Multiple sequence alignment - TraesCS2A01G528700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G528700 chr2A 100.000 6950 0 0 1 6950 747616773 747609824 0.000000e+00 12835.0
1 TraesCS2A01G528700 chr2A 83.133 166 15 9 6215 6369 79315267 79315104 9.400000e-29 139.0
2 TraesCS2A01G528700 chr2A 81.765 170 18 9 6216 6374 127198319 127198486 5.660000e-26 130.0
3 TraesCS2A01G528700 chr2B 93.731 3653 149 30 2570 6176 753095647 753092029 0.000000e+00 5404.0
4 TraesCS2A01G528700 chr2B 94.429 1454 60 11 1119 2569 753097112 753095677 0.000000e+00 2217.0
5 TraesCS2A01G528700 chr2B 85.701 1091 78 32 1 1036 753098210 753097143 0.000000e+00 1079.0
6 TraesCS2A01G528700 chr2B 93.500 400 14 7 6551 6950 753091880 753091493 1.000000e-162 584.0
7 TraesCS2A01G528700 chr2B 86.911 191 18 5 1 186 127018592 127018404 2.540000e-49 207.0
8 TraesCS2A01G528700 chr2B 87.117 163 9 7 6218 6369 76912299 76912138 2.580000e-39 174.0
9 TraesCS2A01G528700 chr2B 81.208 149 19 6 3073 3219 707170284 707170425 2.050000e-20 111.0
10 TraesCS2A01G528700 chr2D 94.337 2419 94 16 3823 6211 617393474 617391069 0.000000e+00 3668.0
11 TraesCS2A01G528700 chr2D 88.089 2653 157 76 1 2569 617397297 617394720 0.000000e+00 3001.0
12 TraesCS2A01G528700 chr2D 95.543 1234 42 7 2570 3798 617394690 617393465 0.000000e+00 1962.0
13 TraesCS2A01G528700 chr2D 87.368 190 17 5 3 187 415155033 415154846 1.960000e-50 211.0
14 TraesCS2A01G528700 chr2D 88.690 168 17 2 6376 6542 617391050 617390884 3.290000e-48 204.0
15 TraesCS2A01G528700 chr2D 90.991 111 8 1 6794 6904 617390825 617390717 1.560000e-31 148.0
16 TraesCS2A01G528700 chr2D 96.364 55 2 0 6608 6662 617390880 617390826 2.670000e-14 91.6
17 TraesCS2A01G528700 chr3B 92.344 627 45 2 1740 2363 152226288 152225662 0.000000e+00 889.0
18 TraesCS2A01G528700 chr3B 82.721 1007 104 33 612 1588 152227574 152226608 0.000000e+00 832.0
19 TraesCS2A01G528700 chr3B 89.041 146 11 4 1599 1742 152226516 152226374 7.160000e-40 176.0
20 TraesCS2A01G528700 chr3B 83.230 161 19 4 6217 6370 809117898 809118057 2.610000e-29 141.0
21 TraesCS2A01G528700 chr3B 84.672 137 16 2 2726 2862 616087430 616087299 1.570000e-26 132.0
22 TraesCS2A01G528700 chr3B 79.191 173 24 10 6214 6376 814152714 814152544 7.370000e-20 110.0
23 TraesCS2A01G528700 chr4B 90.615 618 55 2 1749 2363 157289487 157288870 0.000000e+00 817.0
24 TraesCS2A01G528700 chr4B 85.354 635 78 10 1111 1742 157290204 157289582 1.630000e-180 643.0
25 TraesCS2A01G528700 chr4B 82.635 167 16 8 6215 6370 574446758 574446594 1.220000e-27 135.0
26 TraesCS2A01G528700 chr4B 90.000 100 9 1 6267 6365 126324626 126324725 2.030000e-25 128.0
27 TraesCS2A01G528700 chr1B 91.698 265 21 1 6378 6641 577179306 577179570 3.960000e-97 366.0
28 TraesCS2A01G528700 chr1B 78.151 595 94 21 2730 3306 591393895 591394471 5.160000e-91 346.0
29 TraesCS2A01G528700 chr1B 88.636 176 12 8 2 170 651391992 651391818 2.540000e-49 207.0
30 TraesCS2A01G528700 chr3D 89.744 195 16 4 1 192 577326677 577326484 5.380000e-61 246.0
31 TraesCS2A01G528700 chr3D 85.106 188 13 10 6202 6376 528611511 528611696 1.990000e-40 178.0
32 TraesCS2A01G528700 chr3D 83.974 156 19 4 6214 6366 307237218 307237066 2.020000e-30 145.0
33 TraesCS2A01G528700 chr1D 88.205 195 19 4 1 192 42524062 42524255 5.420000e-56 230.0
34 TraesCS2A01G528700 chr7A 87.245 196 16 6 3 191 162158611 162158804 1.520000e-51 215.0
35 TraesCS2A01G528700 chr1A 86.432 199 18 6 1 192 419295428 419295232 7.060000e-50 209.0
36 TraesCS2A01G528700 chr6A 86.528 193 20 5 1 188 92121922 92122113 2.540000e-49 207.0
37 TraesCS2A01G528700 chr6A 87.879 66 5 3 6218 6281 57571769 57571705 2.690000e-09 75.0
38 TraesCS2A01G528700 chr7B 85.235 149 17 5 3073 3219 23002668 23002523 1.560000e-31 148.0
39 TraesCS2A01G528700 chr7B 88.991 109 9 3 6267 6374 592542511 592542405 1.570000e-26 132.0
40 TraesCS2A01G528700 chr7B 79.191 173 28 8 3410 3577 645663231 645663062 5.700000e-21 113.0
41 TraesCS2A01G528700 chr6B 82.530 166 15 9 6218 6370 583446146 583445982 4.370000e-27 134.0
42 TraesCS2A01G528700 chr5D 82.143 168 17 10 6214 6370 351556035 351556200 1.570000e-26 132.0
43 TraesCS2A01G528700 chr5B 81.928 166 18 7 6215 6369 526591370 526591534 5.660000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G528700 chr2A 747609824 747616773 6949 True 12835.000000 12835 100.000000 1 6950 1 chr2A.!!$R2 6949
1 TraesCS2A01G528700 chr2B 753091493 753098210 6717 True 2321.000000 5404 91.840250 1 6950 4 chr2B.!!$R3 6949
2 TraesCS2A01G528700 chr2D 617390717 617397297 6580 True 1512.433333 3668 92.335667 1 6904 6 chr2D.!!$R2 6903
3 TraesCS2A01G528700 chr3B 152225662 152227574 1912 True 632.333333 889 88.035333 612 2363 3 chr3B.!!$R3 1751
4 TraesCS2A01G528700 chr4B 157288870 157290204 1334 True 730.000000 817 87.984500 1111 2363 2 chr4B.!!$R2 1252
5 TraesCS2A01G528700 chr1B 591393895 591394471 576 False 346.000000 346 78.151000 2730 3306 1 chr1B.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1087 0.246635 GGAGACGAGTGCTTTGGCTA 59.753 55.000 0.00 0.00 39.59 3.93 F
1205 1341 0.393944 AGCCACATGATGCTGTCCTG 60.394 55.000 11.90 0.00 36.23 3.86 F
1206 1342 0.679002 GCCACATGATGCTGTCCTGT 60.679 55.000 0.00 0.00 36.30 4.00 F
1289 1425 0.743345 GGATACTTGTGGCCACCGAC 60.743 60.000 32.62 16.73 0.00 4.79 F
3314 3676 1.273048 TGGCATTGCTGGTGTGAATTC 59.727 47.619 8.82 0.00 0.00 2.17 F
4933 5311 1.227674 CCGCACCTCCTTATGCTCC 60.228 63.158 0.00 0.00 39.79 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2660 3001 1.680735 TGCTCGTTGATGGCACTTTTT 59.319 42.857 0.00 0.00 0.00 1.94 R
3192 3546 1.205655 TCAAGAACAGAGGCCTGATCG 59.794 52.381 12.00 0.00 44.14 3.69 R
3298 3652 5.670792 ATTGATGAATTCACACCAGCAAT 57.329 34.783 11.07 6.03 40.64 3.56 R
3483 3845 8.545420 TCATTATTTTTCGCGGATTACTTCTAC 58.455 33.333 6.13 0.00 0.00 2.59 R
5121 5514 0.252239 TGGAAGCTCCACCTCTAGCA 60.252 55.000 1.25 0.00 42.67 3.49 R
6188 6584 0.320050 TGCCATAAGCTCACACGACA 59.680 50.000 0.00 0.00 44.23 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 4.869297 CAGAAACCAACAGCAAAACATCAA 59.131 37.500 0.00 0.00 0.00 2.57
107 108 2.808244 ACCAACAGCAAAACATCAACG 58.192 42.857 0.00 0.00 0.00 4.10
114 115 1.394697 CAAAACATCAACGACACGCC 58.605 50.000 0.00 0.00 0.00 5.68
177 181 0.824109 CTTACCATCTCACCAGCCGA 59.176 55.000 0.00 0.00 0.00 5.54
179 183 0.535335 TACCATCTCACCAGCCGAAC 59.465 55.000 0.00 0.00 0.00 3.95
183 200 1.617947 ATCTCACCAGCCGAACCCTC 61.618 60.000 0.00 0.00 0.00 4.30
258 294 2.434359 CGCAGGTCGGGAAGGAAC 60.434 66.667 0.00 0.00 33.78 3.62
277 313 0.247576 CGAACACTCTCGTATCGCGT 60.248 55.000 5.77 0.00 42.13 6.01
278 314 1.005662 CGAACACTCTCGTATCGCGTA 60.006 52.381 5.77 0.00 42.13 4.42
280 316 0.935898 ACACTCTCGTATCGCGTAGG 59.064 55.000 5.77 4.09 42.13 3.18
291 327 4.893601 GCGTAGGAGGAAGCCGGC 62.894 72.222 21.89 21.89 0.00 6.13
327 371 3.048602 CTATGGGCTACGGACGGG 58.951 66.667 0.00 0.00 0.00 5.28
370 416 3.782443 CGGCCCAGGTGGACCTAC 61.782 72.222 0.00 0.00 46.65 3.18
371 417 3.408853 GGCCCAGGTGGACCTACC 61.409 72.222 0.00 5.26 46.65 3.18
372 418 3.408853 GCCCAGGTGGACCTACCC 61.409 72.222 0.00 0.00 46.65 3.69
374 420 2.124085 CCAGGTGGACCTACCCCA 59.876 66.667 0.00 0.00 46.65 4.96
375 421 1.307866 CCAGGTGGACCTACCCCAT 60.308 63.158 0.00 0.00 46.65 4.00
388 457 2.190578 CCCATGGGCCGAAGACTC 59.809 66.667 20.41 0.00 0.00 3.36
390 459 2.579201 CATGGGCCGAAGACTCGT 59.421 61.111 0.00 0.00 43.87 4.18
550 630 4.767255 GTCCCTGGTCAGCAGCCG 62.767 72.222 0.00 0.00 0.00 5.52
629 721 0.251354 AGACTAGCGTCCACCGACTA 59.749 55.000 0.00 0.00 41.16 2.59
702 800 1.228894 AGGTGGCGACAGGAGAAGA 60.229 57.895 0.00 0.00 44.46 2.87
714 812 3.269178 CAGGAGAAGAGAAGGTGATTGC 58.731 50.000 0.00 0.00 0.00 3.56
715 813 2.238395 AGGAGAAGAGAAGGTGATTGCC 59.762 50.000 0.00 0.00 0.00 4.52
735 833 0.523757 GTGCTTCTCTCGCCGTAGAC 60.524 60.000 0.00 0.00 0.00 2.59
810 912 2.574018 GGTTGGCTCTGGTTTGGGC 61.574 63.158 0.00 0.00 0.00 5.36
817 919 2.518349 CTGGTTTGGGCGTGTGGT 60.518 61.111 0.00 0.00 0.00 4.16
919 1028 0.666274 TGTCGCTTGTCAGCTAACCG 60.666 55.000 0.00 0.00 44.85 4.44
939 1048 1.400494 GTGGTTGTGTGTCTGTTGTCC 59.600 52.381 0.00 0.00 0.00 4.02
978 1087 0.246635 GGAGACGAGTGCTTTGGCTA 59.753 55.000 0.00 0.00 39.59 3.93
1098 1233 6.741448 TTTTTGCAATTAACTACTCGTTGC 57.259 33.333 0.00 0.00 43.93 4.17
1102 1237 6.344572 TGCAATTAACTACTCGTTGCATAG 57.655 37.500 6.95 0.00 46.98 2.23
1103 1238 6.103330 TGCAATTAACTACTCGTTGCATAGA 58.897 36.000 6.95 0.00 46.98 1.98
1104 1239 6.255670 TGCAATTAACTACTCGTTGCATAGAG 59.744 38.462 14.95 14.95 46.98 2.43
1105 1240 6.475727 GCAATTAACTACTCGTTGCATAGAGA 59.524 38.462 21.18 7.90 43.33 3.10
1106 1241 7.515371 GCAATTAACTACTCGTTGCATAGAGAC 60.515 40.741 21.18 0.91 43.33 3.36
1107 1242 6.505044 TTAACTACTCGTTGCATAGAGACA 57.495 37.500 21.18 10.29 37.87 3.41
1108 1243 5.386958 AACTACTCGTTGCATAGAGACAA 57.613 39.130 21.18 8.67 37.87 3.18
1109 1244 4.734917 ACTACTCGTTGCATAGAGACAAC 58.265 43.478 21.18 0.00 42.15 3.32
1114 1249 5.646793 ACTCGTTGCATAGAGACAACTACTA 59.353 40.000 21.18 0.00 43.14 1.82
1130 1265 5.738118 ACTACTACTCGTTGCATAGAGAC 57.262 43.478 21.18 0.91 37.87 3.36
1204 1340 1.996900 AGCCACATGATGCTGTCCT 59.003 52.632 11.90 0.00 36.23 3.85
1205 1341 0.393944 AGCCACATGATGCTGTCCTG 60.394 55.000 11.90 0.00 36.23 3.86
1206 1342 0.679002 GCCACATGATGCTGTCCTGT 60.679 55.000 0.00 0.00 36.30 4.00
1207 1343 1.376543 CCACATGATGCTGTCCTGTC 58.623 55.000 0.00 0.00 34.02 3.51
1289 1425 0.743345 GGATACTTGTGGCCACCGAC 60.743 60.000 32.62 16.73 0.00 4.79
1550 1686 2.258726 AAGCCTTCGCGTTCAACCC 61.259 57.895 5.77 0.00 41.18 4.11
1689 1906 7.814107 TCAAAGCTCAACATTCCATTTCATAAC 59.186 33.333 0.00 0.00 0.00 1.89
1710 1927 4.855340 ACGGTCCTCATATTTTGGTGATT 58.145 39.130 0.00 0.00 0.00 2.57
1747 2053 4.371624 TCAAGAAGGACAACCACATGAT 57.628 40.909 0.00 0.00 38.94 2.45
1848 2154 4.512944 AGATGCGTGCAGTTATATTCTTGG 59.487 41.667 0.00 0.00 0.00 3.61
1849 2155 2.354510 TGCGTGCAGTTATATTCTTGGC 59.645 45.455 0.00 0.00 0.00 4.52
2242 2553 2.039480 TCCCAGGCAATATCATGAGCTC 59.961 50.000 6.82 6.82 0.00 4.09
2438 2749 2.193536 GCAACGCAGTCACCCCTTT 61.194 57.895 0.00 0.00 45.00 3.11
2518 2829 3.833070 GACCTGAAAGTCAAGAGGGTCTA 59.167 47.826 0.00 0.00 35.99 2.59
2527 2838 6.274322 AGTCAAGAGGGTCTATCAGTATCT 57.726 41.667 0.00 0.00 0.00 1.98
2603 2943 8.773033 ATTTATTTCAGTCCTTAATCCTGCAT 57.227 30.769 0.00 0.00 0.00 3.96
2660 3001 5.943416 CACATACAGGATAAAGACAAACCCA 59.057 40.000 0.00 0.00 0.00 4.51
2675 3016 2.908688 ACCCAAAAAGTGCCATCAAC 57.091 45.000 0.00 0.00 0.00 3.18
2946 3294 9.533253 CATGTTCTTTTGTTAGAAATCAAGGTT 57.467 29.630 0.00 0.00 36.01 3.50
3011 3360 7.013274 TGGTGTTCAGAGTTTTCTTATTCCTTG 59.987 37.037 0.00 0.00 0.00 3.61
3022 3371 9.521503 GTTTTCTTATTCCTTGCATATTCCTTC 57.478 33.333 0.00 0.00 0.00 3.46
3131 3485 9.416794 ACTTCATGCTTATATAAGTGATTCTCG 57.583 33.333 20.89 8.18 35.75 4.04
3192 3546 2.094182 TGAAGCAGATGTCGACCCTAAC 60.094 50.000 14.12 6.19 0.00 2.34
3314 3676 1.273048 TGGCATTGCTGGTGTGAATTC 59.727 47.619 8.82 0.00 0.00 2.17
3320 3682 5.416083 CATTGCTGGTGTGAATTCATCAAT 58.584 37.500 12.12 10.98 40.50 2.57
3386 3748 6.833839 TGTTAAATGGAAACGATTTACCTCG 58.166 36.000 0.00 0.00 44.14 4.63
3623 3985 3.072468 TCGGCAAGGTACCTCGGG 61.072 66.667 16.64 9.31 0.00 5.14
3786 4148 6.016276 ACAGGAGGTATTTTGCTGTGTTTAAG 60.016 38.462 0.00 0.00 44.16 1.85
4234 4607 2.033372 TGCATTGTGATAGGCATTGGG 58.967 47.619 0.00 0.00 0.00 4.12
4287 4660 2.030274 GGCTATTCGGCCGCATTAAAAT 60.030 45.455 23.51 16.36 42.82 1.82
4573 4947 5.648178 TGATTTGCTACCGTTCTGTAGTA 57.352 39.130 0.00 0.00 40.29 1.82
4576 4950 6.533723 TGATTTGCTACCGTTCTGTAGTATTG 59.466 38.462 0.00 0.00 40.29 1.90
4586 4960 6.295123 CCGTTCTGTAGTATTGGGCATATAGT 60.295 42.308 0.00 0.00 0.00 2.12
4675 5049 6.088616 CGAAATTGCAGAAGAAACTGAATTCC 59.911 38.462 2.27 0.00 39.94 3.01
4765 5139 5.163591 ACAAACCCTTGTACTGTAGTTTTGC 60.164 40.000 0.00 0.00 44.14 3.68
4834 5212 8.302515 TCTAGGAACGTGTAAAGGAAATATCT 57.697 34.615 0.00 0.00 0.00 1.98
4837 5215 8.302515 AGGAACGTGTAAAGGAAATATCTCTA 57.697 34.615 0.00 0.00 0.00 2.43
4861 5239 1.298014 CAAGGGAGACACAGGGCTC 59.702 63.158 0.00 0.00 0.00 4.70
4894 5272 6.867816 GCACTCAAAATTTGGTGATCACATAA 59.132 34.615 26.47 18.82 35.32 1.90
4932 5310 1.889573 GCCGCACCTCCTTATGCTC 60.890 63.158 0.00 0.00 39.79 4.26
4933 5311 1.227674 CCGCACCTCCTTATGCTCC 60.228 63.158 0.00 0.00 39.79 4.70
5014 5407 2.562738 TCTGTAGCAGCTGAAAGTAGCA 59.437 45.455 20.43 4.76 46.07 3.49
5076 5469 2.571653 TCTTGGTACCAGATCAACCAGG 59.428 50.000 15.65 10.51 43.82 4.45
5094 5487 3.798202 CAGGTCTACAGCTGGATTTACC 58.202 50.000 19.93 16.77 43.38 2.85
5121 5514 3.133721 CCTCTAAAGATGCTACTGGTGCT 59.866 47.826 0.00 0.00 0.00 4.40
5346 5742 4.563580 GGGAACTCTAATCAGTTGTCTGCA 60.564 45.833 0.00 0.00 41.10 4.41
5367 5763 8.296713 TCTGCAATTTACCTATGTTGAAGTTTC 58.703 33.333 0.00 0.00 30.77 2.78
5390 5786 3.493129 TGAATGTCGTAGAACTTGTGTGC 59.507 43.478 0.00 0.00 39.69 4.57
5420 5816 3.996363 TCAACATTGATCTGACCGAACAG 59.004 43.478 0.00 0.00 34.38 3.16
5472 5868 0.787084 AGGAGGTGGACTCTTCCTCA 59.213 55.000 16.25 0.00 46.61 3.86
5487 5883 1.588403 CTCAGATGAGGACGCAGCG 60.588 63.158 14.82 14.82 38.48 5.18
5497 5893 0.801067 GGACGCAGCGAACGAAGTAT 60.801 55.000 24.65 0.00 45.00 2.12
5534 5930 2.983402 TCAGTACGTCTGTTTCCTCG 57.017 50.000 12.62 0.00 43.97 4.63
5545 5941 6.072508 ACGTCTGTTTCCTCGTTATACTTACA 60.073 38.462 0.00 0.00 32.62 2.41
5549 5945 6.985117 TGTTTCCTCGTTATACTTACACAGT 58.015 36.000 0.00 0.00 39.87 3.55
5551 5947 6.822667 TTCCTCGTTATACTTACACAGTCA 57.177 37.500 0.00 0.00 36.88 3.41
5571 5967 9.412460 ACAGTCATTATACATCCATGACAAATT 57.588 29.630 14.10 0.00 46.30 1.82
5645 6041 0.959553 TCGAATGCTCGTAGGATCCC 59.040 55.000 8.55 0.00 45.62 3.85
5840 6236 0.797249 CTCGGGTAAGCGAAGTCACG 60.797 60.000 0.00 0.00 0.00 4.35
5853 6249 2.693797 AGTCACGTCGTAATTGTCGT 57.306 45.000 0.00 0.00 36.99 4.34
5857 6253 1.123576 CACGTCGTAATTGTCGTGTGG 59.876 52.381 0.00 3.76 45.26 4.17
5873 6269 3.443976 GTGTGGGAATGTTGTTTGTGTC 58.556 45.455 0.00 0.00 0.00 3.67
5892 6288 7.463469 TGTGTCGTGTTACATGATTGATATC 57.537 36.000 10.64 0.00 31.77 1.63
5971 6367 5.695363 TGATTCTCATTCTGATGAAGCGATC 59.305 40.000 0.00 0.00 41.55 3.69
6010 6406 5.295292 CAGGGTTAGAATAGCTGATGTGTTG 59.705 44.000 0.00 0.00 0.00 3.33
6011 6407 5.045578 AGGGTTAGAATAGCTGATGTGTTGT 60.046 40.000 0.00 0.00 0.00 3.32
6012 6408 5.648092 GGGTTAGAATAGCTGATGTGTTGTT 59.352 40.000 0.00 0.00 0.00 2.83
6019 6415 2.161855 GCTGATGTGTTGTTCCCATCA 58.838 47.619 0.00 0.00 41.85 3.07
6042 6438 3.286751 GCTGGCGGTCTGTTTGCA 61.287 61.111 0.00 0.00 0.00 4.08
6046 6442 2.639286 GCGGTCTGTTTGCAGTGG 59.361 61.111 0.00 0.00 43.05 4.00
6149 6545 3.442625 GCCAGTTTACCATTGGGAACTAC 59.557 47.826 19.90 9.58 33.60 2.73
6150 6546 4.658063 CCAGTTTACCATTGGGAACTACA 58.342 43.478 19.90 0.00 33.60 2.74
6151 6547 4.700213 CCAGTTTACCATTGGGAACTACAG 59.300 45.833 19.90 11.81 33.60 2.74
6152 6548 5.313712 CAGTTTACCATTGGGAACTACAGT 58.686 41.667 19.90 0.22 33.60 3.55
6153 6549 6.469410 CAGTTTACCATTGGGAACTACAGTA 58.531 40.000 19.90 0.00 33.60 2.74
6163 6559 6.340962 TGGGAACTACAGTATTATCATCGG 57.659 41.667 0.00 0.00 0.00 4.18
6177 6573 9.025020 GTATTATCATCGGCATATACTCTGTTG 57.975 37.037 0.00 0.00 0.00 3.33
6188 6584 1.638529 ACTCTGTTGCAGGCTAGTCT 58.361 50.000 0.00 0.00 31.51 3.24
6198 6594 1.135546 CAGGCTAGTCTGTCGTGTGAG 60.136 57.143 16.50 0.00 0.00 3.51
6199 6595 0.456995 GGCTAGTCTGTCGTGTGAGC 60.457 60.000 0.00 0.00 0.00 4.26
6200 6596 0.523966 GCTAGTCTGTCGTGTGAGCT 59.476 55.000 0.00 0.00 0.00 4.09
6201 6597 1.068194 GCTAGTCTGTCGTGTGAGCTT 60.068 52.381 0.00 0.00 0.00 3.74
6202 6598 2.161808 GCTAGTCTGTCGTGTGAGCTTA 59.838 50.000 0.00 0.00 0.00 3.09
6203 6599 3.181495 GCTAGTCTGTCGTGTGAGCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
6204 6600 3.223423 AGTCTGTCGTGTGAGCTTATG 57.777 47.619 0.00 0.00 0.00 1.90
6206 6602 1.002366 CTGTCGTGTGAGCTTATGGC 58.998 55.000 0.00 0.00 42.19 4.40
6207 6603 0.320050 TGTCGTGTGAGCTTATGGCA 59.680 50.000 0.00 0.00 44.79 4.92
6208 6604 1.066215 TGTCGTGTGAGCTTATGGCAT 60.066 47.619 4.88 4.88 44.79 4.40
6209 6605 1.594862 GTCGTGTGAGCTTATGGCATC 59.405 52.381 1.65 0.00 44.79 3.91
6211 6607 1.473965 CGTGTGAGCTTATGGCATCCT 60.474 52.381 1.65 0.00 44.79 3.24
6212 6608 2.216898 GTGTGAGCTTATGGCATCCTC 58.783 52.381 1.65 9.35 44.79 3.71
6213 6609 2.121948 TGTGAGCTTATGGCATCCTCT 58.878 47.619 1.65 0.00 44.79 3.69
6215 6611 3.711190 TGTGAGCTTATGGCATCCTCTAA 59.289 43.478 1.65 0.00 44.79 2.10
6216 6612 4.202295 TGTGAGCTTATGGCATCCTCTAAG 60.202 45.833 1.65 2.60 44.79 2.18
6217 6613 3.969976 TGAGCTTATGGCATCCTCTAAGT 59.030 43.478 1.65 0.00 44.79 2.24
6218 6614 5.011125 GTGAGCTTATGGCATCCTCTAAGTA 59.989 44.000 1.65 0.00 44.79 2.24
6219 6615 5.011125 TGAGCTTATGGCATCCTCTAAGTAC 59.989 44.000 1.65 1.59 44.79 2.73
6220 6616 5.151454 AGCTTATGGCATCCTCTAAGTACT 58.849 41.667 1.65 0.00 44.79 2.73
6221 6617 5.245075 AGCTTATGGCATCCTCTAAGTACTC 59.755 44.000 1.65 0.00 44.79 2.59
6222 6618 5.567823 GCTTATGGCATCCTCTAAGTACTCC 60.568 48.000 1.65 0.00 41.35 3.85
6223 6619 2.679082 TGGCATCCTCTAAGTACTCCC 58.321 52.381 0.00 0.00 0.00 4.30
6225 6621 2.894765 GGCATCCTCTAAGTACTCCCTC 59.105 54.545 0.00 0.00 0.00 4.30
6226 6622 2.894765 GCATCCTCTAAGTACTCCCTCC 59.105 54.545 0.00 0.00 0.00 4.30
6228 6624 2.203584 TCCTCTAAGTACTCCCTCCGT 58.796 52.381 0.00 0.00 0.00 4.69
6229 6625 2.579860 TCCTCTAAGTACTCCCTCCGTT 59.420 50.000 0.00 0.00 0.00 4.44
6230 6626 3.011032 TCCTCTAAGTACTCCCTCCGTTT 59.989 47.826 0.00 0.00 0.00 3.60
6231 6627 3.380954 CCTCTAAGTACTCCCTCCGTTTC 59.619 52.174 0.00 0.00 0.00 2.78
6232 6628 4.271661 CTCTAAGTACTCCCTCCGTTTCT 58.728 47.826 0.00 0.00 0.00 2.52
6233 6629 5.435291 CTCTAAGTACTCCCTCCGTTTCTA 58.565 45.833 0.00 0.00 0.00 2.10
6234 6630 5.819991 TCTAAGTACTCCCTCCGTTTCTAA 58.180 41.667 0.00 0.00 0.00 2.10
6235 6631 6.248433 TCTAAGTACTCCCTCCGTTTCTAAA 58.752 40.000 0.00 0.00 0.00 1.85
6236 6632 6.894103 TCTAAGTACTCCCTCCGTTTCTAAAT 59.106 38.462 0.00 0.00 0.00 1.40
6237 6633 8.055181 TCTAAGTACTCCCTCCGTTTCTAAATA 58.945 37.037 0.00 0.00 0.00 1.40
6238 6634 7.672122 AAGTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
6239 6635 8.773033 AAGTACTCCCTCCGTTTCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
6240 6636 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
6241 6637 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
6242 6638 7.063934 ACTCCCTCCGTTTCTAAATATAAGG 57.936 40.000 0.00 0.00 0.00 2.69
6243 6639 5.861727 TCCCTCCGTTTCTAAATATAAGGC 58.138 41.667 0.00 0.00 0.00 4.35
6244 6640 5.605488 TCCCTCCGTTTCTAAATATAAGGCT 59.395 40.000 0.00 0.00 0.00 4.58
6245 6641 6.100714 TCCCTCCGTTTCTAAATATAAGGCTT 59.899 38.462 4.58 4.58 0.00 4.35
6246 6642 6.771267 CCCTCCGTTTCTAAATATAAGGCTTT 59.229 38.462 4.45 0.00 0.00 3.51
6247 6643 7.284716 CCCTCCGTTTCTAAATATAAGGCTTTT 59.715 37.037 4.45 0.00 0.00 2.27
6248 6644 8.683615 CCTCCGTTTCTAAATATAAGGCTTTTT 58.316 33.333 4.45 2.60 0.00 1.94
6299 6695 8.993424 AGATGTATTTTAGGGTGTAGATTCACT 58.007 33.333 0.00 0.00 38.28 3.41
6300 6696 9.262358 GATGTATTTTAGGGTGTAGATTCACTC 57.738 37.037 0.00 0.00 38.92 3.51
6301 6697 8.141298 TGTATTTTAGGGTGTAGATTCACTCA 57.859 34.615 0.00 0.00 40.86 3.41
6302 6698 8.768397 TGTATTTTAGGGTGTAGATTCACTCAT 58.232 33.333 0.00 0.00 40.86 2.90
6303 6699 9.614792 GTATTTTAGGGTGTAGATTCACTCATT 57.385 33.333 0.00 0.00 40.86 2.57
6305 6701 8.934023 TTTTAGGGTGTAGATTCACTCATTTT 57.066 30.769 0.00 0.00 40.86 1.82
6306 6702 7.921786 TTAGGGTGTAGATTCACTCATTTTG 57.078 36.000 0.00 0.00 40.86 2.44
6307 6703 4.702131 AGGGTGTAGATTCACTCATTTTGC 59.298 41.667 0.00 0.00 40.86 3.68
6308 6704 4.142381 GGGTGTAGATTCACTCATTTTGCC 60.142 45.833 0.00 0.00 38.54 4.52
6309 6705 4.142381 GGTGTAGATTCACTCATTTTGCCC 60.142 45.833 0.00 0.00 38.28 5.36
6310 6706 4.016444 TGTAGATTCACTCATTTTGCCCC 58.984 43.478 0.00 0.00 0.00 5.80
6311 6707 2.094675 AGATTCACTCATTTTGCCCCG 58.905 47.619 0.00 0.00 0.00 5.73
6312 6708 1.818674 GATTCACTCATTTTGCCCCGT 59.181 47.619 0.00 0.00 0.00 5.28
6313 6709 2.570415 TTCACTCATTTTGCCCCGTA 57.430 45.000 0.00 0.00 0.00 4.02
6314 6710 2.799126 TCACTCATTTTGCCCCGTAT 57.201 45.000 0.00 0.00 0.00 3.06
6315 6711 2.364632 TCACTCATTTTGCCCCGTATG 58.635 47.619 0.00 0.00 0.00 2.39
6316 6712 2.091541 CACTCATTTTGCCCCGTATGT 58.908 47.619 0.00 0.00 0.00 2.29
6317 6713 3.055021 TCACTCATTTTGCCCCGTATGTA 60.055 43.478 0.00 0.00 0.00 2.29
6318 6714 3.312421 CACTCATTTTGCCCCGTATGTAG 59.688 47.826 0.00 0.00 0.00 2.74
6319 6715 2.290641 CTCATTTTGCCCCGTATGTAGC 59.709 50.000 0.00 0.00 0.00 3.58
6320 6716 1.336755 CATTTTGCCCCGTATGTAGCC 59.663 52.381 0.00 0.00 0.00 3.93
6321 6717 0.394625 TTTTGCCCCGTATGTAGCCC 60.395 55.000 0.00 0.00 0.00 5.19
6322 6718 1.563577 TTTGCCCCGTATGTAGCCCA 61.564 55.000 0.00 0.00 0.00 5.36
6323 6719 1.349542 TTGCCCCGTATGTAGCCCAT 61.350 55.000 0.00 0.00 37.58 4.00
6324 6720 0.472161 TGCCCCGTATGTAGCCCATA 60.472 55.000 0.00 0.00 34.86 2.74
6325 6721 0.909623 GCCCCGTATGTAGCCCATAT 59.090 55.000 0.00 0.00 38.29 1.78
6326 6722 1.280998 GCCCCGTATGTAGCCCATATT 59.719 52.381 0.00 0.00 38.29 1.28
6327 6723 2.939640 GCCCCGTATGTAGCCCATATTG 60.940 54.545 0.00 0.00 38.29 1.90
6328 6724 2.569853 CCCCGTATGTAGCCCATATTGA 59.430 50.000 0.00 0.00 38.29 2.57
6329 6725 3.008594 CCCCGTATGTAGCCCATATTGAA 59.991 47.826 0.00 0.00 38.29 2.69
6330 6726 4.505918 CCCCGTATGTAGCCCATATTGAAA 60.506 45.833 0.00 0.00 38.29 2.69
6331 6727 5.253330 CCCGTATGTAGCCCATATTGAAAT 58.747 41.667 0.00 0.00 38.29 2.17
6332 6728 5.354234 CCCGTATGTAGCCCATATTGAAATC 59.646 44.000 0.00 0.00 38.29 2.17
6333 6729 6.173339 CCGTATGTAGCCCATATTGAAATCT 58.827 40.000 0.00 0.00 38.29 2.40
6334 6730 7.327975 CCGTATGTAGCCCATATTGAAATCTA 58.672 38.462 0.00 0.00 38.29 1.98
6335 6731 7.987458 CCGTATGTAGCCCATATTGAAATCTAT 59.013 37.037 0.00 0.00 38.29 1.98
6342 6738 8.655935 AGCCCATATTGAAATCTATAAAAGGG 57.344 34.615 12.00 12.00 32.76 3.95
6343 6739 7.179160 AGCCCATATTGAAATCTATAAAAGGGC 59.821 37.037 22.51 22.51 42.71 5.19
6344 6740 7.179160 GCCCATATTGAAATCTATAAAAGGGCT 59.821 37.037 22.61 0.00 41.27 5.19
6345 6741 9.093458 CCCATATTGAAATCTATAAAAGGGCTT 57.907 33.333 0.00 0.00 0.00 4.35
6361 6757 8.753497 AAAAGGGCTTATATTTAGGAACAGAG 57.247 34.615 0.00 0.00 0.00 3.35
6362 6758 6.441088 AGGGCTTATATTTAGGAACAGAGG 57.559 41.667 0.00 0.00 0.00 3.69
6363 6759 5.310857 AGGGCTTATATTTAGGAACAGAGGG 59.689 44.000 0.00 0.00 0.00 4.30
6364 6760 5.309806 GGGCTTATATTTAGGAACAGAGGGA 59.690 44.000 0.00 0.00 0.00 4.20
6365 6761 6.183361 GGGCTTATATTTAGGAACAGAGGGAA 60.183 42.308 0.00 0.00 0.00 3.97
6366 6762 6.937465 GGCTTATATTTAGGAACAGAGGGAAG 59.063 42.308 0.00 0.00 0.00 3.46
6367 6763 7.420330 GGCTTATATTTAGGAACAGAGGGAAGT 60.420 40.741 0.00 0.00 0.00 3.01
6368 6764 8.648693 GCTTATATTTAGGAACAGAGGGAAGTA 58.351 37.037 0.00 0.00 0.00 2.24
6371 6767 6.893020 ATTTAGGAACAGAGGGAAGTATGT 57.107 37.500 0.00 0.00 0.00 2.29
6372 6768 6.697641 TTTAGGAACAGAGGGAAGTATGTT 57.302 37.500 0.00 0.00 38.53 2.71
6373 6769 7.801893 TTTAGGAACAGAGGGAAGTATGTTA 57.198 36.000 0.00 0.00 36.08 2.41
6374 6770 7.989947 TTAGGAACAGAGGGAAGTATGTTAT 57.010 36.000 0.00 0.00 36.08 1.89
6384 6780 7.238514 AGAGGGAAGTATGTTATAGGCATTGAT 59.761 37.037 0.00 0.00 0.00 2.57
6396 6792 4.298103 AGGCATTGATCTGAAACTGACT 57.702 40.909 0.00 0.00 0.00 3.41
6400 6796 5.877012 GGCATTGATCTGAAACTGACTAGAA 59.123 40.000 0.00 0.00 0.00 2.10
6401 6797 6.036953 GGCATTGATCTGAAACTGACTAGAAG 59.963 42.308 0.00 0.00 0.00 2.85
6413 6810 9.429359 GAAACTGACTAGAAGATCATTTTCTCA 57.571 33.333 12.71 0.00 39.52 3.27
6428 6825 9.643693 ATCATTTTCTCAAGCAATTACGAAAAT 57.356 25.926 0.00 0.00 39.98 1.82
6485 6882 8.279800 TCATACGTGCAAAACTATACATAATGC 58.720 33.333 0.00 0.00 0.00 3.56
6493 6890 9.743057 GCAAAACTATACATAATGCCACAATTA 57.257 29.630 0.00 0.00 0.00 1.40
6522 6919 9.410918 GAAACAGTTTCCTGGGAACCTCAAAAA 62.411 40.741 14.34 0.00 43.36 1.94
6542 6939 5.473066 AAAGCAAATTACAGAGGCATGTT 57.527 34.783 0.52 0.00 34.56 2.71
6543 6940 6.588719 AAAGCAAATTACAGAGGCATGTTA 57.411 33.333 0.52 0.00 34.56 2.41
6544 6941 5.824904 AGCAAATTACAGAGGCATGTTAG 57.175 39.130 0.52 0.00 34.56 2.34
6545 6942 4.641989 AGCAAATTACAGAGGCATGTTAGG 59.358 41.667 0.52 0.00 34.56 2.69
6546 6943 4.399303 GCAAATTACAGAGGCATGTTAGGT 59.601 41.667 0.52 0.00 34.56 3.08
6547 6944 5.449177 GCAAATTACAGAGGCATGTTAGGTC 60.449 44.000 0.52 0.00 34.56 3.85
6548 6945 5.435686 AATTACAGAGGCATGTTAGGTCA 57.564 39.130 0.52 0.00 34.56 4.02
6549 6946 2.770164 ACAGAGGCATGTTAGGTCAC 57.230 50.000 0.00 0.00 0.00 3.67
6550 6947 1.066858 ACAGAGGCATGTTAGGTCACG 60.067 52.381 0.00 0.00 0.00 4.35
6551 6948 1.066858 CAGAGGCATGTTAGGTCACGT 60.067 52.381 0.00 0.00 0.00 4.49
6552 6949 1.623811 AGAGGCATGTTAGGTCACGTT 59.376 47.619 0.00 0.00 0.00 3.99
6553 6950 2.038557 AGAGGCATGTTAGGTCACGTTT 59.961 45.455 0.00 0.00 0.00 3.60
6554 6951 3.259876 AGAGGCATGTTAGGTCACGTTTA 59.740 43.478 0.00 0.00 0.00 2.01
6555 6952 4.081087 AGAGGCATGTTAGGTCACGTTTAT 60.081 41.667 0.00 0.00 0.00 1.40
6556 6953 4.189231 AGGCATGTTAGGTCACGTTTATC 58.811 43.478 0.00 0.00 0.00 1.75
6557 6954 4.081087 AGGCATGTTAGGTCACGTTTATCT 60.081 41.667 0.00 0.00 0.00 1.98
6694 7091 0.809241 GGATGCAGAAGAGCTCCGTG 60.809 60.000 10.93 6.65 34.99 4.94
6758 7155 3.929948 GTGTAGCGCGCATCTGCC 61.930 66.667 35.10 13.82 37.91 4.85
6759 7156 4.449568 TGTAGCGCGCATCTGCCA 62.450 61.111 35.10 16.32 37.91 4.92
6760 7157 2.969238 GTAGCGCGCATCTGCCAT 60.969 61.111 35.10 12.60 37.91 4.40
6761 7158 2.203056 TAGCGCGCATCTGCCATT 60.203 55.556 35.10 11.76 37.91 3.16
6762 7159 2.536673 TAGCGCGCATCTGCCATTG 61.537 57.895 35.10 0.00 37.91 2.82
6763 7160 4.918129 GCGCGCATCTGCCATTGG 62.918 66.667 29.10 0.00 37.91 3.16
6764 7161 3.511595 CGCGCATCTGCCATTGGT 61.512 61.111 8.75 0.00 37.91 3.67
6766 7163 3.113745 CGCATCTGCCATTGGTCC 58.886 61.111 4.26 0.00 37.91 4.46
6767 7164 1.750018 CGCATCTGCCATTGGTCCA 60.750 57.895 4.26 0.00 37.91 4.02
6769 7166 0.896923 GCATCTGCCATTGGTCCAAA 59.103 50.000 8.75 0.00 34.31 3.28
6770 7167 1.134907 GCATCTGCCATTGGTCCAAAG 60.135 52.381 8.75 3.83 34.31 2.77
6771 7168 2.449464 CATCTGCCATTGGTCCAAAGA 58.551 47.619 8.75 7.29 0.00 2.52
6772 7169 2.205022 TCTGCCATTGGTCCAAAGAG 57.795 50.000 8.75 1.48 0.00 2.85
6773 7170 1.704628 TCTGCCATTGGTCCAAAGAGA 59.295 47.619 8.75 1.33 0.00 3.10
6774 7171 2.108075 TCTGCCATTGGTCCAAAGAGAA 59.892 45.455 8.75 0.00 0.00 2.87
6775 7172 2.892852 CTGCCATTGGTCCAAAGAGAAA 59.107 45.455 8.75 0.00 0.00 2.52
6776 7173 3.509442 TGCCATTGGTCCAAAGAGAAAT 58.491 40.909 8.75 0.00 0.00 2.17
6777 7174 3.258872 TGCCATTGGTCCAAAGAGAAATG 59.741 43.478 8.75 0.08 0.00 2.32
6778 7175 3.259123 GCCATTGGTCCAAAGAGAAATGT 59.741 43.478 8.75 0.00 29.64 2.71
6779 7176 4.813027 CCATTGGTCCAAAGAGAAATGTG 58.187 43.478 8.75 0.00 29.64 3.21
6791 7188 7.857885 CCAAAGAGAAATGTGTCAGTTTTCTAC 59.142 37.037 9.02 5.17 39.22 2.59
6792 7189 7.497925 AAGAGAAATGTGTCAGTTTTCTACC 57.502 36.000 9.02 1.29 39.22 3.18
6886 7283 1.341156 GGCTGCTGTCCATAGGGTCT 61.341 60.000 0.00 0.00 34.93 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 0.953471 TTCGATTCCTGTTGGTGCGG 60.953 55.000 0.00 0.00 34.23 5.69
125 126 0.320946 TGGTTCGGTGGTTCGATTCC 60.321 55.000 0.00 0.00 39.03 3.01
177 181 2.756283 CGAGGCGAGAGGAGGGTT 60.756 66.667 0.00 0.00 0.00 4.11
208 225 1.153349 CTAGGGCAAACTCCTCGCC 60.153 63.158 0.00 0.00 45.47 5.54
246 282 0.033090 AGTGTTCGTTCCTTCCCGAC 59.967 55.000 0.00 0.00 31.95 4.79
249 285 1.669211 CGAGAGTGTTCGTTCCTTCCC 60.669 57.143 0.00 0.00 35.91 3.97
270 306 1.512996 CGGCTTCCTCCTACGCGATA 61.513 60.000 15.93 0.00 0.00 2.92
271 307 2.846652 CGGCTTCCTCCTACGCGAT 61.847 63.158 15.93 0.00 0.00 4.58
273 309 4.570663 CCGGCTTCCTCCTACGCG 62.571 72.222 3.53 3.53 0.00 6.01
275 311 3.432051 CTGCCGGCTTCCTCCTACG 62.432 68.421 29.70 0.00 0.00 3.51
277 313 3.470888 GCTGCCGGCTTCCTCCTA 61.471 66.667 29.70 2.78 38.06 2.94
301 337 0.984230 GTAGCCCATAGCCATAGCCA 59.016 55.000 0.00 0.00 45.47 4.75
306 350 1.816863 CGTCCGTAGCCCATAGCCAT 61.817 60.000 0.00 0.00 45.47 4.40
327 371 1.967779 GATAGAACCTCTCTCCCCTGC 59.032 57.143 0.00 0.00 35.41 4.85
366 412 3.093835 TTCGGCCCATGGGGTAGG 61.094 66.667 32.23 6.75 46.51 3.18
367 413 2.070039 TCTTCGGCCCATGGGGTAG 61.070 63.158 32.23 18.41 46.51 3.18
369 415 3.728373 GTCTTCGGCCCATGGGGT 61.728 66.667 32.23 0.00 46.51 4.95
371 417 2.190578 GAGTCTTCGGCCCATGGG 59.809 66.667 27.87 27.87 38.57 4.00
372 418 2.202932 CGAGTCTTCGGCCCATGG 60.203 66.667 4.14 4.14 43.05 3.66
381 450 0.250338 AAACAGGCCCACGAGTCTTC 60.250 55.000 0.00 0.00 0.00 2.87
383 452 0.608640 CTAAACAGGCCCACGAGTCT 59.391 55.000 0.00 0.00 0.00 3.24
385 454 1.003718 GCTAAACAGGCCCACGAGT 60.004 57.895 0.00 0.00 0.00 4.18
452 532 8.035394 GGAGGAAAGGAAAGAAAATAATTGACC 58.965 37.037 0.00 0.00 0.00 4.02
460 540 2.826128 GCGGGAGGAAAGGAAAGAAAAT 59.174 45.455 0.00 0.00 0.00 1.82
568 648 3.241530 ACCCTCTCCTGCACGCAA 61.242 61.111 0.00 0.00 0.00 4.85
687 785 0.891373 CTTCTCTTCTCCTGTCGCCA 59.109 55.000 0.00 0.00 0.00 5.69
691 789 4.502962 CAATCACCTTCTCTTCTCCTGTC 58.497 47.826 0.00 0.00 0.00 3.51
692 790 3.307339 GCAATCACCTTCTCTTCTCCTGT 60.307 47.826 0.00 0.00 0.00 4.00
702 800 0.250901 AAGCACGGCAATCACCTTCT 60.251 50.000 0.00 0.00 0.00 2.85
714 812 2.921538 CTACGGCGAGAGAAGCACGG 62.922 65.000 16.62 0.00 36.08 4.94
715 813 1.583967 CTACGGCGAGAGAAGCACG 60.584 63.158 16.62 0.00 36.08 5.34
810 912 2.328989 CAACAGCTGCACCACACG 59.671 61.111 15.27 0.00 0.00 4.49
887 990 1.992170 AGCGACAATACCAACGACTC 58.008 50.000 0.00 0.00 0.00 3.36
919 1028 1.400494 GGACAACAGACACACAACCAC 59.600 52.381 0.00 0.00 0.00 4.16
978 1087 1.065126 GCCTCTGCTGGTTCCAACTAT 60.065 52.381 0.00 0.00 33.53 2.12
1084 1219 6.505044 TGTCTCTATGCAACGAGTAGTTAA 57.495 37.500 13.34 0.00 42.02 2.01
1086 1221 5.047943 AGTTGTCTCTATGCAACGAGTAGTT 60.048 40.000 13.34 0.00 46.66 2.24
1087 1222 4.459685 AGTTGTCTCTATGCAACGAGTAGT 59.540 41.667 13.34 3.86 46.66 2.73
1088 1223 4.987832 AGTTGTCTCTATGCAACGAGTAG 58.012 43.478 13.34 0.92 46.66 2.57
1089 1224 5.646793 AGTAGTTGTCTCTATGCAACGAGTA 59.353 40.000 13.34 1.84 46.66 2.59
1090 1225 3.944055 AGTTGTCTCTATGCAACGAGT 57.056 42.857 13.34 0.00 46.66 4.18
1091 1226 4.987832 AGTAGTTGTCTCTATGCAACGAG 58.012 43.478 8.81 8.81 46.66 4.18
1092 1227 5.646793 AGTAGTAGTTGTCTCTATGCAACGA 59.353 40.000 0.00 0.00 46.66 3.85
1093 1228 5.881447 AGTAGTAGTTGTCTCTATGCAACG 58.119 41.667 0.00 0.00 46.66 4.10
1094 1229 5.966503 CGAGTAGTAGTTGTCTCTATGCAAC 59.033 44.000 0.00 0.00 43.63 4.17
1095 1230 5.646793 ACGAGTAGTAGTTGTCTCTATGCAA 59.353 40.000 0.00 0.00 0.00 4.08
1096 1231 5.183969 ACGAGTAGTAGTTGTCTCTATGCA 58.816 41.667 0.00 0.00 0.00 3.96
1097 1232 5.738118 ACGAGTAGTAGTTGTCTCTATGC 57.262 43.478 0.00 0.00 0.00 3.14
1098 1233 5.966503 GCAACGAGTAGTAGTTGTCTCTATG 59.033 44.000 20.38 0.00 46.66 2.23
1099 1234 5.646793 TGCAACGAGTAGTAGTTGTCTCTAT 59.353 40.000 20.38 0.00 46.66 1.98
1100 1235 4.999311 TGCAACGAGTAGTAGTTGTCTCTA 59.001 41.667 20.38 4.73 46.66 2.43
1101 1236 3.819337 TGCAACGAGTAGTAGTTGTCTCT 59.181 43.478 20.38 0.00 46.66 3.10
1102 1237 4.156664 TGCAACGAGTAGTAGTTGTCTC 57.843 45.455 20.38 8.42 46.66 3.36
1103 1238 4.785511 ATGCAACGAGTAGTAGTTGTCT 57.214 40.909 20.38 8.94 46.66 3.41
1104 1239 5.877031 TCTATGCAACGAGTAGTAGTTGTC 58.123 41.667 20.38 14.51 46.66 3.18
1105 1240 5.646793 TCTCTATGCAACGAGTAGTAGTTGT 59.353 40.000 20.38 8.16 46.66 3.32
1107 1242 5.646793 TGTCTCTATGCAACGAGTAGTAGTT 59.353 40.000 13.34 0.00 0.00 2.24
1108 1243 5.183969 TGTCTCTATGCAACGAGTAGTAGT 58.816 41.667 13.34 0.00 0.00 2.73
1109 1244 5.736486 TGTCTCTATGCAACGAGTAGTAG 57.264 43.478 13.34 0.00 0.00 2.57
1114 1249 3.944055 AGTTGTCTCTATGCAACGAGT 57.056 42.857 13.34 0.00 46.66 4.18
1130 1265 3.676873 GCCCCAATGCACAAAGATAGTTG 60.677 47.826 0.00 0.00 34.52 3.16
1404 1540 2.477189 GGTGGATCAAAATAACCGCACG 60.477 50.000 0.00 0.00 35.01 5.34
1408 1544 4.457603 TGAACAGGTGGATCAAAATAACCG 59.542 41.667 0.00 0.00 35.99 4.44
1453 1589 4.167892 TCATCCCAGTTATTACAGGCCAAT 59.832 41.667 5.01 0.00 29.93 3.16
1458 1594 5.363868 TCAGTCTCATCCCAGTTATTACAGG 59.636 44.000 0.00 0.00 0.00 4.00
1459 1595 6.471233 TCAGTCTCATCCCAGTTATTACAG 57.529 41.667 0.00 0.00 0.00 2.74
1689 1906 6.055588 AGTAATCACCAAAATATGAGGACCG 58.944 40.000 0.00 0.00 0.00 4.79
1723 1940 5.139727 TCATGTGGTTGTCCTTCTTGAATT 58.860 37.500 0.00 0.00 34.23 2.17
1724 1941 4.728772 TCATGTGGTTGTCCTTCTTGAAT 58.271 39.130 0.00 0.00 34.23 2.57
1830 2136 2.942376 TGGCCAAGAATATAACTGCACG 59.058 45.455 0.61 0.00 0.00 5.34
1895 2206 6.370442 TGAAATGTGGGTCTTCATAGTTTACG 59.630 38.462 0.00 0.00 0.00 3.18
2047 2358 7.801547 ATGAACGAATGCATAAAAGAAAGTG 57.198 32.000 0.00 0.00 0.00 3.16
2242 2553 7.092137 TGAAATTACAGATTTGGCATCTGAG 57.908 36.000 21.61 0.33 46.25 3.35
2353 2664 4.082571 CCAAACCAAACTAGCAGAATGGAG 60.083 45.833 13.95 0.00 35.86 3.86
2403 2714 4.092821 GCGTTGCAGATGTACAAAGATACA 59.907 41.667 0.00 0.00 39.35 2.29
2527 2838 5.030147 AGTACCAGGATATTGAACCAGTCA 58.970 41.667 0.00 0.00 0.00 3.41
2660 3001 1.680735 TGCTCGTTGATGGCACTTTTT 59.319 42.857 0.00 0.00 0.00 1.94
2675 3016 3.806316 AAACGTGGTAAGAAATGCTCG 57.194 42.857 0.00 0.00 0.00 5.03
2862 3203 2.302199 CTGATGAGCCTGGCTGCGTA 62.302 60.000 28.82 9.94 39.88 4.42
2974 3323 4.816385 ACTCTGAACACCACAACAATGTAG 59.184 41.667 0.00 0.00 37.82 2.74
3022 3371 4.019681 TGGTCTATACTGGTTTCCCTGTTG 60.020 45.833 0.00 0.00 42.37 3.33
3042 3391 6.521162 GGTCATCAAAGGTATTTTGTTTGGT 58.479 36.000 0.22 0.00 45.17 3.67
3131 3485 4.037923 ACACATTCAACACCATGAGAAACC 59.962 41.667 0.00 0.00 0.00 3.27
3192 3546 1.205655 TCAAGAACAGAGGCCTGATCG 59.794 52.381 12.00 0.00 44.14 3.69
3298 3652 5.670792 ATTGATGAATTCACACCAGCAAT 57.329 34.783 11.07 6.03 40.64 3.56
3483 3845 8.545420 TCATTATTTTTCGCGGATTACTTCTAC 58.455 33.333 6.13 0.00 0.00 2.59
3484 3846 8.651391 TCATTATTTTTCGCGGATTACTTCTA 57.349 30.769 6.13 0.00 0.00 2.10
3583 3945 2.550830 ACTTCTGACCAAATCGCTGT 57.449 45.000 0.00 0.00 0.00 4.40
3586 3948 3.000322 CGACATACTTCTGACCAAATCGC 60.000 47.826 0.00 0.00 0.00 4.58
3786 4148 5.519566 TCAAACATCATGTGCACTGTTTTTC 59.480 36.000 24.33 0.00 39.19 2.29
4108 4477 1.001378 ACAGTGAGCATTTGAAACCGC 60.001 47.619 0.00 0.00 0.00 5.68
4110 4479 5.438761 ACTAACAGTGAGCATTTGAAACC 57.561 39.130 0.00 0.00 0.00 3.27
4234 4607 6.805271 GTGCATCATATTAACTGATCAATGGC 59.195 38.462 0.00 0.00 31.00 4.40
4287 4660 8.845227 TGTTATCAACTTTCAGCTCATGTAAAA 58.155 29.630 0.00 0.00 0.00 1.52
4342 4715 2.286365 AATTTGGAAGTCCGCTGGAA 57.714 45.000 0.00 0.00 39.43 3.53
4401 4775 5.481473 AGGAAATGTGCACCATTGTAGAAAT 59.519 36.000 15.69 0.00 43.04 2.17
4414 4788 2.030371 TCTGCAAACAGGAAATGTGCA 58.970 42.857 0.00 0.00 43.00 4.57
4424 4798 6.022163 AGAATCTCCATTTTCTGCAAACAG 57.978 37.500 0.00 0.00 45.95 3.16
4573 4947 5.606749 TGAGGACTAACACTATATGCCCAAT 59.393 40.000 0.00 0.00 0.00 3.16
4576 4950 5.070580 AGTTGAGGACTAACACTATATGCCC 59.929 44.000 0.00 0.00 36.65 5.36
4586 4960 1.270625 CGGCCAAGTTGAGGACTAACA 60.271 52.381 2.24 0.00 37.72 2.41
4675 5049 6.684555 CCTCGATTTTAAATTTCTCTGCTTCG 59.315 38.462 0.00 0.00 0.00 3.79
4723 5097 2.953488 TACCTGCATGCACTCGCCA 61.953 57.895 18.46 0.00 37.32 5.69
4756 5130 2.155155 CAGAACCTCGTCGCAAAACTAC 59.845 50.000 0.00 0.00 0.00 2.73
4765 5139 0.319555 TTTCTGCCAGAACCTCGTCG 60.320 55.000 6.65 0.00 33.26 5.12
4805 5179 6.600882 TTCCTTTACACGTTCCTAGAGAAT 57.399 37.500 0.00 0.00 36.69 2.40
4806 5180 6.409524 TTTCCTTTACACGTTCCTAGAGAA 57.590 37.500 0.00 0.00 0.00 2.87
4807 5181 6.600882 ATTTCCTTTACACGTTCCTAGAGA 57.399 37.500 0.00 0.00 0.00 3.10
4808 5182 8.414778 AGATATTTCCTTTACACGTTCCTAGAG 58.585 37.037 0.00 0.00 0.00 2.43
4809 5183 8.302515 AGATATTTCCTTTACACGTTCCTAGA 57.697 34.615 0.00 0.00 0.00 2.43
4861 5239 3.122278 CCAAATTTTGAGTGCTTGATGCG 59.878 43.478 10.72 0.00 46.63 4.73
4894 5272 2.169144 GCAGATGGCAAGGGCTTAAATT 59.831 45.455 0.00 0.00 43.97 1.82
4932 5310 3.119708 GCAATAAGCAGGTCAGAAACTGG 60.120 47.826 5.72 0.00 44.79 4.00
4933 5311 4.088823 GCAATAAGCAGGTCAGAAACTG 57.911 45.455 0.00 0.00 44.79 3.16
5014 5407 4.613944 TCGTCGTCACTAAAAGTGTTCAT 58.386 39.130 6.93 0.00 46.03 2.57
5031 5424 2.675423 TCCCTGGTGTCCTCGTCG 60.675 66.667 0.00 0.00 0.00 5.12
5094 5487 4.202202 CCAGTAGCATCTTTAGAGGGTCTG 60.202 50.000 0.00 7.45 37.71 3.51
5121 5514 0.252239 TGGAAGCTCCACCTCTAGCA 60.252 55.000 1.25 0.00 42.67 3.49
5367 5763 4.376413 GCACACAAGTTCTACGACATTCAG 60.376 45.833 0.00 0.00 0.00 3.02
5390 5786 5.106396 GGTCAGATCAATGTTGAAGTTCCAG 60.106 44.000 0.00 0.00 41.13 3.86
5420 5816 2.669364 CAGCACTTGACCTGAAAATGC 58.331 47.619 0.00 0.00 0.00 3.56
5472 5868 1.153745 GTTCGCTGCGTCCTCATCT 60.154 57.895 22.48 0.00 0.00 2.90
5487 5883 9.872757 TTTTCAACAACTTCATATACTTCGTTC 57.127 29.630 0.00 0.00 0.00 3.95
5497 5893 8.832521 ACGTACTGAATTTTCAACAACTTCATA 58.167 29.630 0.00 0.00 36.64 2.15
5545 5941 8.985315 ATTTGTCATGGATGTATAATGACTGT 57.015 30.769 14.17 0.00 46.69 3.55
5549 5945 7.287235 TGCCAATTTGTCATGGATGTATAATGA 59.713 33.333 0.00 0.00 39.12 2.57
5551 5947 7.600231 TGCCAATTTGTCATGGATGTATAAT 57.400 32.000 0.00 0.00 39.12 1.28
5645 6041 1.873591 CTTTGTGGGAAACTGTCCTCG 59.126 52.381 0.00 0.00 46.92 4.63
5693 6089 3.465403 CCTCTGGCCCGACCTCTG 61.465 72.222 0.00 0.00 40.22 3.35
5840 6236 2.068837 TCCCACACGACAATTACGAC 57.931 50.000 10.40 0.00 34.70 4.34
5853 6249 2.098280 CGACACAAACAACATTCCCACA 59.902 45.455 0.00 0.00 0.00 4.17
5857 6253 3.414549 ACACGACACAAACAACATTCC 57.585 42.857 0.00 0.00 0.00 3.01
5873 6269 8.357796 ACTCTTGATATCAATCATGTAACACG 57.642 34.615 18.26 3.00 41.73 4.49
5892 6288 3.307782 CCTGCAAAACAGCAAAACTCTTG 59.692 43.478 0.00 0.00 45.78 3.02
5955 6351 1.688735 TCCGGATCGCTTCATCAGAAT 59.311 47.619 0.00 0.00 32.31 2.40
5960 6356 2.288457 TGATTCTCCGGATCGCTTCATC 60.288 50.000 3.57 0.00 0.00 2.92
5971 6367 1.153086 CCTGCCCTTGATTCTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
6010 6406 0.967380 CCAGCCAGGTTGATGGGAAC 60.967 60.000 4.51 0.00 40.97 3.62
6011 6407 1.383799 CCAGCCAGGTTGATGGGAA 59.616 57.895 4.51 0.00 40.97 3.97
6012 6408 3.089838 CCAGCCAGGTTGATGGGA 58.910 61.111 4.51 0.00 40.97 4.37
6019 6415 4.335647 CAGACCGCCAGCCAGGTT 62.336 66.667 0.00 0.00 41.51 3.50
6042 6438 2.224066 CGAGTTCCACTTGTCTTCCACT 60.224 50.000 0.00 0.00 0.00 4.00
6046 6442 3.675698 GTGATCGAGTTCCACTTGTCTTC 59.324 47.826 0.00 0.00 31.48 2.87
6149 6545 8.409371 ACAGAGTATATGCCGATGATAATACTG 58.591 37.037 0.00 0.00 0.00 2.74
6150 6546 8.526667 ACAGAGTATATGCCGATGATAATACT 57.473 34.615 0.00 0.00 0.00 2.12
6151 6547 9.025020 CAACAGAGTATATGCCGATGATAATAC 57.975 37.037 0.00 0.00 0.00 1.89
6152 6548 7.706607 GCAACAGAGTATATGCCGATGATAATA 59.293 37.037 0.00 0.00 32.73 0.98
6153 6549 6.536582 GCAACAGAGTATATGCCGATGATAAT 59.463 38.462 0.00 0.00 32.73 1.28
6163 6559 2.843701 AGCCTGCAACAGAGTATATGC 58.156 47.619 0.00 0.00 39.22 3.14
6170 6566 1.274728 ACAGACTAGCCTGCAACAGAG 59.725 52.381 5.89 0.00 37.68 3.35
6177 6573 0.734253 CACACGACAGACTAGCCTGC 60.734 60.000 5.89 0.00 37.68 4.85
6188 6584 0.320050 TGCCATAAGCTCACACGACA 59.680 50.000 0.00 0.00 44.23 4.35
6198 6594 5.474825 GAGTACTTAGAGGATGCCATAAGC 58.525 45.833 0.00 0.00 44.14 3.09
6199 6595 5.046950 GGGAGTACTTAGAGGATGCCATAAG 60.047 48.000 0.00 4.97 33.86 1.73
6200 6596 4.838986 GGGAGTACTTAGAGGATGCCATAA 59.161 45.833 0.00 0.00 0.00 1.90
6201 6597 4.108124 AGGGAGTACTTAGAGGATGCCATA 59.892 45.833 0.00 0.00 0.00 2.74
6202 6598 3.116551 AGGGAGTACTTAGAGGATGCCAT 60.117 47.826 0.00 0.00 0.00 4.40
6203 6599 2.247635 AGGGAGTACTTAGAGGATGCCA 59.752 50.000 0.00 0.00 0.00 4.92
6204 6600 2.894765 GAGGGAGTACTTAGAGGATGCC 59.105 54.545 0.00 0.00 0.00 4.40
6206 6602 3.150767 CGGAGGGAGTACTTAGAGGATG 58.849 54.545 0.00 0.00 0.00 3.51
6207 6603 2.784682 ACGGAGGGAGTACTTAGAGGAT 59.215 50.000 0.00 0.00 0.00 3.24
6208 6604 2.203584 ACGGAGGGAGTACTTAGAGGA 58.796 52.381 0.00 0.00 0.00 3.71
6209 6605 2.732844 ACGGAGGGAGTACTTAGAGG 57.267 55.000 0.00 0.00 0.00 3.69
6211 6607 4.313020 AGAAACGGAGGGAGTACTTAGA 57.687 45.455 0.00 0.00 0.00 2.10
6212 6608 6.521151 TTTAGAAACGGAGGGAGTACTTAG 57.479 41.667 0.00 0.00 0.00 2.18
6213 6609 8.773033 ATATTTAGAAACGGAGGGAGTACTTA 57.227 34.615 0.00 0.00 0.00 2.24
6215 6611 8.773033 TTATATTTAGAAACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
6216 6612 8.087136 CCTTATATTTAGAAACGGAGGGAGTAC 58.913 40.741 0.00 0.00 0.00 2.73
6217 6613 7.256083 GCCTTATATTTAGAAACGGAGGGAGTA 60.256 40.741 0.00 0.00 0.00 2.59
6218 6614 6.464039 GCCTTATATTTAGAAACGGAGGGAGT 60.464 42.308 0.00 0.00 0.00 3.85
6219 6615 5.932883 GCCTTATATTTAGAAACGGAGGGAG 59.067 44.000 0.00 0.00 0.00 4.30
6220 6616 5.605488 AGCCTTATATTTAGAAACGGAGGGA 59.395 40.000 0.00 0.00 0.00 4.20
6221 6617 5.866207 AGCCTTATATTTAGAAACGGAGGG 58.134 41.667 0.00 0.00 0.00 4.30
6222 6618 7.803279 AAAGCCTTATATTTAGAAACGGAGG 57.197 36.000 0.00 0.00 0.00 4.30
6273 6669 8.993424 AGTGAATCTACACCCTAAAATACATCT 58.007 33.333 0.00 0.00 41.12 2.90
6274 6670 9.262358 GAGTGAATCTACACCCTAAAATACATC 57.738 37.037 0.00 0.00 41.12 3.06
6275 6671 8.768397 TGAGTGAATCTACACCCTAAAATACAT 58.232 33.333 0.00 0.00 41.12 2.29
6276 6672 8.141298 TGAGTGAATCTACACCCTAAAATACA 57.859 34.615 0.00 0.00 41.12 2.29
6277 6673 9.614792 AATGAGTGAATCTACACCCTAAAATAC 57.385 33.333 0.00 0.00 41.12 1.89
6279 6675 9.533831 AAAATGAGTGAATCTACACCCTAAAAT 57.466 29.630 0.00 0.00 41.12 1.82
6280 6676 8.792633 CAAAATGAGTGAATCTACACCCTAAAA 58.207 33.333 0.00 0.00 41.12 1.52
6281 6677 7.094377 GCAAAATGAGTGAATCTACACCCTAAA 60.094 37.037 0.00 0.00 41.12 1.85
6282 6678 6.374333 GCAAAATGAGTGAATCTACACCCTAA 59.626 38.462 0.00 0.00 41.12 2.69
6283 6679 5.880332 GCAAAATGAGTGAATCTACACCCTA 59.120 40.000 0.00 0.00 41.12 3.53
6284 6680 4.702131 GCAAAATGAGTGAATCTACACCCT 59.298 41.667 0.00 0.00 41.12 4.34
6285 6681 4.142381 GGCAAAATGAGTGAATCTACACCC 60.142 45.833 0.00 0.00 41.12 4.61
6286 6682 4.142381 GGGCAAAATGAGTGAATCTACACC 60.142 45.833 0.00 0.00 41.12 4.16
6287 6683 4.142381 GGGGCAAAATGAGTGAATCTACAC 60.142 45.833 0.00 0.00 40.60 2.90
6288 6684 4.016444 GGGGCAAAATGAGTGAATCTACA 58.984 43.478 0.00 0.00 0.00 2.74
6289 6685 3.065371 CGGGGCAAAATGAGTGAATCTAC 59.935 47.826 0.00 0.00 0.00 2.59
6290 6686 3.278574 CGGGGCAAAATGAGTGAATCTA 58.721 45.455 0.00 0.00 0.00 1.98
6291 6687 2.094675 CGGGGCAAAATGAGTGAATCT 58.905 47.619 0.00 0.00 0.00 2.40
6292 6688 1.818674 ACGGGGCAAAATGAGTGAATC 59.181 47.619 0.00 0.00 0.00 2.52
6293 6689 1.923356 ACGGGGCAAAATGAGTGAAT 58.077 45.000 0.00 0.00 0.00 2.57
6294 6690 2.570415 TACGGGGCAAAATGAGTGAA 57.430 45.000 0.00 0.00 0.00 3.18
6295 6691 2.290641 ACATACGGGGCAAAATGAGTGA 60.291 45.455 0.00 0.00 0.00 3.41
6296 6692 2.091541 ACATACGGGGCAAAATGAGTG 58.908 47.619 0.00 0.00 0.00 3.51
6297 6693 2.507407 ACATACGGGGCAAAATGAGT 57.493 45.000 0.00 0.00 0.00 3.41
6298 6694 2.290641 GCTACATACGGGGCAAAATGAG 59.709 50.000 0.00 0.00 0.00 2.90
6299 6695 2.294074 GCTACATACGGGGCAAAATGA 58.706 47.619 0.00 0.00 0.00 2.57
6300 6696 1.336755 GGCTACATACGGGGCAAAATG 59.663 52.381 0.00 0.00 0.00 2.32
6301 6697 1.687563 GGCTACATACGGGGCAAAAT 58.312 50.000 0.00 0.00 0.00 1.82
6302 6698 0.394625 GGGCTACATACGGGGCAAAA 60.395 55.000 0.00 0.00 0.00 2.44
6303 6699 1.225148 GGGCTACATACGGGGCAAA 59.775 57.895 0.00 0.00 0.00 3.68
6304 6700 1.349542 ATGGGCTACATACGGGGCAA 61.350 55.000 0.00 0.00 38.26 4.52
6305 6701 0.472161 TATGGGCTACATACGGGGCA 60.472 55.000 0.00 0.00 41.03 5.36
6306 6702 0.909623 ATATGGGCTACATACGGGGC 59.090 55.000 4.22 0.00 44.41 5.80
6307 6703 2.569853 TCAATATGGGCTACATACGGGG 59.430 50.000 4.22 0.00 44.41 5.73
6308 6704 3.973206 TCAATATGGGCTACATACGGG 57.027 47.619 4.22 0.00 44.41 5.28
6309 6705 6.173339 AGATTTCAATATGGGCTACATACGG 58.827 40.000 4.22 1.38 44.41 4.02
6310 6706 8.948631 ATAGATTTCAATATGGGCTACATACG 57.051 34.615 4.22 0.00 44.41 3.06
6316 6712 9.753674 CCCTTTTATAGATTTCAATATGGGCTA 57.246 33.333 0.00 0.00 0.00 3.93
6317 6713 8.655935 CCCTTTTATAGATTTCAATATGGGCT 57.344 34.615 0.00 0.00 0.00 5.19
6318 6714 7.323420 GCCCTTTTATAGATTTCAATATGGGC 58.677 38.462 0.00 0.00 45.34 5.36
6319 6715 8.655935 AGCCCTTTTATAGATTTCAATATGGG 57.344 34.615 0.00 0.00 0.00 4.00
6335 6731 9.847224 CTCTGTTCCTAAATATAAGCCCTTTTA 57.153 33.333 0.00 0.00 0.00 1.52
6336 6732 7.780271 CCTCTGTTCCTAAATATAAGCCCTTTT 59.220 37.037 0.00 0.00 0.00 2.27
6337 6733 7.290813 CCTCTGTTCCTAAATATAAGCCCTTT 58.709 38.462 0.00 0.00 0.00 3.11
6338 6734 6.183361 CCCTCTGTTCCTAAATATAAGCCCTT 60.183 42.308 0.00 0.00 0.00 3.95
6339 6735 5.310857 CCCTCTGTTCCTAAATATAAGCCCT 59.689 44.000 0.00 0.00 0.00 5.19
6340 6736 5.309806 TCCCTCTGTTCCTAAATATAAGCCC 59.690 44.000 0.00 0.00 0.00 5.19
6341 6737 6.435292 TCCCTCTGTTCCTAAATATAAGCC 57.565 41.667 0.00 0.00 0.00 4.35
6342 6738 7.510407 ACTTCCCTCTGTTCCTAAATATAAGC 58.490 38.462 0.00 0.00 0.00 3.09
6345 6741 9.670442 ACATACTTCCCTCTGTTCCTAAATATA 57.330 33.333 0.00 0.00 0.00 0.86
6346 6742 8.568617 ACATACTTCCCTCTGTTCCTAAATAT 57.431 34.615 0.00 0.00 0.00 1.28
6347 6743 7.989947 ACATACTTCCCTCTGTTCCTAAATA 57.010 36.000 0.00 0.00 0.00 1.40
6348 6744 6.893020 ACATACTTCCCTCTGTTCCTAAAT 57.107 37.500 0.00 0.00 0.00 1.40
6349 6745 6.697641 AACATACTTCCCTCTGTTCCTAAA 57.302 37.500 0.00 0.00 0.00 1.85
6350 6746 7.989947 ATAACATACTTCCCTCTGTTCCTAA 57.010 36.000 0.00 0.00 34.02 2.69
6351 6747 7.728981 CCTATAACATACTTCCCTCTGTTCCTA 59.271 40.741 0.00 0.00 34.02 2.94
6352 6748 6.555360 CCTATAACATACTTCCCTCTGTTCCT 59.445 42.308 0.00 0.00 34.02 3.36
6353 6749 6.741801 GCCTATAACATACTTCCCTCTGTTCC 60.742 46.154 0.00 0.00 34.02 3.62
6354 6750 6.183360 TGCCTATAACATACTTCCCTCTGTTC 60.183 42.308 0.00 0.00 34.02 3.18
6355 6751 5.665812 TGCCTATAACATACTTCCCTCTGTT 59.334 40.000 0.00 0.00 36.00 3.16
6356 6752 5.216622 TGCCTATAACATACTTCCCTCTGT 58.783 41.667 0.00 0.00 0.00 3.41
6357 6753 5.808366 TGCCTATAACATACTTCCCTCTG 57.192 43.478 0.00 0.00 0.00 3.35
6358 6754 6.558775 TCAATGCCTATAACATACTTCCCTCT 59.441 38.462 0.00 0.00 0.00 3.69
6359 6755 6.769512 TCAATGCCTATAACATACTTCCCTC 58.230 40.000 0.00 0.00 0.00 4.30
6360 6756 6.763715 TCAATGCCTATAACATACTTCCCT 57.236 37.500 0.00 0.00 0.00 4.20
6361 6757 7.335422 CAGATCAATGCCTATAACATACTTCCC 59.665 40.741 0.00 0.00 0.00 3.97
6362 6758 8.097038 TCAGATCAATGCCTATAACATACTTCC 58.903 37.037 0.00 0.00 0.00 3.46
6363 6759 9.494271 TTCAGATCAATGCCTATAACATACTTC 57.506 33.333 0.00 0.00 0.00 3.01
6364 6760 9.851686 TTTCAGATCAATGCCTATAACATACTT 57.148 29.630 0.00 0.00 0.00 2.24
6365 6761 9.277783 GTTTCAGATCAATGCCTATAACATACT 57.722 33.333 0.00 0.00 0.00 2.12
6366 6762 9.277783 AGTTTCAGATCAATGCCTATAACATAC 57.722 33.333 0.00 0.00 0.00 2.39
6367 6763 9.276590 CAGTTTCAGATCAATGCCTATAACATA 57.723 33.333 0.00 0.00 0.00 2.29
6368 6764 7.994911 TCAGTTTCAGATCAATGCCTATAACAT 59.005 33.333 0.00 0.00 0.00 2.71
6369 6765 7.280876 GTCAGTTTCAGATCAATGCCTATAACA 59.719 37.037 0.00 0.00 0.00 2.41
6370 6766 7.497249 AGTCAGTTTCAGATCAATGCCTATAAC 59.503 37.037 0.00 0.00 0.00 1.89
6371 6767 7.568349 AGTCAGTTTCAGATCAATGCCTATAA 58.432 34.615 0.00 0.00 0.00 0.98
6372 6768 7.129457 AGTCAGTTTCAGATCAATGCCTATA 57.871 36.000 0.00 0.00 0.00 1.31
6373 6769 5.999044 AGTCAGTTTCAGATCAATGCCTAT 58.001 37.500 0.00 0.00 0.00 2.57
6374 6770 5.426689 AGTCAGTTTCAGATCAATGCCTA 57.573 39.130 0.00 0.00 0.00 3.93
6400 6796 7.615582 TCGTAATTGCTTGAGAAAATGATCT 57.384 32.000 0.00 0.00 0.00 2.75
6401 6797 8.673626 TTTCGTAATTGCTTGAGAAAATGATC 57.326 30.769 0.00 0.00 0.00 2.92
6422 6819 9.542462 TTTCCTGGATTATCAGTACTATTTTCG 57.458 33.333 0.00 0.00 33.14 3.46
6428 6825 5.307196 GGCCTTTCCTGGATTATCAGTACTA 59.693 44.000 0.00 0.00 33.14 1.82
6430 6827 4.141482 TGGCCTTTCCTGGATTATCAGTAC 60.141 45.833 3.32 0.00 35.26 2.73
6432 6829 2.852449 TGGCCTTTCCTGGATTATCAGT 59.148 45.455 3.32 0.00 35.26 3.41
6485 6882 6.391227 AGGAAACTGTTTCTGTAATTGTGG 57.609 37.500 26.93 0.00 41.13 4.17
6522 6919 4.641989 CCTAACATGCCTCTGTAATTTGCT 59.358 41.667 0.00 0.00 0.00 3.91
6542 6939 8.622157 CAGAGAAGATTAGATAAACGTGACCTA 58.378 37.037 0.00 0.00 0.00 3.08
6543 6940 7.416890 CCAGAGAAGATTAGATAAACGTGACCT 60.417 40.741 0.00 0.00 0.00 3.85
6544 6941 6.697892 CCAGAGAAGATTAGATAAACGTGACC 59.302 42.308 0.00 0.00 0.00 4.02
6545 6942 7.259161 ACCAGAGAAGATTAGATAAACGTGAC 58.741 38.462 0.00 0.00 0.00 3.67
6546 6943 7.406031 ACCAGAGAAGATTAGATAAACGTGA 57.594 36.000 0.00 0.00 0.00 4.35
6547 6944 9.400638 GATACCAGAGAAGATTAGATAAACGTG 57.599 37.037 0.00 0.00 0.00 4.49
6548 6945 8.578151 GGATACCAGAGAAGATTAGATAAACGT 58.422 37.037 0.00 0.00 0.00 3.99
6549 6946 8.798402 AGGATACCAGAGAAGATTAGATAAACG 58.202 37.037 0.00 0.00 37.17 3.60
6553 6950 9.527157 CAAGAGGATACCAGAGAAGATTAGATA 57.473 37.037 0.00 0.00 37.17 1.98
6554 6951 8.231007 TCAAGAGGATACCAGAGAAGATTAGAT 58.769 37.037 0.00 0.00 37.17 1.98
6555 6952 7.587258 TCAAGAGGATACCAGAGAAGATTAGA 58.413 38.462 0.00 0.00 37.17 2.10
6556 6953 7.831691 TCAAGAGGATACCAGAGAAGATTAG 57.168 40.000 0.00 0.00 37.17 1.73
6731 7128 1.154654 GCGCTACACAAACACGAGC 60.155 57.895 0.00 0.00 0.00 5.03
6758 7155 5.009911 TGACACATTTCTCTTTGGACCAATG 59.990 40.000 7.99 10.81 0.00 2.82
6759 7156 5.139727 TGACACATTTCTCTTTGGACCAAT 58.860 37.500 7.99 0.00 0.00 3.16
6760 7157 4.531854 TGACACATTTCTCTTTGGACCAA 58.468 39.130 1.69 1.69 0.00 3.67
6761 7158 4.136796 CTGACACATTTCTCTTTGGACCA 58.863 43.478 0.00 0.00 0.00 4.02
6762 7159 4.137543 ACTGACACATTTCTCTTTGGACC 58.862 43.478 0.00 0.00 0.00 4.46
6763 7160 5.757850 AACTGACACATTTCTCTTTGGAC 57.242 39.130 0.00 0.00 0.00 4.02
6764 7161 6.603201 AGAAAACTGACACATTTCTCTTTGGA 59.397 34.615 5.33 0.00 38.65 3.53
6766 7163 7.857885 GGTAGAAAACTGACACATTTCTCTTTG 59.142 37.037 11.94 0.00 41.24 2.77
6767 7164 7.556275 TGGTAGAAAACTGACACATTTCTCTTT 59.444 33.333 11.94 0.00 41.24 2.52
6769 7166 6.591935 TGGTAGAAAACTGACACATTTCTCT 58.408 36.000 11.94 6.02 41.24 3.10
6770 7167 6.861065 TGGTAGAAAACTGACACATTTCTC 57.139 37.500 11.94 6.57 41.24 2.87
6771 7168 7.502226 TGATTGGTAGAAAACTGACACATTTCT 59.498 33.333 12.79 12.79 43.66 2.52
6772 7169 7.648142 TGATTGGTAGAAAACTGACACATTTC 58.352 34.615 0.00 0.00 34.14 2.17
6773 7170 7.581213 TGATTGGTAGAAAACTGACACATTT 57.419 32.000 0.00 0.00 0.00 2.32
6774 7171 7.285401 AGTTGATTGGTAGAAAACTGACACATT 59.715 33.333 0.00 0.00 30.17 2.71
6775 7172 6.772716 AGTTGATTGGTAGAAAACTGACACAT 59.227 34.615 0.00 0.00 30.17 3.21
6776 7173 6.119536 AGTTGATTGGTAGAAAACTGACACA 58.880 36.000 0.00 0.00 30.17 3.72
6777 7174 6.619801 AGTTGATTGGTAGAAAACTGACAC 57.380 37.500 0.00 0.00 30.17 3.67
6778 7175 7.026631 CAAGTTGATTGGTAGAAAACTGACA 57.973 36.000 0.00 0.00 35.08 3.58
6791 7188 7.703328 GTATTACATACACCCAAGTTGATTGG 58.297 38.462 3.87 0.00 44.94 3.16
6792 7189 8.275015 TGTATTACATACACCCAAGTTGATTG 57.725 34.615 3.87 3.32 40.60 2.67
6853 7250 2.109126 CAGCCTCTTGGTAAGCGCC 61.109 63.158 2.29 0.00 35.27 6.53
6886 7283 1.065926 CATGGAGCTCTGGCAGTTACA 60.066 52.381 15.27 8.93 41.70 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.