01
4249 4597 4.160065 CCCAGAAATGTTTATCATGGTGCA 59.840 41.667 0.00 0.00 36.81 4.57
4250 4598 5.163385 CCCAGAAATGTTTATCATGGTGCAT 60.163 40.000 0.00 0.00 36.81 3.96
4251 4599 6.342906 CCAGAAATGTTTATCATGGTGCATT 58.657 36.000 0.00 0.00 36.81 3.56
4252 4600 6.477688 CCAGAAATGTTTATCATGGTGCATTC 59.522 38.462 0.00 0.00 36.81 2.67
4253 4601 7.262772 CAGAAATGTTTATCATGGTGCATTCT 58.737 34.615 0.00 0.00 36.81 2.40
4254 4602 8.407832 CAGAAATGTTTATCATGGTGCATTCTA 58.592 33.333 0.00 0.00 36.81 2.10
4255 4603 8.627403 AGAAATGTTTATCATGGTGCATTCTAG 58.373 33.333 0.00 0.00 36.81 2.43
4256 4604 6.889301 ATGTTTATCATGGTGCATTCTAGG 57.111 37.500 0.00 0.00 35.19 3.02
4257 4605 5.754782 TGTTTATCATGGTGCATTCTAGGT 58.245 37.500 0.00 0.00 0.00 3.08
4258 4606 5.822519 TGTTTATCATGGTGCATTCTAGGTC 59.177 40.000 0.00 0.00 0.00 3.85
4259 4607 3.498774 ATCATGGTGCATTCTAGGTCC 57.501 47.619 0.00 0.00 0.00 4.46
4260 4608 1.138859 TCATGGTGCATTCTAGGTCCG 59.861 52.381 0.00 0.00 0.00 4.79
4261 4609 0.179045 ATGGTGCATTCTAGGTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
4262 4610 1.264749 TGGTGCATTCTAGGTCCGCT 61.265 55.000 0.00 0.00 0.00 5.52
4263 4611 0.811616 GGTGCATTCTAGGTCCGCTG 60.812 60.000 0.00 0.00 0.00 5.18
4264 4612 1.153369 TGCATTCTAGGTCCGCTGC 60.153 57.895 0.00 0.00 0.00 5.25
4265 4613 2.240500 GCATTCTAGGTCCGCTGCG 61.241 63.158 16.34 16.34 0.00 5.18
4266 4614 2.107141 ATTCTAGGTCCGCTGCGC 59.893 61.111 18.00 0.00 0.00 6.09
4267 4615 2.721167 ATTCTAGGTCCGCTGCGCA 61.721 57.895 18.00 10.98 0.00 6.09
4268 4616 2.238847 ATTCTAGGTCCGCTGCGCAA 62.239 55.000 18.00 3.63 0.00 4.85
4269 4617 2.202932 CTAGGTCCGCTGCGCAAT 60.203 61.111 18.00 4.54 0.00 3.56
4270 4618 2.202878 TAGGTCCGCTGCGCAATC 60.203 61.111 18.00 7.18 0.00 2.67
4271 4619 3.733344 TAGGTCCGCTGCGCAATCC 62.733 63.158 18.00 14.52 0.00 3.01
4273 4621 3.127533 GTCCGCTGCGCAATCCTT 61.128 61.111 18.00 0.00 0.00 3.36
4274 4622 3.126879 TCCGCTGCGCAATCCTTG 61.127 61.111 18.00 0.00 0.00 3.61
4275 4623 3.434319 CCGCTGCGCAATCCTTGT 61.434 61.111 18.00 0.00 0.00 3.16
4276 4624 2.202388 CGCTGCGCAATCCTTGTG 60.202 61.111 13.05 0.56 43.79 3.33
4277 4625 2.679934 CGCTGCGCAATCCTTGTGA 61.680 57.895 13.05 0.00 43.66 3.58
4278 4626 1.580942 GCTGCGCAATCCTTGTGAA 59.419 52.632 13.05 0.00 43.66 3.18
4279 4627 3.689224 CTGCGCAATCCTTGTGAAG 57.311 52.632 13.05 0.00 43.66 3.02
4280 4628 3.320823 TGCGCAATCCTTGTGAAGA 57.679 47.368 8.16 0.00 43.66 2.87
4281 4629 0.874390 TGCGCAATCCTTGTGAAGAC 59.126 50.000 8.16 0.00 43.66 3.01
4282 4630 0.874390 GCGCAATCCTTGTGAAGACA 59.126 50.000 0.30 0.00 43.66 3.41
4283 4631 1.266718 GCGCAATCCTTGTGAAGACAA 59.733 47.619 0.30 0.00 43.66 3.18
4284 4632 2.287547 GCGCAATCCTTGTGAAGACAAA 60.288 45.455 0.30 0.00 41.62 2.83
4285 4633 3.612479 GCGCAATCCTTGTGAAGACAAAT 60.612 43.478 0.30 0.00 41.62 2.32
4286 4634 4.549458 CGCAATCCTTGTGAAGACAAATT 58.451 39.130 0.00 0.00 41.62 1.82
4287 4635 4.984161 CGCAATCCTTGTGAAGACAAATTT 59.016 37.500 0.00 0.00 41.62 1.82
4288 4636 5.463061 CGCAATCCTTGTGAAGACAAATTTT 59.537 36.000 0.00 0.00 41.62 1.82
4289 4637 6.640499 CGCAATCCTTGTGAAGACAAATTTTA 59.360 34.615 0.00 0.00 41.62 1.52
4290 4638 7.148918 CGCAATCCTTGTGAAGACAAATTTTAG 60.149 37.037 0.00 0.00 41.62 1.85
4291 4639 7.867403 GCAATCCTTGTGAAGACAAATTTTAGA 59.133 33.333 0.00 0.00 41.62 2.10
4292 4640 9.918630 CAATCCTTGTGAAGACAAATTTTAGAT 57.081 29.630 0.00 0.00 41.62 1.98
4293 4641 9.918630 AATCCTTGTGAAGACAAATTTTAGATG 57.081 29.630 0.00 0.00 41.62 2.90
4294 4642 8.690203 TCCTTGTGAAGACAAATTTTAGATGA 57.310 30.769 0.00 0.00 41.62 2.92
4295 4643 9.130661 TCCTTGTGAAGACAAATTTTAGATGAA 57.869 29.630 0.00 0.00 41.62 2.57
4296 4644 9.748708 CCTTGTGAAGACAAATTTTAGATGAAA 57.251 29.630 0.00 0.00 41.62 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.280797 GTGTGGCGTCAAGGAGCA 60.281 61.111 0.00 0.00 34.54 4.26
69 70 2.425592 CCAGTGTGGCGTCAAGGA 59.574 61.111 0.00 0.00 0.00 3.36
90 91 1.762522 CGCAGATCTAGGGCCATGGT 61.763 60.000 14.67 0.00 0.00 3.55
128 129 0.545071 TGCAGATCTGACAGGGGTGA 60.545 55.000 27.04 0.00 0.00 4.02
131 132 1.153489 CGTGCAGATCTGACAGGGG 60.153 63.158 27.04 11.30 0.00 4.79
134 135 0.805322 GGAGCGTGCAGATCTGACAG 60.805 60.000 27.04 15.75 35.20 3.51
158 159 3.056313 GCAGATCCGGCAAAGGCAC 62.056 63.158 0.00 0.00 43.71 5.01
159 160 2.751436 GCAGATCCGGCAAAGGCA 60.751 61.111 0.00 0.00 43.71 4.75
160 161 2.751436 TGCAGATCCGGCAAAGGC 60.751 61.111 7.16 0.00 38.54 4.35
161 162 2.753966 CGTGCAGATCCGGCAAAGG 61.754 63.158 10.88 1.48 43.91 3.11
164 165 3.974835 ATGCGTGCAGATCCGGCAA 62.975 57.895 10.88 0.00 43.91 4.52
165 166 4.471908 ATGCGTGCAGATCCGGCA 62.472 61.111 5.61 5.61 39.32 5.69
166 167 3.945434 CATGCGTGCAGATCCGGC 61.945 66.667 0.00 0.17 0.00 6.13
167 168 3.274586 CCATGCGTGCAGATCCGG 61.275 66.667 0.00 0.00 0.00 5.14
170 171 1.281960 GCATCCATGCGTGCAGATC 59.718 57.895 13.64 0.00 44.67 2.75
171 172 3.428797 GCATCCATGCGTGCAGAT 58.571 55.556 13.64 0.00 44.67 2.90
182 194 4.321966 TGTTGACGGCGGCATCCA 62.322 61.111 19.81 14.58 0.00 3.41
193 205 2.694615 CGAGCGTCGTCGTGTTGAC 61.695 63.158 3.66 0.00 44.53 3.18
195 207 4.104633 GCGAGCGTCGTCGTGTTG 62.105 66.667 15.21 0.00 42.81 3.33
206 218 4.389576 GCAAAGGTGTGGCGAGCG 62.390 66.667 0.00 0.00 0.00 5.03
338 350 2.535331 GCACACCACCCTACCCCTT 61.535 63.158 0.00 0.00 0.00 3.95
345 357 3.941188 CTGGACGCACACCACCCT 61.941 66.667 0.00 0.00 33.57 4.34
347 359 1.298859 GAATCTGGACGCACACCACC 61.299 60.000 0.00 0.00 33.57 4.61
354 366 2.721167 CCGGGAGAATCTGGACGCA 61.721 63.158 0.00 0.00 33.35 5.24
358 384 2.768344 GGCCCGGGAGAATCTGGA 60.768 66.667 29.31 0.00 33.35 3.86
379 405 3.074369 TCTTCATCGCTCCCCGCA 61.074 61.111 0.00 0.00 39.08 5.69
391 417 5.235850 TGTTGCTATTTACACCCTCTTCA 57.764 39.130 0.00 0.00 0.00 3.02
392 418 7.048512 ACTATGTTGCTATTTACACCCTCTTC 58.951 38.462 0.00 0.00 0.00 2.87
393 419 6.958767 ACTATGTTGCTATTTACACCCTCTT 58.041 36.000 0.00 0.00 0.00 2.85
404 430 8.279970 TGCACTATTCAAACTATGTTGCTATT 57.720 30.769 0.00 0.00 0.00 1.73
411 437 5.491070 TGAGCTGCACTATTCAAACTATGT 58.509 37.500 1.02 0.00 0.00 2.29
438 464 2.747460 CACGGCCTCACACCCATG 60.747 66.667 0.00 0.00 0.00 3.66
442 468 3.825160 TTGCTCACGGCCTCACACC 62.825 63.158 0.00 0.00 40.92 4.16
446 472 2.803155 GATGGTTGCTCACGGCCTCA 62.803 60.000 0.00 0.00 40.92 3.86
447 473 2.045926 ATGGTTGCTCACGGCCTC 60.046 61.111 0.00 0.00 40.92 4.70
452 478 1.028330 ATGCTGGATGGTTGCTCACG 61.028 55.000 0.00 0.00 0.00 4.35
455 481 1.688772 ATGATGCTGGATGGTTGCTC 58.311 50.000 0.00 0.00 0.00 4.26
460 486 0.107066 TGCGAATGATGCTGGATGGT 60.107 50.000 0.00 0.00 0.00 3.55
466 492 2.417586 TGAGTCTTTGCGAATGATGCTG 59.582 45.455 0.00 0.00 0.00 4.41
472 498 9.773328 TTATTATTTTCTGAGTCTTTGCGAATG 57.227 29.630 0.00 0.00 0.00 2.67
483 509 9.520204 CCATCGCAAATTTATTATTTTCTGAGT 57.480 29.630 0.00 0.00 0.00 3.41
484 510 9.734620 TCCATCGCAAATTTATTATTTTCTGAG 57.265 29.630 0.00 0.00 0.00 3.35
496 522 9.868277 ACAGATTTTTATTCCATCGCAAATTTA 57.132 25.926 0.00 0.00 0.00 1.40
499 525 7.489113 GTCACAGATTTTTATTCCATCGCAAAT 59.511 33.333 0.00 0.00 0.00 2.32
500 526 6.806249 GTCACAGATTTTTATTCCATCGCAAA 59.194 34.615 0.00 0.00 0.00 3.68
502 528 5.447144 CGTCACAGATTTTTATTCCATCGCA 60.447 40.000 0.00 0.00 0.00 5.10
505 531 6.677781 TCCGTCACAGATTTTTATTCCATC 57.322 37.500 0.00 0.00 0.00 3.51
508 534 7.083875 TGATTCCGTCACAGATTTTTATTCC 57.916 36.000 0.00 0.00 0.00 3.01
536 562 3.938334 GCTCCCTTTTTCAAGCACAAAAA 59.062 39.130 0.00 0.00 34.86 1.94
537 563 3.055530 TGCTCCCTTTTTCAAGCACAAAA 60.056 39.130 0.00 0.00 39.69 2.44
538 564 2.499289 TGCTCCCTTTTTCAAGCACAAA 59.501 40.909 0.00 0.00 39.69 2.83
539 565 2.101249 CTGCTCCCTTTTTCAAGCACAA 59.899 45.455 0.00 0.00 39.69 3.33
540 566 1.682854 CTGCTCCCTTTTTCAAGCACA 59.317 47.619 0.00 0.00 39.69 4.57
541 567 1.956477 TCTGCTCCCTTTTTCAAGCAC 59.044 47.619 0.00 0.00 39.69 4.40
542 568 2.233271 CTCTGCTCCCTTTTTCAAGCA 58.767 47.619 0.00 0.00 42.16 3.91
544 570 3.753797 GGTACTCTGCTCCCTTTTTCAAG 59.246 47.826 0.00 0.00 0.00 3.02
546 572 2.039879 GGGTACTCTGCTCCCTTTTTCA 59.960 50.000 0.00 0.00 38.29 2.69
547 573 2.712709 GGGTACTCTGCTCCCTTTTTC 58.287 52.381 0.00 0.00 38.29 2.29
548 574 2.881111 GGGTACTCTGCTCCCTTTTT 57.119 50.000 0.00 0.00 38.29 1.94
553 579 3.994931 TTTTTAGGGTACTCTGCTCCC 57.005 47.619 5.20 0.00 41.36 4.30
571 597 1.133606 TCTCCGCTTTGGTCCCTTTTT 60.134 47.619 0.00 0.00 39.52 1.94
572 598 0.476771 TCTCCGCTTTGGTCCCTTTT 59.523 50.000 0.00 0.00 39.52 2.27
574 600 0.836400 TCTCTCCGCTTTGGTCCCTT 60.836 55.000 0.00 0.00 39.52 3.95
575 601 0.618968 ATCTCTCCGCTTTGGTCCCT 60.619 55.000 0.00 0.00 39.52 4.20
578 604 4.442706 TCATTTATCTCTCCGCTTTGGTC 58.557 43.478 0.00 0.00 39.52 4.02
579 605 4.487714 TCATTTATCTCTCCGCTTTGGT 57.512 40.909 0.00 0.00 39.52 3.67
582 608 6.259608 CACTTCATCATTTATCTCTCCGCTTT 59.740 38.462 0.00 0.00 0.00 3.51
583 609 5.757320 CACTTCATCATTTATCTCTCCGCTT 59.243 40.000 0.00 0.00 0.00 4.68
584 610 5.295950 CACTTCATCATTTATCTCTCCGCT 58.704 41.667 0.00 0.00 0.00 5.52
585 611 4.084118 GCACTTCATCATTTATCTCTCCGC 60.084 45.833 0.00 0.00 0.00 5.54
586 612 4.450419 GGCACTTCATCATTTATCTCTCCG 59.550 45.833 0.00 0.00 0.00 4.63
587 613 4.450419 CGGCACTTCATCATTTATCTCTCC 59.550 45.833 0.00 0.00 0.00 3.71
588 614 5.053145 ACGGCACTTCATCATTTATCTCTC 58.947 41.667 0.00 0.00 0.00 3.20
589 615 5.028549 ACGGCACTTCATCATTTATCTCT 57.971 39.130 0.00 0.00 0.00 3.10
590 616 5.065218 ACAACGGCACTTCATCATTTATCTC 59.935 40.000 0.00 0.00 0.00 2.75
591 617 4.943705 ACAACGGCACTTCATCATTTATCT 59.056 37.500 0.00 0.00 0.00 1.98
592 618 5.235305 ACAACGGCACTTCATCATTTATC 57.765 39.130 0.00 0.00 0.00 1.75
593 619 5.065988 GGTACAACGGCACTTCATCATTTAT 59.934 40.000 0.00 0.00 0.00 1.40
599 654 0.719465 CGGTACAACGGCACTTCATC 59.281 55.000 0.00 0.00 0.00 2.92
626 681 1.302192 GCGTGCTTCTTGGGGTGTA 60.302 57.895 0.00 0.00 0.00 2.90
670 739 2.456577 GAGAGGGATGAGAGATAGCCC 58.543 57.143 0.00 0.00 44.16 5.19
780 850 4.509737 GGAGTACCGCACCTCCGC 62.510 72.222 0.00 0.00 0.00 5.54
791 861 1.591863 GAATGCGCGGGAGGAGTAC 60.592 63.158 8.83 0.00 0.00 2.73
912 1028 2.353607 GCGATCCAGTAGCGTCGG 60.354 66.667 0.00 0.00 39.78 4.79
913 1029 2.722548 CGCGATCCAGTAGCGTCG 60.723 66.667 0.00 0.00 45.28 5.12
917 1033 2.962253 GCACCGCGATCCAGTAGC 60.962 66.667 8.23 0.00 0.00 3.58
1085 1275 2.125673 GGCTTAGCGTTCCAGCGA 60.126 61.111 0.00 0.00 43.00 4.93
1163 1353 1.676006 CAAGAAAGTTGTTCAGCCCGT 59.324 47.619 0.00 0.00 0.00 5.28
1347 1537 0.846693 AGAAGGCAACCACCAACTCT 59.153 50.000 0.00 0.00 37.17 3.24
1350 1540 0.310854 CGAAGAAGGCAACCACCAAC 59.689 55.000 0.00 0.00 37.17 3.77
1503 1700 3.069586 TGTTGAACGAGAAGACATCAGGT 59.930 43.478 0.00 0.00 0.00 4.00
1833 2030 8.472413 CAAAGTGAATCCATAAATGAGTTCCAT 58.528 33.333 0.00 0.00 36.99 3.41
1885 2082 4.818546 AGCCATGGAGTCAAAAATATCTCG 59.181 41.667 18.40 0.00 0.00 4.04
1917 2114 7.918076 AGTAGGAGACAATATCAGGTTTTTGA 58.082 34.615 0.00 0.00 0.00 2.69
1962 2159 2.793933 TCGAAGTATCCTTCTTTCGCG 58.206 47.619 0.00 0.00 44.12 5.87
1986 2183 6.020916 GCATCGAATTGAACAAATCAGTCATG 60.021 38.462 0.00 0.00 39.77 3.07
1996 2193 6.403527 CCATTCTGTAGCATCGAATTGAACAA 60.404 38.462 0.00 0.00 0.00 2.83
1998 2195 5.065218 ACCATTCTGTAGCATCGAATTGAAC 59.935 40.000 0.00 0.00 0.00 3.18
2053 2250 7.012799 TCCACGTTTAGCATATGCATTAATCAA 59.987 33.333 28.62 8.02 45.16 2.57
2205 2402 9.880157 CCTTGATTGACCATCTGATTAAATTTT 57.120 29.630 0.00 0.00 32.34 1.82
2301 2498 4.752146 CTTCAGAAATCAATTCCTTGGCC 58.248 43.478 0.00 0.00 38.94 5.36
2325 2522 7.310664 TGTTAGAACACAGACCTCTATTAACG 58.689 38.462 0.00 0.00 33.17 3.18
2365 2562 6.939730 TCTTTGCACAGGTCATTTATTACAGA 59.060 34.615 0.00 0.00 0.00 3.41
2376 2573 2.727123 TTCCTTCTTTGCACAGGTCA 57.273 45.000 0.00 0.00 0.00 4.02
2422 2631 5.065218 GCTGACCAATACCTACAATGAAGTG 59.935 44.000 0.00 0.00 0.00 3.16
2633 2843 0.036010 CCCGCTGAGTGACATTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
2838 3048 5.940192 TCATTGCACGTAGTTTCTTGAAT 57.060 34.783 0.00 0.00 41.61 2.57
2988 3198 8.565896 TGAAGTTTGTCATCATTAAGCTGTAT 57.434 30.769 0.00 0.00 0.00 2.29
3009 3219 4.619160 GCCAGCAACCCTTCTTTTATGAAG 60.619 45.833 0.00 0.00 42.10 3.02
3058 3268 1.002544 AGCACAGTTAGCCTTCTCCAC 59.997 52.381 0.00 0.00 0.00 4.02
3071 3281 1.757306 CTGGAGTTGGGAGCACAGT 59.243 57.895 0.00 0.00 0.00 3.55
3102 3312 1.152984 CAGCAACACCCTGACCACA 60.153 57.895 0.00 0.00 32.03 4.17
3143 3353 6.620678 TCAAGTTTAGCCAGATAATTTGCAC 58.379 36.000 0.00 0.00 0.00 4.57
3149 3359 7.408756 TTTGCATCAAGTTTAGCCAGATAAT 57.591 32.000 0.00 0.00 0.00 1.28
3156 3366 4.870363 TCTGTTTTGCATCAAGTTTAGCC 58.130 39.130 0.00 0.00 0.00 3.93
3178 3388 5.947228 ATCGTTGAAACATCAAGTGACAT 57.053 34.783 0.00 0.00 0.00 3.06
3213 3423 2.107366 CCTTCCCCTGAGAAGAGAGAC 58.893 57.143 2.91 0.00 45.08 3.36
3240 3450 2.544480 GCAATTTTACGTGCTCCCTC 57.456 50.000 0.00 0.00 37.78 4.30
3287 3498 5.437060 ACTGTATCAATTGTTAGCCGGAAT 58.563 37.500 5.05 0.00 0.00 3.01
3291 3502 8.487970 CAAGTATACTGTATCAATTGTTAGCCG 58.512 37.037 6.06 0.00 0.00 5.52
3325 3537 7.724061 AGTGAATACCACCTTGTTTTTCAGTAT 59.276 33.333 0.00 0.00 46.87 2.12
3355 3567 1.133790 GGCAATGTCATTCTGTCAGCC 59.866 52.381 6.59 6.59 0.00 4.85
3389 3603 6.785963 AGGGATGAATTATCTGCATTTCCAAT 59.214 34.615 0.00 0.00 36.03 3.16
3430 3646 8.636843 CAAACAAAAACAACAACAAAATGGATG 58.363 29.630 0.00 0.00 0.00 3.51
3433 3649 8.636843 CATCAAACAAAAACAACAACAAAATGG 58.363 29.630 0.00 0.00 0.00 3.16
3444 3660 8.489990 AACATGACATCATCAAACAAAAACAA 57.510 26.923 0.00 0.00 41.93 2.83
3506 3722 4.213996 ACATTCATATGACCCTCAGGGCT 61.214 47.826 10.84 0.00 44.45 5.19
3525 3741 3.541242 TCATCACAAAAAGGGGGACAT 57.459 42.857 0.00 0.00 0.00 3.06
3527 3743 3.496331 TCTTCATCACAAAAAGGGGGAC 58.504 45.455 0.00 0.00 0.00 4.46
3553 3769 9.740710 ATAGCAAACTTTCCAGTTAAGAGTTAT 57.259 29.630 0.00 0.00 42.89 1.89
3561 3777 6.017440 GTGACACATAGCAAACTTTCCAGTTA 60.017 38.462 0.00 0.00 42.89 2.24
3563 3779 4.275936 GTGACACATAGCAAACTTTCCAGT 59.724 41.667 0.00 0.00 33.11 4.00
3608 3825 6.813152 ACACCTTCTTGTTGCATAATAAATGC 59.187 34.615 3.05 3.05 44.76 3.56
3609 3826 8.028354 TCACACCTTCTTGTTGCATAATAAATG 58.972 33.333 0.00 0.00 0.00 2.32
3610 3827 8.121305 TCACACCTTCTTGTTGCATAATAAAT 57.879 30.769 0.00 0.00 0.00 1.40
3611 3828 7.517614 TCACACCTTCTTGTTGCATAATAAA 57.482 32.000 0.00 0.00 0.00 1.40
3612 3829 7.517614 TTCACACCTTCTTGTTGCATAATAA 57.482 32.000 0.00 0.00 0.00 1.40
3613 3830 7.176515 ACATTCACACCTTCTTGTTGCATAATA 59.823 33.333 0.00 0.00 0.00 0.98
3615 3832 5.301551 ACATTCACACCTTCTTGTTGCATAA 59.698 36.000 0.00 0.00 0.00 1.90
3631 3913 8.729756 CCATCTCACAGTTATTAAACATTCACA 58.270 33.333 0.00 0.00 38.12 3.58
3636 3918 8.862325 TGAACCATCTCACAGTTATTAAACAT 57.138 30.769 0.00 0.00 38.12 2.71
3660 3982 5.640783 TGACAGAGAGAAAACATAGTGCATG 59.359 40.000 0.00 0.00 40.78 4.06
3744 4079 8.045176 AGCAATCCTAGTTTTCTGTAACATTC 57.955 34.615 0.00 0.00 0.00 2.67
3792 4127 5.914898 ATGGCTGTAACCTGTAAATTTCC 57.085 39.130 0.00 0.00 0.00 3.13
3801 4137 1.203052 CCTTGCAATGGCTGTAACCTG 59.797 52.381 0.00 0.00 41.91 4.00
3802 4138 1.075374 TCCTTGCAATGGCTGTAACCT 59.925 47.619 0.00 0.00 41.91 3.50
3803 4139 1.544724 TCCTTGCAATGGCTGTAACC 58.455 50.000 0.00 0.00 41.91 2.85
3804 4140 3.658757 TTTCCTTGCAATGGCTGTAAC 57.341 42.857 0.00 0.00 41.91 2.50
3805 4141 4.282957 TGATTTTCCTTGCAATGGCTGTAA 59.717 37.500 0.00 0.00 41.91 2.41
3806 4142 3.831333 TGATTTTCCTTGCAATGGCTGTA 59.169 39.130 0.00 0.00 41.91 2.74
3810 4146 5.048573 ACAAATTGATTTTCCTTGCAATGGC 60.049 36.000 0.00 0.00 41.68 4.40
3836 4172 5.047377 TGAAACTAACCAGGATTTCATTGGC 60.047 40.000 0.00 0.00 36.42 4.52
3837 4173 6.209391 ACTGAAACTAACCAGGATTTCATTGG 59.791 38.462 0.00 0.00 39.60 3.16
3841 4177 6.425721 CGTTACTGAAACTAACCAGGATTTCA 59.574 38.462 0.00 3.36 38.42 2.69
3842 4178 6.620089 GCGTTACTGAAACTAACCAGGATTTC 60.620 42.308 0.00 0.00 35.81 2.17
3843 4179 5.180680 GCGTTACTGAAACTAACCAGGATTT 59.819 40.000 0.00 0.00 35.81 2.17
3845 4181 4.251268 GCGTTACTGAAACTAACCAGGAT 58.749 43.478 0.00 0.00 35.81 3.24
3846 4182 3.555586 GGCGTTACTGAAACTAACCAGGA 60.556 47.826 0.00 0.00 35.81 3.86
3847 4183 2.740447 GGCGTTACTGAAACTAACCAGG 59.260 50.000 0.00 0.00 35.81 4.45
3855 4192 3.299340 TGAGAGAGGCGTTACTGAAAC 57.701 47.619 0.00 0.00 34.52 2.78
3865 4202 2.621055 AGCACTACTATTGAGAGAGGCG 59.379 50.000 0.00 0.00 0.00 5.52
3877 4214 9.116067 ACACTTCAACAAAAATTAGCACTACTA 57.884 29.630 0.00 0.00 0.00 1.82
3899 4236 9.569122 AGCCCGTGAATAAAATATAATTACACT 57.431 29.630 0.00 0.00 0.00 3.55
3905 4242 7.120726 GCCTACAGCCCGTGAATAAAATATAAT 59.879 37.037 0.00 0.00 34.35 1.28
3913 4261 1.134521 CAGCCTACAGCCCGTGAATAA 60.135 52.381 0.00 0.00 45.47 1.40
3920 4268 2.954684 TTCACCAGCCTACAGCCCG 61.955 63.158 0.00 0.00 45.47 6.13
3927 4275 3.500448 TCAATTGTGTTCACCAGCCTA 57.500 42.857 5.13 0.00 0.00 3.93
3930 4278 2.742774 GGTTCAATTGTGTTCACCAGC 58.257 47.619 5.13 0.00 0.00 4.85
3932 4280 2.098280 CACGGTTCAATTGTGTTCACCA 59.902 45.455 5.13 0.00 0.00 4.17
3941 4289 6.490877 GTGTAAAAGAACACGGTTCAATTG 57.509 37.500 15.94 0.00 40.31 2.32
3962 4310 8.509690 AGATGAGAACACAGTTCAATTATTGTG 58.490 33.333 11.92 3.12 44.81 3.33
3963 4311 8.627208 AGATGAGAACACAGTTCAATTATTGT 57.373 30.769 11.92 0.00 0.00 2.71
3990 4338 3.056607 ACATAGCGCAGGCAATTCTTTTT 60.057 39.130 11.47 0.00 43.41 1.94
3991 4339 2.493278 ACATAGCGCAGGCAATTCTTTT 59.507 40.909 11.47 0.00 43.41 2.27
3992 4340 2.094675 ACATAGCGCAGGCAATTCTTT 58.905 42.857 11.47 0.00 43.41 2.52
3993 4341 1.402968 CACATAGCGCAGGCAATTCTT 59.597 47.619 11.47 0.00 43.41 2.52
3994 4342 1.019673 CACATAGCGCAGGCAATTCT 58.980 50.000 11.47 0.00 43.41 2.40
3995 4343 0.593263 GCACATAGCGCAGGCAATTC 60.593 55.000 11.47 0.00 43.41 2.17
3996 4344 1.434696 GCACATAGCGCAGGCAATT 59.565 52.632 11.47 0.00 43.41 2.32
3997 4345 3.113745 GCACATAGCGCAGGCAAT 58.886 55.556 11.47 0.00 43.41 3.56
4013 4361 2.100605 AAGTGGCTAAGTGCACTAGC 57.899 50.000 26.78 26.78 45.15 3.42
4014 4362 4.457834 ACTAAGTGGCTAAGTGCACTAG 57.542 45.455 22.01 17.65 45.15 2.57
4015 4363 5.988310 TTACTAAGTGGCTAAGTGCACTA 57.012 39.130 22.01 7.78 45.15 2.74
4016 4364 4.884668 TTACTAAGTGGCTAAGTGCACT 57.115 40.909 15.25 15.25 45.15 4.40
4017 4365 5.420409 AGATTACTAAGTGGCTAAGTGCAC 58.580 41.667 9.40 9.40 45.15 4.57
4018 4366 5.677319 AGATTACTAAGTGGCTAAGTGCA 57.323 39.130 0.00 0.00 45.15 4.57
4019 4367 6.986904 AAAGATTACTAAGTGGCTAAGTGC 57.013 37.500 0.00 0.00 41.94 4.40
4042 4390 4.820716 TGCTAACTAAAGTGCCCGTAAAAA 59.179 37.500 0.00 0.00 0.00 1.94
4043 4391 4.387598 TGCTAACTAAAGTGCCCGTAAAA 58.612 39.130 0.00 0.00 0.00 1.52
4044 4392 4.005487 TGCTAACTAAAGTGCCCGTAAA 57.995 40.909 0.00 0.00 0.00 2.01
4045 4393 3.681593 TGCTAACTAAAGTGCCCGTAA 57.318 42.857 0.00 0.00 0.00 3.18
4046 4394 3.681593 TTGCTAACTAAAGTGCCCGTA 57.318 42.857 0.00 0.00 0.00 4.02
4047 4395 2.554370 TTGCTAACTAAAGTGCCCGT 57.446 45.000 0.00 0.00 0.00 5.28
4048 4396 3.063997 CAGATTGCTAACTAAAGTGCCCG 59.936 47.826 0.00 0.00 0.00 6.13
4049 4397 4.261801 TCAGATTGCTAACTAAAGTGCCC 58.738 43.478 0.00 0.00 0.00 5.36
4050 4398 5.355350 ACATCAGATTGCTAACTAAAGTGCC 59.645 40.000 0.00 0.00 0.00 5.01
4051 4399 6.428385 ACATCAGATTGCTAACTAAAGTGC 57.572 37.500 0.00 0.00 0.00 4.40
4077 4425 7.781693 AGATCTGGGCATCTACAATGTATTTTT 59.218 33.333 0.00 0.00 30.84 1.94
4078 4426 7.230108 CAGATCTGGGCATCTACAATGTATTTT 59.770 37.037 15.38 0.00 31.47 1.82
4079 4427 6.713903 CAGATCTGGGCATCTACAATGTATTT 59.286 38.462 15.38 0.00 31.47 1.40
4080 4428 6.183361 ACAGATCTGGGCATCTACAATGTATT 60.183 38.462 26.08 0.00 31.47 1.89
4081 4429 5.309020 ACAGATCTGGGCATCTACAATGTAT 59.691 40.000 26.08 0.00 31.47 2.29
4082 4430 4.655649 ACAGATCTGGGCATCTACAATGTA 59.344 41.667 26.08 0.00 31.47 2.29
4083 4431 3.457380 ACAGATCTGGGCATCTACAATGT 59.543 43.478 26.08 0.00 31.47 2.71
4084 4432 4.063689 GACAGATCTGGGCATCTACAATG 58.936 47.826 26.08 0.00 31.47 2.82
4085 4433 3.072184 GGACAGATCTGGGCATCTACAAT 59.928 47.826 26.08 0.56 31.47 2.71
4086 4434 2.435805 GGACAGATCTGGGCATCTACAA 59.564 50.000 26.08 0.00 31.47 2.41
4087 4435 2.042464 GGACAGATCTGGGCATCTACA 58.958 52.381 26.08 0.00 31.47 2.74
4088 4436 2.042464 TGGACAGATCTGGGCATCTAC 58.958 52.381 26.08 5.87 31.47 2.59
4089 4437 2.477104 TGGACAGATCTGGGCATCTA 57.523 50.000 26.08 10.04 31.47 1.98
4090 4438 1.588239 TTGGACAGATCTGGGCATCT 58.412 50.000 26.08 4.23 33.00 2.90
4091 4439 2.653234 ATTGGACAGATCTGGGCATC 57.347 50.000 26.08 14.17 34.19 3.91
4092 4440 3.461085 ACTTATTGGACAGATCTGGGCAT 59.539 43.478 26.08 14.19 34.19 4.40
4093 4441 2.846206 ACTTATTGGACAGATCTGGGCA 59.154 45.455 26.08 8.02 34.19 5.36
4094 4442 3.567478 ACTTATTGGACAGATCTGGGC 57.433 47.619 26.08 16.90 34.19 5.36
4095 4443 9.799106 AATATTTACTTATTGGACAGATCTGGG 57.201 33.333 26.08 2.90 34.19 4.45
4156 4504 4.881019 TCATCCCTTTGATAGCTCTAGC 57.119 45.455 0.00 0.00 42.49 3.42
4157 4505 6.602410 TGATCATCCCTTTGATAGCTCTAG 57.398 41.667 0.00 0.00 36.48 2.43
4158 4506 6.327365 TGTTGATCATCCCTTTGATAGCTCTA 59.673 38.462 0.00 0.00 36.48 2.43
4159 4507 5.131642 TGTTGATCATCCCTTTGATAGCTCT 59.868 40.000 0.00 0.00 36.48 4.09
4160 4508 5.371526 TGTTGATCATCCCTTTGATAGCTC 58.628 41.667 0.00 0.00 36.48 4.09
4161 4509 5.131642 TCTGTTGATCATCCCTTTGATAGCT 59.868 40.000 0.00 0.00 36.48 3.32
4162 4510 5.371526 TCTGTTGATCATCCCTTTGATAGC 58.628 41.667 0.00 0.00 36.48 2.97
4163 4511 5.469421 GCTCTGTTGATCATCCCTTTGATAG 59.531 44.000 0.00 0.00 36.48 2.08
4164 4512 5.371526 GCTCTGTTGATCATCCCTTTGATA 58.628 41.667 0.00 0.00 36.48 2.15
4165 4513 4.205587 GCTCTGTTGATCATCCCTTTGAT 58.794 43.478 0.00 0.00 39.04 2.57
4166 4514 3.614092 GCTCTGTTGATCATCCCTTTGA 58.386 45.455 0.00 0.00 0.00 2.69
4167 4515 2.353889 CGCTCTGTTGATCATCCCTTTG 59.646 50.000 0.00 0.00 0.00 2.77
4168 4516 2.026822 ACGCTCTGTTGATCATCCCTTT 60.027 45.455 0.00 0.00 0.00 3.11
4169 4517 1.556911 ACGCTCTGTTGATCATCCCTT 59.443 47.619 0.00 0.00 0.00 3.95
4170 4518 1.134580 CACGCTCTGTTGATCATCCCT 60.135 52.381 0.00 0.00 0.00 4.20
4171 4519 1.134699 TCACGCTCTGTTGATCATCCC 60.135 52.381 0.00 0.00 0.00 3.85
4172 4520 2.299993 TCACGCTCTGTTGATCATCC 57.700 50.000 0.00 0.00 0.00 3.51
4173 4521 2.606725 CCTTCACGCTCTGTTGATCATC 59.393 50.000 0.00 0.00 0.00 2.92
4174 4522 2.234661 TCCTTCACGCTCTGTTGATCAT 59.765 45.455 0.00 0.00 0.00 2.45
4175 4523 1.618343 TCCTTCACGCTCTGTTGATCA 59.382 47.619 0.00 0.00 0.00 2.92
4176 4524 2.370281 TCCTTCACGCTCTGTTGATC 57.630 50.000 0.00 0.00 0.00 2.92
4177 4525 2.234661 TGATCCTTCACGCTCTGTTGAT 59.765 45.455 0.00 0.00 0.00 2.57
4178 4526 1.618343 TGATCCTTCACGCTCTGTTGA 59.382 47.619 0.00 0.00 0.00 3.18
4179 4527 1.998315 CTGATCCTTCACGCTCTGTTG 59.002 52.381 0.00 0.00 0.00 3.33
4180 4528 1.620819 ACTGATCCTTCACGCTCTGTT 59.379 47.619 0.00 0.00 0.00 3.16
4181 4529 1.067283 CACTGATCCTTCACGCTCTGT 60.067 52.381 0.00 0.00 0.00 3.41
4182 4530 1.203287 TCACTGATCCTTCACGCTCTG 59.797 52.381 0.00 0.00 0.00 3.35
4183 4531 1.550327 TCACTGATCCTTCACGCTCT 58.450 50.000 0.00 0.00 0.00 4.09
4184 4532 2.200067 CATCACTGATCCTTCACGCTC 58.800 52.381 0.00 0.00 0.00 5.03
4185 4533 1.552337 ACATCACTGATCCTTCACGCT 59.448 47.619 0.00 0.00 0.00 5.07
4186 4534 2.015736 ACATCACTGATCCTTCACGC 57.984 50.000 0.00 0.00 0.00 5.34
4187 4535 4.377839 AGTACATCACTGATCCTTCACG 57.622 45.455 0.00 0.00 35.62 4.35
4198 4546 1.064463 CCCCAATGGCAGTACATCACT 60.064 52.381 0.00 0.00 38.32 3.41
4199 4547 1.340991 ACCCCAATGGCAGTACATCAC 60.341 52.381 0.00 0.00 37.83 3.06
4200 4548 0.998928 ACCCCAATGGCAGTACATCA 59.001 50.000 0.00 0.00 37.83 3.07
4201 4549 2.024414 GAACCCCAATGGCAGTACATC 58.976 52.381 0.00 0.00 37.83 3.06
4202 4550 1.640670 AGAACCCCAATGGCAGTACAT 59.359 47.619 0.00 0.00 37.83 2.29
4203 4551 1.072266 AGAACCCCAATGGCAGTACA 58.928 50.000 0.00 0.00 37.83 2.90
4204 4552 2.215942 AAGAACCCCAATGGCAGTAC 57.784 50.000 0.00 0.00 37.83 2.73
4205 4553 3.117663 GGATAAGAACCCCAATGGCAGTA 60.118 47.826 0.00 0.00 37.83 2.74
4206 4554 2.358195 GGATAAGAACCCCAATGGCAGT 60.358 50.000 0.00 0.00 37.83 4.40
4207 4555 2.310538 GGATAAGAACCCCAATGGCAG 58.689 52.381 0.00 0.00 37.83 4.85
4208 4556 1.063266 GGGATAAGAACCCCAATGGCA 60.063 52.381 0.00 0.00 42.24 4.92
4209 4557 1.704641 GGGATAAGAACCCCAATGGC 58.295 55.000 0.00 0.00 42.24 4.40
4215 4563 4.251103 ACATTTCTGGGATAAGAACCCC 57.749 45.455 0.00 0.00 46.21 4.95
4216 4564 7.559897 TGATAAACATTTCTGGGATAAGAACCC 59.440 37.037 0.00 0.00 46.87 4.11
4217 4565 8.519799 TGATAAACATTTCTGGGATAAGAACC 57.480 34.615 0.00 0.00 35.92 3.62
4218 4566 9.956720 CATGATAAACATTTCTGGGATAAGAAC 57.043 33.333 0.00 0.00 35.92 3.01
4219 4567 9.135189 CCATGATAAACATTTCTGGGATAAGAA 57.865 33.333 0.00 0.00 37.07 2.52
4220 4568 8.281531 ACCATGATAAACATTTCTGGGATAAGA 58.718 33.333 0.00 0.00 37.07 2.10
4221 4569 8.355169 CACCATGATAAACATTTCTGGGATAAG 58.645 37.037 0.00 0.00 37.07 1.73
4222 4570 7.201902 GCACCATGATAAACATTTCTGGGATAA 60.202 37.037 0.00 0.00 37.07 1.75
4223 4571 6.265196 GCACCATGATAAACATTTCTGGGATA 59.735 38.462 0.00 0.00 37.07 2.59
4224 4572 5.069516 GCACCATGATAAACATTTCTGGGAT 59.930 40.000 0.00 0.00 37.07 3.85
4225 4573 4.402155 GCACCATGATAAACATTTCTGGGA 59.598 41.667 0.00 0.00 37.07 4.37
4226 4574 4.160065 TGCACCATGATAAACATTTCTGGG 59.840 41.667 0.00 0.00 37.07 4.45
4227 4575 5.327616 TGCACCATGATAAACATTTCTGG 57.672 39.130 0.00 0.00 37.07 3.86
4228 4576 7.262772 AGAATGCACCATGATAAACATTTCTG 58.737 34.615 0.00 0.00 37.07 3.02
4229 4577 7.414222 AGAATGCACCATGATAAACATTTCT 57.586 32.000 0.00 0.00 37.07 2.52
4230 4578 7.864379 CCTAGAATGCACCATGATAAACATTTC 59.136 37.037 0.00 0.00 37.07 2.17
4231 4579 7.342799 ACCTAGAATGCACCATGATAAACATTT 59.657 33.333 0.00 0.00 37.07 2.32
4232 4580 6.835488 ACCTAGAATGCACCATGATAAACATT 59.165 34.615 0.00 0.00 37.07 2.71
4233 4581 6.367983 ACCTAGAATGCACCATGATAAACAT 58.632 36.000 0.00 0.00 40.17 2.71
4234 4582 5.754782 ACCTAGAATGCACCATGATAAACA 58.245 37.500 0.00 0.00 0.00 2.83
4235 4583 5.239525 GGACCTAGAATGCACCATGATAAAC 59.760 44.000 0.00 0.00 0.00 2.01
4236 4584 5.376625 GGACCTAGAATGCACCATGATAAA 58.623 41.667 0.00 0.00 0.00 1.40
4237 4585 4.503123 CGGACCTAGAATGCACCATGATAA 60.503 45.833 0.00 0.00 0.00 1.75
4238 4586 3.006859 CGGACCTAGAATGCACCATGATA 59.993 47.826 0.00 0.00 0.00 2.15
4239 4587 2.224378 CGGACCTAGAATGCACCATGAT 60.224 50.000 0.00 0.00 0.00 2.45
4240 4588 1.138859 CGGACCTAGAATGCACCATGA 59.861 52.381 0.00 0.00 0.00 3.07
4241 4589 1.586422 CGGACCTAGAATGCACCATG 58.414 55.000 0.00 0.00 0.00 3.66
4242 4590 0.179045 GCGGACCTAGAATGCACCAT 60.179 55.000 0.00 0.00 0.00 3.55
4243 4591 1.220749 GCGGACCTAGAATGCACCA 59.779 57.895 0.00 0.00 0.00 4.17
4244 4592 0.811616 CAGCGGACCTAGAATGCACC 60.812 60.000 0.00 0.00 0.00 5.01
4245 4593 1.432270 GCAGCGGACCTAGAATGCAC 61.432 60.000 0.00 0.00 33.92 4.57
4246 4594 1.153369 GCAGCGGACCTAGAATGCA 60.153 57.895 0.00 0.00 33.92 3.96
4247 4595 2.240500 CGCAGCGGACCTAGAATGC 61.241 63.158 7.00 0.00 0.00 3.56
4248 4596 4.018609 CGCAGCGGACCTAGAATG 57.981 61.111 7.00 0.00 0.00 2.67
4267 4615 9.918630 CATCTAAAATTTGTCTTCACAAGGATT 57.081 29.630 0.00 0.00 43.54 3.01
4268 4616 9.300681 TCATCTAAAATTTGTCTTCACAAGGAT 57.699 29.630 0.00 0.00 43.54 3.24
4269 4617 8.690203 TCATCTAAAATTTGTCTTCACAAGGA 57.310 30.769 0.00 0.00 43.54 3.36
4270 4618 9.748708 TTTCATCTAAAATTTGTCTTCACAAGG 57.251 29.630 0.00 0.00 43.54 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.