Multiple sequence alignment - TraesCS2A01G527700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G527700 chr2A 100.000 4600 0 0 1 4600 747086092 747090691 0.000000e+00 8495.0
1 TraesCS2A01G527700 chr2A 91.675 1045 84 1 2588 3632 15395163 15396204 0.000000e+00 1445.0
2 TraesCS2A01G527700 chr2A 88.710 1054 114 3 2579 3632 12048318 12047270 0.000000e+00 1282.0
3 TraesCS2A01G527700 chr2A 80.274 583 61 33 618 1193 12103644 12103109 1.550000e-104 390.0
4 TraesCS2A01G527700 chr2A 91.915 235 14 3 959 1193 12073517 12073288 1.600000e-84 324.0
5 TraesCS2A01G527700 chr2D 92.206 2425 108 31 2193 4600 617052280 617054640 0.000000e+00 3356.0
6 TraesCS2A01G527700 chr2D 91.313 1531 60 24 1 1516 617050409 617051881 0.000000e+00 2023.0
7 TraesCS2A01G527700 chr2D 92.057 1045 80 1 2588 3632 13421739 13422780 0.000000e+00 1467.0
8 TraesCS2A01G527700 chr2D 89.388 1046 106 4 2579 3624 11509634 11508594 0.000000e+00 1312.0
9 TraesCS2A01G527700 chr2D 88.667 1050 115 2 2583 3632 11477724 11476679 0.000000e+00 1277.0
10 TraesCS2A01G527700 chr2D 89.299 271 17 9 934 1193 13421370 13421639 3.430000e-86 329.0
11 TraesCS2A01G527700 chr2D 89.272 261 18 3 936 1192 11509965 11509711 7.430000e-83 318.0
12 TraesCS2A01G527700 chr2D 79.572 514 47 36 690 1194 11496815 11496351 9.610000e-82 315.0
13 TraesCS2A01G527700 chr2D 91.064 235 16 2 959 1193 11478084 11477855 3.460000e-81 313.0
14 TraesCS2A01G527700 chr2D 95.152 165 5 1 4439 4600 617057579 617057743 1.640000e-64 257.0
15 TraesCS2A01G527700 chr2D 79.424 243 28 14 597 831 11510269 11510041 7.970000e-33 152.0
16 TraesCS2A01G527700 chr2D 93.846 65 0 2 1788 1852 617051955 617052015 1.360000e-15 95.3
17 TraesCS2A01G527700 chr2D 94.915 59 3 0 1567 1625 617051897 617051955 4.900000e-15 93.5
18 TraesCS2A01G527700 chr2D 79.021 143 16 9 651 786 11478339 11478204 8.200000e-13 86.1
19 TraesCS2A01G527700 chr2D 92.453 53 1 1 1901 1953 617052110 617052159 6.380000e-09 73.1
20 TraesCS2A01G527700 chr2B 92.191 2113 89 40 1937 4018 752786129 752788196 0.000000e+00 2918.0
21 TraesCS2A01G527700 chr2B 90.694 1268 68 19 1 1259 752784231 752785457 0.000000e+00 1642.0
22 TraesCS2A01G527700 chr2B 92.153 1045 79 1 2588 3632 24089835 24090876 0.000000e+00 1472.0
23 TraesCS2A01G527700 chr2B 89.464 1044 102 6 2583 3624 17873746 17872709 0.000000e+00 1312.0
24 TraesCS2A01G527700 chr2B 94.534 494 17 2 4107 4600 752788364 752788847 0.000000e+00 754.0
25 TraesCS2A01G527700 chr2B 89.888 267 10 7 1261 1516 752785542 752785802 1.230000e-85 327.0
26 TraesCS2A01G527700 chr2B 95.939 197 8 0 997 1193 17883301 17883105 2.060000e-83 320.0
27 TraesCS2A01G527700 chr2B 88.889 261 17 8 934 1192 24089478 24089728 1.240000e-80 311.0
28 TraesCS2A01G527700 chr2B 82.403 233 20 14 617 844 17883601 17883385 2.830000e-42 183.0
29 TraesCS2A01G527700 chr2B 87.342 158 20 0 1632 1789 464467799 464467642 1.020000e-41 182.0
30 TraesCS2A01G527700 chr2B 92.308 65 1 2 1788 1852 752785884 752785944 6.340000e-14 89.8
31 TraesCS2A01G527700 chr2B 100.000 39 0 0 1866 1904 752785977 752786015 6.380000e-09 73.1
32 TraesCS2A01G527700 chr2B 90.741 54 2 1 1901 1954 752786063 752786113 8.260000e-08 69.4
33 TraesCS2A01G527700 chr7B 88.957 163 18 0 1627 1789 716308907 716308745 7.800000e-48 202.0
34 TraesCS2A01G527700 chr3B 88.889 162 18 0 1628 1789 821851328 821851167 2.810000e-47 200.0
35 TraesCS2A01G527700 chr3B 97.727 44 1 0 4011 4054 463595518 463595561 4.940000e-10 76.8
36 TraesCS2A01G527700 chr6D 87.879 165 20 0 1628 1792 229431052 229430888 1.310000e-45 195.0
37 TraesCS2A01G527700 chr6D 87.654 162 19 1 1628 1789 404594756 404594596 2.190000e-43 187.0
38 TraesCS2A01G527700 chr6D 95.652 46 2 0 4008 4053 293177523 293177568 1.770000e-09 75.0
39 TraesCS2A01G527700 chr6B 85.870 184 24 2 1628 1810 317547148 317547330 1.310000e-45 195.0
40 TraesCS2A01G527700 chr6B 90.566 53 4 1 4002 4054 68119794 68119743 8.260000e-08 69.4
41 TraesCS2A01G527700 chr4D 86.339 183 17 7 1628 1806 470149934 470150112 4.700000e-45 193.0
42 TraesCS2A01G527700 chr4D 86.310 168 20 3 1627 1793 486616505 486616340 3.660000e-41 180.0
43 TraesCS2A01G527700 chr7A 88.272 162 16 2 1628 1789 592918751 592918909 1.690000e-44 191.0
44 TraesCS2A01G527700 chr7A 89.474 57 4 2 4011 4066 725929362 725929307 2.300000e-08 71.3
45 TraesCS2A01G527700 chr1B 86.905 84 6 2 4136 4219 32399941 32400019 6.340000e-14 89.8
46 TraesCS2A01G527700 chr1B 97.727 44 1 0 4011 4054 116061705 116061662 4.940000e-10 76.8
47 TraesCS2A01G527700 chr1B 95.556 45 2 0 4006 4050 426073299 426073343 6.380000e-09 73.1
48 TraesCS2A01G527700 chr5B 97.727 44 1 0 4011 4054 680823714 680823757 4.940000e-10 76.8
49 TraesCS2A01G527700 chr5D 93.878 49 3 0 4002 4050 530914652 530914700 1.770000e-09 75.0
50 TraesCS2A01G527700 chr4B 93.750 48 3 0 4008 4055 421577929 421577976 6.380000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G527700 chr2A 747086092 747090691 4599 False 8495.000000 8495 100.000000 1 4600 1 chr2A.!!$F2 4599
1 TraesCS2A01G527700 chr2A 15395163 15396204 1041 False 1445.000000 1445 91.675000 2588 3632 1 chr2A.!!$F1 1044
2 TraesCS2A01G527700 chr2A 12047270 12048318 1048 True 1282.000000 1282 88.710000 2579 3632 1 chr2A.!!$R1 1053
3 TraesCS2A01G527700 chr2A 12103109 12103644 535 True 390.000000 390 80.274000 618 1193 1 chr2A.!!$R3 575
4 TraesCS2A01G527700 chr2D 617050409 617057743 7334 False 982.983333 3356 93.314167 1 4600 6 chr2D.!!$F2 4599
5 TraesCS2A01G527700 chr2D 13421370 13422780 1410 False 898.000000 1467 90.678000 934 3632 2 chr2D.!!$F1 2698
6 TraesCS2A01G527700 chr2D 11508594 11510269 1675 True 594.000000 1312 86.028000 597 3624 3 chr2D.!!$R3 3027
7 TraesCS2A01G527700 chr2D 11476679 11478339 1660 True 558.700000 1277 86.250667 651 3632 3 chr2D.!!$R2 2981
8 TraesCS2A01G527700 chr2B 17872709 17873746 1037 True 1312.000000 1312 89.464000 2583 3624 1 chr2B.!!$R1 1041
9 TraesCS2A01G527700 chr2B 24089478 24090876 1398 False 891.500000 1472 90.521000 934 3632 2 chr2B.!!$F1 2698
10 TraesCS2A01G527700 chr2B 752784231 752788847 4616 False 839.042857 2918 92.908000 1 4600 7 chr2B.!!$F2 4599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 770 0.107361 GTCCAATGGACCTAACCCCG 60.107 60.0 21.3 0.0 46.19 5.73 F
764 772 0.107361 CCAATGGACCTAACCCCGTC 60.107 60.0 0.0 0.0 0.00 4.79 F
1632 1775 0.394625 AGTGTCTCGCCTCCTACTCC 60.395 60.0 0.0 0.0 0.00 3.85 F
1639 1782 0.760945 CGCCTCCTACTCCCTCCATT 60.761 60.0 0.0 0.0 0.00 3.16 F
2810 3155 0.827925 TCGTCTTCTGCACCACCTCT 60.828 55.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 2737 0.721718 GGTGTGCAAGCGATGTCTAC 59.278 55.000 0.00 0.00 0.00 2.59 R
2569 2914 0.817013 TGCAAATCGAATCAAGGCCC 59.183 50.000 0.00 0.00 0.00 5.80 R
2580 2925 1.136252 CGACTTGTCACCTGCAAATCG 60.136 52.381 1.59 0.00 38.76 3.34 R
3281 3626 2.158959 GTTCCAGTCGTCGATGCCG 61.159 63.158 0.00 0.00 37.07 5.69 R
3669 4014 0.033504 ACAAACTCGATCGGCAGTGT 59.966 50.000 16.41 11.85 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.336931 GCAAATAGTCTGTTTTCTTATCAGGGA 59.663 37.037 0.00 0.00 0.00 4.20
70 71 2.533266 ACAAGCAGAGTACCACTGTG 57.467 50.000 15.71 0.00 41.86 3.66
75 76 1.272490 GCAGAGTACCACTGTGTAGCA 59.728 52.381 15.71 0.00 41.12 3.49
95 96 5.797051 AGCAAATACAATGGCTGAATGTTT 58.203 33.333 0.00 0.00 34.83 2.83
108 109 2.293122 TGAATGTTTTTGACTCCGGCAG 59.707 45.455 0.00 0.00 0.00 4.85
109 110 2.270352 ATGTTTTTGACTCCGGCAGA 57.730 45.000 0.00 0.00 0.00 4.26
185 186 9.392259 CGACAATGTATCTACCATATACCTCTA 57.608 37.037 0.00 0.00 0.00 2.43
206 207 2.026356 ACATCAACCCCGTTCATCATCA 60.026 45.455 0.00 0.00 0.00 3.07
221 222 5.478407 TCATCATCAACGTACACATTGAGT 58.522 37.500 9.34 0.00 38.19 3.41
275 276 1.557443 CTTGGACAGTTCCGTGTCGC 61.557 60.000 0.00 0.00 46.72 5.19
279 280 0.388649 GACAGTTCCGTGTCGCTCAT 60.389 55.000 0.00 0.00 37.69 2.90
339 340 2.033194 GCTACCGTCGGCAAGCTTT 61.033 57.895 24.73 3.13 33.78 3.51
383 385 2.816204 ATCATCTCTGATGACCTGCG 57.184 50.000 11.77 0.00 40.66 5.18
384 386 1.767759 TCATCTCTGATGACCTGCGA 58.232 50.000 6.19 0.00 0.00 5.10
385 387 1.406898 TCATCTCTGATGACCTGCGAC 59.593 52.381 6.19 0.00 0.00 5.19
386 388 1.408340 CATCTCTGATGACCTGCGACT 59.592 52.381 1.64 0.00 0.00 4.18
467 469 7.878127 CCGTACCAATCCTATATCTTCATTGTT 59.122 37.037 0.00 0.00 0.00 2.83
468 470 9.923143 CGTACCAATCCTATATCTTCATTGTTA 57.077 33.333 0.00 0.00 0.00 2.41
470 472 8.833231 ACCAATCCTATATCTTCATTGTTACG 57.167 34.615 0.00 0.00 0.00 3.18
548 550 5.768164 AGGTGTCAAAAACCGTGATTAGATT 59.232 36.000 0.00 0.00 42.89 2.40
702 704 2.479650 GTAGACGTGTCGCTCGCT 59.520 61.111 0.00 0.00 34.09 4.93
762 770 0.107361 GTCCAATGGACCTAACCCCG 60.107 60.000 21.30 0.00 46.19 5.73
764 772 0.107361 CCAATGGACCTAACCCCGTC 60.107 60.000 0.00 0.00 0.00 4.79
825 839 0.666913 CCTATATATCCCGTCGCCCG 59.333 60.000 0.00 0.00 0.00 6.13
844 858 0.890542 GCACTCTCATGGCACCACAA 60.891 55.000 0.00 0.00 0.00 3.33
888 905 2.612972 CGCCTGTCATTTGTCTACCACT 60.613 50.000 0.00 0.00 0.00 4.00
914 935 3.997064 CTGCTTCCCTCTGCGTCCG 62.997 68.421 0.00 0.00 0.00 4.79
986 1017 4.137872 GCCGCTGGTACGTGCCTA 62.138 66.667 23.67 9.20 0.00 3.93
987 1018 2.202703 CCGCTGGTACGTGCCTAC 60.203 66.667 23.67 13.99 0.00 3.18
1204 1247 4.804139 GGATGTGTAAGTCTATGTTCACCG 59.196 45.833 0.00 0.00 0.00 4.94
1242 1285 1.530419 ATGCACGGCTTGTTTCCCA 60.530 52.632 0.00 0.00 0.00 4.37
1259 1302 2.489329 TCCCATAACGGCGCTACTATAC 59.511 50.000 6.90 0.00 0.00 1.47
1358 1484 4.844884 AGAAAATAAGTACTGGGAGGCAC 58.155 43.478 0.00 0.00 0.00 5.01
1360 1486 4.862641 AAATAAGTACTGGGAGGCACAT 57.137 40.909 0.00 0.00 0.00 3.21
1449 1592 4.020396 ACACAATAAGCATGGCCATGAAAA 60.020 37.500 43.18 28.04 41.20 2.29
1496 1639 6.538945 AACCTGTTGTCCATTTAACTGTTT 57.461 33.333 0.00 0.00 0.00 2.83
1497 1640 7.467539 CGAACCTGTTGTCCATTTAACTGTTTA 60.468 37.037 0.00 0.00 0.00 2.01
1499 1642 8.245195 ACCTGTTGTCCATTTAACTGTTTATT 57.755 30.769 0.00 0.00 0.00 1.40
1500 1643 8.357402 ACCTGTTGTCCATTTAACTGTTTATTC 58.643 33.333 0.00 0.00 0.00 1.75
1501 1644 8.576442 CCTGTTGTCCATTTAACTGTTTATTCT 58.424 33.333 0.00 0.00 0.00 2.40
1516 1659 9.846248 ACTGTTTATTCTATTTTTAGCTGCAAG 57.154 29.630 1.02 0.00 0.00 4.01
1517 1660 9.846248 CTGTTTATTCTATTTTTAGCTGCAAGT 57.154 29.630 1.02 0.00 35.30 3.16
1533 1676 7.716612 AGCTGCAAGTGTTTATATTAATTCCC 58.283 34.615 1.02 0.00 35.30 3.97
1534 1677 6.636850 GCTGCAAGTGTTTATATTAATTCCCG 59.363 38.462 0.00 0.00 35.30 5.14
1535 1678 7.633193 TGCAAGTGTTTATATTAATTCCCGT 57.367 32.000 0.00 0.00 0.00 5.28
1536 1679 8.734218 TGCAAGTGTTTATATTAATTCCCGTA 57.266 30.769 0.00 0.00 0.00 4.02
1537 1680 9.344772 TGCAAGTGTTTATATTAATTCCCGTAT 57.655 29.630 0.00 0.00 0.00 3.06
1577 1720 8.758633 AATATGTATACTCCTGCACGTAATTC 57.241 34.615 4.17 0.00 0.00 2.17
1628 1771 4.220413 CGAGTGTCTCGCCTCCTA 57.780 61.111 6.24 0.00 46.75 2.94
1629 1772 1.722677 CGAGTGTCTCGCCTCCTAC 59.277 63.158 6.24 0.00 46.75 3.18
1630 1773 0.745128 CGAGTGTCTCGCCTCCTACT 60.745 60.000 6.24 0.00 46.75 2.57
1631 1774 1.018910 GAGTGTCTCGCCTCCTACTC 58.981 60.000 0.00 0.00 0.00 2.59
1632 1775 0.394625 AGTGTCTCGCCTCCTACTCC 60.395 60.000 0.00 0.00 0.00 3.85
1633 1776 1.076923 TGTCTCGCCTCCTACTCCC 60.077 63.158 0.00 0.00 0.00 4.30
1634 1777 1.227946 GTCTCGCCTCCTACTCCCT 59.772 63.158 0.00 0.00 0.00 4.20
1635 1778 0.820482 GTCTCGCCTCCTACTCCCTC 60.820 65.000 0.00 0.00 0.00 4.30
1636 1779 1.529713 CTCGCCTCCTACTCCCTCC 60.530 68.421 0.00 0.00 0.00 4.30
1637 1780 2.279073 CGCCTCCTACTCCCTCCA 59.721 66.667 0.00 0.00 0.00 3.86
1638 1781 1.152440 CGCCTCCTACTCCCTCCAT 60.152 63.158 0.00 0.00 0.00 3.41
1639 1782 0.760945 CGCCTCCTACTCCCTCCATT 60.761 60.000 0.00 0.00 0.00 3.16
1640 1783 1.052617 GCCTCCTACTCCCTCCATTC 58.947 60.000 0.00 0.00 0.00 2.67
1641 1784 1.723288 CCTCCTACTCCCTCCATTCC 58.277 60.000 0.00 0.00 0.00 3.01
1642 1785 1.221781 CCTCCTACTCCCTCCATTCCT 59.778 57.143 0.00 0.00 0.00 3.36
1643 1786 2.451273 CCTCCTACTCCCTCCATTCCTA 59.549 54.545 0.00 0.00 0.00 2.94
1644 1787 3.116707 CCTCCTACTCCCTCCATTCCTAA 60.117 52.174 0.00 0.00 0.00 2.69
1645 1788 4.557705 CTCCTACTCCCTCCATTCCTAAA 58.442 47.826 0.00 0.00 0.00 1.85
1646 1789 5.158889 CTCCTACTCCCTCCATTCCTAAAT 58.841 45.833 0.00 0.00 0.00 1.40
1647 1790 6.303427 TCCTACTCCCTCCATTCCTAAATA 57.697 41.667 0.00 0.00 0.00 1.40
1648 1791 6.886637 TCCTACTCCCTCCATTCCTAAATAT 58.113 40.000 0.00 0.00 0.00 1.28
1649 1792 8.019537 TCCTACTCCCTCCATTCCTAAATATA 57.980 38.462 0.00 0.00 0.00 0.86
1650 1793 8.470109 TCCTACTCCCTCCATTCCTAAATATAA 58.530 37.037 0.00 0.00 0.00 0.98
1651 1794 9.112658 CCTACTCCCTCCATTCCTAAATATAAA 57.887 37.037 0.00 0.00 0.00 1.40
1680 1823 9.513906 TTTGTAGAGATTTCATTATGAACCACA 57.486 29.630 7.19 0.00 35.89 4.17
1681 1824 9.685276 TTGTAGAGATTTCATTATGAACCACAT 57.315 29.630 7.19 0.00 35.89 3.21
1695 1838 9.958180 TTATGAACCACATAAGGATGTATATGG 57.042 33.333 0.00 0.00 44.82 2.74
1696 1839 7.625498 TGAACCACATAAGGATGTATATGGA 57.375 36.000 0.00 0.00 44.82 3.41
1697 1840 8.218423 TGAACCACATAAGGATGTATATGGAT 57.782 34.615 0.00 0.00 44.82 3.41
1698 1841 8.102676 TGAACCACATAAGGATGTATATGGATG 58.897 37.037 0.00 0.00 44.82 3.51
1699 1842 6.418101 ACCACATAAGGATGTATATGGATGC 58.582 40.000 0.00 0.00 44.82 3.91
1700 1843 6.012596 ACCACATAAGGATGTATATGGATGCA 60.013 38.462 0.00 0.00 44.82 3.96
1701 1844 7.058525 CCACATAAGGATGTATATGGATGCAT 58.941 38.462 4.68 4.68 44.82 3.96
1702 1845 7.558807 CCACATAAGGATGTATATGGATGCATT 59.441 37.037 4.56 0.00 44.82 3.56
1703 1846 8.963725 CACATAAGGATGTATATGGATGCATTT 58.036 33.333 4.56 0.00 44.82 2.32
1704 1847 9.537852 ACATAAGGATGTATATGGATGCATTTT 57.462 29.630 4.56 0.00 44.77 1.82
1708 1851 9.458727 AAGGATGTATATGGATGCATTTTAGAG 57.541 33.333 4.56 0.00 38.38 2.43
1709 1852 8.609483 AGGATGTATATGGATGCATTTTAGAGT 58.391 33.333 4.56 0.00 38.38 3.24
1710 1853 8.671921 GGATGTATATGGATGCATTTTAGAGTG 58.328 37.037 4.56 0.00 38.38 3.51
1711 1854 9.224267 GATGTATATGGATGCATTTTAGAGTGT 57.776 33.333 4.56 0.00 38.38 3.55
1718 1861 9.797642 ATGGATGCATTTTAGAGTGTATATTCA 57.202 29.630 0.00 0.00 0.00 2.57
1719 1862 9.056005 TGGATGCATTTTAGAGTGTATATTCAC 57.944 33.333 0.00 4.40 38.46 3.18
1731 1874 5.986135 AGTGTATATTCACTCATTTCGCTCC 59.014 40.000 9.03 0.00 44.07 4.70
1732 1875 4.982295 TGTATATTCACTCATTTCGCTCCG 59.018 41.667 0.00 0.00 0.00 4.63
1733 1876 2.386661 ATTCACTCATTTCGCTCCGT 57.613 45.000 0.00 0.00 0.00 4.69
1734 1877 3.520290 ATTCACTCATTTCGCTCCGTA 57.480 42.857 0.00 0.00 0.00 4.02
1735 1878 3.520290 TTCACTCATTTCGCTCCGTAT 57.480 42.857 0.00 0.00 0.00 3.06
1736 1879 2.809446 TCACTCATTTCGCTCCGTATG 58.191 47.619 0.00 0.00 0.00 2.39
1737 1880 2.165641 TCACTCATTTCGCTCCGTATGT 59.834 45.455 0.00 0.00 0.00 2.29
1738 1881 3.379057 TCACTCATTTCGCTCCGTATGTA 59.621 43.478 0.00 0.00 0.00 2.29
1739 1882 3.731216 CACTCATTTCGCTCCGTATGTAG 59.269 47.826 0.00 0.00 0.00 2.74
1740 1883 3.380637 ACTCATTTCGCTCCGTATGTAGT 59.619 43.478 0.00 0.00 0.00 2.73
1741 1884 3.961182 TCATTTCGCTCCGTATGTAGTC 58.039 45.455 0.00 0.00 0.00 2.59
1742 1885 2.857592 TTTCGCTCCGTATGTAGTCC 57.142 50.000 0.00 0.00 0.00 3.85
1743 1886 1.753930 TTCGCTCCGTATGTAGTCCA 58.246 50.000 0.00 0.00 0.00 4.02
1744 1887 1.977056 TCGCTCCGTATGTAGTCCAT 58.023 50.000 0.00 0.00 37.58 3.41
1745 1888 3.130280 TCGCTCCGTATGTAGTCCATA 57.870 47.619 0.00 0.00 34.86 2.74
1746 1889 3.072211 TCGCTCCGTATGTAGTCCATAG 58.928 50.000 0.00 0.00 36.71 2.23
1747 1890 3.072211 CGCTCCGTATGTAGTCCATAGA 58.928 50.000 0.00 0.00 36.71 1.98
1748 1891 3.501062 CGCTCCGTATGTAGTCCATAGAA 59.499 47.826 0.00 0.00 36.71 2.10
1749 1892 4.378563 CGCTCCGTATGTAGTCCATAGAAG 60.379 50.000 0.00 0.00 36.71 2.85
1750 1893 4.760715 GCTCCGTATGTAGTCCATAGAAGA 59.239 45.833 0.00 0.00 36.71 2.87
1751 1894 5.241064 GCTCCGTATGTAGTCCATAGAAGAA 59.759 44.000 0.00 0.00 36.71 2.52
1752 1895 6.071840 GCTCCGTATGTAGTCCATAGAAGAAT 60.072 42.308 0.00 0.00 36.71 2.40
1753 1896 7.450124 TCCGTATGTAGTCCATAGAAGAATC 57.550 40.000 0.00 0.00 36.71 2.52
1754 1897 7.232188 TCCGTATGTAGTCCATAGAAGAATCT 58.768 38.462 0.00 0.00 36.71 2.40
1755 1898 7.390996 TCCGTATGTAGTCCATAGAAGAATCTC 59.609 40.741 0.00 0.00 36.71 2.75
1756 1899 7.362229 CCGTATGTAGTCCATAGAAGAATCTCC 60.362 44.444 0.00 0.00 36.71 3.71
1757 1900 7.175119 CGTATGTAGTCCATAGAAGAATCTCCA 59.825 40.741 0.00 0.00 36.71 3.86
1758 1901 6.716934 TGTAGTCCATAGAAGAATCTCCAC 57.283 41.667 0.00 0.00 37.10 4.02
1759 1902 6.194967 TGTAGTCCATAGAAGAATCTCCACA 58.805 40.000 0.00 0.00 37.10 4.17
1760 1903 6.667848 TGTAGTCCATAGAAGAATCTCCACAA 59.332 38.462 0.00 0.00 37.10 3.33
1761 1904 6.627087 AGTCCATAGAAGAATCTCCACAAA 57.373 37.500 0.00 0.00 37.10 2.83
1762 1905 6.648192 AGTCCATAGAAGAATCTCCACAAAG 58.352 40.000 0.00 0.00 37.10 2.77
1763 1906 5.295540 GTCCATAGAAGAATCTCCACAAAGC 59.704 44.000 0.00 0.00 37.10 3.51
1764 1907 4.578105 CCATAGAAGAATCTCCACAAAGCC 59.422 45.833 0.00 0.00 37.10 4.35
1765 1908 5.435291 CATAGAAGAATCTCCACAAAGCCT 58.565 41.667 0.00 0.00 37.10 4.58
1766 1909 4.379302 AGAAGAATCTCCACAAAGCCTT 57.621 40.909 0.00 0.00 0.00 4.35
1767 1910 5.505181 AGAAGAATCTCCACAAAGCCTTA 57.495 39.130 0.00 0.00 0.00 2.69
1768 1911 6.072199 AGAAGAATCTCCACAAAGCCTTAT 57.928 37.500 0.00 0.00 0.00 1.73
1769 1912 7.200434 AGAAGAATCTCCACAAAGCCTTATA 57.800 36.000 0.00 0.00 0.00 0.98
1770 1913 7.810260 AGAAGAATCTCCACAAAGCCTTATAT 58.190 34.615 0.00 0.00 0.00 0.86
1771 1914 8.277918 AGAAGAATCTCCACAAAGCCTTATATT 58.722 33.333 0.00 0.00 0.00 1.28
1772 1915 8.829373 AAGAATCTCCACAAAGCCTTATATTT 57.171 30.769 0.00 0.00 0.00 1.40
1773 1916 9.920946 AAGAATCTCCACAAAGCCTTATATTTA 57.079 29.630 0.00 0.00 0.00 1.40
1774 1917 9.343539 AGAATCTCCACAAAGCCTTATATTTAC 57.656 33.333 0.00 0.00 0.00 2.01
1775 1918 7.730364 ATCTCCACAAAGCCTTATATTTACG 57.270 36.000 0.00 0.00 0.00 3.18
1776 1919 6.880484 TCTCCACAAAGCCTTATATTTACGA 58.120 36.000 0.00 0.00 0.00 3.43
1777 1920 7.332557 TCTCCACAAAGCCTTATATTTACGAA 58.667 34.615 0.00 0.00 0.00 3.85
1778 1921 7.990886 TCTCCACAAAGCCTTATATTTACGAAT 59.009 33.333 0.00 0.00 0.00 3.34
1779 1922 7.925993 TCCACAAAGCCTTATATTTACGAATG 58.074 34.615 0.00 0.00 0.00 2.67
1780 1923 7.012894 TCCACAAAGCCTTATATTTACGAATGG 59.987 37.037 0.00 0.00 0.00 3.16
1781 1924 7.012894 CCACAAAGCCTTATATTTACGAATGGA 59.987 37.037 0.00 0.00 0.00 3.41
1782 1925 8.402472 CACAAAGCCTTATATTTACGAATGGAA 58.598 33.333 0.00 0.00 0.00 3.53
1783 1926 8.621286 ACAAAGCCTTATATTTACGAATGGAAG 58.379 33.333 0.00 0.00 0.00 3.46
1784 1927 7.745620 AAGCCTTATATTTACGAATGGAAGG 57.254 36.000 0.00 0.00 39.30 3.46
1785 1928 7.074653 AGCCTTATATTTACGAATGGAAGGA 57.925 36.000 13.61 0.00 38.97 3.36
1786 1929 7.162082 AGCCTTATATTTACGAATGGAAGGAG 58.838 38.462 13.61 0.00 38.97 3.69
1852 1995 3.575256 ACAGTGTTACAGTGGATCGGTTA 59.425 43.478 22.17 0.00 38.94 2.85
1853 1996 4.039488 ACAGTGTTACAGTGGATCGGTTAA 59.961 41.667 22.17 0.00 38.94 2.01
1854 1997 4.387862 CAGTGTTACAGTGGATCGGTTAAC 59.612 45.833 12.04 0.00 31.77 2.01
1856 1999 3.579586 TGTTACAGTGGATCGGTTAACCT 59.420 43.478 22.12 4.46 0.00 3.50
1858 2001 3.881937 ACAGTGGATCGGTTAACCTAC 57.118 47.619 22.12 12.42 0.00 3.18
1862 2005 3.119352 AGTGGATCGGTTAACCTACGAAC 60.119 47.826 22.12 14.10 40.27 3.95
1863 2006 2.159393 TGGATCGGTTAACCTACGAACG 60.159 50.000 22.12 7.39 40.27 3.95
1904 2067 8.889717 CGTGTTTATATGTGGACTAATTTCCTT 58.110 33.333 0.00 0.00 36.51 3.36
1910 2073 8.854614 ATATGTGGACTAATTTCCTTAGATGC 57.145 34.615 0.00 0.00 39.43 3.91
1911 2074 6.061022 TGTGGACTAATTTCCTTAGATGCA 57.939 37.500 0.00 0.00 39.43 3.96
1912 2075 5.880332 TGTGGACTAATTTCCTTAGATGCAC 59.120 40.000 0.00 5.92 39.43 4.57
1915 2078 5.885912 GGACTAATTTCCTTAGATGCACCAA 59.114 40.000 0.00 0.00 39.43 3.67
2029 2278 6.921332 TTTTCAGAAGAAAACAACGACAAC 57.079 33.333 0.00 0.00 45.97 3.32
2063 2312 8.640063 TTTACAGGGTAAAGGGAGTTTTATTC 57.360 34.615 0.00 0.00 0.00 1.75
2064 2313 5.577100 ACAGGGTAAAGGGAGTTTTATTCC 58.423 41.667 0.00 0.00 0.00 3.01
2065 2314 5.075344 ACAGGGTAAAGGGAGTTTTATTCCA 59.925 40.000 0.00 0.00 36.40 3.53
2066 2315 6.194967 CAGGGTAAAGGGAGTTTTATTCCAT 58.805 40.000 0.00 0.00 36.40 3.41
2076 2326 8.778059 AGGGAGTTTTATTCCATATAGTGACAA 58.222 33.333 0.00 0.00 36.40 3.18
2084 2334 6.925610 TTCCATATAGTGACAAGATTGCAC 57.074 37.500 10.29 10.29 36.29 4.57
2087 2337 5.468072 CCATATAGTGACAAGATTGCACTCC 59.532 44.000 19.03 0.00 41.31 3.85
2088 2338 4.833478 ATAGTGACAAGATTGCACTCCT 57.167 40.909 19.03 10.28 41.31 3.69
2089 2339 5.939764 ATAGTGACAAGATTGCACTCCTA 57.060 39.130 19.03 8.62 41.31 2.94
2090 2340 4.623932 AGTGACAAGATTGCACTCCTAA 57.376 40.909 13.37 0.00 39.54 2.69
2091 2341 5.171339 AGTGACAAGATTGCACTCCTAAT 57.829 39.130 13.37 0.00 39.54 1.73
2108 2358 9.186323 CACTCCTAATTAATACAAGATCGTGAG 57.814 37.037 15.90 0.00 0.00 3.51
2156 2406 9.472361 TCTAATAGTAGTATTGCGTTGATTTCC 57.528 33.333 12.29 0.00 31.04 3.13
2163 2413 6.381801 AGTATTGCGTTGATTTCCTGAAAAG 58.618 36.000 0.00 0.00 33.56 2.27
2252 2513 6.660521 AGACAAGCAATTAATCCAGAATGTCA 59.339 34.615 15.38 0.00 36.74 3.58
2266 2527 1.381928 ATGTCACTACCGGACGCGAT 61.382 55.000 15.93 0.00 38.10 4.58
2309 2570 5.904362 AGAACTTTTCTTTTGAGTGCACT 57.096 34.783 21.88 21.88 36.36 4.40
2350 2611 2.479275 GCCACTCGACAAAGAAAGTACC 59.521 50.000 0.00 0.00 0.00 3.34
2359 2622 5.333111 CGACAAAGAAAGTACCAGCAAGTAC 60.333 44.000 7.94 7.94 42.46 2.73
2379 2642 2.026822 ACTGGAAACATGAGCGAATCCT 60.027 45.455 0.00 0.00 41.51 3.24
2391 2654 3.070018 AGCGAATCCTTGAGTTGACTTG 58.930 45.455 0.00 0.00 0.00 3.16
2393 2656 3.124297 GCGAATCCTTGAGTTGACTTGAG 59.876 47.826 0.00 0.00 0.00 3.02
2465 2737 7.986085 TTAAAGAGAGAGAGAAACCCAAATG 57.014 36.000 0.00 0.00 0.00 2.32
2475 2747 3.689649 AGAAACCCAAATGTAGACATCGC 59.310 43.478 0.00 0.00 35.10 4.58
2481 2753 3.419915 CAAATGTAGACATCGCTTGCAC 58.580 45.455 0.00 0.00 35.10 4.57
2511 2793 6.636454 TTAACCCATGAATACTTGTCTCCT 57.364 37.500 0.00 0.00 0.00 3.69
2516 2798 5.114780 CCATGAATACTTGTCTCCTGTCTG 58.885 45.833 0.00 0.00 0.00 3.51
2517 2803 4.808414 TGAATACTTGTCTCCTGTCTGG 57.192 45.455 0.00 0.00 37.10 3.86
2530 2818 2.695147 CCTGTCTGGTTTGCCTTTTCTT 59.305 45.455 0.00 0.00 35.27 2.52
2534 2825 2.693074 TCTGGTTTGCCTTTTCTTGGTC 59.307 45.455 0.00 0.00 35.27 4.02
2569 2914 1.812922 CTAACTCTGCCTGCCTGCG 60.813 63.158 0.00 0.00 0.00 5.18
2570 2915 3.315142 TAACTCTGCCTGCCTGCGG 62.315 63.158 0.00 0.00 39.04 5.69
2618 2963 4.406456 AGTCGCAGATCAGGAAGAGATAT 58.594 43.478 0.00 0.00 40.67 1.63
2810 3155 0.827925 TCGTCTTCTGCACCACCTCT 60.828 55.000 0.00 0.00 0.00 3.69
2861 3206 1.817099 CACCAAGATGCTCGGCCTC 60.817 63.158 0.00 0.00 0.00 4.70
2996 3341 3.781770 CTGCTCCGAGATCACCGCC 62.782 68.421 0.00 0.00 0.00 6.13
3038 3383 2.053277 GTCCCACCTCGACTCCCTC 61.053 68.421 0.00 0.00 0.00 4.30
3612 3957 1.337167 CCGCATGATCATCGCTCCTTA 60.337 52.381 20.46 0.00 0.00 2.69
3666 4011 2.539346 CGTACTACGTACAGCAGCTT 57.461 50.000 0.00 0.00 38.77 3.74
3667 4012 2.438583 CGTACTACGTACAGCAGCTTC 58.561 52.381 0.00 0.00 38.77 3.86
3668 4013 2.095532 CGTACTACGTACAGCAGCTTCT 59.904 50.000 0.00 0.00 38.77 2.85
3669 4014 3.308053 CGTACTACGTACAGCAGCTTCTA 59.692 47.826 0.00 0.00 38.77 2.10
3670 4015 3.761311 ACTACGTACAGCAGCTTCTAC 57.239 47.619 0.00 0.00 0.00 2.59
3679 4024 3.748863 CAGCTTCTACACTGCCGAT 57.251 52.632 0.00 0.00 0.00 4.18
3680 4025 1.565305 CAGCTTCTACACTGCCGATC 58.435 55.000 0.00 0.00 0.00 3.69
3681 4026 0.101399 AGCTTCTACACTGCCGATCG 59.899 55.000 8.51 8.51 0.00 3.69
3682 4027 0.100682 GCTTCTACACTGCCGATCGA 59.899 55.000 18.66 0.00 0.00 3.59
3706 4051 9.499585 CGAGTTTGTACCATATATATTCTACCG 57.500 37.037 0.00 0.00 0.00 4.02
3736 4084 4.512198 CGTGGTTTGTATGTGTTGGTAGAA 59.488 41.667 0.00 0.00 0.00 2.10
3737 4085 5.333798 CGTGGTTTGTATGTGTTGGTAGAAG 60.334 44.000 0.00 0.00 0.00 2.85
3738 4086 5.761234 GTGGTTTGTATGTGTTGGTAGAAGA 59.239 40.000 0.00 0.00 0.00 2.87
3783 4135 1.209127 GCACGCCGTTGCATACTTT 59.791 52.632 6.76 0.00 42.49 2.66
3932 4285 7.334090 TGGAAAACAAATGGTGATTCTTTCAA 58.666 30.769 0.00 0.00 35.70 2.69
4021 4377 6.956299 ATTCATAAATGCAGTGTCAAAAGC 57.044 33.333 0.00 0.00 0.00 3.51
4022 4378 4.475028 TCATAAATGCAGTGTCAAAAGCG 58.525 39.130 0.00 0.00 0.00 4.68
4023 4379 2.869233 AAATGCAGTGTCAAAAGCGT 57.131 40.000 0.00 0.00 0.00 5.07
4024 4380 2.869233 AATGCAGTGTCAAAAGCGTT 57.131 40.000 0.00 0.00 0.00 4.84
4025 4381 2.869233 ATGCAGTGTCAAAAGCGTTT 57.131 40.000 0.00 0.00 0.00 3.60
4026 4382 2.645730 TGCAGTGTCAAAAGCGTTTT 57.354 40.000 0.00 0.00 0.00 2.43
4027 4383 2.953020 TGCAGTGTCAAAAGCGTTTTT 58.047 38.095 3.95 3.95 36.97 1.94
4028 4384 4.098055 TGCAGTGTCAAAAGCGTTTTTA 57.902 36.364 9.75 0.00 34.81 1.52
4029 4385 4.677584 TGCAGTGTCAAAAGCGTTTTTAT 58.322 34.783 9.75 0.00 34.81 1.40
4030 4386 5.822278 TGCAGTGTCAAAAGCGTTTTTATA 58.178 33.333 9.75 0.00 34.81 0.98
4031 4387 6.442952 TGCAGTGTCAAAAGCGTTTTTATAT 58.557 32.000 9.75 0.00 34.81 0.86
4032 4388 6.920758 TGCAGTGTCAAAAGCGTTTTTATATT 59.079 30.769 9.75 0.00 34.81 1.28
4033 4389 8.076781 TGCAGTGTCAAAAGCGTTTTTATATTA 58.923 29.630 9.75 0.00 34.81 0.98
4034 4390 9.072294 GCAGTGTCAAAAGCGTTTTTATATTAT 57.928 29.630 9.75 0.00 34.81 1.28
4036 4392 9.567848 AGTGTCAAAAGCGTTTTTATATTATGG 57.432 29.630 9.75 0.00 34.81 2.74
4037 4393 8.803799 GTGTCAAAAGCGTTTTTATATTATGGG 58.196 33.333 9.75 0.00 34.81 4.00
4038 4394 8.740906 TGTCAAAAGCGTTTTTATATTATGGGA 58.259 29.630 9.75 0.00 34.81 4.37
4039 4395 9.016623 GTCAAAAGCGTTTTTATATTATGGGAC 57.983 33.333 9.75 6.39 34.81 4.46
4040 4396 7.911205 TCAAAAGCGTTTTTATATTATGGGACG 59.089 33.333 9.75 0.00 34.81 4.79
4041 4397 5.934935 AGCGTTTTTATATTATGGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
4045 4401 5.410439 CGTTTTTATATTATGGGACGGAGGG 59.590 44.000 0.00 0.00 0.00 4.30
4046 4402 6.536447 GTTTTTATATTATGGGACGGAGGGA 58.464 40.000 0.00 0.00 0.00 4.20
4087 4443 0.531200 CTCGTCCGGCCTCTAAAAGT 59.469 55.000 0.00 0.00 0.00 2.66
4094 4450 1.829222 CGGCCTCTAAAAGTACCCAGA 59.171 52.381 0.00 0.00 0.00 3.86
4115 4573 9.130661 CCCAGACTCACTATAGGAATCATATAG 57.869 40.741 17.36 17.36 38.59 1.31
4116 4574 9.693739 CCAGACTCACTATAGGAATCATATAGT 57.306 37.037 18.50 18.50 43.83 2.12
4118 4576 9.914834 AGACTCACTATAGGAATCATATAGTCC 57.085 37.037 20.61 12.19 42.06 3.85
4133 4595 7.971455 TCATATAGTCCGACACATATTACTCG 58.029 38.462 0.40 0.00 0.00 4.18
4359 4821 2.355837 GCTTCACCGTCGACAGCA 60.356 61.111 17.16 0.00 0.00 4.41
4365 4827 4.794439 CCGTCGACAGCATCCGCA 62.794 66.667 17.16 0.00 42.27 5.69
4372 4834 1.530441 CGACAGCATCCGCAATGAAAG 60.530 52.381 0.40 0.00 42.27 2.62
4422 4884 5.931146 AGTTTGCAAGTTCAAATGTCAAACA 59.069 32.000 13.93 0.00 41.09 2.83
4439 4901 4.842380 TCAAACAAGCTACTAGGGGTAAGT 59.158 41.667 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.105473 CGGTCCCTGATAAGAAAACAGACTA 60.105 44.000 0.00 0.00 34.07 2.59
40 41 3.296709 CTGCTTGTAGCGACCCGGT 62.297 63.158 0.00 0.00 46.26 5.28
70 71 5.894807 ACATTCAGCCATTGTATTTGCTAC 58.105 37.500 0.00 0.00 31.69 3.58
75 76 7.933033 AGTCAAAAACATTCAGCCATTGTATTT 59.067 29.630 0.00 0.00 0.00 1.40
95 96 1.134367 CGAGTATCTGCCGGAGTCAAA 59.866 52.381 5.05 0.00 0.00 2.69
108 109 4.184629 AGCAATGGAGTTTGACGAGTATC 58.815 43.478 0.00 0.00 0.00 2.24
109 110 4.184629 GAGCAATGGAGTTTGACGAGTAT 58.815 43.478 0.00 0.00 0.00 2.12
185 186 2.026356 TGATGATGAACGGGGTTGATGT 60.026 45.455 0.00 0.00 0.00 3.06
206 207 6.926826 TGAATGTCTAACTCAATGTGTACGTT 59.073 34.615 0.00 0.00 0.00 3.99
221 222 3.165890 CGCGTACGAAGTGAATGTCTAA 58.834 45.455 21.65 0.00 45.73 2.10
275 276 1.043116 TCCCGGAGTAGGCACATGAG 61.043 60.000 0.73 0.00 0.00 2.90
279 280 1.982395 CTGTCCCGGAGTAGGCACA 60.982 63.158 0.73 0.00 0.00 4.57
339 340 1.351017 AGGCTGGAACGAAATCCTTCA 59.649 47.619 0.00 0.00 40.35 3.02
381 383 3.357079 CACCACCCAAGCAGTCGC 61.357 66.667 0.00 0.00 38.99 5.19
382 384 2.111043 ACACCACCCAAGCAGTCG 59.889 61.111 0.00 0.00 0.00 4.18
383 385 0.886490 CTCACACCACCCAAGCAGTC 60.886 60.000 0.00 0.00 0.00 3.51
384 386 1.149174 CTCACACCACCCAAGCAGT 59.851 57.895 0.00 0.00 0.00 4.40
385 387 0.604780 CTCTCACACCACCCAAGCAG 60.605 60.000 0.00 0.00 0.00 4.24
386 388 1.053835 TCTCTCACACCACCCAAGCA 61.054 55.000 0.00 0.00 0.00 3.91
519 521 5.640189 TCACGGTTTTTGACACCTAAAAA 57.360 34.783 0.00 0.00 35.36 1.94
520 522 5.838531 ATCACGGTTTTTGACACCTAAAA 57.161 34.783 0.00 0.00 31.32 1.52
521 523 5.838531 AATCACGGTTTTTGACACCTAAA 57.161 34.783 0.00 0.00 31.32 1.85
522 524 6.289834 TCTAATCACGGTTTTTGACACCTAA 58.710 36.000 0.00 0.00 31.32 2.69
523 525 5.856156 TCTAATCACGGTTTTTGACACCTA 58.144 37.500 0.00 0.00 31.32 3.08
524 526 4.710324 TCTAATCACGGTTTTTGACACCT 58.290 39.130 0.00 0.00 31.32 4.00
525 527 5.622770 ATCTAATCACGGTTTTTGACACC 57.377 39.130 0.00 0.00 0.00 4.16
526 528 8.500773 TCTAAATCTAATCACGGTTTTTGACAC 58.499 33.333 0.00 0.00 0.00 3.67
527 529 8.610248 TCTAAATCTAATCACGGTTTTTGACA 57.390 30.769 0.00 0.00 0.00 3.58
528 530 8.932791 TCTCTAAATCTAATCACGGTTTTTGAC 58.067 33.333 0.00 0.00 0.00 3.18
529 531 9.667107 ATCTCTAAATCTAATCACGGTTTTTGA 57.333 29.630 0.00 0.00 0.00 2.69
548 550 6.938698 TTGTACAACCCACCTAATCTCTAA 57.061 37.500 3.59 0.00 0.00 2.10
702 704 2.276116 GCGCGGATAGGAGATGGGA 61.276 63.158 8.83 0.00 0.00 4.37
764 772 3.868200 AAAGCTGGCCGTTGGGAGG 62.868 63.158 0.00 0.00 34.06 4.30
825 839 0.890542 TTGTGGTGCCATGAGAGTGC 60.891 55.000 0.00 0.00 0.00 4.40
844 858 0.531974 CTTGTACTGGCGTGGTGTGT 60.532 55.000 0.00 0.00 0.00 3.72
914 935 1.058404 GTGTGACGTCTAAGTTCGCC 58.942 55.000 17.92 0.00 0.00 5.54
982 1013 3.138205 CATCGATGGATCTACGTAGGC 57.862 52.381 22.01 14.06 0.00 3.93
1204 1247 2.022129 CACGCCCGAACACAGAGAC 61.022 63.158 0.00 0.00 0.00 3.36
1242 1285 5.947228 TTACTGTATAGTAGCGCCGTTAT 57.053 39.130 2.29 1.82 40.33 1.89
1259 1302 6.930722 TCCATGCAGACACATGTATATTACTG 59.069 38.462 0.00 3.71 44.88 2.74
1312 1438 8.149647 TCTAACTATCAACAAAAGTTTACGGGA 58.850 33.333 0.00 0.00 35.23 5.14
1350 1476 1.000283 CTAGTGATCGATGTGCCTCCC 60.000 57.143 0.54 0.00 0.00 4.30
1358 1484 4.309933 TGGCTTATTGCTAGTGATCGATG 58.690 43.478 0.54 0.00 42.39 3.84
1360 1486 4.141937 ACTTGGCTTATTGCTAGTGATCGA 60.142 41.667 0.00 0.00 42.39 3.59
1449 1592 4.692475 GTGCGGCCGTTACCCAGT 62.692 66.667 28.70 0.00 0.00 4.00
1543 1686 9.237187 TGCAGGAGTATACATATTTCACAAAAA 57.763 29.630 5.50 0.00 0.00 1.94
1544 1687 8.673711 GTGCAGGAGTATACATATTTCACAAAA 58.326 33.333 5.50 0.00 0.00 2.44
1545 1688 7.011016 CGTGCAGGAGTATACATATTTCACAAA 59.989 37.037 5.50 0.00 0.00 2.83
1546 1689 6.478673 CGTGCAGGAGTATACATATTTCACAA 59.521 38.462 5.50 0.00 0.00 3.33
1547 1690 5.983118 CGTGCAGGAGTATACATATTTCACA 59.017 40.000 5.50 0.00 0.00 3.58
1548 1691 5.983720 ACGTGCAGGAGTATACATATTTCAC 59.016 40.000 14.38 5.15 0.00 3.18
1549 1692 6.156748 ACGTGCAGGAGTATACATATTTCA 57.843 37.500 14.38 0.00 0.00 2.69
1550 1693 8.758633 ATTACGTGCAGGAGTATACATATTTC 57.241 34.615 14.38 0.00 0.00 2.17
1624 1767 4.637288 TTTAGGAATGGAGGGAGTAGGA 57.363 45.455 0.00 0.00 0.00 2.94
1625 1768 8.680820 TTATATTTAGGAATGGAGGGAGTAGG 57.319 38.462 0.00 0.00 0.00 3.18
1654 1797 9.513906 TGTGGTTCATAATGAAATCTCTACAAA 57.486 29.630 0.00 0.00 38.22 2.83
1655 1798 9.685276 ATGTGGTTCATAATGAAATCTCTACAA 57.315 29.630 0.00 0.00 38.22 2.41
1659 1802 9.347240 CCTTATGTGGTTCATAATGAAATCTCT 57.653 33.333 0.00 0.00 44.69 3.10
1660 1803 9.342308 TCCTTATGTGGTTCATAATGAAATCTC 57.658 33.333 0.00 0.00 44.69 2.75
1661 1804 9.872684 ATCCTTATGTGGTTCATAATGAAATCT 57.127 29.630 8.66 0.00 44.69 2.40
1662 1805 9.903682 CATCCTTATGTGGTTCATAATGAAATC 57.096 33.333 8.66 0.00 44.69 2.17
1663 1806 9.425248 ACATCCTTATGTGGTTCATAATGAAAT 57.575 29.630 8.66 0.00 44.79 2.17
1664 1807 8.821686 ACATCCTTATGTGGTTCATAATGAAA 57.178 30.769 8.66 0.00 44.79 2.69
1669 1812 9.958180 CCATATACATCCTTATGTGGTTCATAA 57.042 33.333 1.34 0.00 45.99 1.90
1670 1813 9.332713 TCCATATACATCCTTATGTGGTTCATA 57.667 33.333 1.34 0.00 45.99 2.15
1671 1814 8.218423 TCCATATACATCCTTATGTGGTTCAT 57.782 34.615 1.34 0.00 45.99 2.57
1672 1815 7.625498 TCCATATACATCCTTATGTGGTTCA 57.375 36.000 1.34 0.00 45.99 3.18
1673 1816 7.066284 GCATCCATATACATCCTTATGTGGTTC 59.934 40.741 1.34 0.00 45.99 3.62
1674 1817 6.886459 GCATCCATATACATCCTTATGTGGTT 59.114 38.462 1.34 0.00 45.99 3.67
1675 1818 6.012596 TGCATCCATATACATCCTTATGTGGT 60.013 38.462 1.34 0.00 45.99 4.16
1676 1819 6.417258 TGCATCCATATACATCCTTATGTGG 58.583 40.000 1.34 0.67 45.99 4.17
1677 1820 8.515695 AATGCATCCATATACATCCTTATGTG 57.484 34.615 0.00 0.00 45.99 3.21
1682 1825 9.458727 CTCTAAAATGCATCCATATACATCCTT 57.541 33.333 0.00 0.00 0.00 3.36
1683 1826 8.609483 ACTCTAAAATGCATCCATATACATCCT 58.391 33.333 0.00 0.00 0.00 3.24
1684 1827 8.671921 CACTCTAAAATGCATCCATATACATCC 58.328 37.037 0.00 0.00 0.00 3.51
1685 1828 9.224267 ACACTCTAAAATGCATCCATATACATC 57.776 33.333 0.00 0.00 0.00 3.06
1692 1835 9.797642 TGAATATACACTCTAAAATGCATCCAT 57.202 29.630 0.00 0.00 0.00 3.41
1693 1836 9.056005 GTGAATATACACTCTAAAATGCATCCA 57.944 33.333 0.00 0.00 37.73 3.41
1694 1837 9.277783 AGTGAATATACACTCTAAAATGCATCC 57.722 33.333 0.00 0.00 46.36 3.51
1708 1851 5.107837 CGGAGCGAAATGAGTGAATATACAC 60.108 44.000 0.00 0.00 40.60 2.90
1709 1852 4.982295 CGGAGCGAAATGAGTGAATATACA 59.018 41.667 0.00 0.00 0.00 2.29
1710 1853 4.982916 ACGGAGCGAAATGAGTGAATATAC 59.017 41.667 0.00 0.00 0.00 1.47
1711 1854 5.196341 ACGGAGCGAAATGAGTGAATATA 57.804 39.130 0.00 0.00 0.00 0.86
1712 1855 4.060038 ACGGAGCGAAATGAGTGAATAT 57.940 40.909 0.00 0.00 0.00 1.28
1713 1856 3.520290 ACGGAGCGAAATGAGTGAATA 57.480 42.857 0.00 0.00 0.00 1.75
1714 1857 2.386661 ACGGAGCGAAATGAGTGAAT 57.613 45.000 0.00 0.00 0.00 2.57
1715 1858 3.186909 CATACGGAGCGAAATGAGTGAA 58.813 45.455 0.00 0.00 0.00 3.18
1716 1859 2.165641 ACATACGGAGCGAAATGAGTGA 59.834 45.455 0.00 0.00 31.99 3.41
1717 1860 2.540515 ACATACGGAGCGAAATGAGTG 58.459 47.619 0.00 0.00 31.99 3.51
1718 1861 2.961526 ACATACGGAGCGAAATGAGT 57.038 45.000 0.00 0.00 31.99 3.41
1719 1862 3.966154 ACTACATACGGAGCGAAATGAG 58.034 45.455 0.00 0.00 31.99 2.90
1720 1863 3.243301 GGACTACATACGGAGCGAAATGA 60.243 47.826 0.00 0.00 31.99 2.57
1721 1864 3.050619 GGACTACATACGGAGCGAAATG 58.949 50.000 0.00 0.00 33.06 2.32
1722 1865 2.691526 TGGACTACATACGGAGCGAAAT 59.308 45.455 0.00 0.00 0.00 2.17
1723 1866 2.093890 TGGACTACATACGGAGCGAAA 58.906 47.619 0.00 0.00 0.00 3.46
1724 1867 1.753930 TGGACTACATACGGAGCGAA 58.246 50.000 0.00 0.00 0.00 4.70
1725 1868 1.977056 ATGGACTACATACGGAGCGA 58.023 50.000 0.00 0.00 38.26 4.93
1726 1869 3.072211 TCTATGGACTACATACGGAGCG 58.928 50.000 0.00 0.00 41.03 5.03
1727 1870 4.760715 TCTTCTATGGACTACATACGGAGC 59.239 45.833 0.00 0.00 41.03 4.70
1728 1871 6.879276 TTCTTCTATGGACTACATACGGAG 57.121 41.667 0.00 0.00 41.03 4.63
1729 1872 7.232188 AGATTCTTCTATGGACTACATACGGA 58.768 38.462 0.00 0.00 41.03 4.69
1730 1873 7.362229 GGAGATTCTTCTATGGACTACATACGG 60.362 44.444 0.00 0.00 41.03 4.02
1731 1874 7.175119 TGGAGATTCTTCTATGGACTACATACG 59.825 40.741 0.00 0.00 41.03 3.06
1732 1875 8.301002 GTGGAGATTCTTCTATGGACTACATAC 58.699 40.741 0.00 0.00 41.03 2.39
1733 1876 8.004801 TGTGGAGATTCTTCTATGGACTACATA 58.995 37.037 0.00 0.00 41.03 2.29
1734 1877 6.841229 TGTGGAGATTCTTCTATGGACTACAT 59.159 38.462 0.00 0.00 43.68 2.29
1735 1878 6.194967 TGTGGAGATTCTTCTATGGACTACA 58.805 40.000 0.00 0.00 30.30 2.74
1736 1879 6.716934 TGTGGAGATTCTTCTATGGACTAC 57.283 41.667 0.00 0.00 30.30 2.73
1737 1880 7.633772 GCTTTGTGGAGATTCTTCTATGGACTA 60.634 40.741 0.00 0.00 30.30 2.59
1738 1881 6.627087 TTTGTGGAGATTCTTCTATGGACT 57.373 37.500 0.00 0.00 30.30 3.85
1739 1882 5.295540 GCTTTGTGGAGATTCTTCTATGGAC 59.704 44.000 0.00 0.00 30.30 4.02
1740 1883 5.431765 GCTTTGTGGAGATTCTTCTATGGA 58.568 41.667 0.00 0.00 30.30 3.41
1741 1884 4.578105 GGCTTTGTGGAGATTCTTCTATGG 59.422 45.833 0.00 0.00 30.30 2.74
1742 1885 5.435291 AGGCTTTGTGGAGATTCTTCTATG 58.565 41.667 0.00 0.00 30.30 2.23
1743 1886 5.707066 AGGCTTTGTGGAGATTCTTCTAT 57.293 39.130 0.00 0.00 30.30 1.98
1744 1887 5.505181 AAGGCTTTGTGGAGATTCTTCTA 57.495 39.130 0.00 0.00 30.30 2.10
1745 1888 4.379302 AAGGCTTTGTGGAGATTCTTCT 57.621 40.909 0.00 0.00 33.88 2.85
1746 1889 8.457238 AATATAAGGCTTTGTGGAGATTCTTC 57.543 34.615 4.45 0.00 0.00 2.87
1747 1890 8.829373 AAATATAAGGCTTTGTGGAGATTCTT 57.171 30.769 4.45 0.00 0.00 2.52
1748 1891 9.343539 GTAAATATAAGGCTTTGTGGAGATTCT 57.656 33.333 4.45 0.00 0.00 2.40
1749 1892 8.283291 CGTAAATATAAGGCTTTGTGGAGATTC 58.717 37.037 4.45 0.00 0.00 2.52
1750 1893 7.990886 TCGTAAATATAAGGCTTTGTGGAGATT 59.009 33.333 4.45 0.00 0.00 2.40
1751 1894 7.506114 TCGTAAATATAAGGCTTTGTGGAGAT 58.494 34.615 4.45 0.00 0.00 2.75
1752 1895 6.880484 TCGTAAATATAAGGCTTTGTGGAGA 58.120 36.000 4.45 0.00 0.00 3.71
1753 1896 7.548196 TTCGTAAATATAAGGCTTTGTGGAG 57.452 36.000 4.45 0.00 0.00 3.86
1754 1897 7.012894 CCATTCGTAAATATAAGGCTTTGTGGA 59.987 37.037 4.45 0.00 0.00 4.02
1755 1898 7.012894 TCCATTCGTAAATATAAGGCTTTGTGG 59.987 37.037 4.45 0.00 0.00 4.17
1756 1899 7.925993 TCCATTCGTAAATATAAGGCTTTGTG 58.074 34.615 4.45 0.00 0.00 3.33
1757 1900 8.514330 TTCCATTCGTAAATATAAGGCTTTGT 57.486 30.769 4.45 0.00 0.00 2.83
1758 1901 8.076178 CCTTCCATTCGTAAATATAAGGCTTTG 58.924 37.037 4.45 0.00 33.02 2.77
1759 1902 7.996644 TCCTTCCATTCGTAAATATAAGGCTTT 59.003 33.333 4.45 0.00 36.64 3.51
1760 1903 7.514721 TCCTTCCATTCGTAAATATAAGGCTT 58.485 34.615 4.58 4.58 36.64 4.35
1761 1904 7.074653 TCCTTCCATTCGTAAATATAAGGCT 57.925 36.000 0.00 0.00 36.64 4.58
1762 1905 6.935208 ACTCCTTCCATTCGTAAATATAAGGC 59.065 38.462 0.00 0.00 36.64 4.35
1763 1906 9.420551 GTACTCCTTCCATTCGTAAATATAAGG 57.579 37.037 0.00 0.00 37.33 2.69
1764 1907 9.976511 TGTACTCCTTCCATTCGTAAATATAAG 57.023 33.333 0.00 0.00 0.00 1.73
1769 1912 8.647796 TGATATGTACTCCTTCCATTCGTAAAT 58.352 33.333 0.00 0.00 0.00 1.40
1770 1913 8.014070 TGATATGTACTCCTTCCATTCGTAAA 57.986 34.615 0.00 0.00 0.00 2.01
1771 1914 7.287005 ACTGATATGTACTCCTTCCATTCGTAA 59.713 37.037 0.00 0.00 0.00 3.18
1772 1915 6.776116 ACTGATATGTACTCCTTCCATTCGTA 59.224 38.462 0.00 0.00 0.00 3.43
1773 1916 5.598830 ACTGATATGTACTCCTTCCATTCGT 59.401 40.000 0.00 0.00 0.00 3.85
1774 1917 6.090483 ACTGATATGTACTCCTTCCATTCG 57.910 41.667 0.00 0.00 0.00 3.34
1775 1918 7.093992 GCTACTGATATGTACTCCTTCCATTC 58.906 42.308 0.00 0.00 0.00 2.67
1776 1919 6.554982 TGCTACTGATATGTACTCCTTCCATT 59.445 38.462 0.00 0.00 0.00 3.16
1777 1920 6.077993 TGCTACTGATATGTACTCCTTCCAT 58.922 40.000 0.00 0.00 0.00 3.41
1778 1921 5.454966 TGCTACTGATATGTACTCCTTCCA 58.545 41.667 0.00 0.00 0.00 3.53
1779 1922 6.393990 CATGCTACTGATATGTACTCCTTCC 58.606 44.000 0.00 0.00 0.00 3.46
1780 1923 5.866633 GCATGCTACTGATATGTACTCCTTC 59.133 44.000 11.37 0.00 0.00 3.46
1781 1924 5.305386 TGCATGCTACTGATATGTACTCCTT 59.695 40.000 20.33 0.00 0.00 3.36
1782 1925 4.835056 TGCATGCTACTGATATGTACTCCT 59.165 41.667 20.33 0.00 0.00 3.69
1783 1926 5.139435 TGCATGCTACTGATATGTACTCC 57.861 43.478 20.33 0.00 0.00 3.85
1784 1927 6.644191 CATGCATGCTACTGATATGTACTC 57.356 41.667 20.33 0.00 0.00 2.59
1808 1951 6.559810 TGTTGAGTGTTGACCTTTAAACATG 58.440 36.000 0.00 0.00 38.47 3.21
1809 1952 6.377146 ACTGTTGAGTGTTGACCTTTAAACAT 59.623 34.615 0.00 0.00 38.47 2.71
1810 1953 5.708230 ACTGTTGAGTGTTGACCTTTAAACA 59.292 36.000 0.00 0.00 34.01 2.83
1811 1954 6.027749 CACTGTTGAGTGTTGACCTTTAAAC 58.972 40.000 0.00 0.00 44.15 2.01
1853 1996 2.562298 TGTAATCAACCCGTTCGTAGGT 59.438 45.455 0.00 0.00 38.27 3.08
1854 1997 3.119388 TCTGTAATCAACCCGTTCGTAGG 60.119 47.826 0.00 0.00 0.00 3.18
1856 1999 4.236935 GTTCTGTAATCAACCCGTTCGTA 58.763 43.478 0.00 0.00 0.00 3.43
1858 2001 2.091588 CGTTCTGTAATCAACCCGTTCG 59.908 50.000 0.00 0.00 0.00 3.95
1862 2005 2.409975 ACACGTTCTGTAATCAACCCG 58.590 47.619 0.00 0.00 0.00 5.28
1863 2006 4.823790 AAACACGTTCTGTAATCAACCC 57.176 40.909 0.00 0.00 30.51 4.11
1904 2067 6.603997 ACCGGTAATTAATTTTGGTGCATCTA 59.396 34.615 4.49 0.00 0.00 1.98
1906 2069 5.656480 ACCGGTAATTAATTTTGGTGCATC 58.344 37.500 4.49 0.00 0.00 3.91
1907 2070 5.669164 ACCGGTAATTAATTTTGGTGCAT 57.331 34.783 4.49 0.00 0.00 3.96
1908 2071 5.230942 CAACCGGTAATTAATTTTGGTGCA 58.769 37.500 8.00 0.00 0.00 4.57
1909 2072 4.627900 CCAACCGGTAATTAATTTTGGTGC 59.372 41.667 8.00 0.00 0.00 5.01
1910 2073 5.785243 ACCAACCGGTAATTAATTTTGGTG 58.215 37.500 23.93 12.40 46.71 4.17
2010 2259 3.181514 ACCGTTGTCGTTGTTTTCTTCTG 60.182 43.478 0.00 0.00 35.01 3.02
2040 2289 6.275144 TGGAATAAAACTCCCTTTACCCTGTA 59.725 38.462 0.00 0.00 31.32 2.74
2041 2290 5.075344 TGGAATAAAACTCCCTTTACCCTGT 59.925 40.000 0.00 0.00 31.32 4.00
2063 2312 5.468072 GGAGTGCAATCTTGTCACTATATGG 59.532 44.000 14.60 0.00 41.83 2.74
2064 2313 6.286758 AGGAGTGCAATCTTGTCACTATATG 58.713 40.000 14.60 0.00 41.83 1.78
2065 2314 6.491714 AGGAGTGCAATCTTGTCACTATAT 57.508 37.500 14.60 6.46 41.83 0.86
2066 2315 5.939764 AGGAGTGCAATCTTGTCACTATA 57.060 39.130 14.60 0.00 41.83 1.31
2081 2331 7.652105 TCACGATCTTGTATTAATTAGGAGTGC 59.348 37.037 0.00 0.00 0.00 4.40
2084 2334 9.751542 AACTCACGATCTTGTATTAATTAGGAG 57.248 33.333 0.00 0.00 0.00 3.69
2088 2338 9.863845 TGTCAACTCACGATCTTGTATTAATTA 57.136 29.630 0.00 0.00 0.00 1.40
2089 2339 8.771920 TGTCAACTCACGATCTTGTATTAATT 57.228 30.769 0.00 0.00 0.00 1.40
2090 2340 8.771920 TTGTCAACTCACGATCTTGTATTAAT 57.228 30.769 0.00 0.00 0.00 1.40
2091 2341 8.655970 CATTGTCAACTCACGATCTTGTATTAA 58.344 33.333 0.00 0.00 0.00 1.40
2137 2387 6.417191 TTCAGGAAATCAACGCAATACTAC 57.583 37.500 0.00 0.00 0.00 2.73
2224 2485 7.816031 ACATTCTGGATTAATTGCTTGTCTTTG 59.184 33.333 0.00 0.00 0.00 2.77
2252 2513 1.002033 GTCATAATCGCGTCCGGTAGT 60.002 52.381 5.77 0.00 34.56 2.73
2266 2527 7.450634 AGTTCTAGGTACAGTGTCAAGTCATAA 59.549 37.037 0.00 0.00 0.00 1.90
2309 2570 3.626729 GGCCCACTAGTTCTAGGTACAGA 60.627 52.174 10.93 0.00 0.00 3.41
2350 2611 3.120060 GCTCATGTTTCCAGTACTTGCTG 60.120 47.826 0.00 0.00 36.31 4.41
2359 2622 2.636830 AGGATTCGCTCATGTTTCCAG 58.363 47.619 0.00 0.00 0.00 3.86
2360 2623 2.749076 CAAGGATTCGCTCATGTTTCCA 59.251 45.455 0.00 0.00 0.00 3.53
2361 2624 3.009723 TCAAGGATTCGCTCATGTTTCC 58.990 45.455 0.00 0.00 0.00 3.13
2379 2642 6.352016 AGATTAGCTCTCAAGTCAACTCAA 57.648 37.500 0.00 0.00 0.00 3.02
2465 2737 0.721718 GGTGTGCAAGCGATGTCTAC 59.278 55.000 0.00 0.00 0.00 2.59
2475 2747 4.704540 TCATGGGTTAATTAGGTGTGCAAG 59.295 41.667 0.00 0.00 0.00 4.01
2481 2753 8.519799 ACAAGTATTCATGGGTTAATTAGGTG 57.480 34.615 0.00 0.00 0.00 4.00
2511 2793 2.430332 CCAAGAAAAGGCAAACCAGACA 59.570 45.455 0.00 0.00 39.06 3.41
2516 2798 2.224042 CCAGACCAAGAAAAGGCAAACC 60.224 50.000 0.00 0.00 0.00 3.27
2517 2803 2.693074 TCCAGACCAAGAAAAGGCAAAC 59.307 45.455 0.00 0.00 0.00 2.93
2530 2818 4.357947 GCTCGCGTGTCCAGACCA 62.358 66.667 5.77 0.00 0.00 4.02
2569 2914 0.817013 TGCAAATCGAATCAAGGCCC 59.183 50.000 0.00 0.00 0.00 5.80
2570 2915 1.202336 CCTGCAAATCGAATCAAGGCC 60.202 52.381 0.00 0.00 0.00 5.19
2574 2919 3.145286 TGTCACCTGCAAATCGAATCAA 58.855 40.909 0.00 0.00 0.00 2.57
2575 2920 2.777094 TGTCACCTGCAAATCGAATCA 58.223 42.857 0.00 0.00 0.00 2.57
2576 2921 3.189287 ACTTGTCACCTGCAAATCGAATC 59.811 43.478 0.00 0.00 0.00 2.52
2577 2922 3.149196 ACTTGTCACCTGCAAATCGAAT 58.851 40.909 0.00 0.00 0.00 3.34
2580 2925 1.136252 CGACTTGTCACCTGCAAATCG 60.136 52.381 1.59 0.00 38.76 3.34
2618 2963 2.447408 TCTCCTCCGTTAGGTGCATA 57.553 50.000 0.00 0.00 46.62 3.14
3281 3626 2.158959 GTTCCAGTCGTCGATGCCG 61.159 63.158 0.00 0.00 37.07 5.69
3369 3714 2.434884 ACGCATCCGCTCCTTGTG 60.435 61.111 0.00 0.00 38.22 3.33
3612 3957 5.715279 CCATGCATGAGGAAGATAAATGGAT 59.285 40.000 28.31 0.00 35.16 3.41
3662 4007 0.101399 CGATCGGCAGTGTAGAAGCT 59.899 55.000 7.38 0.00 0.00 3.74
3663 4008 0.100682 TCGATCGGCAGTGTAGAAGC 59.899 55.000 16.41 0.00 0.00 3.86
3666 4011 1.460504 AACTCGATCGGCAGTGTAGA 58.539 50.000 16.41 0.00 0.00 2.59
3667 4012 1.920574 CAAACTCGATCGGCAGTGTAG 59.079 52.381 16.41 5.71 0.00 2.74
3668 4013 1.271379 ACAAACTCGATCGGCAGTGTA 59.729 47.619 16.41 0.00 0.00 2.90
3669 4014 0.033504 ACAAACTCGATCGGCAGTGT 59.966 50.000 16.41 11.85 0.00 3.55
3670 4015 1.654105 GTACAAACTCGATCGGCAGTG 59.346 52.381 16.41 11.22 0.00 3.66
3705 4050 1.062258 ATACAAACCACGCACGTACG 58.938 50.000 15.01 15.01 39.50 3.67
3706 4051 1.794116 ACATACAAACCACGCACGTAC 59.206 47.619 0.00 0.00 0.00 3.67
3707 4052 1.793532 CACATACAAACCACGCACGTA 59.206 47.619 0.00 0.00 0.00 3.57
3708 4053 0.584396 CACATACAAACCACGCACGT 59.416 50.000 0.00 0.00 0.00 4.49
3736 4084 4.469227 ACAGACTAACAGGAGAATGCATCT 59.531 41.667 0.00 0.00 42.61 2.90
3737 4085 4.569966 CACAGACTAACAGGAGAATGCATC 59.430 45.833 0.00 0.00 0.00 3.91
3738 4086 4.019860 ACACAGACTAACAGGAGAATGCAT 60.020 41.667 0.00 0.00 0.00 3.96
3783 4135 4.330250 AGCTCGGTTGTGTTACTACTAGA 58.670 43.478 0.00 0.00 0.00 2.43
3913 4266 6.165700 AGCTTTGAAAGAATCACCATTTGT 57.834 33.333 9.48 0.00 37.92 2.83
4012 4368 8.740906 TCCCATAATATAAAAACGCTTTTGACA 58.259 29.630 6.79 0.00 35.50 3.58
4017 4373 6.543100 TCCGTCCCATAATATAAAAACGCTTT 59.457 34.615 0.00 0.00 0.00 3.51
4018 4374 6.056884 TCCGTCCCATAATATAAAAACGCTT 58.943 36.000 0.00 0.00 0.00 4.68
4019 4375 5.613329 TCCGTCCCATAATATAAAAACGCT 58.387 37.500 0.00 0.00 0.00 5.07
4020 4376 5.106830 CCTCCGTCCCATAATATAAAAACGC 60.107 44.000 0.00 0.00 0.00 4.84
4021 4377 5.410439 CCCTCCGTCCCATAATATAAAAACG 59.590 44.000 0.00 0.00 0.00 3.60
4022 4378 6.536447 TCCCTCCGTCCCATAATATAAAAAC 58.464 40.000 0.00 0.00 0.00 2.43
4023 4379 6.330778 ACTCCCTCCGTCCCATAATATAAAAA 59.669 38.462 0.00 0.00 0.00 1.94
4024 4380 5.847817 ACTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
4025 4381 5.408824 ACTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
4026 4382 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4027 4383 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4028 4384 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4029 4385 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
4030 4386 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
4031 4387 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
4032 4388 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
4033 4389 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
4034 4390 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
4035 4391 0.248565 GTTTGTACTCCCTCCGTCCC 59.751 60.000 0.00 0.00 0.00 4.46
4036 4392 0.248565 GGTTTGTACTCCCTCCGTCC 59.751 60.000 0.00 0.00 0.00 4.79
4037 4393 0.971386 TGGTTTGTACTCCCTCCGTC 59.029 55.000 0.00 0.00 0.00 4.79
4038 4394 1.652947 ATGGTTTGTACTCCCTCCGT 58.347 50.000 0.00 0.00 0.00 4.69
4039 4395 3.528532 GTTATGGTTTGTACTCCCTCCG 58.471 50.000 0.00 0.00 0.00 4.63
4040 4396 3.196254 TCGTTATGGTTTGTACTCCCTCC 59.804 47.826 0.00 0.00 0.00 4.30
4041 4397 4.460948 TCGTTATGGTTTGTACTCCCTC 57.539 45.455 0.00 0.00 0.00 4.30
4045 4401 5.464389 AGTGTGTTCGTTATGGTTTGTACTC 59.536 40.000 0.00 0.00 0.00 2.59
4046 4402 5.362263 AGTGTGTTCGTTATGGTTTGTACT 58.638 37.500 0.00 0.00 0.00 2.73
4074 4430 1.829222 TCTGGGTACTTTTAGAGGCCG 59.171 52.381 0.00 0.00 0.00 6.13
4087 4443 6.275692 TGATTCCTATAGTGAGTCTGGGTA 57.724 41.667 11.97 0.00 0.00 3.69
4094 4450 8.549731 TCGGACTATATGATTCCTATAGTGAGT 58.450 37.037 19.98 4.75 40.69 3.41
4118 4576 2.218759 GCTTGCCGAGTAATATGTGTCG 59.781 50.000 0.00 0.00 0.00 4.35
4133 4595 2.880268 TGTCATGCTATATGTGCTTGCC 59.120 45.455 11.12 4.16 36.12 4.52
4165 4627 7.791029 TGTGACTTGTTGCTTCTATATATGGA 58.209 34.615 0.00 0.00 0.00 3.41
4166 4628 8.613060 ATGTGACTTGTTGCTTCTATATATGG 57.387 34.615 0.00 0.00 0.00 2.74
4283 4745 7.941431 TGGTTTTAAACTTGTTCTTGGAGTA 57.059 32.000 7.79 0.00 0.00 2.59
4359 4821 3.347216 ACTTGTAGCTTTCATTGCGGAT 58.653 40.909 0.00 0.00 35.28 4.18
4365 4827 5.532406 TGCTTCTGAACTTGTAGCTTTCATT 59.468 36.000 0.00 0.00 33.15 2.57
4372 4834 3.669023 GCATGTGCTTCTGAACTTGTAGC 60.669 47.826 0.00 0.00 38.21 3.58
4422 4884 5.571047 GCTTGAAACTTACCCCTAGTAGCTT 60.571 44.000 0.00 0.00 30.92 3.74
4469 4931 7.065803 GCCATAAGCAACACATTCTAACTTAGA 59.934 37.037 0.00 0.00 42.97 2.10
4568 8133 3.131577 GCAACCACCATTGATGTCATCAT 59.868 43.478 16.19 4.43 39.39 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.