Multiple sequence alignment - TraesCS2A01G529800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G529800 chr2A 100.000 3045 0 0 1 3045 747876264 747873220 0 5624
1 TraesCS2A01G529800 chr2A 93.676 3052 184 7 1 3045 747748065 747745016 0 4558
2 TraesCS2A01G529800 chr2A 93.676 3052 184 7 1 3045 747820992 747817943 0 4558
3 TraesCS2A01G529800 chr2A 93.547 3053 187 7 1 3045 747784823 747781773 0 4538
4 TraesCS2A01G529800 chr2A 93.152 3052 197 10 1 3045 747731710 747728664 0 4468
5 TraesCS2A01G529800 chr2A 93.089 3053 197 12 1 3045 747741223 747738177 0 4457
6 TraesCS2A01G529800 chr2A 93.021 3052 200 11 1 3045 747738034 747734989 0 4444
7 TraesCS2A01G529800 chr2A 92.925 3053 201 12 1 3045 747778494 747775449 0 4427
8 TraesCS2A01G529800 chr2A 92.829 3054 203 13 1 3045 747814663 747811617 0 4412
9 TraesCS2A01G529800 chr2A 92.733 3055 204 15 1 3045 747722247 747719201 0 4396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G529800 chr2A 747873220 747876264 3044 True 5624.00 5624 100.0000 1 3045 1 chr2A.!!$R2 3044
1 TraesCS2A01G529800 chr2A 747811617 747820992 9375 True 4485.00 4558 93.2525 1 3045 2 chr2A.!!$R5 3044
2 TraesCS2A01G529800 chr2A 747775449 747784823 9374 True 4482.50 4538 93.2360 1 3045 2 chr2A.!!$R4 3044
3 TraesCS2A01G529800 chr2A 747728664 747748065 19401 True 4481.75 4558 93.2345 1 3045 4 chr2A.!!$R3 3044
4 TraesCS2A01G529800 chr2A 747719201 747722247 3046 True 4396.00 4396 92.7330 1 3045 1 chr2A.!!$R1 3044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 14165 0.667184 GCCCAACAATTTCACAGGCG 60.667 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2569 15743 0.108615 AGAGTCGGATTGTTGGCTCG 60.109 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.460906 GTATACCTAGAAGATTGTTTTACTCCG 57.539 37.037 0.00 0.00 0.00 4.63
150 151 1.069906 GCGACTTTGTGTGGTAAGCAG 60.070 52.381 0.00 0.00 0.00 4.24
191 192 9.863845 CCAATAAACAGTTAAATTTCGGGTATT 57.136 29.630 0.00 0.00 0.00 1.89
211 212 7.255451 GGGTATTCACATTCACTCAGTTTTTGA 60.255 37.037 0.00 0.00 0.00 2.69
400 401 1.051008 TCTGCTGACCAAGAGCAAGA 58.949 50.000 0.00 0.00 45.65 3.02
607 608 6.039270 TCAAACAGTTTGATCTTGTTAGTGGG 59.961 38.462 22.53 0.00 44.21 4.61
810 811 2.805671 TCACTTGTACCTTCAATGCACG 59.194 45.455 0.00 0.00 0.00 5.34
814 815 4.097286 ACTTGTACCTTCAATGCACGTTTT 59.903 37.500 0.00 0.00 0.00 2.43
943 944 4.164796 TCTTTAGCATGAGACATGATGGGT 59.835 41.667 14.65 0.00 0.00 4.51
950 951 5.506815 GCATGAGACATGATGGGTTGTAATG 60.507 44.000 14.65 0.00 0.00 1.90
981 14149 1.867166 GAGTACTAATCGCCTTGCCC 58.133 55.000 0.00 0.00 0.00 5.36
997 14165 0.667184 GCCCAACAATTTCACAGGCG 60.667 55.000 0.00 0.00 0.00 5.52
1076 14244 3.499537 CACAGAACAAGCAAGCATCTACA 59.500 43.478 0.00 0.00 0.00 2.74
1084 14252 3.424703 AGCAAGCATCTACAACAATGGT 58.575 40.909 0.00 0.00 35.24 3.55
1133 14301 1.556911 TCTTGTGGCCTCCTTCTCATC 59.443 52.381 3.32 0.00 0.00 2.92
1239 14407 2.186826 GCTGGACGGTGCAAGTTGT 61.187 57.895 3.39 0.00 0.00 3.32
1241 14409 1.785041 CTGGACGGTGCAAGTTGTGG 61.785 60.000 3.39 0.00 0.00 4.17
1268 14436 0.937304 TTGCTCTCAAAGTGTGCGTC 59.063 50.000 0.00 0.00 0.00 5.19
1298 14466 4.002797 GGCAAGATGAGCCCGTTT 57.997 55.556 0.00 0.00 46.50 3.60
1302 14470 1.945819 GCAAGATGAGCCCGTTTGAGA 60.946 52.381 0.00 0.00 0.00 3.27
1361 14529 1.663695 CCGTGGACTGTTTGTGTTCT 58.336 50.000 0.00 0.00 0.00 3.01
1378 14546 3.535629 CTGCCTTCACCCGAGCACA 62.536 63.158 0.00 0.00 0.00 4.57
1382 14550 2.359850 TTCACCCGAGCACATGCC 60.360 61.111 0.00 0.00 43.38 4.40
1412 14580 7.229306 GTCTATGGCAATGTCCTTGATGAAATA 59.771 37.037 0.00 0.00 36.97 1.40
1417 14585 7.043565 GGCAATGTCCTTGATGAAATAAATGT 58.956 34.615 0.00 0.00 36.97 2.71
1419 14587 7.043854 GCAATGTCCTTGATGAAATAAATGTCG 60.044 37.037 0.00 0.00 36.97 4.35
1478 14646 1.198713 TCTGTCTCCAAGGATCTGGC 58.801 55.000 0.00 0.00 36.32 4.85
1482 14650 1.134551 GTCTCCAAGGATCTGGCTGAC 60.135 57.143 0.00 9.47 36.32 3.51
1522 14690 0.594602 GCTCAATGTGTGCAAGCAGA 59.405 50.000 0.00 0.00 36.90 4.26
1707 14875 5.104562 TCCGCGACATCTACTTGTATTAG 57.895 43.478 8.23 0.00 0.00 1.73
1716 14884 9.587772 GACATCTACTTGTATTAGTTGTGATGT 57.412 33.333 0.00 0.00 40.60 3.06
1741 14909 0.033781 TGGCATGCCTTTTTGTCTGC 59.966 50.000 35.53 6.75 36.94 4.26
1753 14921 1.674359 TTGTCTGCGTGGTCATGTTT 58.326 45.000 0.00 0.00 0.00 2.83
1756 14924 2.546368 TGTCTGCGTGGTCATGTTTTAC 59.454 45.455 0.00 0.00 0.00 2.01
1758 14926 1.529438 CTGCGTGGTCATGTTTTACGT 59.471 47.619 13.00 0.00 37.12 3.57
1772 14940 7.817478 TCATGTTTTACGTATATGCCTCCTATG 59.183 37.037 0.00 0.00 0.00 2.23
1786 14954 4.466015 GCCTCCTATGTGAAAATTTTCCCA 59.534 41.667 24.51 20.71 36.36 4.37
1788 14956 6.633856 CCTCCTATGTGAAAATTTTCCCAAG 58.366 40.000 24.51 17.96 36.36 3.61
1801 14969 1.464734 TCCCAAGTCGTCTAGCTCAG 58.535 55.000 0.00 0.00 0.00 3.35
1813 14981 5.864474 TCGTCTAGCTCAGAAGTTCATTTTC 59.136 40.000 5.50 0.00 34.17 2.29
1832 15000 6.862944 TTTTCAAGCTTTTTACTCACAACG 57.137 33.333 0.00 0.00 0.00 4.10
1859 15027 1.337167 GCCAAGTGAATTTGTGAGGGC 60.337 52.381 0.00 0.00 0.00 5.19
1893 15063 2.034878 CCATCACAGGCTCTAGTGCTA 58.965 52.381 15.85 0.00 35.76 3.49
1932 15102 3.194116 TGGCATCAAAAAGCTCAAGGATC 59.806 43.478 0.00 0.00 0.00 3.36
1946 15116 3.012518 CAAGGATCTGAATGACCACACC 58.987 50.000 0.00 0.00 0.00 4.16
1963 15133 0.179018 ACCTGCCCTATTTCATCGGC 60.179 55.000 0.00 0.00 41.99 5.54
1998 15168 3.433274 TGCGTTTCAAAAATGTTGTTGCA 59.567 34.783 0.00 0.00 0.00 4.08
2002 15172 6.302615 CGTTTCAAAAATGTTGTTGCAAGAA 58.697 32.000 4.66 4.66 0.00 2.52
2016 15186 5.221402 TGTTGCAAGAAATGGCATTAGTTCA 60.221 36.000 14.05 5.68 40.17 3.18
2029 15199 4.326826 CATTAGTTCACTCAGAAAGGCCA 58.673 43.478 5.01 0.00 38.13 5.36
2030 15200 4.431416 TTAGTTCACTCAGAAAGGCCAA 57.569 40.909 5.01 0.00 38.13 4.52
2033 15203 4.985538 AGTTCACTCAGAAAGGCCAATTA 58.014 39.130 5.01 0.00 38.13 1.40
2034 15204 4.762251 AGTTCACTCAGAAAGGCCAATTAC 59.238 41.667 5.01 0.00 38.13 1.89
2045 15215 5.450818 AAGGCCAATTACCATCTCTGTAA 57.549 39.130 5.01 0.00 33.09 2.41
2046 15216 5.653255 AGGCCAATTACCATCTCTGTAAT 57.347 39.130 5.01 0.00 39.86 1.89
2048 15218 7.149202 AGGCCAATTACCATCTCTGTAATAA 57.851 36.000 5.01 0.00 37.80 1.40
2051 15221 8.135529 GGCCAATTACCATCTCTGTAATAAAAC 58.864 37.037 0.00 0.00 37.80 2.43
2059 15229 7.065803 ACCATCTCTGTAATAAAACAATCACCG 59.934 37.037 0.00 0.00 0.00 4.94
2085 15255 2.191400 ACATGGTGACTAGCATCCACT 58.809 47.619 0.00 0.00 42.79 4.00
2100 15272 4.452455 GCATCCACTCCTAATCCAAATACG 59.548 45.833 0.00 0.00 0.00 3.06
2102 15274 3.139077 CCACTCCTAATCCAAATACGCC 58.861 50.000 0.00 0.00 0.00 5.68
2107 15279 3.259876 TCCTAATCCAAATACGCCGCTAT 59.740 43.478 0.00 0.00 0.00 2.97
2207 15380 3.758300 CGCCATCTAATGACAAAACACC 58.242 45.455 0.00 0.00 0.00 4.16
2234 15407 3.686726 GTGCAGATGGTCTTAGGAAACTG 59.313 47.826 0.00 0.00 43.88 3.16
2258 15431 5.348418 CTCATATGGAGGTTTAACATGCG 57.652 43.478 2.13 0.00 40.13 4.73
2283 15457 7.201478 CGAAAAGGCATCAAAAAGTTTGTTGTA 60.201 33.333 11.43 0.00 0.00 2.41
2293 15467 8.307483 TCAAAAAGTTTGTTGTATCACCAAAGA 58.693 29.630 0.98 0.00 0.00 2.52
2294 15468 9.097257 CAAAAAGTTTGTTGTATCACCAAAGAT 57.903 29.630 0.00 0.00 0.00 2.40
2296 15470 9.965824 AAAAGTTTGTTGTATCACCAAAGATAG 57.034 29.630 0.00 0.00 31.50 2.08
2311 15485 6.014327 ACCAAAGATAGGATTGCATGTTTTGT 60.014 34.615 0.00 0.00 0.00 2.83
2359 15533 7.845037 TGAGAGAGATGATCACAGTTGTATTT 58.155 34.615 0.00 0.00 0.00 1.40
2362 15536 8.484575 AGAGAGATGATCACAGTTGTATTTCAT 58.515 33.333 0.00 4.44 0.00 2.57
2393 15567 7.095910 TCAACAACAATGTGACAAACTTGAAT 58.904 30.769 4.58 0.00 40.46 2.57
2414 15588 7.210174 TGAATCATTGTCTATAGAAGGAACCG 58.790 38.462 3.40 0.00 0.00 4.44
2418 15592 3.093814 TGTCTATAGAAGGAACCGCACA 58.906 45.455 3.40 0.00 0.00 4.57
2439 15613 2.203394 CCATGAAGCCCCCGATGG 60.203 66.667 0.00 0.00 0.00 3.51
2483 15657 2.564771 GATGTCGAGCATCCAATGGAA 58.435 47.619 5.89 0.00 46.26 3.53
2492 15666 2.158871 GCATCCAATGGAATGTGCCAAT 60.159 45.455 13.80 0.00 42.16 3.16
2535 15709 4.481930 TCCAACGTAACTCTGCAAAATG 57.518 40.909 0.00 0.00 0.00 2.32
2542 15716 1.238439 ACTCTGCAAAATGACCACCG 58.762 50.000 0.00 0.00 0.00 4.94
2552 15726 0.973632 ATGACCACCGCTGACACTTA 59.026 50.000 0.00 0.00 0.00 2.24
2557 15731 2.565834 ACCACCGCTGACACTTACTATT 59.434 45.455 0.00 0.00 0.00 1.73
2568 15742 8.135529 GCTGACACTTACTATTTTTCCAAAACT 58.864 33.333 0.00 0.00 0.00 2.66
2569 15743 9.665264 CTGACACTTACTATTTTTCCAAAACTC 57.335 33.333 0.00 0.00 0.00 3.01
2594 15770 2.093500 CCAACAATCCGACTCTCCATCA 60.093 50.000 0.00 0.00 0.00 3.07
2672 15848 5.579047 TGGGGATCACATCAAAGTTTATGT 58.421 37.500 0.00 0.00 36.78 2.29
2746 15922 2.006888 TGATGTTGCCGCTTAGTTAGC 58.993 47.619 0.00 0.00 46.83 3.09
2777 15953 6.808008 ATATCAATGCATTTCTAAGACGGG 57.192 37.500 9.83 0.00 0.00 5.28
2781 15957 2.917933 TGCATTTCTAAGACGGGGATG 58.082 47.619 0.00 0.00 0.00 3.51
2802 15978 6.017357 GGATGGGGTCGATAAATTTAGTTGAC 60.017 42.308 14.31 14.31 0.00 3.18
2809 15985 8.179615 GGTCGATAAATTTAGTTGACGGAAATT 58.820 33.333 15.39 4.83 34.94 1.82
2831 16007 6.995511 TTGTAAGTATGCAACAATAGGGTC 57.004 37.500 0.00 0.00 0.00 4.46
2832 16008 5.433526 TGTAAGTATGCAACAATAGGGTCC 58.566 41.667 0.00 0.00 0.00 4.46
2848 16024 2.498885 GGGTCCGTTCTAGGCTTAAAGA 59.501 50.000 0.00 0.00 0.00 2.52
2852 16028 3.773119 TCCGTTCTAGGCTTAAAGACCAT 59.227 43.478 0.00 0.00 0.00 3.55
2854 16030 3.797256 CGTTCTAGGCTTAAAGACCATCG 59.203 47.826 0.00 0.00 0.00 3.84
2888 16064 5.979517 GCAGGGCAAAATAATATTGACAGAC 59.020 40.000 0.00 0.00 37.54 3.51
2890 16066 7.013274 GCAGGGCAAAATAATATTGACAGACTA 59.987 37.037 0.00 0.00 37.54 2.59
2913 16089 8.609483 ACTAATTTCACTCAGCATATGGGATAT 58.391 33.333 4.56 0.00 31.77 1.63
2917 16093 5.261216 TCACTCAGCATATGGGATATACGA 58.739 41.667 4.56 0.00 31.77 3.43
2924 16100 5.932303 AGCATATGGGATATACGACAAACAC 59.068 40.000 4.56 0.00 0.00 3.32
2928 16104 2.785477 GGGATATACGACAAACACGACG 59.215 50.000 0.00 0.00 34.70 5.12
2946 16122 1.670811 ACGGTGCACACTGAAAAAGAG 59.329 47.619 20.43 0.00 40.06 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.042335 ACATCGGAGTAAAACAATCTTCTAGG 58.958 38.462 0.00 0.00 0.00 3.02
43 44 9.678260 ATGGCAAAGAATATCCTAGATTACATC 57.322 33.333 0.00 0.00 0.00 3.06
97 98 7.464358 CATGAGAACTTTTACAAACCGGATAG 58.536 38.462 9.46 0.00 0.00 2.08
150 151 6.151691 TGTTTATTGGTGTAGTCGTACTCAC 58.848 40.000 0.00 0.00 0.00 3.51
191 192 5.006649 CGAGTCAAAAACTGAGTGAATGTGA 59.993 40.000 0.00 0.00 37.87 3.58
211 212 0.249911 GTGTCCTTGGAAGCACGAGT 60.250 55.000 0.00 0.00 0.00 4.18
438 439 5.171476 CAAGTCGCCTTATCTTCTTGAAGA 58.829 41.667 14.41 14.41 35.69 2.87
607 608 4.269363 GGTAGCAAACACATCCATACGTAC 59.731 45.833 0.00 0.00 0.00 3.67
766 767 8.398665 GTGAGGAATATCCACAATTACAAAGTC 58.601 37.037 0.00 0.00 38.82 3.01
770 771 7.888021 ACAAGTGAGGAATATCCACAATTACAA 59.112 33.333 8.72 0.00 41.96 2.41
773 774 7.990886 GGTACAAGTGAGGAATATCCACAATTA 59.009 37.037 8.72 0.00 41.96 1.40
774 775 6.828785 GGTACAAGTGAGGAATATCCACAATT 59.171 38.462 4.13 4.13 43.99 2.32
776 777 5.487488 AGGTACAAGTGAGGAATATCCACAA 59.513 40.000 0.00 0.00 38.82 3.33
783 784 5.880332 GCATTGAAGGTACAAGTGAGGAATA 59.120 40.000 0.00 0.00 33.22 1.75
893 894 2.871096 ATTTTAGGCAGTCCACGGAA 57.129 45.000 0.00 0.00 33.74 4.30
925 926 2.025605 ACAACCCATCATGTCTCATGCT 60.026 45.455 5.03 0.00 0.00 3.79
943 944 2.338500 TCGCGCATGTACACATTACAA 58.662 42.857 8.75 0.00 33.61 2.41
950 951 2.463553 TAGTACTCGCGCATGTACAC 57.536 50.000 29.08 15.04 40.84 2.90
981 14149 1.608590 AGGACGCCTGTGAAATTGTTG 59.391 47.619 0.00 0.00 29.57 3.33
1084 14252 1.040339 GGCTTTGGTGTTGGTGGTCA 61.040 55.000 0.00 0.00 0.00 4.02
1133 14301 2.560542 AGACATAGCTAGGAGGATTGCG 59.439 50.000 13.23 0.00 0.00 4.85
1175 14343 1.534476 TGGTGAAGGCGGTAGGTCA 60.534 57.895 0.00 0.00 0.00 4.02
1222 14390 1.648720 CACAACTTGCACCGTCCAG 59.351 57.895 0.00 0.00 0.00 3.86
1239 14407 4.219070 CACTTTGAGAGCAATTTCATCCCA 59.781 41.667 0.00 0.00 33.25 4.37
1241 14409 5.159209 CACACTTTGAGAGCAATTTCATCC 58.841 41.667 0.00 0.00 33.25 3.51
1268 14436 3.254014 CTTGCCCAAGCGGACGTTG 62.254 63.158 0.00 0.00 44.31 4.10
1298 14466 0.250467 GGCAGCACTGGTTCTTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
1302 14470 2.281761 CCGGCAGCACTGGTTCTT 60.282 61.111 0.00 0.00 40.35 2.52
1345 14513 1.064758 AGGCAGAACACAAACAGTCCA 60.065 47.619 0.00 0.00 0.00 4.02
1361 14529 2.894257 ATGTGCTCGGGTGAAGGCA 61.894 57.895 0.00 0.00 0.00 4.75
1382 14550 1.134401 AGGACATTGCCATAGACACGG 60.134 52.381 0.00 0.00 0.00 4.94
1412 14580 4.060038 ACAGACTGTGAGAACGACATTT 57.940 40.909 7.47 0.00 0.00 2.32
1452 14620 3.703001 TCCTTGGAGACAGAATTGGTC 57.297 47.619 0.00 0.00 44.54 4.02
1478 14646 0.387202 CGGTGAGGCTAGATGGTCAG 59.613 60.000 0.00 0.00 0.00 3.51
1482 14650 1.000283 GTCATCGGTGAGGCTAGATGG 60.000 57.143 0.00 4.55 40.43 3.51
1596 14764 4.689612 AACCAGTACATGCTAGTATGGG 57.310 45.455 22.64 16.30 32.09 4.00
1707 14875 3.247442 CATGCCATGAACACATCACAAC 58.753 45.455 0.00 0.00 41.93 3.32
1716 14884 2.104451 ACAAAAAGGCATGCCATGAACA 59.896 40.909 37.18 0.00 38.92 3.18
1741 14909 5.428770 GCATATACGTAAAACATGACCACG 58.571 41.667 0.00 6.05 38.52 4.94
1753 14921 6.904463 TTCACATAGGAGGCATATACGTAA 57.096 37.500 0.00 0.00 0.00 3.18
1756 14924 7.672983 AATTTTCACATAGGAGGCATATACG 57.327 36.000 0.00 0.00 0.00 3.06
1758 14926 9.077885 GGAAAATTTTCACATAGGAGGCATATA 57.922 33.333 27.53 0.00 38.92 0.86
1772 14940 5.183014 AGACGACTTGGGAAAATTTTCAC 57.817 39.130 27.53 25.64 40.96 3.18
1786 14954 3.821600 TGAACTTCTGAGCTAGACGACTT 59.178 43.478 0.00 0.00 34.43 3.01
1788 14956 3.833545 TGAACTTCTGAGCTAGACGAC 57.166 47.619 0.00 0.00 34.43 4.34
1801 14969 9.301153 TGAGTAAAAAGCTTGAAAATGAACTTC 57.699 29.630 0.00 0.00 0.00 3.01
1813 14981 4.904154 GCTACGTTGTGAGTAAAAAGCTTG 59.096 41.667 0.00 0.00 0.00 4.01
1832 15000 3.983344 CACAAATTCACTTGGCAAGCTAC 59.017 43.478 26.45 0.00 0.00 3.58
1859 15027 4.697352 CCTGTGATGGGAAAGTTTCTACTG 59.303 45.833 15.05 9.99 34.01 2.74
1932 15102 0.962356 GGGCAGGTGTGGTCATTCAG 60.962 60.000 0.00 0.00 0.00 3.02
1946 15116 0.249868 TCGCCGATGAAATAGGGCAG 60.250 55.000 1.55 0.00 43.96 4.85
1979 15149 8.577110 CATTTCTTGCAACAACATTTTTGAAAC 58.423 29.630 0.00 0.00 0.00 2.78
1980 15150 7.754027 CCATTTCTTGCAACAACATTTTTGAAA 59.246 29.630 0.00 0.16 0.00 2.69
1981 15151 7.249147 CCATTTCTTGCAACAACATTTTTGAA 58.751 30.769 0.00 0.00 0.00 2.69
1998 15168 6.240894 TCTGAGTGAACTAATGCCATTTCTT 58.759 36.000 0.00 0.00 0.00 2.52
2002 15172 5.416952 CCTTTCTGAGTGAACTAATGCCATT 59.583 40.000 0.00 0.00 33.88 3.16
2016 15186 3.806949 TGGTAATTGGCCTTTCTGAGT 57.193 42.857 3.32 0.00 0.00 3.41
2033 15203 7.065803 CGGTGATTGTTTTATTACAGAGATGGT 59.934 37.037 0.00 0.00 0.00 3.55
2034 15204 7.279981 TCGGTGATTGTTTTATTACAGAGATGG 59.720 37.037 0.00 0.00 0.00 3.51
2045 15215 6.644592 CCATGTTGTTTCGGTGATTGTTTTAT 59.355 34.615 0.00 0.00 0.00 1.40
2046 15216 5.980116 CCATGTTGTTTCGGTGATTGTTTTA 59.020 36.000 0.00 0.00 0.00 1.52
2048 15218 4.142049 ACCATGTTGTTTCGGTGATTGTTT 60.142 37.500 0.00 0.00 0.00 2.83
2051 15221 3.641437 ACCATGTTGTTTCGGTGATTG 57.359 42.857 0.00 0.00 0.00 2.67
2059 15229 4.142600 GGATGCTAGTCACCATGTTGTTTC 60.143 45.833 0.00 0.00 0.00 2.78
2085 15255 1.414919 AGCGGCGTATTTGGATTAGGA 59.585 47.619 9.37 0.00 0.00 2.94
2143 15316 1.961793 TTCTGCCGCTAGTTTGTGTT 58.038 45.000 0.00 0.00 0.00 3.32
2156 15329 4.082354 AGAGTGCTCAAATCATTTTCTGCC 60.082 41.667 1.82 0.00 0.00 4.85
2258 15431 6.841119 ACAACAAACTTTTTGATGCCTTTTC 58.159 32.000 5.67 0.00 0.00 2.29
2283 15457 5.452255 ACATGCAATCCTATCTTTGGTGAT 58.548 37.500 0.00 0.00 0.00 3.06
2293 15467 5.909477 CATGGACAAAACATGCAATCCTAT 58.091 37.500 0.00 0.00 39.23 2.57
2294 15468 5.327616 CATGGACAAAACATGCAATCCTA 57.672 39.130 0.00 0.00 39.23 2.94
2359 15533 8.164058 TGTCACATTGTTGTTGAAGAATATGA 57.836 30.769 6.98 0.00 28.56 2.15
2362 15536 8.465999 AGTTTGTCACATTGTTGTTGAAGAATA 58.534 29.630 0.00 0.00 32.34 1.75
2369 15543 6.702972 TTCAAGTTTGTCACATTGTTGTTG 57.297 33.333 0.00 0.00 32.34 3.33
2393 15567 4.404394 TGCGGTTCCTTCTATAGACAATGA 59.596 41.667 0.67 0.00 0.00 2.57
2409 15583 2.477863 GCTTCATGGTTATGTGCGGTTC 60.478 50.000 0.00 0.00 35.73 3.62
2414 15588 0.746659 GGGGCTTCATGGTTATGTGC 59.253 55.000 0.00 0.00 35.73 4.57
2418 15592 1.149101 ATCGGGGGCTTCATGGTTAT 58.851 50.000 0.00 0.00 0.00 1.89
2439 15613 2.665519 GCACGATGTGATGGTTTGTCAC 60.666 50.000 0.24 0.00 44.77 3.67
2446 15620 3.103447 CATCTAGCACGATGTGATGGT 57.897 47.619 0.24 0.00 36.80 3.55
2483 15657 4.889409 CCTAGGTATGAAACATTGGCACAT 59.111 41.667 0.00 0.00 39.30 3.21
2492 15666 9.442062 TTGGATCTTATACCTAGGTATGAAACA 57.558 33.333 35.24 24.62 40.98 2.83
2535 15709 0.317479 AGTAAGTGTCAGCGGTGGTC 59.683 55.000 15.67 9.09 0.00 4.02
2542 15716 8.135529 AGTTTTGGAAAAATAGTAAGTGTCAGC 58.864 33.333 0.00 0.00 0.00 4.26
2552 15726 4.825085 TGGCTCGAGTTTTGGAAAAATAGT 59.175 37.500 15.13 0.00 0.00 2.12
2557 15731 2.755655 TGTTGGCTCGAGTTTTGGAAAA 59.244 40.909 15.13 0.00 0.00 2.29
2568 15742 0.108804 GAGTCGGATTGTTGGCTCGA 60.109 55.000 0.00 0.00 0.00 4.04
2569 15743 0.108615 AGAGTCGGATTGTTGGCTCG 60.109 55.000 0.00 0.00 0.00 5.03
2648 15824 6.197168 ACATAAACTTTGATGTGATCCCCAT 58.803 36.000 0.00 0.00 34.98 4.00
2659 15835 6.884836 GGTGTCCTAGGAACATAAACTTTGAT 59.115 38.462 14.65 0.00 0.00 2.57
2672 15848 0.606604 GCGACTTGGTGTCCTAGGAA 59.393 55.000 14.65 0.93 42.49 3.36
2693 15869 1.071385 GAGTGCCGGAATGAGGATGAT 59.929 52.381 5.05 0.00 0.00 2.45
2760 15936 3.480470 CATCCCCGTCTTAGAAATGCAT 58.520 45.455 0.00 0.00 0.00 3.96
2762 15938 2.222027 CCATCCCCGTCTTAGAAATGC 58.778 52.381 0.00 0.00 0.00 3.56
2767 15943 0.398098 GACCCCATCCCCGTCTTAGA 60.398 60.000 0.00 0.00 0.00 2.10
2774 15950 0.690762 ATTTATCGACCCCATCCCCG 59.309 55.000 0.00 0.00 0.00 5.73
2777 15953 6.017357 GTCAACTAAATTTATCGACCCCATCC 60.017 42.308 0.00 0.00 0.00 3.51
2781 15957 4.271776 CCGTCAACTAAATTTATCGACCCC 59.728 45.833 0.00 0.00 0.00 4.95
2802 15978 7.643764 CCTATTGTTGCATACTTACAATTTCCG 59.356 37.037 16.54 6.02 41.36 4.30
2809 15985 5.433526 GGACCCTATTGTTGCATACTTACA 58.566 41.667 0.00 0.00 0.00 2.41
2831 16007 3.604875 TGGTCTTTAAGCCTAGAACGG 57.395 47.619 0.00 0.00 30.57 4.44
2832 16008 3.797256 CGATGGTCTTTAAGCCTAGAACG 59.203 47.826 0.00 0.00 30.57 3.95
2864 16040 5.979517 GTCTGTCAATATTATTTTGCCCTGC 59.020 40.000 0.00 0.00 0.00 4.85
2890 16066 7.550551 CGTATATCCCATATGCTGAGTGAAATT 59.449 37.037 0.00 0.00 0.00 1.82
2913 16089 1.208009 GCACCGTCGTGTTTGTCGTA 61.208 55.000 0.00 0.00 42.39 3.43
2917 16093 1.742140 TGTGCACCGTCGTGTTTGT 60.742 52.632 15.69 0.00 42.39 2.83
2924 16100 0.375454 TTTTTCAGTGTGCACCGTCG 59.625 50.000 15.69 0.00 0.00 5.12
2928 16104 4.574599 AATCTCTTTTTCAGTGTGCACC 57.425 40.909 15.69 5.76 0.00 5.01
2946 16122 7.661847 TCCTTCTCCTCAAAACACTAGAAAATC 59.338 37.037 0.00 0.00 0.00 2.17
2992 16168 9.638176 ATTGTAGAAATTCATCTCCTGCTATTT 57.362 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.