Multiple sequence alignment - TraesCS2A01G528600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G528600 chr2A 100.000 4800 0 0 1 4800 747606372 747611171 0.000000e+00 8865.0
1 TraesCS2A01G528600 chr2A 84.091 792 105 17 1221 2000 747310087 747310869 0.000000e+00 745.0
2 TraesCS2A01G528600 chr2A 83.133 166 15 9 4034 4188 79315104 79315267 6.480000e-29 139.0
3 TraesCS2A01G528600 chr2A 81.765 170 18 9 4029 4187 127198486 127198319 3.900000e-26 130.0
4 TraesCS2A01G528600 chr2A 88.889 72 7 1 830 900 542559136 542559207 2.380000e-13 87.9
5 TraesCS2A01G528600 chr2D 92.149 2573 135 27 889 3417 617388139 617390688 0.000000e+00 3570.0
6 TraesCS2A01G528600 chr2D 93.607 610 26 5 4192 4800 617391069 617391666 0.000000e+00 898.0
7 TraesCS2A01G528600 chr2D 80.826 1017 136 40 1016 2000 617151245 617150256 0.000000e+00 743.0
8 TraesCS2A01G528600 chr2D 88.690 168 17 2 3861 4027 617390884 617391050 2.260000e-48 204.0
9 TraesCS2A01G528600 chr2D 85.567 194 12 2 3416 3609 617390648 617390825 6.340000e-44 189.0
10 TraesCS2A01G528600 chr2D 92.708 96 7 0 1 96 617388051 617388146 6.480000e-29 139.0
11 TraesCS2A01G528600 chr2D 95.000 60 3 0 829 888 117392730 117392789 1.420000e-15 95.3
12 TraesCS2A01G528600 chr2D 91.429 70 5 1 829 897 399440321 399440390 1.420000e-15 95.3
13 TraesCS2A01G528600 chr2D 96.364 55 2 0 3741 3795 617390826 617390880 1.840000e-14 91.6
14 TraesCS2A01G528600 chr2D 90.909 66 6 0 829 894 159824438 159824373 6.620000e-14 89.8
15 TraesCS2A01G528600 chr2D 90.000 70 6 1 830 898 472501519 472501450 6.620000e-14 89.8
16 TraesCS2A01G528600 chr2B 92.179 2391 125 26 889 3251 753088896 753091252 0.000000e+00 3323.0
17 TraesCS2A01G528600 chr2B 93.631 738 43 3 96 830 117071628 117072364 0.000000e+00 1099.0
18 TraesCS2A01G528600 chr2B 93.531 742 43 4 93 831 256325882 256325143 0.000000e+00 1099.0
19 TraesCS2A01G528600 chr2B 92.109 735 46 2 3118 3852 753091158 753091880 0.000000e+00 1026.0
20 TraesCS2A01G528600 chr2B 90.368 571 32 7 4227 4797 753092029 753092576 0.000000e+00 728.0
21 TraesCS2A01G528600 chr2B 87.117 163 9 7 4034 4185 76912138 76912299 1.780000e-39 174.0
22 TraesCS2A01G528600 chr3D 93.700 746 42 4 90 831 583585502 583586246 0.000000e+00 1112.0
23 TraesCS2A01G528600 chr3D 85.106 188 13 10 4027 4201 528611696 528611511 1.370000e-40 178.0
24 TraesCS2A01G528600 chr3D 83.974 156 19 4 4037 4189 307237066 307237218 1.390000e-30 145.0
25 TraesCS2A01G528600 chr1A 93.911 739 42 2 95 831 482776758 482776021 0.000000e+00 1112.0
26 TraesCS2A01G528600 chr6D 93.902 738 42 2 95 830 38239740 38240476 0.000000e+00 1110.0
27 TraesCS2A01G528600 chr7A 93.657 741 42 3 96 831 14667361 14668101 0.000000e+00 1103.0
28 TraesCS2A01G528600 chr5D 93.640 739 44 2 96 831 128586684 128585946 0.000000e+00 1101.0
29 TraesCS2A01G528600 chr5D 82.143 168 17 10 4033 4189 351556200 351556035 1.080000e-26 132.0
30 TraesCS2A01G528600 chr3A 93.623 737 47 0 95 831 20933439 20932703 0.000000e+00 1101.0
31 TraesCS2A01G528600 chr3A 91.045 67 5 1 829 895 127172569 127172634 6.620000e-14 89.8
32 TraesCS2A01G528600 chr6A 93.631 738 44 2 96 831 77788182 77787446 0.000000e+00 1099.0
33 TraesCS2A01G528600 chr6A 87.879 66 5 3 4122 4185 57571705 57571769 1.850000e-09 75.0
34 TraesCS2A01G528600 chr1B 91.698 265 21 1 3762 4025 577179570 577179306 2.730000e-97 366.0
35 TraesCS2A01G528600 chr1B 90.909 66 6 0 829 894 618701624 618701559 6.620000e-14 89.8
36 TraesCS2A01G528600 chr3B 83.230 161 19 4 4033 4186 809118057 809117898 1.800000e-29 141.0
37 TraesCS2A01G528600 chr3B 79.191 173 24 10 4027 4189 814152544 814152714 5.080000e-20 110.0
38 TraesCS2A01G528600 chr4B 82.635 167 16 8 4033 4188 574446594 574446758 8.380000e-28 135.0
39 TraesCS2A01G528600 chr4B 90.000 100 9 1 4038 4136 126324725 126324626 1.400000e-25 128.0
40 TraesCS2A01G528600 chr6B 82.530 166 15 9 4033 4185 583445982 583446146 3.010000e-27 134.0
41 TraesCS2A01G528600 chr7B 88.991 109 9 3 4029 4136 592542405 592542511 1.080000e-26 132.0
42 TraesCS2A01G528600 chr5B 81.928 166 18 7 4034 4188 526591534 526591370 3.900000e-26 130.0
43 TraesCS2A01G528600 chr1D 91.045 67 5 1 829 895 108827309 108827244 6.620000e-14 89.8
44 TraesCS2A01G528600 chr4A 90.769 65 6 0 830 894 664483172 664483236 2.380000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G528600 chr2A 747606372 747611171 4799 False 8865.000000 8865 100.000000 1 4800 1 chr2A.!!$F4 4799
1 TraesCS2A01G528600 chr2A 747310087 747310869 782 False 745.000000 745 84.091000 1221 2000 1 chr2A.!!$F3 779
2 TraesCS2A01G528600 chr2D 617388051 617391666 3615 False 848.600000 3570 91.514167 1 4800 6 chr2D.!!$F3 4799
3 TraesCS2A01G528600 chr2D 617150256 617151245 989 True 743.000000 743 80.826000 1016 2000 1 chr2D.!!$R3 984
4 TraesCS2A01G528600 chr2B 753088896 753092576 3680 False 1692.333333 3323 91.552000 889 4797 3 chr2B.!!$F3 3908
5 TraesCS2A01G528600 chr2B 117071628 117072364 736 False 1099.000000 1099 93.631000 96 830 1 chr2B.!!$F2 734
6 TraesCS2A01G528600 chr2B 256325143 256325882 739 True 1099.000000 1099 93.531000 93 831 1 chr2B.!!$R1 738
7 TraesCS2A01G528600 chr3D 583585502 583586246 744 False 1112.000000 1112 93.700000 90 831 1 chr3D.!!$F2 741
8 TraesCS2A01G528600 chr1A 482776021 482776758 737 True 1112.000000 1112 93.911000 95 831 1 chr1A.!!$R1 736
9 TraesCS2A01G528600 chr6D 38239740 38240476 736 False 1110.000000 1110 93.902000 95 830 1 chr6D.!!$F1 735
10 TraesCS2A01G528600 chr7A 14667361 14668101 740 False 1103.000000 1103 93.657000 96 831 1 chr7A.!!$F1 735
11 TraesCS2A01G528600 chr5D 128585946 128586684 738 True 1101.000000 1101 93.640000 96 831 1 chr5D.!!$R1 735
12 TraesCS2A01G528600 chr3A 20932703 20933439 736 True 1101.000000 1101 93.623000 95 831 1 chr3A.!!$R1 736
13 TraesCS2A01G528600 chr6A 77787446 77788182 736 True 1099.000000 1099 93.631000 96 831 1 chr6A.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 842 0.032952 AAAGCAGTTCGCCTACACGA 59.967 50.0 0.0 0.0 44.04 4.35 F
861 872 0.034337 TGAGTGAGTTGGGTAACGCC 59.966 55.0 0.0 0.0 41.71 5.68 F
884 895 0.462403 ACGTGTGGGCGTTAGTGTTT 60.462 50.0 0.0 0.0 43.04 2.83 F
1820 1866 0.622665 AGCCCTGGACCTCATCTTTG 59.377 55.0 0.0 0.0 0.00 2.77 F
3367 3491 0.325110 CTCCTGAGCCAGAGGGAGAA 60.325 60.0 0.0 0.0 45.79 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 2291 0.181114 ATGGCCTCAGCTTGCGAATA 59.819 50.000 3.32 0.00 39.73 1.75 R
2800 2863 0.899720 CTGAAATTGCCATGGCTGGT 59.100 50.000 35.53 19.29 45.10 4.00 R
2864 2927 3.350219 ACTTATGGAAAGACGCATGGT 57.650 42.857 0.00 0.00 0.00 3.55 R
3437 3600 0.033796 AATGGCTGGACATGGACTGG 60.034 55.000 0.00 0.00 0.00 4.00 R
4201 4365 0.523966 GCTAGTCTGTCGTGTGAGCT 59.476 55.000 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.823647 AATACTGTAGAGAAACTCAACATATGG 57.176 33.333 7.80 0.00 32.06 2.74
55 56 1.906574 ACTCAACATATGGACCGGTGT 59.093 47.619 14.63 0.00 0.00 4.16
76 77 1.310904 GATACCGACTCGAAGCCTCT 58.689 55.000 0.00 0.00 0.00 3.69
167 168 0.463654 GTGTGTGGTGTGAGCAGGAA 60.464 55.000 0.00 0.00 0.00 3.36
181 182 4.329545 GGAAGCAGCCCACACGGA 62.330 66.667 0.00 0.00 0.00 4.69
193 194 2.504032 CACGGACTGTGTGTGGGT 59.496 61.111 6.23 0.00 43.88 4.51
210 213 2.311542 TGGGTGGACATTAGAATTGCCT 59.688 45.455 0.00 0.00 0.00 4.75
263 267 5.047519 ACACGCCTAACAAGTACTACTCATT 60.048 40.000 0.00 0.00 0.00 2.57
265 269 6.367969 CACGCCTAACAAGTACTACTCATTTT 59.632 38.462 0.00 0.00 0.00 1.82
347 352 2.534019 CCCGCGGGATGACGATTTG 61.534 63.158 41.82 6.81 37.50 2.32
352 357 1.448985 CGGGATGACGATTTGGTTGT 58.551 50.000 0.00 0.00 35.47 3.32
373 378 2.575735 TCATCCTGGTTGGCAGATGTAA 59.424 45.455 11.86 0.00 35.26 2.41
421 427 9.151471 GTTGTAAAAGCATGACAACTCTATCTA 57.849 33.333 16.17 0.00 46.06 1.98
427 433 8.798859 AAGCATGACAACTCTATCTATTTTGT 57.201 30.769 0.00 0.00 33.12 2.83
697 707 0.598158 GTACCGAGTTGCCACGTTCA 60.598 55.000 0.00 0.00 0.00 3.18
724 735 4.141287 ACTGCAGTTACCATGTAGCAAAA 58.859 39.130 15.25 0.00 34.14 2.44
746 757 7.985634 AAAAATTACAGTTGTCATGTGTGTC 57.014 32.000 0.00 0.00 32.02 3.67
791 802 2.158769 ACTGCAGTTGTCATCCACAAGA 60.159 45.455 15.25 0.00 46.07 3.02
831 842 0.032952 AAAGCAGTTCGCCTACACGA 59.967 50.000 0.00 0.00 44.04 4.35
832 843 0.246635 AAGCAGTTCGCCTACACGAT 59.753 50.000 0.00 0.00 42.54 3.73
833 844 0.179134 AGCAGTTCGCCTACACGATC 60.179 55.000 0.00 0.00 42.54 3.69
834 845 1.146358 GCAGTTCGCCTACACGATCC 61.146 60.000 0.00 0.00 42.54 3.36
835 846 0.172578 CAGTTCGCCTACACGATCCA 59.827 55.000 0.00 0.00 42.54 3.41
836 847 0.456221 AGTTCGCCTACACGATCCAG 59.544 55.000 0.00 0.00 42.54 3.86
837 848 0.454600 GTTCGCCTACACGATCCAGA 59.545 55.000 0.00 0.00 42.54 3.86
838 849 1.067212 GTTCGCCTACACGATCCAGAT 59.933 52.381 0.00 0.00 42.54 2.90
839 850 0.668535 TCGCCTACACGATCCAGATG 59.331 55.000 0.00 0.00 37.09 2.90
840 851 0.385751 CGCCTACACGATCCAGATGT 59.614 55.000 0.00 0.00 34.06 3.06
841 852 1.858091 GCCTACACGATCCAGATGTG 58.142 55.000 0.00 7.99 39.47 3.21
843 854 2.814269 CCTACACGATCCAGATGTGTG 58.186 52.381 18.15 13.42 45.70 3.82
844 855 2.427095 CCTACACGATCCAGATGTGTGA 59.573 50.000 18.15 8.07 45.70 3.58
845 856 2.662006 ACACGATCCAGATGTGTGAG 57.338 50.000 13.64 0.00 44.59 3.51
846 857 1.895798 ACACGATCCAGATGTGTGAGT 59.104 47.619 13.64 0.00 44.59 3.41
847 858 2.265683 CACGATCCAGATGTGTGAGTG 58.734 52.381 0.00 0.00 32.39 3.51
848 859 2.094545 CACGATCCAGATGTGTGAGTGA 60.095 50.000 0.00 0.00 32.39 3.41
849 860 2.165234 ACGATCCAGATGTGTGAGTGAG 59.835 50.000 0.00 0.00 0.00 3.51
850 861 2.165234 CGATCCAGATGTGTGAGTGAGT 59.835 50.000 0.00 0.00 0.00 3.41
851 862 3.367806 CGATCCAGATGTGTGAGTGAGTT 60.368 47.826 0.00 0.00 0.00 3.01
852 863 3.391506 TCCAGATGTGTGAGTGAGTTG 57.608 47.619 0.00 0.00 0.00 3.16
853 864 2.037641 TCCAGATGTGTGAGTGAGTTGG 59.962 50.000 0.00 0.00 0.00 3.77
854 865 2.420642 CAGATGTGTGAGTGAGTTGGG 58.579 52.381 0.00 0.00 0.00 4.12
855 866 2.050144 AGATGTGTGAGTGAGTTGGGT 58.950 47.619 0.00 0.00 0.00 4.51
856 867 3.006859 CAGATGTGTGAGTGAGTTGGGTA 59.993 47.826 0.00 0.00 0.00 3.69
857 868 3.646162 AGATGTGTGAGTGAGTTGGGTAA 59.354 43.478 0.00 0.00 0.00 2.85
858 869 3.188159 TGTGTGAGTGAGTTGGGTAAC 57.812 47.619 0.00 0.00 37.06 2.50
859 870 2.132762 GTGTGAGTGAGTTGGGTAACG 58.867 52.381 0.00 0.00 41.71 3.18
860 871 1.145803 GTGAGTGAGTTGGGTAACGC 58.854 55.000 0.00 0.00 41.71 4.84
861 872 0.034337 TGAGTGAGTTGGGTAACGCC 59.966 55.000 0.00 0.00 41.71 5.68
879 890 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
880 891 1.593209 CACACGTGTGGGCGTTAGT 60.593 57.895 35.65 1.12 43.83 2.24
881 892 1.593209 ACACGTGTGGGCGTTAGTG 60.593 57.895 22.71 0.00 43.83 2.74
882 893 1.593209 CACGTGTGGGCGTTAGTGT 60.593 57.895 7.58 0.00 43.83 3.55
883 894 1.144496 ACGTGTGGGCGTTAGTGTT 59.856 52.632 0.00 0.00 43.04 3.32
884 895 0.462403 ACGTGTGGGCGTTAGTGTTT 60.462 50.000 0.00 0.00 43.04 2.83
885 896 0.658897 CGTGTGGGCGTTAGTGTTTT 59.341 50.000 0.00 0.00 0.00 2.43
886 897 1.333435 CGTGTGGGCGTTAGTGTTTTC 60.333 52.381 0.00 0.00 0.00 2.29
887 898 0.938713 TGTGGGCGTTAGTGTTTTCG 59.061 50.000 0.00 0.00 0.00 3.46
968 984 4.415332 GACCGCGAGCGACTCCAA 62.415 66.667 19.72 0.00 42.83 3.53
971 987 4.753877 CGCGAGCGACTCCAACGA 62.754 66.667 12.58 0.00 42.83 3.85
972 988 2.876645 GCGAGCGACTCCAACGAG 60.877 66.667 0.00 0.00 42.32 4.18
973 989 2.876645 CGAGCGACTCCAACGAGC 60.877 66.667 0.00 0.00 40.03 5.03
974 990 2.507324 GAGCGACTCCAACGAGCC 60.507 66.667 0.00 0.00 40.03 4.70
975 991 4.421479 AGCGACTCCAACGAGCCG 62.421 66.667 0.00 0.00 44.03 5.52
1188 1216 1.891919 GCAAACCCTCGCTCACACA 60.892 57.895 0.00 0.00 0.00 3.72
1189 1217 1.444119 GCAAACCCTCGCTCACACAA 61.444 55.000 0.00 0.00 0.00 3.33
1192 1220 1.407656 AACCCTCGCTCACACAAGGA 61.408 55.000 0.00 0.00 0.00 3.36
1193 1221 1.374758 CCCTCGCTCACACAAGGAC 60.375 63.158 0.00 0.00 0.00 3.85
1194 1222 1.668294 CCTCGCTCACACAAGGACT 59.332 57.895 0.00 0.00 0.00 3.85
1195 1223 0.668706 CCTCGCTCACACAAGGACTG 60.669 60.000 0.00 0.00 0.00 3.51
1217 1246 4.235762 ACACGTGTCCCGCTGCTT 62.236 61.111 17.22 0.00 41.42 3.91
1218 1247 3.414700 CACGTGTCCCGCTGCTTC 61.415 66.667 7.58 0.00 41.42 3.86
1712 1758 2.981302 CCGATGCAGTGGGAGTCA 59.019 61.111 0.00 0.00 0.00 3.41
1815 1861 0.757188 CTACGAGCCCTGGACCTCAT 60.757 60.000 12.64 2.71 0.00 2.90
1820 1866 0.622665 AGCCCTGGACCTCATCTTTG 59.377 55.000 0.00 0.00 0.00 2.77
1861 1913 1.008538 GGCCTGTGTTTGCAGAACG 60.009 57.895 0.00 0.00 38.70 3.95
2006 2062 2.433436 GACCAAATGAAGGTAACCGCT 58.567 47.619 0.00 0.00 40.09 5.52
2041 2100 5.221028 CCATCTTACAAGCAGTGTTTGTTCA 60.221 40.000 27.16 15.09 41.98 3.18
2044 2103 5.414454 TCTTACAAGCAGTGTTTGTTCACTT 59.586 36.000 27.16 7.02 44.92 3.16
2073 2132 3.380954 TGCTTTTCATCTTGTTGTGCTCA 59.619 39.130 0.00 0.00 0.00 4.26
2139 2198 3.670627 GCTTTGACCGTTTGATGGATCAC 60.671 47.826 0.00 0.00 36.36 3.06
2232 2291 0.887387 ATGTGTACAAAAGCGCCCGT 60.887 50.000 2.29 0.00 0.00 5.28
2279 2338 4.597404 ACTACTATAAAGTAAGCCGCCC 57.403 45.455 0.00 0.00 37.75 6.13
2298 2357 2.280628 CCGAAAAGAGACATACCCTGC 58.719 52.381 0.00 0.00 0.00 4.85
2348 2407 2.487762 CAACGTGCTAATGTTGGATGGT 59.512 45.455 0.00 0.00 45.69 3.55
2452 2513 1.344763 GAGATGGGGAAGGATGTACCG 59.655 57.143 0.00 0.00 44.74 4.02
2601 2663 4.734398 TTTTGTCTTGCCACTGTCAAAT 57.266 36.364 0.00 0.00 0.00 2.32
2637 2699 1.280457 AGGAGCCTTTCGATGAGGTT 58.720 50.000 14.67 10.03 36.63 3.50
2646 2708 5.063564 GCCTTTCGATGAGGTTTACTACAAG 59.936 44.000 14.67 0.00 36.63 3.16
2665 2727 4.081917 ACAAGTCATGATGATGCAATGCAA 60.082 37.500 13.45 0.00 43.62 4.08
2775 2838 4.511454 CAGAGAGACCTAGACGAGATGAAG 59.489 50.000 0.00 0.00 0.00 3.02
2796 2859 2.818714 CTGCTGCCAAGAGCCTCG 60.819 66.667 0.00 0.00 42.71 4.63
2800 2863 1.949847 GCTGCCAAGAGCCTCGACTA 61.950 60.000 0.00 0.00 42.71 2.59
2864 2927 9.559732 TCATTACTCTTTCTGAAATTGTTCTGA 57.440 29.630 2.88 8.65 39.24 3.27
2883 2946 3.270027 TGACCATGCGTCTTTCCATAAG 58.730 45.455 13.32 0.00 42.49 1.73
2885 2948 4.081365 TGACCATGCGTCTTTCCATAAGTA 60.081 41.667 13.32 0.00 42.49 2.24
2886 2949 5.036117 ACCATGCGTCTTTCCATAAGTAT 57.964 39.130 0.00 0.00 0.00 2.12
2887 2950 5.057149 ACCATGCGTCTTTCCATAAGTATC 58.943 41.667 0.00 0.00 0.00 2.24
2888 2951 4.452455 CCATGCGTCTTTCCATAAGTATCC 59.548 45.833 0.00 0.00 0.00 2.59
2889 2952 5.300752 CATGCGTCTTTCCATAAGTATCCT 58.699 41.667 0.00 0.00 0.00 3.24
2890 2953 6.455647 CATGCGTCTTTCCATAAGTATCCTA 58.544 40.000 0.00 0.00 0.00 2.94
2891 2954 6.474140 TGCGTCTTTCCATAAGTATCCTAA 57.526 37.500 0.00 0.00 0.00 2.69
2920 3005 6.708054 ACTTCTCTGAGATTGTTTTACAGGTG 59.292 38.462 8.42 0.00 0.00 4.00
2940 3025 0.969894 AGCTCAGCATATACCGGGAC 59.030 55.000 6.32 0.00 0.00 4.46
2949 3034 3.431766 GCATATACCGGGACTGTTTCTGT 60.432 47.826 6.32 0.00 0.00 3.41
2969 3054 1.596477 GCAGGACCATCTCCATCGC 60.596 63.158 0.00 0.00 42.46 4.58
2998 3083 4.015872 TGAACCACCAATGAACTACTCC 57.984 45.455 0.00 0.00 0.00 3.85
3121 3206 2.866872 CGCAAGCTACCCAAATCCA 58.133 52.632 0.00 0.00 0.00 3.41
3146 3231 1.227823 CCAAACACCGCAGACCAGA 60.228 57.895 0.00 0.00 0.00 3.86
3167 3252 2.232756 TCAAGTTCACGCAAGCTACA 57.767 45.000 0.00 0.00 45.62 2.74
3223 3347 3.730761 GCAAGCACCGCAGACCAG 61.731 66.667 0.00 0.00 0.00 4.00
3333 3457 2.186903 CAGCCCTGGTTACGCGAT 59.813 61.111 15.93 0.00 0.00 4.58
3360 3484 0.704664 TACCAGACTCCTGAGCCAGA 59.295 55.000 4.00 0.00 43.02 3.86
3367 3491 0.325110 CTCCTGAGCCAGAGGGAGAA 60.325 60.000 0.00 0.00 45.79 2.87
3385 3509 0.677842 AATACGTGGGATCCGGCTAC 59.322 55.000 5.45 1.47 0.00 3.58
3410 3573 4.447342 CACCCCCAGTCCATGCCC 62.447 72.222 0.00 0.00 0.00 5.36
3412 3575 4.133373 CCCCCAGTCCATGCCCAG 62.133 72.222 0.00 0.00 0.00 4.45
3413 3576 4.828296 CCCCAGTCCATGCCCAGC 62.828 72.222 0.00 0.00 0.00 4.85
3414 3577 4.828296 CCCAGTCCATGCCCAGCC 62.828 72.222 0.00 0.00 0.00 4.85
3415 3578 4.051167 CCAGTCCATGCCCAGCCA 62.051 66.667 0.00 0.00 0.00 4.75
3416 3579 2.277737 CAGTCCATGCCCAGCCAT 59.722 61.111 0.00 0.00 0.00 4.40
3417 3580 1.826921 CAGTCCATGCCCAGCCATC 60.827 63.158 0.00 0.00 0.00 3.51
3418 3581 2.520260 GTCCATGCCCAGCCATCC 60.520 66.667 0.00 0.00 0.00 3.51
3419 3582 4.193893 TCCATGCCCAGCCATCCG 62.194 66.667 0.00 0.00 0.00 4.18
3430 3593 3.849951 CCATCCGGCTACGCACCT 61.850 66.667 0.00 0.00 39.22 4.00
3431 3594 2.586079 CATCCGGCTACGCACCTG 60.586 66.667 0.00 0.00 39.22 4.00
3432 3595 4.530857 ATCCGGCTACGCACCTGC 62.531 66.667 0.00 0.00 39.22 4.85
3436 3599 4.767255 GGCTACGCACCTGCAGCT 62.767 66.667 8.66 0.00 39.27 4.24
3437 3600 3.191539 GCTACGCACCTGCAGCTC 61.192 66.667 8.66 0.00 42.21 4.09
3438 3601 2.510238 CTACGCACCTGCAGCTCC 60.510 66.667 8.66 0.00 42.21 4.70
3439 3602 3.300934 CTACGCACCTGCAGCTCCA 62.301 63.158 8.66 0.00 42.21 3.86
3440 3603 3.300934 TACGCACCTGCAGCTCCAG 62.301 63.158 8.66 0.00 42.21 3.86
3441 3604 4.694233 CGCACCTGCAGCTCCAGT 62.694 66.667 8.66 0.00 42.21 4.00
3442 3605 2.745492 GCACCTGCAGCTCCAGTC 60.745 66.667 8.66 0.00 41.59 3.51
3443 3606 2.046507 CACCTGCAGCTCCAGTCC 60.047 66.667 8.66 0.00 0.00 3.85
3444 3607 2.527624 ACCTGCAGCTCCAGTCCA 60.528 61.111 8.66 0.00 0.00 4.02
3445 3608 1.922369 ACCTGCAGCTCCAGTCCAT 60.922 57.895 8.66 0.00 0.00 3.41
3446 3609 1.451567 CCTGCAGCTCCAGTCCATG 60.452 63.158 8.66 0.00 0.00 3.66
3447 3610 1.298993 CTGCAGCTCCAGTCCATGT 59.701 57.895 0.00 0.00 0.00 3.21
3515 3678 1.065926 CATGGAGCTCTGGCAGTTACA 60.066 52.381 15.27 8.93 41.70 2.41
3548 3711 2.109126 CAGCCTCTTGGTAAGCGCC 61.109 63.158 2.29 0.00 35.27 6.53
3609 3772 8.275015 TGTATTACATACACCCAAGTTGATTG 57.725 34.615 3.87 3.32 40.60 2.67
3610 3773 7.703328 GTATTACATACACCCAAGTTGATTGG 58.297 38.462 3.87 0.00 44.94 3.16
3623 3786 7.026631 CAAGTTGATTGGTAGAAAACTGACA 57.973 36.000 0.00 0.00 35.08 3.58
3625 3788 6.119536 AGTTGATTGGTAGAAAACTGACACA 58.880 36.000 0.00 0.00 30.17 3.72
3633 3796 7.054124 TGGTAGAAAACTGACACATTTCTCTT 58.946 34.615 11.94 0.00 41.24 2.85
3634 3797 7.556275 TGGTAGAAAACTGACACATTTCTCTTT 59.444 33.333 11.94 0.00 41.24 2.52
3635 3798 7.857885 GGTAGAAAACTGACACATTTCTCTTTG 59.142 37.037 11.94 0.00 41.24 2.77
3636 3799 6.799512 AGAAAACTGACACATTTCTCTTTGG 58.200 36.000 5.33 0.00 38.65 3.28
3637 3800 6.603201 AGAAAACTGACACATTTCTCTTTGGA 59.397 34.615 5.33 0.00 38.65 3.53
3638 3801 5.757850 AACTGACACATTTCTCTTTGGAC 57.242 39.130 0.00 0.00 0.00 4.02
3639 3802 4.137543 ACTGACACATTTCTCTTTGGACC 58.862 43.478 0.00 0.00 0.00 4.46
3640 3803 4.136796 CTGACACATTTCTCTTTGGACCA 58.863 43.478 0.00 0.00 0.00 4.02
3641 3804 4.531854 TGACACATTTCTCTTTGGACCAA 58.468 39.130 1.69 1.69 0.00 3.67
3642 3805 5.139727 TGACACATTTCTCTTTGGACCAAT 58.860 37.500 7.99 0.00 0.00 3.16
3643 3806 5.009911 TGACACATTTCTCTTTGGACCAATG 59.990 40.000 7.99 10.81 0.00 2.82
3670 3833 1.154654 GCGCTACACAAACACGAGC 60.155 57.895 0.00 0.00 0.00 5.03
3845 4008 7.831691 TCAAGAGGATACCAGAGAAGATTAG 57.168 40.000 0.00 0.00 37.17 1.73
3846 4009 7.587258 TCAAGAGGATACCAGAGAAGATTAGA 58.413 38.462 0.00 0.00 37.17 2.10
3847 4010 8.231007 TCAAGAGGATACCAGAGAAGATTAGAT 58.769 37.037 0.00 0.00 37.17 1.98
3848 4011 9.527157 CAAGAGGATACCAGAGAAGATTAGATA 57.473 37.037 0.00 0.00 37.17 1.98
3852 4015 8.798402 AGGATACCAGAGAAGATTAGATAAACG 58.202 37.037 0.00 0.00 37.17 3.60
3853 4016 8.578151 GGATACCAGAGAAGATTAGATAAACGT 58.422 37.037 0.00 0.00 0.00 3.99
3854 4017 9.400638 GATACCAGAGAAGATTAGATAAACGTG 57.599 37.037 0.00 0.00 0.00 4.49
3855 4018 7.406031 ACCAGAGAAGATTAGATAAACGTGA 57.594 36.000 0.00 0.00 0.00 4.35
3856 4019 7.259161 ACCAGAGAAGATTAGATAAACGTGAC 58.741 38.462 0.00 0.00 0.00 3.67
3857 4020 6.697892 CCAGAGAAGATTAGATAAACGTGACC 59.302 42.308 0.00 0.00 0.00 4.02
3858 4021 7.416890 CCAGAGAAGATTAGATAAACGTGACCT 60.417 40.741 0.00 0.00 0.00 3.85
3859 4022 8.622157 CAGAGAAGATTAGATAAACGTGACCTA 58.378 37.037 0.00 0.00 0.00 3.08
3882 4045 5.473066 ACATGCCTCTGTAATTTGCTTTT 57.527 34.783 0.00 0.00 0.00 2.27
3916 4079 6.391227 AGGAAACTGTTTCTGTAATTGTGG 57.609 37.500 26.93 0.00 41.13 4.17
3969 4132 2.852449 TGGCCTTTCCTGGATTATCAGT 59.148 45.455 3.32 0.00 35.26 3.41
3971 4134 4.141482 TGGCCTTTCCTGGATTATCAGTAC 60.141 45.833 3.32 0.00 35.26 2.73
3973 4136 5.307196 GGCCTTTCCTGGATTATCAGTACTA 59.693 44.000 0.00 0.00 33.14 1.82
3979 4142 9.542462 TTTCCTGGATTATCAGTACTATTTTCG 57.458 33.333 0.00 0.00 33.14 3.46
4000 4164 8.673626 TTTCGTAATTGCTTGAGAAAATGATC 57.326 30.769 0.00 0.00 0.00 2.92
4001 4165 7.615582 TCGTAATTGCTTGAGAAAATGATCT 57.384 32.000 0.00 0.00 0.00 2.75
4027 4191 5.426689 AGTCAGTTTCAGATCAATGCCTA 57.573 39.130 0.00 0.00 0.00 3.93
4028 4192 5.999044 AGTCAGTTTCAGATCAATGCCTAT 58.001 37.500 0.00 0.00 0.00 2.57
4029 4193 7.129457 AGTCAGTTTCAGATCAATGCCTATA 57.871 36.000 0.00 0.00 0.00 1.31
4030 4194 7.568349 AGTCAGTTTCAGATCAATGCCTATAA 58.432 34.615 0.00 0.00 0.00 0.98
4031 4195 7.497249 AGTCAGTTTCAGATCAATGCCTATAAC 59.503 37.037 0.00 0.00 0.00 1.89
4033 4197 7.994911 TCAGTTTCAGATCAATGCCTATAACAT 59.005 33.333 0.00 0.00 0.00 2.71
4034 4198 9.276590 CAGTTTCAGATCAATGCCTATAACATA 57.723 33.333 0.00 0.00 0.00 2.29
4035 4199 9.277783 AGTTTCAGATCAATGCCTATAACATAC 57.722 33.333 0.00 0.00 0.00 2.39
4036 4200 9.277783 GTTTCAGATCAATGCCTATAACATACT 57.722 33.333 0.00 0.00 0.00 2.12
4037 4201 9.851686 TTTCAGATCAATGCCTATAACATACTT 57.148 29.630 0.00 0.00 0.00 2.24
4039 4203 8.097038 TCAGATCAATGCCTATAACATACTTCC 58.903 37.037 0.00 0.00 0.00 3.46
4040 4204 7.335422 CAGATCAATGCCTATAACATACTTCCC 59.665 40.741 0.00 0.00 0.00 3.97
4041 4205 6.763715 TCAATGCCTATAACATACTTCCCT 57.236 37.500 0.00 0.00 0.00 4.20
4042 4206 6.769512 TCAATGCCTATAACATACTTCCCTC 58.230 40.000 0.00 0.00 0.00 4.30
4043 4207 6.558775 TCAATGCCTATAACATACTTCCCTCT 59.441 38.462 0.00 0.00 0.00 3.69
4044 4208 5.808366 TGCCTATAACATACTTCCCTCTG 57.192 43.478 0.00 0.00 0.00 3.35
4045 4209 5.216622 TGCCTATAACATACTTCCCTCTGT 58.783 41.667 0.00 0.00 0.00 3.41
4046 4210 5.665812 TGCCTATAACATACTTCCCTCTGTT 59.334 40.000 0.00 0.00 36.00 3.16
4047 4211 6.183360 TGCCTATAACATACTTCCCTCTGTTC 60.183 42.308 0.00 0.00 34.02 3.18
4048 4212 6.741801 GCCTATAACATACTTCCCTCTGTTCC 60.742 46.154 0.00 0.00 34.02 3.62
4049 4213 6.555360 CCTATAACATACTTCCCTCTGTTCCT 59.445 42.308 0.00 0.00 34.02 3.36
4050 4214 7.728981 CCTATAACATACTTCCCTCTGTTCCTA 59.271 40.741 0.00 0.00 34.02 2.94
4051 4215 7.989947 ATAACATACTTCCCTCTGTTCCTAA 57.010 36.000 0.00 0.00 34.02 2.69
4052 4216 6.697641 AACATACTTCCCTCTGTTCCTAAA 57.302 37.500 0.00 0.00 0.00 1.85
4053 4217 6.893020 ACATACTTCCCTCTGTTCCTAAAT 57.107 37.500 0.00 0.00 0.00 1.40
4054 4218 7.989947 ACATACTTCCCTCTGTTCCTAAATA 57.010 36.000 0.00 0.00 0.00 1.40
4055 4219 8.568617 ACATACTTCCCTCTGTTCCTAAATAT 57.431 34.615 0.00 0.00 0.00 1.28
4056 4220 9.670442 ACATACTTCCCTCTGTTCCTAAATATA 57.330 33.333 0.00 0.00 0.00 0.86
4059 4223 7.510407 ACTTCCCTCTGTTCCTAAATATAAGC 58.490 38.462 0.00 0.00 0.00 3.09
4060 4224 6.435292 TCCCTCTGTTCCTAAATATAAGCC 57.565 41.667 0.00 0.00 0.00 4.35
4061 4225 5.309806 TCCCTCTGTTCCTAAATATAAGCCC 59.690 44.000 0.00 0.00 0.00 5.19
4062 4226 5.310857 CCCTCTGTTCCTAAATATAAGCCCT 59.689 44.000 0.00 0.00 0.00 5.19
4063 4227 6.183361 CCCTCTGTTCCTAAATATAAGCCCTT 60.183 42.308 0.00 0.00 0.00 3.95
4064 4228 7.290813 CCTCTGTTCCTAAATATAAGCCCTTT 58.709 38.462 0.00 0.00 0.00 3.11
4065 4229 7.780271 CCTCTGTTCCTAAATATAAGCCCTTTT 59.220 37.037 0.00 0.00 0.00 2.27
4066 4230 9.847224 CTCTGTTCCTAAATATAAGCCCTTTTA 57.153 33.333 0.00 0.00 0.00 1.52
4082 4246 8.655935 AGCCCTTTTATAGATTTCAATATGGG 57.344 34.615 0.00 0.00 0.00 4.00
4083 4247 7.323420 GCCCTTTTATAGATTTCAATATGGGC 58.677 38.462 0.00 0.00 45.34 5.36
4084 4248 8.655935 CCCTTTTATAGATTTCAATATGGGCT 57.344 34.615 0.00 0.00 0.00 5.19
4085 4249 9.753674 CCCTTTTATAGATTTCAATATGGGCTA 57.246 33.333 0.00 0.00 0.00 3.93
4091 4255 8.948631 ATAGATTTCAATATGGGCTACATACG 57.051 34.615 4.22 0.00 44.41 3.06
4092 4256 6.173339 AGATTTCAATATGGGCTACATACGG 58.827 40.000 4.22 1.38 44.41 4.02
4093 4257 3.973206 TCAATATGGGCTACATACGGG 57.027 47.619 4.22 0.00 44.41 5.28
4094 4258 2.569853 TCAATATGGGCTACATACGGGG 59.430 50.000 4.22 0.00 44.41 5.73
4095 4259 0.909623 ATATGGGCTACATACGGGGC 59.090 55.000 4.22 0.00 44.41 5.80
4096 4260 0.472161 TATGGGCTACATACGGGGCA 60.472 55.000 0.00 0.00 41.03 5.36
4097 4261 1.349542 ATGGGCTACATACGGGGCAA 61.350 55.000 0.00 0.00 38.26 4.52
4098 4262 1.225148 GGGCTACATACGGGGCAAA 59.775 57.895 0.00 0.00 0.00 3.68
4099 4263 0.394625 GGGCTACATACGGGGCAAAA 60.395 55.000 0.00 0.00 0.00 2.44
4100 4264 1.687563 GGCTACATACGGGGCAAAAT 58.312 50.000 0.00 0.00 0.00 1.82
4101 4265 1.336755 GGCTACATACGGGGCAAAATG 59.663 52.381 0.00 0.00 0.00 2.32
4102 4266 2.294074 GCTACATACGGGGCAAAATGA 58.706 47.619 0.00 0.00 0.00 2.57
4103 4267 2.290641 GCTACATACGGGGCAAAATGAG 59.709 50.000 0.00 0.00 0.00 2.90
4104 4268 2.507407 ACATACGGGGCAAAATGAGT 57.493 45.000 0.00 0.00 0.00 3.41
4105 4269 2.091541 ACATACGGGGCAAAATGAGTG 58.908 47.619 0.00 0.00 0.00 3.51
4106 4270 2.290641 ACATACGGGGCAAAATGAGTGA 60.291 45.455 0.00 0.00 0.00 3.41
4107 4271 2.570415 TACGGGGCAAAATGAGTGAA 57.430 45.000 0.00 0.00 0.00 3.18
4108 4272 1.923356 ACGGGGCAAAATGAGTGAAT 58.077 45.000 0.00 0.00 0.00 2.57
4109 4273 1.818674 ACGGGGCAAAATGAGTGAATC 59.181 47.619 0.00 0.00 0.00 2.52
4110 4274 2.094675 CGGGGCAAAATGAGTGAATCT 58.905 47.619 0.00 0.00 0.00 2.40
4111 4275 3.278574 CGGGGCAAAATGAGTGAATCTA 58.721 45.455 0.00 0.00 0.00 1.98
4112 4276 3.065371 CGGGGCAAAATGAGTGAATCTAC 59.935 47.826 0.00 0.00 0.00 2.59
4113 4277 4.016444 GGGGCAAAATGAGTGAATCTACA 58.984 43.478 0.00 0.00 0.00 2.74
4114 4278 4.142381 GGGGCAAAATGAGTGAATCTACAC 60.142 45.833 0.00 0.00 40.60 2.90
4115 4279 4.142381 GGGCAAAATGAGTGAATCTACACC 60.142 45.833 0.00 0.00 41.12 4.16
4116 4280 4.142381 GGCAAAATGAGTGAATCTACACCC 60.142 45.833 0.00 0.00 41.12 4.61
4117 4281 4.702131 GCAAAATGAGTGAATCTACACCCT 59.298 41.667 0.00 0.00 41.12 4.34
4118 4282 5.880332 GCAAAATGAGTGAATCTACACCCTA 59.120 40.000 0.00 0.00 41.12 3.53
4119 4283 6.374333 GCAAAATGAGTGAATCTACACCCTAA 59.626 38.462 0.00 0.00 41.12 2.69
4120 4284 7.094377 GCAAAATGAGTGAATCTACACCCTAAA 60.094 37.037 0.00 0.00 41.12 1.85
4121 4285 8.792633 CAAAATGAGTGAATCTACACCCTAAAA 58.207 33.333 0.00 0.00 41.12 1.52
4122 4286 9.533831 AAAATGAGTGAATCTACACCCTAAAAT 57.466 29.630 0.00 0.00 41.12 1.82
4124 4288 9.614792 AATGAGTGAATCTACACCCTAAAATAC 57.385 33.333 0.00 0.00 41.12 1.89
4125 4289 8.141298 TGAGTGAATCTACACCCTAAAATACA 57.859 34.615 0.00 0.00 41.12 2.29
4126 4290 8.768397 TGAGTGAATCTACACCCTAAAATACAT 58.232 33.333 0.00 0.00 41.12 2.29
4127 4291 9.262358 GAGTGAATCTACACCCTAAAATACATC 57.738 37.037 0.00 0.00 41.12 3.06
4128 4292 8.993424 AGTGAATCTACACCCTAAAATACATCT 58.007 33.333 0.00 0.00 41.12 2.90
4179 4343 7.803279 AAAGCCTTATATTTAGAAACGGAGG 57.197 36.000 0.00 0.00 0.00 4.30
4180 4344 5.866207 AGCCTTATATTTAGAAACGGAGGG 58.134 41.667 0.00 0.00 0.00 4.30
4181 4345 5.605488 AGCCTTATATTTAGAAACGGAGGGA 59.395 40.000 0.00 0.00 0.00 4.20
4182 4346 5.932883 GCCTTATATTTAGAAACGGAGGGAG 59.067 44.000 0.00 0.00 0.00 4.30
4183 4347 6.464039 GCCTTATATTTAGAAACGGAGGGAGT 60.464 42.308 0.00 0.00 0.00 3.85
4184 4348 7.256083 GCCTTATATTTAGAAACGGAGGGAGTA 60.256 40.741 0.00 0.00 0.00 2.59
4185 4349 8.087136 CCTTATATTTAGAAACGGAGGGAGTAC 58.913 40.741 0.00 0.00 0.00 2.73
4186 4350 8.773033 TTATATTTAGAAACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
4187 4351 7.672122 ATATTTAGAAACGGAGGGAGTACTT 57.328 36.000 0.00 0.00 0.00 2.24
4188 4352 8.773033 ATATTTAGAAACGGAGGGAGTACTTA 57.227 34.615 0.00 0.00 0.00 2.24
4189 4353 6.521151 TTTAGAAACGGAGGGAGTACTTAG 57.479 41.667 0.00 0.00 0.00 2.18
4190 4354 4.313020 AGAAACGGAGGGAGTACTTAGA 57.687 45.455 0.00 0.00 0.00 2.10
4201 4365 4.838986 GGGAGTACTTAGAGGATGCCATAA 59.161 45.833 0.00 0.00 0.00 1.90
4213 4378 0.320050 TGCCATAAGCTCACACGACA 59.680 50.000 0.00 0.00 44.23 4.35
4224 4389 0.734253 CACACGACAGACTAGCCTGC 60.734 60.000 5.89 0.00 37.68 4.85
4229 4394 1.719600 GACAGACTAGCCTGCAACAG 58.280 55.000 5.89 0.00 37.68 3.16
4230 4395 1.273606 GACAGACTAGCCTGCAACAGA 59.726 52.381 5.89 0.00 37.68 3.41
4231 4396 1.274728 ACAGACTAGCCTGCAACAGAG 59.725 52.381 5.89 0.00 37.68 3.35
4238 4403 2.843701 AGCCTGCAACAGAGTATATGC 58.156 47.619 0.00 0.00 39.22 3.14
4248 4413 6.536582 GCAACAGAGTATATGCCGATGATAAT 59.463 38.462 0.00 0.00 32.73 1.28
4249 4414 7.706607 GCAACAGAGTATATGCCGATGATAATA 59.293 37.037 0.00 0.00 32.73 0.98
4250 4415 9.025020 CAACAGAGTATATGCCGATGATAATAC 57.975 37.037 0.00 0.00 0.00 1.89
4251 4416 8.526667 ACAGAGTATATGCCGATGATAATACT 57.473 34.615 0.00 0.00 0.00 2.12
4252 4417 8.409371 ACAGAGTATATGCCGATGATAATACTG 58.591 37.037 0.00 0.00 0.00 2.74
4355 4520 3.675698 GTGATCGAGTTCCACTTGTCTTC 59.324 47.826 0.00 0.00 31.48 2.87
4359 4524 2.224066 CGAGTTCCACTTGTCTTCCACT 60.224 50.000 0.00 0.00 0.00 4.00
4382 4547 4.335647 CAGACCGCCAGCCAGGTT 62.336 66.667 0.00 0.00 41.51 3.50
4389 4554 3.089838 CCAGCCAGGTTGATGGGA 58.910 61.111 4.51 0.00 40.97 4.37
4390 4555 1.383799 CCAGCCAGGTTGATGGGAA 59.616 57.895 4.51 0.00 40.97 3.97
4391 4556 0.967380 CCAGCCAGGTTGATGGGAAC 60.967 60.000 4.51 0.00 40.97 3.62
4430 4595 1.153086 CCTGCCCTTGATTCTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
4441 4606 2.288457 TGATTCTCCGGATCGCTTCATC 60.288 50.000 3.57 0.00 0.00 2.92
4446 4611 1.688735 TCCGGATCGCTTCATCAGAAT 59.311 47.619 0.00 0.00 32.31 2.40
4509 4674 3.307782 CCTGCAAAACAGCAAAACTCTTG 59.692 43.478 0.00 0.00 45.78 3.02
4528 4693 8.357796 ACTCTTGATATCAATCATGTAACACG 57.642 34.615 18.26 3.00 41.73 4.49
4544 4709 3.414549 ACACGACACAAACAACATTCC 57.585 42.857 0.00 0.00 0.00 3.01
4548 4713 2.098280 CGACACAAACAACATTCCCACA 59.902 45.455 0.00 0.00 0.00 4.17
4561 4726 2.068837 TCCCACACGACAATTACGAC 57.931 50.000 10.40 0.00 34.70 4.34
4708 4873 3.465403 CCTCTGGCCCGACCTCTG 61.465 72.222 0.00 0.00 40.22 3.35
4756 4921 1.873591 CTTTGTGGGAAACTGTCCTCG 59.126 52.381 0.00 0.00 46.92 4.63
4797 4962 5.181245 CGAGGAACCATAAAACACAGTTCAT 59.819 40.000 0.00 0.00 38.83 2.57
4798 4963 6.331369 AGGAACCATAAAACACAGTTCATG 57.669 37.500 0.00 0.00 38.83 3.07
4799 4964 6.068010 AGGAACCATAAAACACAGTTCATGA 58.932 36.000 0.00 0.00 38.83 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.516546 TTCTCTACAGTATTACTCTCTTGTTGA 57.483 33.333 0.00 0.00 0.00 3.18
13 14 9.742144 TGAGTTTCTCTACAGTATTACTCTCTT 57.258 33.333 0.00 0.00 33.67 2.85
16 17 9.298250 TGTTGAGTTTCTCTACAGTATTACTCT 57.702 33.333 9.21 0.00 40.15 3.24
55 56 0.463295 AGGCTTCGAGTCGGTATCGA 60.463 55.000 13.54 0.00 46.72 3.59
76 77 2.290450 CCTTAAAAAGGGGGACGTGCTA 60.290 50.000 7.11 0.00 45.27 3.49
181 182 0.550914 AATGTCCACCCACACACAGT 59.449 50.000 0.00 0.00 0.00 3.55
193 194 4.188462 CGTGTAGGCAATTCTAATGTCCA 58.812 43.478 0.00 0.00 0.00 4.02
246 249 7.163441 GGGGTGAAAATGAGTAGTACTTGTTA 58.837 38.462 0.00 0.00 0.00 2.41
289 293 1.883275 CAGGACGTGTGGGCATTTTTA 59.117 47.619 0.00 0.00 0.00 1.52
347 352 0.539438 TGCCAACCAGGATGACAACC 60.539 55.000 0.00 0.00 39.69 3.77
352 357 0.994247 ACATCTGCCAACCAGGATGA 59.006 50.000 0.00 0.00 42.05 2.92
373 378 1.494721 ACACTTGCCATCCCGGATAAT 59.505 47.619 0.73 0.00 36.56 1.28
436 442 8.420374 ACTACCATAAATTAGACATGACAACG 57.580 34.615 0.00 0.00 0.00 4.10
573 579 6.619744 TGTGATTAACAATACATGGCAACTG 58.380 36.000 0.00 0.00 35.24 3.16
648 654 4.082571 GGCAACTGTGATTCTTTGCTACAT 60.083 41.667 5.25 0.00 43.20 2.29
724 735 6.942532 AGACACACATGACAACTGTAATTT 57.057 33.333 0.00 0.00 0.00 1.82
728 739 4.557895 CGGTAGACACACATGACAACTGTA 60.558 45.833 0.00 0.00 0.00 2.74
736 747 2.609491 GCAACTCGGTAGACACACATGA 60.609 50.000 0.00 0.00 0.00 3.07
791 802 2.353323 TCGCTCACACGACACTACTAT 58.647 47.619 0.00 0.00 37.09 2.12
825 836 3.089284 ACTCACACATCTGGATCGTGTA 58.911 45.455 13.82 6.76 41.79 2.90
831 842 3.307269 CCAACTCACTCACACATCTGGAT 60.307 47.826 0.00 0.00 0.00 3.41
832 843 2.037641 CCAACTCACTCACACATCTGGA 59.962 50.000 0.00 0.00 0.00 3.86
833 844 2.420642 CCAACTCACTCACACATCTGG 58.579 52.381 0.00 0.00 0.00 3.86
834 845 2.224378 ACCCAACTCACTCACACATCTG 60.224 50.000 0.00 0.00 0.00 2.90
835 846 2.050144 ACCCAACTCACTCACACATCT 58.950 47.619 0.00 0.00 0.00 2.90
836 847 2.550830 ACCCAACTCACTCACACATC 57.449 50.000 0.00 0.00 0.00 3.06
837 848 3.740115 GTTACCCAACTCACTCACACAT 58.260 45.455 0.00 0.00 0.00 3.21
838 849 2.482316 CGTTACCCAACTCACTCACACA 60.482 50.000 0.00 0.00 32.09 3.72
839 850 2.132762 CGTTACCCAACTCACTCACAC 58.867 52.381 0.00 0.00 32.09 3.82
840 851 1.539496 GCGTTACCCAACTCACTCACA 60.539 52.381 0.00 0.00 32.09 3.58
841 852 1.145803 GCGTTACCCAACTCACTCAC 58.854 55.000 0.00 0.00 32.09 3.51
842 853 0.034337 GGCGTTACCCAACTCACTCA 59.966 55.000 0.00 0.00 32.09 3.41
843 854 2.836944 GGCGTTACCCAACTCACTC 58.163 57.895 0.00 0.00 32.09 3.51
853 864 2.280321 ACACGTGTGGGCGTTACC 60.280 61.111 22.71 0.00 43.83 2.85
854 865 2.932905 CACACGTGTGGGCGTTAC 59.067 61.111 35.65 0.00 43.83 2.50
866 877 0.658897 AAAACACTAACGCCCACACG 59.341 50.000 0.00 0.00 39.50 4.49
867 878 1.333435 CGAAAACACTAACGCCCACAC 60.333 52.381 0.00 0.00 0.00 3.82
868 879 0.938713 CGAAAACACTAACGCCCACA 59.061 50.000 0.00 0.00 0.00 4.17
869 880 0.385098 GCGAAAACACTAACGCCCAC 60.385 55.000 0.00 0.00 44.27 4.61
870 881 1.943293 GCGAAAACACTAACGCCCA 59.057 52.632 0.00 0.00 44.27 5.36
871 882 4.832767 GCGAAAACACTAACGCCC 57.167 55.556 0.00 0.00 44.27 6.13
874 885 6.854381 AGGATTAAAAAGCGAAAACACTAACG 59.146 34.615 0.00 0.00 0.00 3.18
875 886 8.074370 AGAGGATTAAAAAGCGAAAACACTAAC 58.926 33.333 0.00 0.00 0.00 2.34
876 887 8.161699 AGAGGATTAAAAAGCGAAAACACTAA 57.838 30.769 0.00 0.00 0.00 2.24
877 888 7.359765 CGAGAGGATTAAAAAGCGAAAACACTA 60.360 37.037 0.00 0.00 0.00 2.74
878 889 6.565999 CGAGAGGATTAAAAAGCGAAAACACT 60.566 38.462 0.00 0.00 0.00 3.55
879 890 5.564127 CGAGAGGATTAAAAAGCGAAAACAC 59.436 40.000 0.00 0.00 0.00 3.32
880 891 5.685841 CGAGAGGATTAAAAAGCGAAAACA 58.314 37.500 0.00 0.00 0.00 2.83
881 892 4.553815 GCGAGAGGATTAAAAAGCGAAAAC 59.446 41.667 0.00 0.00 0.00 2.43
882 893 4.379082 GGCGAGAGGATTAAAAAGCGAAAA 60.379 41.667 0.00 0.00 0.00 2.29
883 894 3.126343 GGCGAGAGGATTAAAAAGCGAAA 59.874 43.478 0.00 0.00 0.00 3.46
884 895 2.676342 GGCGAGAGGATTAAAAAGCGAA 59.324 45.455 0.00 0.00 0.00 4.70
885 896 2.093658 AGGCGAGAGGATTAAAAAGCGA 60.094 45.455 0.00 0.00 0.00 4.93
886 897 2.280628 AGGCGAGAGGATTAAAAAGCG 58.719 47.619 0.00 0.00 0.00 4.68
887 898 4.415735 CAAAGGCGAGAGGATTAAAAAGC 58.584 43.478 0.00 0.00 0.00 3.51
965 981 1.957186 TTTCGGTTCGGCTCGTTGG 60.957 57.895 0.00 0.00 0.00 3.77
967 983 0.601841 ATGTTTCGGTTCGGCTCGTT 60.602 50.000 0.00 0.00 0.00 3.85
968 984 1.005394 ATGTTTCGGTTCGGCTCGT 60.005 52.632 0.00 0.00 0.00 4.18
970 986 0.442699 GTGATGTTTCGGTTCGGCTC 59.557 55.000 0.00 0.00 0.00 4.70
971 987 0.953960 GGTGATGTTTCGGTTCGGCT 60.954 55.000 0.00 0.00 0.00 5.52
972 988 1.500396 GGTGATGTTTCGGTTCGGC 59.500 57.895 0.00 0.00 0.00 5.54
973 989 0.668096 TCGGTGATGTTTCGGTTCGG 60.668 55.000 0.00 0.00 0.00 4.30
974 990 0.437295 GTCGGTGATGTTTCGGTTCG 59.563 55.000 0.00 0.00 0.00 3.95
975 991 0.794473 GGTCGGTGATGTTTCGGTTC 59.206 55.000 0.00 0.00 0.00 3.62
1188 1216 1.069765 CACGTGTCCAGCAGTCCTT 59.930 57.895 7.58 0.00 0.00 3.36
1189 1217 2.088674 GACACGTGTCCAGCAGTCCT 62.089 60.000 33.62 1.65 39.07 3.85
1217 1246 1.002201 ACGTCGAAGTCTGGAGAGAGA 59.998 52.381 0.00 0.00 0.00 3.10
1218 1247 1.395608 GACGTCGAAGTCTGGAGAGAG 59.604 57.143 22.04 0.00 38.09 3.20
1712 1758 0.749454 GGACATGCGGGAAGATTGCT 60.749 55.000 0.00 0.00 0.00 3.91
1815 1861 0.810648 GCATTGCCATCGACCAAAGA 59.189 50.000 0.00 0.00 0.00 2.52
1820 1866 2.824041 ACCGCATTGCCATCGACC 60.824 61.111 2.41 0.00 0.00 4.79
1861 1913 4.162320 TCATCATAACCTCACACTCCTTCC 59.838 45.833 0.00 0.00 0.00 3.46
2006 2062 2.607568 TAAGATGGGCGGGGTTGCA 61.608 57.895 0.00 0.00 36.28 4.08
2041 2100 6.585416 ACAAGATGAAAAGCAAATTCCAAGT 58.415 32.000 0.00 0.00 0.00 3.16
2044 2103 6.258287 CACAACAAGATGAAAAGCAAATTCCA 59.742 34.615 0.00 0.00 0.00 3.53
2073 2132 2.053865 CAATCCCGGCACCTGCAAT 61.054 57.895 0.00 0.00 44.36 3.56
2085 2144 3.751698 AGTTGTTCTTACGAAGCAATCCC 59.248 43.478 0.00 0.00 0.00 3.85
2109 2168 2.664851 CGGTCAAAGCGCTCACCA 60.665 61.111 24.93 4.44 30.39 4.17
2139 2198 2.223456 TGTGTTGAAAATCTGTGTGGCG 60.223 45.455 0.00 0.00 0.00 5.69
2232 2291 0.181114 ATGGCCTCAGCTTGCGAATA 59.819 50.000 3.32 0.00 39.73 1.75
2279 2338 3.252974 AGCAGGGTATGTCTCTTTTCG 57.747 47.619 0.00 0.00 0.00 3.46
2329 2388 2.489938 ACCATCCAACATTAGCACGT 57.510 45.000 0.00 0.00 0.00 4.49
2330 2389 3.848272 AAACCATCCAACATTAGCACG 57.152 42.857 0.00 0.00 0.00 5.34
2452 2513 2.105006 TCTGATCAACTGCTTCAGCC 57.895 50.000 0.00 0.00 41.18 4.85
2601 2663 3.754965 CTCCTTTGAACCAGGAATGTCA 58.245 45.455 0.00 0.00 40.09 3.58
2607 2669 1.149101 AAGGCTCCTTTGAACCAGGA 58.851 50.000 0.00 0.00 38.18 3.86
2637 2699 7.467675 GCATTGCATCATCATGACTTGTAGTAA 60.468 37.037 3.15 0.00 30.57 2.24
2646 2708 2.787129 CGTTGCATTGCATCATCATGAC 59.213 45.455 12.95 4.03 38.76 3.06
2665 2727 1.450669 ACGTGAAGTGGCCAAACGT 60.451 52.632 23.67 23.67 42.20 3.99
2775 2838 3.797546 GCTCTTGGCAGCAGACGC 61.798 66.667 0.00 0.00 39.43 5.19
2779 2842 2.818714 CGAGGCTCTTGGCAGCAG 60.819 66.667 13.50 0.00 41.65 4.24
2796 2859 1.767759 AATTGCCATGGCTGGTAGTC 58.232 50.000 35.53 6.53 45.10 2.59
2800 2863 0.899720 CTGAAATTGCCATGGCTGGT 59.100 50.000 35.53 19.29 45.10 4.00
2833 2896 7.502226 ACAATTTCAGAAAGAGTAATGACACCA 59.498 33.333 1.28 0.00 0.00 4.17
2844 2907 6.624352 TGGTCAGAACAATTTCAGAAAGAG 57.376 37.500 1.28 0.00 33.72 2.85
2864 2927 3.350219 ACTTATGGAAAGACGCATGGT 57.650 42.857 0.00 0.00 0.00 3.55
2883 2946 7.817418 ATCTCAGAGAAGTCAGTTAGGATAC 57.183 40.000 3.63 0.00 0.00 2.24
2885 2948 6.667414 ACAATCTCAGAGAAGTCAGTTAGGAT 59.333 38.462 3.63 0.00 0.00 3.24
2886 2949 6.013379 ACAATCTCAGAGAAGTCAGTTAGGA 58.987 40.000 3.63 0.00 0.00 2.94
2887 2950 6.279513 ACAATCTCAGAGAAGTCAGTTAGG 57.720 41.667 3.63 0.00 0.00 2.69
2888 2951 8.600449 AAAACAATCTCAGAGAAGTCAGTTAG 57.400 34.615 3.63 0.00 0.00 2.34
2889 2952 9.477484 GTAAAACAATCTCAGAGAAGTCAGTTA 57.523 33.333 3.63 4.30 0.00 2.24
2890 2953 7.987458 TGTAAAACAATCTCAGAGAAGTCAGTT 59.013 33.333 3.63 2.80 0.00 3.16
2891 2954 7.500992 TGTAAAACAATCTCAGAGAAGTCAGT 58.499 34.615 3.63 0.00 0.00 3.41
2920 3005 1.067495 GTCCCGGTATATGCTGAGCTC 60.067 57.143 6.82 6.82 0.00 4.09
2940 3025 0.179020 TGGTCCTGCCACAGAAACAG 60.179 55.000 0.00 0.00 43.61 3.16
2965 3050 1.074775 TGGTTCAAAGCCTGGCGAT 59.925 52.632 13.96 3.31 0.00 4.58
2969 3054 1.001181 CATTGGTGGTTCAAAGCCTGG 59.999 52.381 0.00 0.00 0.00 4.45
2998 3083 1.402968 GCATGCACACCTTGTCCATAG 59.597 52.381 14.21 0.00 0.00 2.23
3028 3113 1.952367 GCATTTGAGTAGCCAGCCTGT 60.952 52.381 0.00 0.00 0.00 4.00
3030 3115 0.622665 AGCATTTGAGTAGCCAGCCT 59.377 50.000 0.00 0.00 0.00 4.58
3115 3200 3.443681 CGGTGTTTGGATAGCTTGGATTT 59.556 43.478 0.00 0.00 0.00 2.17
3121 3206 1.003118 TCTGCGGTGTTTGGATAGCTT 59.997 47.619 0.00 0.00 0.00 3.74
3146 3231 3.058914 GTGTAGCTTGCGTGAACTTGATT 60.059 43.478 0.00 0.00 0.00 2.57
3167 3252 2.281070 CTGGTCTGCGGTGCTTGT 60.281 61.111 0.00 0.00 0.00 3.16
3217 3341 0.176680 CGTAGGCTTGATGCTGGTCT 59.823 55.000 0.00 0.00 42.39 3.85
3218 3342 0.811616 CCGTAGGCTTGATGCTGGTC 60.812 60.000 0.00 0.00 46.14 4.02
3333 3457 4.019858 CTCAGGAGTCTGGTAGATGTTCA 58.980 47.826 0.00 0.00 41.23 3.18
3360 3484 1.718280 GGATCCCACGTATTCTCCCT 58.282 55.000 0.00 0.00 0.00 4.20
3367 3491 1.521450 CGTAGCCGGATCCCACGTAT 61.521 60.000 5.05 0.00 0.00 3.06
3395 3519 4.133373 CTGGGCATGGACTGGGGG 62.133 72.222 0.00 0.00 0.00 5.40
3421 3584 2.510238 GGAGCTGCAGGTGCGTAG 60.510 66.667 25.60 0.00 45.83 3.51
3422 3585 3.300934 CTGGAGCTGCAGGTGCGTA 62.301 63.158 28.56 14.09 45.83 4.42
3423 3586 4.694233 CTGGAGCTGCAGGTGCGT 62.694 66.667 28.56 1.00 45.83 5.24
3424 3587 4.694233 ACTGGAGCTGCAGGTGCG 62.694 66.667 34.65 24.28 45.83 5.34
3425 3588 2.745492 GACTGGAGCTGCAGGTGC 60.745 66.667 34.65 28.09 42.50 5.01
3426 3589 2.046507 GGACTGGAGCTGCAGGTG 60.047 66.667 34.65 15.16 0.00 4.00
3427 3590 1.922369 ATGGACTGGAGCTGCAGGT 60.922 57.895 34.65 20.31 0.00 4.00
3428 3591 1.451567 CATGGACTGGAGCTGCAGG 60.452 63.158 34.65 19.10 0.00 4.85
3429 3592 0.743701 GACATGGACTGGAGCTGCAG 60.744 60.000 31.17 31.17 0.00 4.41
3430 3593 1.297689 GACATGGACTGGAGCTGCA 59.702 57.895 7.99 7.99 0.00 4.41
3431 3594 1.451028 GGACATGGACTGGAGCTGC 60.451 63.158 0.00 0.00 0.00 5.25
3432 3595 0.107800 CTGGACATGGACTGGAGCTG 60.108 60.000 0.00 0.00 0.00 4.24
3433 3596 1.908340 GCTGGACATGGACTGGAGCT 61.908 60.000 0.00 0.00 0.00 4.09
3434 3597 1.451028 GCTGGACATGGACTGGAGC 60.451 63.158 0.00 0.00 0.00 4.70
3435 3598 1.222936 GGCTGGACATGGACTGGAG 59.777 63.158 0.00 0.00 0.00 3.86
3436 3599 0.915872 ATGGCTGGACATGGACTGGA 60.916 55.000 0.00 0.00 0.00 3.86
3437 3600 0.033796 AATGGCTGGACATGGACTGG 60.034 55.000 0.00 0.00 0.00 4.00
3438 3601 1.100510 CAATGGCTGGACATGGACTG 58.899 55.000 0.00 0.00 0.00 3.51
3439 3602 0.682209 GCAATGGCTGGACATGGACT 60.682 55.000 0.00 0.00 36.96 3.85
3440 3603 1.669999 GGCAATGGCTGGACATGGAC 61.670 60.000 0.00 0.00 40.87 4.02
3441 3604 1.380246 GGCAATGGCTGGACATGGA 60.380 57.895 0.00 0.00 40.87 3.41
3442 3605 1.380785 AGGCAATGGCTGGACATGG 60.381 57.895 9.02 0.00 40.87 3.66
3443 3606 0.681887 TGAGGCAATGGCTGGACATG 60.682 55.000 15.83 0.00 38.98 3.21
3444 3607 0.040058 TTGAGGCAATGGCTGGACAT 59.960 50.000 15.83 0.00 38.98 3.06
3445 3608 0.609957 CTTGAGGCAATGGCTGGACA 60.610 55.000 15.83 2.95 38.98 4.02
3446 3609 1.941999 GCTTGAGGCAATGGCTGGAC 61.942 60.000 15.83 0.00 38.98 4.02
3447 3610 1.679977 GCTTGAGGCAATGGCTGGA 60.680 57.895 15.83 0.98 38.98 3.86
3515 3678 1.341156 GGCTGCTGTCCATAGGGTCT 61.341 60.000 0.00 0.00 34.93 3.85
3609 3772 7.497925 AAGAGAAATGTGTCAGTTTTCTACC 57.502 36.000 9.02 1.29 39.22 3.18
3610 3773 7.857885 CCAAAGAGAAATGTGTCAGTTTTCTAC 59.142 37.037 9.02 5.17 39.22 2.59
3622 3785 4.813027 CCATTGGTCCAAAGAGAAATGTG 58.187 43.478 8.75 0.00 29.64 3.21
3623 3786 3.259123 GCCATTGGTCCAAAGAGAAATGT 59.741 43.478 8.75 0.00 29.64 2.71
3625 3788 3.509442 TGCCATTGGTCCAAAGAGAAAT 58.491 40.909 8.75 0.00 0.00 2.17
3633 3796 1.314534 CGCATCTGCCATTGGTCCAA 61.315 55.000 6.80 6.80 37.91 3.53
3634 3797 1.750018 CGCATCTGCCATTGGTCCA 60.750 57.895 4.26 0.00 37.91 4.02
3635 3798 3.113745 CGCATCTGCCATTGGTCC 58.886 61.111 4.26 0.00 37.91 4.46
3636 3799 2.410469 GCGCATCTGCCATTGGTC 59.590 61.111 0.30 0.00 37.91 4.02
3637 3800 3.511595 CGCGCATCTGCCATTGGT 61.512 61.111 8.75 0.00 37.91 3.67
3638 3801 4.918129 GCGCGCATCTGCCATTGG 62.918 66.667 29.10 0.00 37.91 3.16
3639 3802 2.536673 TAGCGCGCATCTGCCATTG 61.537 57.895 35.10 0.00 37.91 2.82
3640 3803 2.203056 TAGCGCGCATCTGCCATT 60.203 55.556 35.10 11.76 37.91 3.16
3641 3804 2.969238 GTAGCGCGCATCTGCCAT 60.969 61.111 35.10 12.60 37.91 4.40
3642 3805 4.449568 TGTAGCGCGCATCTGCCA 62.450 61.111 35.10 16.32 37.91 4.92
3643 3806 3.929948 GTGTAGCGCGCATCTGCC 61.930 66.667 35.10 13.82 37.91 4.85
3707 3870 0.809241 GGATGCAGAAGAGCTCCGTG 60.809 60.000 10.93 6.65 34.99 4.94
3844 4007 4.081087 AGGCATGTTAGGTCACGTTTATCT 60.081 41.667 0.00 0.00 0.00 1.98
3845 4008 4.189231 AGGCATGTTAGGTCACGTTTATC 58.811 43.478 0.00 0.00 0.00 1.75
3846 4009 4.081087 AGAGGCATGTTAGGTCACGTTTAT 60.081 41.667 0.00 0.00 0.00 1.40
3847 4010 3.259876 AGAGGCATGTTAGGTCACGTTTA 59.740 43.478 0.00 0.00 0.00 2.01
3848 4011 2.038557 AGAGGCATGTTAGGTCACGTTT 59.961 45.455 0.00 0.00 0.00 3.60
3849 4012 1.623811 AGAGGCATGTTAGGTCACGTT 59.376 47.619 0.00 0.00 0.00 3.99
3850 4013 1.066858 CAGAGGCATGTTAGGTCACGT 60.067 52.381 0.00 0.00 0.00 4.49
3851 4014 1.066858 ACAGAGGCATGTTAGGTCACG 60.067 52.381 0.00 0.00 0.00 4.35
3852 4015 2.770164 ACAGAGGCATGTTAGGTCAC 57.230 50.000 0.00 0.00 0.00 3.67
3853 4016 5.435686 AATTACAGAGGCATGTTAGGTCA 57.564 39.130 0.52 0.00 34.56 4.02
3854 4017 5.449177 GCAAATTACAGAGGCATGTTAGGTC 60.449 44.000 0.52 0.00 34.56 3.85
3855 4018 4.399303 GCAAATTACAGAGGCATGTTAGGT 59.601 41.667 0.52 0.00 34.56 3.08
3856 4019 4.641989 AGCAAATTACAGAGGCATGTTAGG 59.358 41.667 0.52 0.00 34.56 2.69
3857 4020 5.824904 AGCAAATTACAGAGGCATGTTAG 57.175 39.130 0.52 0.00 34.56 2.34
3858 4021 6.588719 AAAGCAAATTACAGAGGCATGTTA 57.411 33.333 0.52 0.00 34.56 2.41
3859 4022 5.473066 AAAGCAAATTACAGAGGCATGTT 57.527 34.783 0.52 0.00 34.56 2.71
3882 4045 5.171915 GAAACAGTTTCCTGGGAACCTCAA 61.172 45.833 14.34 0.00 43.36 3.02
3908 4071 9.743057 GCAAAACTATACATAATGCCACAATTA 57.257 29.630 0.00 0.00 0.00 1.40
3916 4079 8.279800 TCATACGTGCAAAACTATACATAATGC 58.720 33.333 0.00 0.00 0.00 3.56
3973 4136 9.643693 ATCATTTTCTCAAGCAATTACGAAAAT 57.356 25.926 0.00 0.00 39.98 1.82
3988 4151 9.429359 GAAACTGACTAGAAGATCATTTTCTCA 57.571 33.333 12.71 0.00 39.52 3.27
4000 4164 6.036953 GGCATTGATCTGAAACTGACTAGAAG 59.963 42.308 0.00 0.00 0.00 2.85
4001 4165 5.877012 GGCATTGATCTGAAACTGACTAGAA 59.123 40.000 0.00 0.00 0.00 2.10
4005 4169 4.298103 AGGCATTGATCTGAAACTGACT 57.702 40.909 0.00 0.00 0.00 3.41
4017 4181 7.238514 AGAGGGAAGTATGTTATAGGCATTGAT 59.761 37.037 0.00 0.00 0.00 2.57
4027 4191 7.989947 TTAGGAACAGAGGGAAGTATGTTAT 57.010 36.000 0.00 0.00 36.08 1.89
4028 4192 7.801893 TTTAGGAACAGAGGGAAGTATGTTA 57.198 36.000 0.00 0.00 36.08 2.41
4029 4193 6.697641 TTTAGGAACAGAGGGAAGTATGTT 57.302 37.500 0.00 0.00 38.53 2.71
4030 4194 6.893020 ATTTAGGAACAGAGGGAAGTATGT 57.107 37.500 0.00 0.00 0.00 2.29
4033 4197 8.648693 GCTTATATTTAGGAACAGAGGGAAGTA 58.351 37.037 0.00 0.00 0.00 2.24
4034 4198 7.420330 GGCTTATATTTAGGAACAGAGGGAAGT 60.420 40.741 0.00 0.00 0.00 3.01
4035 4199 6.937465 GGCTTATATTTAGGAACAGAGGGAAG 59.063 42.308 0.00 0.00 0.00 3.46
4036 4200 6.183361 GGGCTTATATTTAGGAACAGAGGGAA 60.183 42.308 0.00 0.00 0.00 3.97
4037 4201 5.309806 GGGCTTATATTTAGGAACAGAGGGA 59.690 44.000 0.00 0.00 0.00 4.20
4039 4203 6.441088 AGGGCTTATATTTAGGAACAGAGG 57.559 41.667 0.00 0.00 0.00 3.69
4040 4204 8.753497 AAAAGGGCTTATATTTAGGAACAGAG 57.247 34.615 0.00 0.00 0.00 3.35
4056 4220 9.093458 CCCATATTGAAATCTATAAAAGGGCTT 57.907 33.333 0.00 0.00 0.00 4.35
4057 4221 7.179160 GCCCATATTGAAATCTATAAAAGGGCT 59.821 37.037 22.61 0.00 41.27 5.19
4058 4222 7.179160 AGCCCATATTGAAATCTATAAAAGGGC 59.821 37.037 22.51 22.51 42.71 5.19
4059 4223 8.655935 AGCCCATATTGAAATCTATAAAAGGG 57.344 34.615 12.00 12.00 32.76 3.95
4066 4230 7.987458 CCGTATGTAGCCCATATTGAAATCTAT 59.013 37.037 0.00 0.00 38.29 1.98
4067 4231 7.327975 CCGTATGTAGCCCATATTGAAATCTA 58.672 38.462 0.00 0.00 38.29 1.98
4068 4232 6.173339 CCGTATGTAGCCCATATTGAAATCT 58.827 40.000 0.00 0.00 38.29 2.40
4069 4233 5.354234 CCCGTATGTAGCCCATATTGAAATC 59.646 44.000 0.00 0.00 38.29 2.17
4070 4234 5.253330 CCCGTATGTAGCCCATATTGAAAT 58.747 41.667 0.00 0.00 38.29 2.17
4071 4235 4.505918 CCCCGTATGTAGCCCATATTGAAA 60.506 45.833 0.00 0.00 38.29 2.69
4072 4236 3.008594 CCCCGTATGTAGCCCATATTGAA 59.991 47.826 0.00 0.00 38.29 2.69
4073 4237 2.569853 CCCCGTATGTAGCCCATATTGA 59.430 50.000 0.00 0.00 38.29 2.57
4074 4238 2.939640 GCCCCGTATGTAGCCCATATTG 60.940 54.545 0.00 0.00 38.29 1.90
4075 4239 1.280998 GCCCCGTATGTAGCCCATATT 59.719 52.381 0.00 0.00 38.29 1.28
4076 4240 0.909623 GCCCCGTATGTAGCCCATAT 59.090 55.000 0.00 0.00 38.29 1.78
4077 4241 0.472161 TGCCCCGTATGTAGCCCATA 60.472 55.000 0.00 0.00 34.86 2.74
4078 4242 1.349542 TTGCCCCGTATGTAGCCCAT 61.350 55.000 0.00 0.00 37.58 4.00
4079 4243 1.563577 TTTGCCCCGTATGTAGCCCA 61.564 55.000 0.00 0.00 0.00 5.36
4080 4244 0.394625 TTTTGCCCCGTATGTAGCCC 60.395 55.000 0.00 0.00 0.00 5.19
4081 4245 1.336755 CATTTTGCCCCGTATGTAGCC 59.663 52.381 0.00 0.00 0.00 3.93
4082 4246 2.290641 CTCATTTTGCCCCGTATGTAGC 59.709 50.000 0.00 0.00 0.00 3.58
4083 4247 3.312421 CACTCATTTTGCCCCGTATGTAG 59.688 47.826 0.00 0.00 0.00 2.74
4084 4248 3.055021 TCACTCATTTTGCCCCGTATGTA 60.055 43.478 0.00 0.00 0.00 2.29
4085 4249 2.091541 CACTCATTTTGCCCCGTATGT 58.908 47.619 0.00 0.00 0.00 2.29
4086 4250 2.364632 TCACTCATTTTGCCCCGTATG 58.635 47.619 0.00 0.00 0.00 2.39
4087 4251 2.799126 TCACTCATTTTGCCCCGTAT 57.201 45.000 0.00 0.00 0.00 3.06
4088 4252 2.570415 TTCACTCATTTTGCCCCGTA 57.430 45.000 0.00 0.00 0.00 4.02
4089 4253 1.818674 GATTCACTCATTTTGCCCCGT 59.181 47.619 0.00 0.00 0.00 5.28
4090 4254 2.094675 AGATTCACTCATTTTGCCCCG 58.905 47.619 0.00 0.00 0.00 5.73
4091 4255 4.016444 TGTAGATTCACTCATTTTGCCCC 58.984 43.478 0.00 0.00 0.00 5.80
4092 4256 4.142381 GGTGTAGATTCACTCATTTTGCCC 60.142 45.833 0.00 0.00 38.28 5.36
4093 4257 4.142381 GGGTGTAGATTCACTCATTTTGCC 60.142 45.833 0.00 0.00 38.54 4.52
4094 4258 4.702131 AGGGTGTAGATTCACTCATTTTGC 59.298 41.667 0.00 0.00 40.86 3.68
4095 4259 7.921786 TTAGGGTGTAGATTCACTCATTTTG 57.078 36.000 0.00 0.00 40.86 2.44
4096 4260 8.934023 TTTTAGGGTGTAGATTCACTCATTTT 57.066 30.769 0.00 0.00 40.86 1.82
4098 4262 9.614792 GTATTTTAGGGTGTAGATTCACTCATT 57.385 33.333 0.00 0.00 40.86 2.57
4099 4263 8.768397 TGTATTTTAGGGTGTAGATTCACTCAT 58.232 33.333 0.00 0.00 40.86 2.90
4100 4264 8.141298 TGTATTTTAGGGTGTAGATTCACTCA 57.859 34.615 0.00 0.00 40.86 3.41
4101 4265 9.262358 GATGTATTTTAGGGTGTAGATTCACTC 57.738 37.037 0.00 0.00 38.92 3.51
4102 4266 8.993424 AGATGTATTTTAGGGTGTAGATTCACT 58.007 33.333 0.00 0.00 38.28 3.41
4153 4317 8.683615 CCTCCGTTTCTAAATATAAGGCTTTTT 58.316 33.333 4.45 2.60 0.00 1.94
4154 4318 7.284716 CCCTCCGTTTCTAAATATAAGGCTTTT 59.715 37.037 4.45 0.00 0.00 2.27
4155 4319 6.771267 CCCTCCGTTTCTAAATATAAGGCTTT 59.229 38.462 4.45 0.00 0.00 3.51
4156 4320 6.100714 TCCCTCCGTTTCTAAATATAAGGCTT 59.899 38.462 4.58 4.58 0.00 4.35
4157 4321 5.605488 TCCCTCCGTTTCTAAATATAAGGCT 59.395 40.000 0.00 0.00 0.00 4.58
4158 4322 5.861727 TCCCTCCGTTTCTAAATATAAGGC 58.138 41.667 0.00 0.00 0.00 4.35
4159 4323 7.063934 ACTCCCTCCGTTTCTAAATATAAGG 57.936 40.000 0.00 0.00 0.00 2.69
4160 4324 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
4161 4325 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4162 4326 8.773033 AAGTACTCCCTCCGTTTCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
4163 4327 7.672122 AAGTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
4164 4328 8.055181 TCTAAGTACTCCCTCCGTTTCTAAATA 58.945 37.037 0.00 0.00 0.00 1.40
4165 4329 6.894103 TCTAAGTACTCCCTCCGTTTCTAAAT 59.106 38.462 0.00 0.00 0.00 1.40
4166 4330 6.248433 TCTAAGTACTCCCTCCGTTTCTAAA 58.752 40.000 0.00 0.00 0.00 1.85
4167 4331 5.819991 TCTAAGTACTCCCTCCGTTTCTAA 58.180 41.667 0.00 0.00 0.00 2.10
4168 4332 5.435291 CTCTAAGTACTCCCTCCGTTTCTA 58.565 45.833 0.00 0.00 0.00 2.10
4169 4333 4.271661 CTCTAAGTACTCCCTCCGTTTCT 58.728 47.826 0.00 0.00 0.00 2.52
4170 4334 3.380954 CCTCTAAGTACTCCCTCCGTTTC 59.619 52.174 0.00 0.00 0.00 2.78
4171 4335 3.011032 TCCTCTAAGTACTCCCTCCGTTT 59.989 47.826 0.00 0.00 0.00 3.60
4172 4336 2.579860 TCCTCTAAGTACTCCCTCCGTT 59.420 50.000 0.00 0.00 0.00 4.44
4173 4337 2.203584 TCCTCTAAGTACTCCCTCCGT 58.796 52.381 0.00 0.00 0.00 4.69
4174 4338 3.150767 CATCCTCTAAGTACTCCCTCCG 58.849 54.545 0.00 0.00 0.00 4.63
4175 4339 2.894765 GCATCCTCTAAGTACTCCCTCC 59.105 54.545 0.00 0.00 0.00 4.30
4176 4340 2.894765 GGCATCCTCTAAGTACTCCCTC 59.105 54.545 0.00 0.00 0.00 4.30
4177 4341 2.247635 TGGCATCCTCTAAGTACTCCCT 59.752 50.000 0.00 0.00 0.00 4.20
4178 4342 2.679082 TGGCATCCTCTAAGTACTCCC 58.321 52.381 0.00 0.00 0.00 4.30
4179 4343 5.567823 GCTTATGGCATCCTCTAAGTACTCC 60.568 48.000 1.65 0.00 41.35 3.85
4180 4344 5.245075 AGCTTATGGCATCCTCTAAGTACTC 59.755 44.000 1.65 0.00 44.79 2.59
4181 4345 5.151454 AGCTTATGGCATCCTCTAAGTACT 58.849 41.667 1.65 0.00 44.79 2.73
4182 4346 5.011125 TGAGCTTATGGCATCCTCTAAGTAC 59.989 44.000 1.65 1.59 44.79 2.73
4183 4347 5.011125 GTGAGCTTATGGCATCCTCTAAGTA 59.989 44.000 1.65 0.00 44.79 2.24
4184 4348 3.969976 TGAGCTTATGGCATCCTCTAAGT 59.030 43.478 1.65 0.00 44.79 2.24
4185 4349 4.202295 TGTGAGCTTATGGCATCCTCTAAG 60.202 45.833 1.65 2.60 44.79 2.18
4186 4350 3.711190 TGTGAGCTTATGGCATCCTCTAA 59.289 43.478 1.65 0.00 44.79 2.10
4187 4351 3.070159 GTGTGAGCTTATGGCATCCTCTA 59.930 47.826 1.65 0.56 44.79 2.43
4188 4352 2.121948 TGTGAGCTTATGGCATCCTCT 58.878 47.619 1.65 0.00 44.79 3.69
4189 4353 2.216898 GTGTGAGCTTATGGCATCCTC 58.783 52.381 1.65 9.35 44.79 3.71
4190 4354 1.473965 CGTGTGAGCTTATGGCATCCT 60.474 52.381 1.65 0.00 44.79 3.24
4201 4365 0.523966 GCTAGTCTGTCGTGTGAGCT 59.476 55.000 0.00 0.00 0.00 4.09
4213 4378 1.638529 ACTCTGTTGCAGGCTAGTCT 58.361 50.000 0.00 0.00 31.51 3.24
4224 4389 9.025020 GTATTATCATCGGCATATACTCTGTTG 57.975 37.037 0.00 0.00 0.00 3.33
4229 4394 9.885934 CTACAGTATTATCATCGGCATATACTC 57.114 37.037 0.00 0.00 0.00 2.59
4230 4395 9.409918 ACTACAGTATTATCATCGGCATATACT 57.590 33.333 0.00 0.00 0.00 2.12
4238 4403 6.340962 TGGGAACTACAGTATTATCATCGG 57.659 41.667 0.00 0.00 0.00 4.18
4248 4413 6.469410 CAGTTTACCATTGGGAACTACAGTA 58.531 40.000 19.90 0.00 33.60 2.74
4249 4414 5.313712 CAGTTTACCATTGGGAACTACAGT 58.686 41.667 19.90 0.22 33.60 3.55
4250 4415 4.700213 CCAGTTTACCATTGGGAACTACAG 59.300 45.833 19.90 11.81 33.60 2.74
4251 4416 4.658063 CCAGTTTACCATTGGGAACTACA 58.342 43.478 19.90 0.00 33.60 2.74
4252 4417 3.442625 GCCAGTTTACCATTGGGAACTAC 59.557 47.826 19.90 9.58 33.60 2.73
4355 4520 2.639286 GCGGTCTGTTTGCAGTGG 59.361 61.111 0.00 0.00 43.05 4.00
4359 4524 3.286751 GCTGGCGGTCTGTTTGCA 61.287 61.111 0.00 0.00 0.00 4.08
4382 4547 2.161855 GCTGATGTGTTGTTCCCATCA 58.838 47.619 0.00 0.00 41.85 3.07
4389 4554 5.648092 GGGTTAGAATAGCTGATGTGTTGTT 59.352 40.000 0.00 0.00 0.00 2.83
4390 4555 5.045578 AGGGTTAGAATAGCTGATGTGTTGT 60.046 40.000 0.00 0.00 0.00 3.32
4391 4556 5.295292 CAGGGTTAGAATAGCTGATGTGTTG 59.705 44.000 0.00 0.00 0.00 3.33
4430 4595 5.695363 TGATTCTCATTCTGATGAAGCGATC 59.305 40.000 0.00 0.00 41.55 3.69
4509 4674 7.463469 TGTGTCGTGTTACATGATTGATATC 57.537 36.000 10.64 0.00 31.77 1.63
4528 4693 3.443976 GTGTGGGAATGTTGTTTGTGTC 58.556 45.455 0.00 0.00 0.00 3.67
4544 4709 1.123576 CACGTCGTAATTGTCGTGTGG 59.876 52.381 0.00 3.76 45.26 4.17
4548 4713 2.693797 AGTCACGTCGTAATTGTCGT 57.306 45.000 0.00 0.00 36.99 4.34
4561 4726 0.797249 CTCGGGTAAGCGAAGTCACG 60.797 60.000 0.00 0.00 0.00 4.35
4756 4921 0.959553 TCGAATGCTCGTAGGATCCC 59.040 55.000 8.55 0.00 45.62 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.