Multiple sequence alignment - TraesCS2A01G527500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G527500 chr2A 100.000 4804 0 0 1 4804 746964353 746969156 0.000000e+00 8872.0
1 TraesCS2A01G527500 chr2A 91.389 360 22 1 3249 3599 746967424 746967783 7.230000e-133 484.0
2 TraesCS2A01G527500 chr2A 91.389 360 22 1 3072 3431 746967601 746967951 7.230000e-133 484.0
3 TraesCS2A01G527500 chr2A 89.071 183 11 1 3426 3599 746967424 746967606 8.100000e-53 219.0
4 TraesCS2A01G527500 chr2A 89.071 183 11 1 3072 3254 746967778 746967951 8.100000e-53 219.0
5 TraesCS2A01G527500 chr2A 89.143 175 15 3 1 174 746945317 746945488 1.050000e-51 215.0
6 TraesCS2A01G527500 chr2A 82.775 209 27 5 256 459 746945506 746945710 1.370000e-40 178.0
7 TraesCS2A01G527500 chr2D 91.598 4523 247 62 343 4804 616948504 616952954 0.000000e+00 6124.0
8 TraesCS2A01G527500 chr2D 91.944 360 20 1 3072 3431 616951402 616951752 3.340000e-136 496.0
9 TraesCS2A01G527500 chr2D 90.556 360 25 1 3249 3599 616951225 616951584 7.280000e-128 468.0
10 TraesCS2A01G527500 chr2D 89.617 183 10 1 3072 3254 616951579 616951752 1.740000e-54 224.0
11 TraesCS2A01G527500 chr2D 88.525 183 12 6 3426 3599 616951225 616951407 3.770000e-51 213.0
12 TraesCS2A01G527500 chr2D 87.166 187 9 4 1 187 616948282 616948453 1.050000e-46 198.0
13 TraesCS2A01G527500 chr2D 95.833 48 2 0 205 252 616948437 616948484 1.430000e-10 78.7
14 TraesCS2A01G527500 chr2B 96.231 2733 71 14 2074 4804 752488168 752490870 0.000000e+00 4447.0
15 TraesCS2A01G527500 chr2B 87.066 1353 101 35 565 1895 752486594 752487894 0.000000e+00 1461.0
16 TraesCS2A01G527500 chr2B 89.838 679 52 10 323 992 752416170 752416840 0.000000e+00 856.0
17 TraesCS2A01G527500 chr2B 91.667 360 21 1 3072 3431 752489325 752489675 1.550000e-134 490.0
18 TraesCS2A01G527500 chr2B 90.833 360 24 1 3249 3599 752489148 752489507 1.560000e-129 473.0
19 TraesCS2A01G527500 chr2B 90.270 185 18 0 1081 1265 752459429 752459613 4.800000e-60 243.0
20 TraesCS2A01G527500 chr2B 89.617 183 10 1 3072 3254 752489502 752489675 1.740000e-54 224.0
21 TraesCS2A01G527500 chr2B 88.525 183 12 1 3426 3599 752489148 752489330 3.770000e-51 213.0
22 TraesCS2A01G527500 chr2B 87.634 186 10 2 1 186 752415976 752416148 2.270000e-48 204.0
23 TraesCS2A01G527500 chr2B 78.125 192 33 4 221 403 752478970 752479161 3.930000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G527500 chr2A 746964353 746969156 4803 False 2055.600000 8872 92.184000 1 4804 5 chr2A.!!$F2 4803
1 TraesCS2A01G527500 chr2D 616948282 616952954 4672 False 1114.528571 6124 90.748429 1 4804 7 chr2D.!!$F1 4803
2 TraesCS2A01G527500 chr2B 752486594 752490870 4276 False 1218.000000 4447 90.656500 565 4804 6 chr2B.!!$F4 4239
3 TraesCS2A01G527500 chr2B 752415976 752416840 864 False 530.000000 856 88.736000 1 992 2 chr2B.!!$F3 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 1.279496 TGTGAATAGTCCAGCAGGCT 58.721 50.0 0.00 0.0 33.74 4.58 F
1509 1535 0.036164 GGACACACATACCTGCCACA 59.964 55.0 0.00 0.0 0.00 4.17 F
2510 2678 0.107456 CTTCTGACACTGTGGCACCT 59.893 55.0 13.36 0.0 28.59 4.00 F
2856 3027 0.535102 AGCAAACTCCAGTGGTTCCG 60.535 55.0 9.54 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1545 0.034670 GCACCTGAGGCTGAGGATTT 60.035 55.000 27.47 0.67 34.37 2.17 R
2590 2761 0.447011 GTTGCTCTCTGATGCAGTGC 59.553 55.000 8.58 8.58 40.46 4.40 R
3701 3872 0.246635 TCCTACGCCTCTTGCTTGTC 59.753 55.000 0.00 0.00 38.05 3.18 R
4211 4383 1.266718 GCTTGGCAAACATGTCTTCGA 59.733 47.619 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.267014 AGCTAACTAGTAACTGACACAAGGAA 59.733 38.462 0.00 0.00 0.00 3.36
123 124 6.888632 AGCAGAGATATTTCAAGGTTGTGAAT 59.111 34.615 0.00 0.00 37.36 2.57
127 128 9.606631 AGAGATATTTCAAGGTTGTGAATAGTC 57.393 33.333 0.00 0.00 37.36 2.59
131 132 3.674997 TCAAGGTTGTGAATAGTCCAGC 58.325 45.455 0.00 0.00 0.00 4.85
132 133 3.072330 TCAAGGTTGTGAATAGTCCAGCA 59.928 43.478 0.00 0.00 0.00 4.41
133 134 3.340814 AGGTTGTGAATAGTCCAGCAG 57.659 47.619 0.00 0.00 0.00 4.24
134 135 2.026822 AGGTTGTGAATAGTCCAGCAGG 60.027 50.000 0.00 0.00 0.00 4.85
135 136 1.740025 GTTGTGAATAGTCCAGCAGGC 59.260 52.381 0.00 0.00 33.74 4.85
136 137 1.279496 TGTGAATAGTCCAGCAGGCT 58.721 50.000 0.00 0.00 33.74 4.58
137 138 1.630369 TGTGAATAGTCCAGCAGGCTT 59.370 47.619 0.00 0.00 33.74 4.35
138 139 2.012673 GTGAATAGTCCAGCAGGCTTG 58.987 52.381 0.00 0.00 33.74 4.01
168 169 6.727824 TTGATTAGCAGAGTAACTTCAAGC 57.272 37.500 0.00 0.00 0.00 4.01
174 175 3.556004 GCAGAGTAACTTCAAGCCAGAGT 60.556 47.826 0.00 0.00 0.00 3.24
178 179 5.717178 AGAGTAACTTCAAGCCAGAGTATCA 59.283 40.000 0.00 0.00 37.82 2.15
179 180 5.725362 AGTAACTTCAAGCCAGAGTATCAC 58.275 41.667 0.00 0.00 37.82 3.06
180 181 3.618690 ACTTCAAGCCAGAGTATCACC 57.381 47.619 0.00 0.00 37.82 4.02
181 182 2.237392 ACTTCAAGCCAGAGTATCACCC 59.763 50.000 0.00 0.00 37.82 4.61
182 183 1.951209 TCAAGCCAGAGTATCACCCA 58.049 50.000 0.00 0.00 37.82 4.51
183 184 2.481441 TCAAGCCAGAGTATCACCCAT 58.519 47.619 0.00 0.00 37.82 4.00
184 185 3.653164 TCAAGCCAGAGTATCACCCATA 58.347 45.455 0.00 0.00 37.82 2.74
185 186 3.388024 TCAAGCCAGAGTATCACCCATAC 59.612 47.826 0.00 0.00 37.82 2.39
187 188 3.658725 AGCCAGAGTATCACCCATACTT 58.341 45.455 0.00 0.00 46.76 2.24
188 189 3.643792 AGCCAGAGTATCACCCATACTTC 59.356 47.826 0.00 0.00 46.76 3.01
189 190 3.643792 GCCAGAGTATCACCCATACTTCT 59.356 47.826 0.00 0.00 46.76 2.85
190 191 4.101741 GCCAGAGTATCACCCATACTTCTT 59.898 45.833 0.00 0.00 46.76 2.52
191 192 5.396884 GCCAGAGTATCACCCATACTTCTTT 60.397 44.000 0.00 0.00 46.76 2.52
192 193 6.653989 CCAGAGTATCACCCATACTTCTTTT 58.346 40.000 0.00 0.00 46.76 2.27
193 194 7.112779 CCAGAGTATCACCCATACTTCTTTTT 58.887 38.462 0.00 0.00 46.76 1.94
236 237 3.008813 CCATACTGGATAGCTTCTGCCAT 59.991 47.826 0.00 0.00 40.96 4.40
252 253 1.742761 CCATCGACTTGCCAGTTCAT 58.257 50.000 0.00 0.00 31.22 2.57
253 254 2.086869 CCATCGACTTGCCAGTTCATT 58.913 47.619 0.00 0.00 31.22 2.57
255 256 3.310774 CCATCGACTTGCCAGTTCATTAG 59.689 47.826 0.00 0.00 31.22 1.73
258 259 3.197766 TCGACTTGCCAGTTCATTAGGAT 59.802 43.478 0.00 0.00 31.22 3.24
260 261 4.508124 CGACTTGCCAGTTCATTAGGATAC 59.492 45.833 0.00 0.00 31.22 2.24
261 262 5.675538 GACTTGCCAGTTCATTAGGATACT 58.324 41.667 0.00 0.00 42.33 2.12
262 263 6.461092 CGACTTGCCAGTTCATTAGGATACTA 60.461 42.308 0.00 0.00 40.42 1.82
263 264 6.926272 GACTTGCCAGTTCATTAGGATACTAG 59.074 42.308 0.00 0.00 41.71 2.57
264 265 7.418025 GACTTGCCAGTTCATTAGGATACTAGT 60.418 40.741 0.00 0.00 41.71 2.57
291 292 8.905702 GTGAACTGCACAAATTAGTTAGAAATG 58.094 33.333 0.00 0.00 46.91 2.32
292 293 7.594758 TGAACTGCACAAATTAGTTAGAAATGC 59.405 33.333 0.00 0.00 34.99 3.56
293 294 7.219484 ACTGCACAAATTAGTTAGAAATGCT 57.781 32.000 0.00 0.00 0.00 3.79
294 295 7.661040 ACTGCACAAATTAGTTAGAAATGCTT 58.339 30.769 0.00 0.00 0.00 3.91
295 296 8.143835 ACTGCACAAATTAGTTAGAAATGCTTT 58.856 29.630 0.00 0.00 0.00 3.51
296 297 8.519492 TGCACAAATTAGTTAGAAATGCTTTC 57.481 30.769 0.00 1.72 39.96 2.62
297 298 7.325821 TGCACAAATTAGTTAGAAATGCTTTCG 59.674 33.333 0.00 0.00 44.29 3.46
298 299 7.537306 GCACAAATTAGTTAGAAATGCTTTCGA 59.463 33.333 0.00 0.00 44.29 3.71
299 300 9.393249 CACAAATTAGTTAGAAATGCTTTCGAA 57.607 29.630 0.00 0.00 44.29 3.71
305 306 9.773328 TTAGTTAGAAATGCTTTCGAATTGATG 57.227 29.630 0.00 0.00 44.29 3.07
306 307 7.820648 AGTTAGAAATGCTTTCGAATTGATGT 58.179 30.769 0.00 0.00 44.29 3.06
307 308 8.946085 AGTTAGAAATGCTTTCGAATTGATGTA 58.054 29.630 0.00 0.00 44.29 2.29
308 309 9.000018 GTTAGAAATGCTTTCGAATTGATGTAC 58.000 33.333 0.00 0.00 44.29 2.90
309 310 6.555315 AGAAATGCTTTCGAATTGATGTACC 58.445 36.000 0.00 0.00 44.29 3.34
310 311 6.375455 AGAAATGCTTTCGAATTGATGTACCT 59.625 34.615 0.00 0.00 44.29 3.08
311 312 4.944962 TGCTTTCGAATTGATGTACCTG 57.055 40.909 0.00 0.00 0.00 4.00
312 313 4.323417 TGCTTTCGAATTGATGTACCTGT 58.677 39.130 0.00 0.00 0.00 4.00
313 314 4.759693 TGCTTTCGAATTGATGTACCTGTT 59.240 37.500 0.00 0.00 0.00 3.16
314 315 5.088739 GCTTTCGAATTGATGTACCTGTTG 58.911 41.667 0.00 0.00 0.00 3.33
315 316 5.334879 GCTTTCGAATTGATGTACCTGTTGT 60.335 40.000 0.00 0.00 0.00 3.32
316 317 6.128391 GCTTTCGAATTGATGTACCTGTTGTA 60.128 38.462 0.00 0.00 0.00 2.41
317 318 7.414098 GCTTTCGAATTGATGTACCTGTTGTAT 60.414 37.037 0.00 0.00 0.00 2.29
318 319 6.902224 TCGAATTGATGTACCTGTTGTATG 57.098 37.500 0.00 0.00 0.00 2.39
319 320 6.635755 TCGAATTGATGTACCTGTTGTATGA 58.364 36.000 0.00 0.00 0.00 2.15
320 321 6.756542 TCGAATTGATGTACCTGTTGTATGAG 59.243 38.462 0.00 0.00 0.00 2.90
321 322 6.535150 CGAATTGATGTACCTGTTGTATGAGT 59.465 38.462 0.00 0.00 0.00 3.41
322 323 7.064609 CGAATTGATGTACCTGTTGTATGAGTT 59.935 37.037 0.00 0.00 0.00 3.01
323 324 8.635765 AATTGATGTACCTGTTGTATGAGTTT 57.364 30.769 0.00 0.00 0.00 2.66
324 325 7.433708 TTGATGTACCTGTTGTATGAGTTTG 57.566 36.000 0.00 0.00 0.00 2.93
325 326 5.411361 TGATGTACCTGTTGTATGAGTTTGC 59.589 40.000 0.00 0.00 0.00 3.68
326 327 4.069304 TGTACCTGTTGTATGAGTTTGCC 58.931 43.478 0.00 0.00 0.00 4.52
327 328 3.222173 ACCTGTTGTATGAGTTTGCCA 57.778 42.857 0.00 0.00 0.00 4.92
328 329 3.561143 ACCTGTTGTATGAGTTTGCCAA 58.439 40.909 0.00 0.00 0.00 4.52
329 330 4.151883 ACCTGTTGTATGAGTTTGCCAAT 58.848 39.130 0.00 0.00 0.00 3.16
330 331 4.588528 ACCTGTTGTATGAGTTTGCCAATT 59.411 37.500 0.00 0.00 0.00 2.32
331 332 5.163513 CCTGTTGTATGAGTTTGCCAATTC 58.836 41.667 0.00 0.00 0.00 2.17
332 333 5.278907 CCTGTTGTATGAGTTTGCCAATTCA 60.279 40.000 0.00 0.00 33.51 2.57
333 334 6.154203 TGTTGTATGAGTTTGCCAATTCAA 57.846 33.333 0.00 0.00 32.78 2.69
334 335 6.215121 TGTTGTATGAGTTTGCCAATTCAAG 58.785 36.000 0.00 0.00 32.78 3.02
335 336 6.040278 TGTTGTATGAGTTTGCCAATTCAAGA 59.960 34.615 0.00 0.00 32.78 3.02
336 337 6.647334 TGTATGAGTTTGCCAATTCAAGAA 57.353 33.333 0.00 0.00 32.78 2.52
337 338 6.680810 TGTATGAGTTTGCCAATTCAAGAAG 58.319 36.000 0.00 0.00 32.78 2.85
338 339 6.489700 TGTATGAGTTTGCCAATTCAAGAAGA 59.510 34.615 0.00 0.00 32.78 2.87
339 340 5.850557 TGAGTTTGCCAATTCAAGAAGAA 57.149 34.783 0.00 0.00 41.28 2.52
340 341 6.219417 TGAGTTTGCCAATTCAAGAAGAAA 57.781 33.333 0.00 0.00 40.22 2.52
341 342 6.819284 TGAGTTTGCCAATTCAAGAAGAAAT 58.181 32.000 0.00 0.00 40.22 2.17
356 357 7.816513 TCAAGAAGAAATAGATGACTGTCACAG 59.183 37.037 13.50 2.22 37.52 3.66
398 399 6.951062 TCTTTTGTGTACAATGAATCCACA 57.049 33.333 0.00 0.00 35.55 4.17
414 415 2.295909 TCCACATTGCCAAAGTGTTAGC 59.704 45.455 11.41 0.00 0.00 3.09
417 418 3.058570 CACATTGCCAAAGTGTTAGCGTA 60.059 43.478 4.69 0.00 0.00 4.42
494 495 8.725148 AGATCAGTTTGTAGTTTGCTCATAAAG 58.275 33.333 0.00 0.00 0.00 1.85
499 500 8.903820 AGTTTGTAGTTTGCTCATAAAGACTTT 58.096 29.630 5.62 5.62 0.00 2.66
503 504 8.898761 TGTAGTTTGCTCATAAAGACTTTTTGA 58.101 29.630 16.91 16.91 0.00 2.69
555 562 4.474651 AGTTCCCTGATGTAACATCCATGA 59.525 41.667 0.00 0.00 0.00 3.07
579 586 3.717707 CCAGTCTTCTTGAAACGAGTCA 58.282 45.455 0.00 0.00 0.00 3.41
606 613 6.455360 TCTGGCCATGAATTACTTGATTTC 57.545 37.500 5.51 0.00 0.00 2.17
645 655 5.098211 GCATCTTTGCCTATCTTTTGTCAC 58.902 41.667 0.00 0.00 43.38 3.67
780 792 6.660521 TCTGGTCAATGAGCAAACTTATGATT 59.339 34.615 16.24 0.00 39.59 2.57
783 795 8.243426 TGGTCAATGAGCAAACTTATGATTAAC 58.757 33.333 13.15 0.00 37.11 2.01
848 860 6.693315 AGTTACTGCTAAGCAAAAGTCAAA 57.307 33.333 0.00 0.00 38.41 2.69
849 861 6.729187 AGTTACTGCTAAGCAAAAGTCAAAG 58.271 36.000 0.00 0.00 38.41 2.77
876 888 1.978580 AGACAAACCTCACACCCCTAG 59.021 52.381 0.00 0.00 0.00 3.02
1003 1015 3.807538 CACTGCGGCCACAGATGC 61.808 66.667 27.28 9.57 40.25 3.91
1029 1041 0.733150 GGTCCGCAATAAACAGAGCC 59.267 55.000 0.00 0.00 0.00 4.70
1031 1043 1.810151 GTCCGCAATAAACAGAGCCAA 59.190 47.619 0.00 0.00 0.00 4.52
1179 1191 4.411981 CTGCTCCTGCTGCTGGCT 62.412 66.667 19.55 0.00 42.39 4.75
1227 1239 0.401356 TGCTGCACAAGATGAGGGAA 59.599 50.000 0.00 0.00 0.00 3.97
1236 1248 3.682292 GATGAGGGAACGGCGCCTT 62.682 63.158 26.68 13.70 0.00 4.35
1284 1296 1.153208 GCAGCTCATGTCCCTCCAG 60.153 63.158 0.00 0.00 0.00 3.86
1342 1354 0.961019 TGCATCAGAACTGGTTTGCC 59.039 50.000 16.15 0.00 33.57 4.52
1364 1376 2.302445 ACTTCTCTGTGCTTGCATCTCT 59.698 45.455 0.00 0.00 0.00 3.10
1376 1388 2.781923 TGCATCTCTTTTGCACTGCTA 58.218 42.857 1.98 0.00 44.73 3.49
1436 1448 2.828520 CCTGAACTCTGGAGTGCTCTAA 59.171 50.000 9.79 0.00 41.58 2.10
1475 1487 7.400339 TGACCTGAGTTTAGTCCTCTTATTCAT 59.600 37.037 0.00 0.00 0.00 2.57
1477 1489 9.268282 ACCTGAGTTTAGTCCTCTTATTCATTA 57.732 33.333 0.00 0.00 0.00 1.90
1483 1495 9.651718 GTTTAGTCCTCTTATTCATTAAATGCG 57.348 33.333 0.00 0.00 0.00 4.73
1494 1520 0.913205 TTAAATGCGGCCCTAGGACA 59.087 50.000 11.48 3.14 0.00 4.02
1495 1521 0.179468 TAAATGCGGCCCTAGGACAC 59.821 55.000 11.48 0.00 0.00 3.67
1496 1522 1.847798 AAATGCGGCCCTAGGACACA 61.848 55.000 11.48 0.72 0.00 3.72
1497 1523 2.536997 AATGCGGCCCTAGGACACAC 62.537 60.000 11.48 0.00 0.00 3.82
1499 1525 3.031417 GCGGCCCTAGGACACACAT 62.031 63.158 11.48 0.00 0.00 3.21
1500 1526 1.682451 GCGGCCCTAGGACACACATA 61.682 60.000 11.48 0.00 0.00 2.29
1501 1527 0.104304 CGGCCCTAGGACACACATAC 59.896 60.000 11.48 0.00 0.00 2.39
1502 1528 0.468648 GGCCCTAGGACACACATACC 59.531 60.000 11.48 0.00 0.00 2.73
1503 1529 1.497161 GCCCTAGGACACACATACCT 58.503 55.000 11.48 0.00 37.76 3.08
1504 1530 1.139058 GCCCTAGGACACACATACCTG 59.861 57.143 11.48 0.00 35.52 4.00
1505 1531 1.139058 CCCTAGGACACACATACCTGC 59.861 57.143 11.48 0.00 35.52 4.85
1506 1532 1.139058 CCTAGGACACACATACCTGCC 59.861 57.143 1.05 0.00 35.52 4.85
1507 1533 1.831106 CTAGGACACACATACCTGCCA 59.169 52.381 0.00 0.00 35.52 4.92
1508 1534 0.324943 AGGACACACATACCTGCCAC 59.675 55.000 0.00 0.00 32.39 5.01
1509 1535 0.036164 GGACACACATACCTGCCACA 59.964 55.000 0.00 0.00 0.00 4.17
1510 1536 1.340017 GGACACACATACCTGCCACAT 60.340 52.381 0.00 0.00 0.00 3.21
1511 1537 2.009774 GACACACATACCTGCCACATC 58.990 52.381 0.00 0.00 0.00 3.06
1512 1538 1.009078 CACACATACCTGCCACATCG 58.991 55.000 0.00 0.00 0.00 3.84
1513 1539 0.901827 ACACATACCTGCCACATCGA 59.098 50.000 0.00 0.00 0.00 3.59
1514 1540 1.134699 ACACATACCTGCCACATCGAG 60.135 52.381 0.00 0.00 0.00 4.04
1515 1541 1.136891 CACATACCTGCCACATCGAGA 59.863 52.381 0.00 0.00 0.00 4.04
1516 1542 1.137086 ACATACCTGCCACATCGAGAC 59.863 52.381 0.00 0.00 0.00 3.36
1517 1543 1.136891 CATACCTGCCACATCGAGACA 59.863 52.381 0.00 0.00 0.00 3.41
1518 1544 1.485124 TACCTGCCACATCGAGACAT 58.515 50.000 0.00 0.00 0.00 3.06
1519 1545 1.485124 ACCTGCCACATCGAGACATA 58.515 50.000 0.00 0.00 0.00 2.29
1520 1546 1.831106 ACCTGCCACATCGAGACATAA 59.169 47.619 0.00 0.00 0.00 1.90
1521 1547 2.236146 ACCTGCCACATCGAGACATAAA 59.764 45.455 0.00 0.00 0.00 1.40
1522 1548 3.118261 ACCTGCCACATCGAGACATAAAT 60.118 43.478 0.00 0.00 0.00 1.40
1523 1549 3.496130 CCTGCCACATCGAGACATAAATC 59.504 47.826 0.00 0.00 0.00 2.17
1524 1550 3.466836 TGCCACATCGAGACATAAATCC 58.533 45.455 0.00 0.00 0.00 3.01
1525 1551 3.134623 TGCCACATCGAGACATAAATCCT 59.865 43.478 0.00 0.00 0.00 3.24
1526 1552 3.743396 GCCACATCGAGACATAAATCCTC 59.257 47.826 0.00 0.00 0.00 3.71
1527 1553 4.740634 GCCACATCGAGACATAAATCCTCA 60.741 45.833 0.00 0.00 0.00 3.86
1528 1554 4.987285 CCACATCGAGACATAAATCCTCAG 59.013 45.833 0.00 0.00 0.00 3.35
1546 1572 1.952296 CAGCCTCAGGTGCCAATATTC 59.048 52.381 0.00 0.00 34.14 1.75
1547 1573 1.565759 AGCCTCAGGTGCCAATATTCA 59.434 47.619 0.00 0.00 0.00 2.57
1562 1588 8.538701 TGCCAATATTCACAGTTCCAAATAATT 58.461 29.630 0.00 0.00 0.00 1.40
1594 1620 5.994250 TGGGCAGGCTATGAATATATTCTC 58.006 41.667 22.77 11.24 37.67 2.87
1597 1623 7.059156 GGGCAGGCTATGAATATATTCTCATT 58.941 38.462 22.77 10.21 37.67 2.57
1646 1672 2.842457 CAATCATGCAGGCTGTAGCTA 58.158 47.619 17.16 1.51 41.70 3.32
1713 1739 8.943002 AGATTACAAGTACCAAAAGTAATTCCG 58.057 33.333 0.00 0.00 37.14 4.30
1716 1742 4.296621 AGTACCAAAAGTAATTCCGGCT 57.703 40.909 0.00 0.00 31.05 5.52
1721 1747 3.089284 CAAAAGTAATTCCGGCTTCCCT 58.911 45.455 0.00 0.00 0.00 4.20
1742 1782 2.988010 TAGGGCATAGACTTGTGCAG 57.012 50.000 12.74 0.00 42.60 4.41
1750 1790 4.505922 GCATAGACTTGTGCAGATACTCAC 59.494 45.833 7.44 0.00 40.73 3.51
1754 1794 1.657594 CTTGTGCAGATACTCACAGCG 59.342 52.381 0.00 0.00 43.15 5.18
1756 1796 0.459237 GTGCAGATACTCACAGCGCT 60.459 55.000 2.64 2.64 33.63 5.92
1772 1812 4.561606 ACAGCGCTAATTAACAGAAGTACG 59.438 41.667 10.99 0.00 0.00 3.67
1815 1855 9.890629 ACTAATGCACTCACAAAAGATCTATAA 57.109 29.630 0.00 0.00 0.00 0.98
1823 1863 9.388506 ACTCACAAAAGATCTATAATCCAACAG 57.611 33.333 0.00 0.00 0.00 3.16
1824 1864 8.213518 TCACAAAAGATCTATAATCCAACAGC 57.786 34.615 0.00 0.00 0.00 4.40
1825 1865 7.828717 TCACAAAAGATCTATAATCCAACAGCA 59.171 33.333 0.00 0.00 0.00 4.41
1836 1876 7.822161 ATAATCCAACAGCAAGCATAATGTA 57.178 32.000 0.00 0.00 0.00 2.29
1859 1903 8.858094 TGTAAAATATGGAATCATGCATAGCAA 58.142 29.630 0.00 0.00 42.23 3.91
1860 1904 9.132521 GTAAAATATGGAATCATGCATAGCAAC 57.867 33.333 0.00 0.00 42.23 4.17
1865 1909 4.038282 TGGAATCATGCATAGCAACCAATC 59.962 41.667 0.00 0.00 43.62 2.67
1876 1920 6.478588 CATAGCAACCAATCTCGTAAAAGAC 58.521 40.000 0.00 0.00 0.00 3.01
1890 1934 6.942976 TCGTAAAAGACTTCCATTCCATACT 58.057 36.000 0.00 0.00 0.00 2.12
1895 1939 8.567285 AAAAGACTTCCATTCCATACTAACAG 57.433 34.615 0.00 0.00 0.00 3.16
1896 1940 5.675538 AGACTTCCATTCCATACTAACAGC 58.324 41.667 0.00 0.00 0.00 4.40
1897 1941 5.426833 AGACTTCCATTCCATACTAACAGCT 59.573 40.000 0.00 0.00 0.00 4.24
1898 1942 6.067217 ACTTCCATTCCATACTAACAGCTT 57.933 37.500 0.00 0.00 0.00 3.74
1899 1943 6.485171 ACTTCCATTCCATACTAACAGCTTT 58.515 36.000 0.00 0.00 0.00 3.51
1900 1944 6.948309 ACTTCCATTCCATACTAACAGCTTTT 59.052 34.615 0.00 0.00 0.00 2.27
1901 1945 6.757897 TCCATTCCATACTAACAGCTTTTG 57.242 37.500 0.00 0.00 0.00 2.44
1902 1946 6.245408 TCCATTCCATACTAACAGCTTTTGT 58.755 36.000 0.00 0.00 43.45 2.83
1903 1947 6.150976 TCCATTCCATACTAACAGCTTTTGTG 59.849 38.462 0.00 0.00 40.74 3.33
1904 1948 5.371115 TTCCATACTAACAGCTTTTGTGC 57.629 39.130 0.00 0.00 40.74 4.57
1905 1949 4.393834 TCCATACTAACAGCTTTTGTGCA 58.606 39.130 0.00 0.00 40.74 4.57
1907 1951 4.455533 CCATACTAACAGCTTTTGTGCAGA 59.544 41.667 0.00 0.00 40.74 4.26
1908 1952 5.391310 CCATACTAACAGCTTTTGTGCAGAG 60.391 44.000 0.00 0.00 40.74 3.35
1909 1953 3.808728 ACTAACAGCTTTTGTGCAGAGA 58.191 40.909 0.00 0.00 40.74 3.10
1911 1955 2.627515 ACAGCTTTTGTGCAGAGAGA 57.372 45.000 0.00 0.00 38.99 3.10
1913 1957 3.484407 ACAGCTTTTGTGCAGAGAGAAT 58.516 40.909 0.00 0.00 38.99 2.40
1914 1958 3.501445 ACAGCTTTTGTGCAGAGAGAATC 59.499 43.478 0.00 0.00 38.99 2.52
1915 1959 3.501062 CAGCTTTTGTGCAGAGAGAATCA 59.499 43.478 0.00 0.00 34.05 2.57
1916 1960 4.156190 CAGCTTTTGTGCAGAGAGAATCAT 59.844 41.667 0.00 0.00 34.05 2.45
1917 1961 5.353400 CAGCTTTTGTGCAGAGAGAATCATA 59.647 40.000 0.00 0.00 34.05 2.15
1918 1962 5.942236 AGCTTTTGTGCAGAGAGAATCATAA 59.058 36.000 0.00 0.00 34.05 1.90
1921 1965 7.220300 GCTTTTGTGCAGAGAGAATCATAAATG 59.780 37.037 0.00 0.00 37.82 2.32
1923 1967 7.692460 TTGTGCAGAGAGAATCATAAATGTT 57.308 32.000 0.00 0.00 37.82 2.71
1924 1968 8.791327 TTGTGCAGAGAGAATCATAAATGTTA 57.209 30.769 0.00 0.00 37.82 2.41
1925 1969 8.201554 TGTGCAGAGAGAATCATAAATGTTAC 57.798 34.615 0.00 0.00 37.82 2.50
1927 1971 8.834465 GTGCAGAGAGAATCATAAATGTTACAT 58.166 33.333 0.00 0.00 37.82 2.29
1928 1972 9.049523 TGCAGAGAGAATCATAAATGTTACATC 57.950 33.333 0.00 0.00 37.82 3.06
1929 1973 8.219769 GCAGAGAGAATCATAAATGTTACATCG 58.780 37.037 0.00 0.00 37.82 3.84
1930 1974 8.706936 CAGAGAGAATCATAAATGTTACATCGG 58.293 37.037 0.00 0.00 37.82 4.18
1950 2010 9.453572 ACATCGGCATATAATATTCAACTGAAT 57.546 29.630 9.74 9.74 45.77 2.57
1991 2056 7.024345 AGGATGGCTATGACAATGATATTCA 57.976 36.000 0.00 0.00 0.00 2.57
1992 2057 7.640313 AGGATGGCTATGACAATGATATTCAT 58.360 34.615 0.00 0.00 39.09 2.57
1994 2059 8.746530 GGATGGCTATGACAATGATATTCATTT 58.253 33.333 0.07 0.00 44.03 2.32
1995 2060 9.569167 GATGGCTATGACAATGATATTCATTTG 57.431 33.333 0.07 0.63 44.03 2.32
1996 2061 8.467963 TGGCTATGACAATGATATTCATTTGT 57.532 30.769 0.07 3.37 44.03 2.83
1997 2062 8.354426 TGGCTATGACAATGATATTCATTTGTG 58.646 33.333 0.07 0.00 44.03 3.33
1998 2063 7.811236 GGCTATGACAATGATATTCATTTGTGG 59.189 37.037 0.07 0.00 44.03 4.17
1999 2064 8.570488 GCTATGACAATGATATTCATTTGTGGA 58.430 33.333 0.07 0.00 44.03 4.02
2012 2077 8.931385 ATTCATTTGTGGATTATAAACACTGC 57.069 30.769 18.63 0.00 36.16 4.40
2013 2078 6.550843 TCATTTGTGGATTATAAACACTGCG 58.449 36.000 18.63 9.24 36.16 5.18
2014 2079 6.372937 TCATTTGTGGATTATAAACACTGCGA 59.627 34.615 18.63 10.69 36.16 5.10
2015 2080 5.539582 TTGTGGATTATAAACACTGCGAC 57.460 39.130 18.63 2.88 36.16 5.19
2016 2081 4.570930 TGTGGATTATAAACACTGCGACA 58.429 39.130 18.63 4.78 36.16 4.35
2017 2082 4.629634 TGTGGATTATAAACACTGCGACAG 59.370 41.667 18.63 5.47 36.16 3.51
2034 2099 2.989840 GACAGTTGTAGCACTAGCACAG 59.010 50.000 0.00 0.00 45.49 3.66
2035 2100 2.628178 ACAGTTGTAGCACTAGCACAGA 59.372 45.455 0.00 0.00 45.49 3.41
2042 2108 1.204467 AGCACTAGCACAGAAGAGCTC 59.796 52.381 5.27 5.27 45.49 4.09
2046 2112 3.431572 CACTAGCACAGAAGAGCTCAAAC 59.568 47.826 17.77 6.60 40.95 2.93
2052 2118 5.420421 AGCACAGAAGAGCTCAAACTATCTA 59.580 40.000 17.77 0.00 37.03 1.98
2066 2132 9.646427 CTCAAACTATCTACCTATTCCATTAGC 57.354 37.037 0.00 0.00 0.00 3.09
2067 2133 9.154632 TCAAACTATCTACCTATTCCATTAGCA 57.845 33.333 0.00 0.00 0.00 3.49
2072 2138 7.739995 ATCTACCTATTCCATTAGCATGCTA 57.260 36.000 23.52 23.52 0.00 3.49
2076 2244 9.539825 CTACCTATTCCATTAGCATGCTAATAG 57.460 37.037 39.24 34.17 44.61 1.73
2082 2250 9.971922 ATTCCATTAGCATGCTAATAGTTTTTC 57.028 29.630 39.24 1.55 44.61 2.29
2083 2251 7.639039 TCCATTAGCATGCTAATAGTTTTTCG 58.361 34.615 39.24 27.54 44.61 3.46
2085 2253 6.995511 TTAGCATGCTAATAGTTTTTCGGT 57.004 33.333 31.53 3.20 34.02 4.69
2087 2255 5.880341 AGCATGCTAATAGTTTTTCGGTTC 58.120 37.500 21.21 0.00 0.00 3.62
2094 2262 7.174253 TGCTAATAGTTTTTCGGTTCTGTTCAT 59.826 33.333 0.00 0.00 0.00 2.57
2099 2267 7.090953 AGTTTTTCGGTTCTGTTCATAAACA 57.909 32.000 0.00 0.00 43.06 2.83
2102 2270 6.869315 TTTCGGTTCTGTTCATAAACATGA 57.131 33.333 0.00 0.00 44.18 3.07
2108 2276 7.007367 CGGTTCTGTTCATAAACATGATTTTCG 59.993 37.037 0.00 0.00 44.18 3.46
2113 2281 8.948853 TGTTCATAAACATGATTTTCGAAGTC 57.051 30.769 0.00 1.79 40.45 3.01
2116 2284 8.948853 TCATAAACATGATTTTCGAAGTCAAC 57.051 30.769 16.13 2.37 0.00 3.18
2117 2285 8.563732 TCATAAACATGATTTTCGAAGTCAACA 58.436 29.630 16.13 7.08 0.00 3.33
2162 2330 5.786311 TCTTTTTCATTTGGCCAGAATGAG 58.214 37.500 27.31 20.80 42.54 2.90
2510 2678 0.107456 CTTCTGACACTGTGGCACCT 59.893 55.000 13.36 0.00 28.59 4.00
2530 2698 3.597255 CTGAGAATTCTGCAAGCTCTGA 58.403 45.455 14.00 0.00 0.00 3.27
2551 2719 3.838244 TGATACCATACCTGCTCCAAC 57.162 47.619 0.00 0.00 0.00 3.77
2552 2720 3.111484 TGATACCATACCTGCTCCAACA 58.889 45.455 0.00 0.00 0.00 3.33
2553 2721 3.521531 TGATACCATACCTGCTCCAACAA 59.478 43.478 0.00 0.00 0.00 2.83
2554 2722 2.200373 ACCATACCTGCTCCAACAAC 57.800 50.000 0.00 0.00 0.00 3.32
2555 2723 1.271926 ACCATACCTGCTCCAACAACC 60.272 52.381 0.00 0.00 0.00 3.77
2556 2724 1.271871 CCATACCTGCTCCAACAACCA 60.272 52.381 0.00 0.00 0.00 3.67
2557 2725 2.621407 CCATACCTGCTCCAACAACCAT 60.621 50.000 0.00 0.00 0.00 3.55
2558 2726 3.371487 CCATACCTGCTCCAACAACCATA 60.371 47.826 0.00 0.00 0.00 2.74
2559 2727 2.200373 ACCTGCTCCAACAACCATAC 57.800 50.000 0.00 0.00 0.00 2.39
2560 2728 1.271926 ACCTGCTCCAACAACCATACC 60.272 52.381 0.00 0.00 0.00 2.73
2561 2729 1.004745 CCTGCTCCAACAACCATACCT 59.995 52.381 0.00 0.00 0.00 3.08
2562 2730 2.086869 CTGCTCCAACAACCATACCTG 58.913 52.381 0.00 0.00 0.00 4.00
2563 2731 0.811281 GCTCCAACAACCATACCTGC 59.189 55.000 0.00 0.00 0.00 4.85
2564 2732 1.614317 GCTCCAACAACCATACCTGCT 60.614 52.381 0.00 0.00 0.00 4.24
2565 2733 2.359900 CTCCAACAACCATACCTGCTC 58.640 52.381 0.00 0.00 0.00 4.26
2566 2734 1.004277 TCCAACAACCATACCTGCTCC 59.996 52.381 0.00 0.00 0.00 4.70
2567 2735 1.271871 CCAACAACCATACCTGCTCCA 60.272 52.381 0.00 0.00 0.00 3.86
2568 2736 2.513753 CAACAACCATACCTGCTCCAA 58.486 47.619 0.00 0.00 0.00 3.53
2590 2761 8.206867 TCCAACAGAAGATCATTCCTATAACAG 58.793 37.037 0.00 0.00 0.00 3.16
2764 2935 1.028868 GCATCAGAGAGCAACCACCC 61.029 60.000 0.00 0.00 0.00 4.61
2827 2998 3.601443 AACTCCTGACACTGTCATAGC 57.399 47.619 12.34 0.00 41.94 2.97
2856 3027 0.535102 AGCAAACTCCAGTGGTTCCG 60.535 55.000 9.54 0.00 0.00 4.30
3014 3185 3.438087 CAGACGATGCCAATCAAAGTTCT 59.562 43.478 0.00 0.00 32.61 3.01
3137 3308 2.266055 GAGGACACCCAAGGCGAG 59.734 66.667 0.00 0.00 33.88 5.03
3218 3389 5.105146 TGCTAGAGAACCAGAGAAGGAAATC 60.105 44.000 0.00 0.00 0.00 2.17
3290 3461 5.948992 AAGAAGAACTCGATGGGAAAAAG 57.051 39.130 0.00 0.00 0.00 2.27
3626 3797 5.189180 ACTGAAGCCAACCAAGAGATAATC 58.811 41.667 0.00 0.00 0.00 1.75
3701 3872 7.039784 TCCACAAATAACAGGGAATCAAAAGAG 60.040 37.037 0.00 0.00 0.00 2.85
3737 3908 3.774842 AGGAAGAGGAAGTCCAGATCT 57.225 47.619 0.00 0.00 38.89 2.75
3874 4045 5.948758 TGCAATACAATGATGGAAGGTACAA 59.051 36.000 0.00 0.00 0.00 2.41
3958 4129 5.946942 ATAGCTCTGAAGAGAACAATGGA 57.053 39.130 11.56 0.00 44.74 3.41
4061 4232 7.250569 TGAATACTGAAAATTGATTCTTCGGC 58.749 34.615 0.00 0.00 0.00 5.54
4081 4253 3.181468 GGCGAACCTAGTAGTAAGCCATT 60.181 47.826 14.45 0.00 40.27 3.16
4242 4414 3.058570 TGTTTGCCAAGCATACAAGTACG 60.059 43.478 9.88 0.00 44.57 3.67
4243 4415 1.732941 TGCCAAGCATACAAGTACGG 58.267 50.000 0.00 0.00 31.71 4.02
4617 4790 5.739959 TGCAAGTTATGAAGCCATGTACTA 58.260 37.500 0.00 0.00 32.40 1.82
4772 4945 3.452990 TCTGAGGGTGTAACTTGTGAACA 59.547 43.478 0.00 0.00 36.74 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.681729 AGGAATTCCTTGTGTCAGTTACTA 57.318 37.500 21.89 0.00 46.09 1.82
15 16 5.568620 AGGAATTCCTTGTGTCAGTTACT 57.431 39.130 21.89 0.00 46.09 2.24
131 132 3.488721 GCTAATCAATCAGTGCAAGCCTG 60.489 47.826 0.00 0.00 0.00 4.85
132 133 2.686915 GCTAATCAATCAGTGCAAGCCT 59.313 45.455 0.00 0.00 0.00 4.58
133 134 2.424601 TGCTAATCAATCAGTGCAAGCC 59.575 45.455 0.00 0.00 0.00 4.35
134 135 3.376234 TCTGCTAATCAATCAGTGCAAGC 59.624 43.478 0.00 0.00 0.00 4.01
135 136 4.634883 ACTCTGCTAATCAATCAGTGCAAG 59.365 41.667 0.00 0.00 0.00 4.01
136 137 4.582869 ACTCTGCTAATCAATCAGTGCAA 58.417 39.130 0.00 0.00 0.00 4.08
137 138 4.212143 ACTCTGCTAATCAATCAGTGCA 57.788 40.909 0.00 0.00 0.00 4.57
138 139 5.814705 AGTTACTCTGCTAATCAATCAGTGC 59.185 40.000 0.00 0.00 0.00 4.40
139 140 7.547019 TGAAGTTACTCTGCTAATCAATCAGTG 59.453 37.037 0.00 0.00 0.00 3.66
140 141 7.615403 TGAAGTTACTCTGCTAATCAATCAGT 58.385 34.615 0.00 0.00 0.00 3.41
168 169 5.878406 AAGAAGTATGGGTGATACTCTGG 57.122 43.478 0.00 0.00 45.67 3.86
193 194 1.614996 TGATGCTCTTCCCGCAAAAA 58.385 45.000 0.00 0.00 41.26 1.94
194 195 1.745087 GATGATGCTCTTCCCGCAAAA 59.255 47.619 0.00 0.00 41.26 2.44
195 196 1.382522 GATGATGCTCTTCCCGCAAA 58.617 50.000 0.00 0.00 41.26 3.68
196 197 0.464373 GGATGATGCTCTTCCCGCAA 60.464 55.000 6.76 0.00 41.26 4.85
197 198 1.146930 GGATGATGCTCTTCCCGCA 59.853 57.895 6.76 0.00 42.25 5.69
198 199 0.250640 ATGGATGATGCTCTTCCCGC 60.251 55.000 12.44 0.00 39.28 6.13
199 200 2.301296 AGTATGGATGATGCTCTTCCCG 59.699 50.000 12.44 0.00 39.28 5.14
200 201 3.672808 CAGTATGGATGATGCTCTTCCC 58.327 50.000 12.44 0.00 39.28 3.97
236 237 2.565391 TCCTAATGAACTGGCAAGTCGA 59.435 45.455 0.00 0.00 34.77 4.20
252 253 5.962433 GTGCAGTTCACACTAGTATCCTAA 58.038 41.667 0.00 0.00 44.98 2.69
253 254 5.578005 GTGCAGTTCACACTAGTATCCTA 57.422 43.478 0.00 0.00 44.98 2.94
265 266 8.905702 CATTTCTAACTAATTTGTGCAGTTCAC 58.094 33.333 0.00 0.00 45.82 3.18
266 267 7.594758 GCATTTCTAACTAATTTGTGCAGTTCA 59.405 33.333 0.00 0.00 34.48 3.18
267 268 7.809806 AGCATTTCTAACTAATTTGTGCAGTTC 59.190 33.333 0.00 0.00 34.48 3.01
268 269 7.661040 AGCATTTCTAACTAATTTGTGCAGTT 58.339 30.769 0.00 0.00 36.51 3.16
270 271 8.524870 AAAGCATTTCTAACTAATTTGTGCAG 57.475 30.769 0.00 0.00 27.08 4.41
287 288 6.071952 ACAGGTACATCAATTCGAAAGCATTT 60.072 34.615 0.00 0.00 43.98 2.32
288 289 5.415701 ACAGGTACATCAATTCGAAAGCATT 59.584 36.000 0.00 0.00 0.00 3.56
289 290 4.943705 ACAGGTACATCAATTCGAAAGCAT 59.056 37.500 0.00 0.00 0.00 3.79
290 291 4.323417 ACAGGTACATCAATTCGAAAGCA 58.677 39.130 0.00 0.00 0.00 3.91
291 292 4.946784 ACAGGTACATCAATTCGAAAGC 57.053 40.909 0.00 0.00 0.00 3.51
292 293 6.241207 ACAACAGGTACATCAATTCGAAAG 57.759 37.500 0.00 0.00 0.00 2.62
293 294 7.604545 TCATACAACAGGTACATCAATTCGAAA 59.395 33.333 0.00 0.00 34.07 3.46
294 295 7.100409 TCATACAACAGGTACATCAATTCGAA 58.900 34.615 0.00 0.00 34.07 3.71
295 296 6.635755 TCATACAACAGGTACATCAATTCGA 58.364 36.000 0.00 0.00 34.07 3.71
296 297 6.535150 ACTCATACAACAGGTACATCAATTCG 59.465 38.462 0.00 0.00 34.07 3.34
297 298 7.849804 ACTCATACAACAGGTACATCAATTC 57.150 36.000 0.00 0.00 34.07 2.17
298 299 8.514594 CAAACTCATACAACAGGTACATCAATT 58.485 33.333 0.00 0.00 34.07 2.32
299 300 7.362056 GCAAACTCATACAACAGGTACATCAAT 60.362 37.037 0.00 0.00 34.07 2.57
300 301 6.072728 GCAAACTCATACAACAGGTACATCAA 60.073 38.462 0.00 0.00 34.07 2.57
301 302 5.411361 GCAAACTCATACAACAGGTACATCA 59.589 40.000 0.00 0.00 34.07 3.07
302 303 5.163754 GGCAAACTCATACAACAGGTACATC 60.164 44.000 0.00 0.00 34.07 3.06
303 304 4.700213 GGCAAACTCATACAACAGGTACAT 59.300 41.667 0.00 0.00 34.07 2.29
304 305 4.069304 GGCAAACTCATACAACAGGTACA 58.931 43.478 0.00 0.00 34.07 2.90
305 306 4.069304 TGGCAAACTCATACAACAGGTAC 58.931 43.478 0.00 0.00 34.07 3.34
306 307 4.359434 TGGCAAACTCATACAACAGGTA 57.641 40.909 0.00 0.00 36.16 3.08
307 308 3.222173 TGGCAAACTCATACAACAGGT 57.778 42.857 0.00 0.00 0.00 4.00
308 309 4.789012 ATTGGCAAACTCATACAACAGG 57.211 40.909 3.01 0.00 0.00 4.00
309 310 5.771469 TGAATTGGCAAACTCATACAACAG 58.229 37.500 3.01 0.00 0.00 3.16
310 311 5.781210 TGAATTGGCAAACTCATACAACA 57.219 34.783 3.01 0.00 0.00 3.33
311 312 6.446318 TCTTGAATTGGCAAACTCATACAAC 58.554 36.000 3.01 0.00 0.00 3.32
312 313 6.647334 TCTTGAATTGGCAAACTCATACAA 57.353 33.333 3.01 3.00 0.00 2.41
313 314 6.489700 TCTTCTTGAATTGGCAAACTCATACA 59.510 34.615 3.01 0.00 0.00 2.29
314 315 6.913170 TCTTCTTGAATTGGCAAACTCATAC 58.087 36.000 3.01 0.00 0.00 2.39
315 316 7.523293 TTCTTCTTGAATTGGCAAACTCATA 57.477 32.000 3.01 0.00 0.00 2.15
316 317 6.409524 TTCTTCTTGAATTGGCAAACTCAT 57.590 33.333 3.01 0.00 0.00 2.90
317 318 5.850557 TTCTTCTTGAATTGGCAAACTCA 57.149 34.783 3.01 7.67 0.00 3.41
318 319 8.299570 TCTATTTCTTCTTGAATTGGCAAACTC 58.700 33.333 3.01 4.82 34.24 3.01
319 320 8.181904 TCTATTTCTTCTTGAATTGGCAAACT 57.818 30.769 3.01 0.00 34.24 2.66
320 321 8.866956 CATCTATTTCTTCTTGAATTGGCAAAC 58.133 33.333 3.01 2.21 34.24 2.93
321 322 8.805175 TCATCTATTTCTTCTTGAATTGGCAAA 58.195 29.630 3.01 0.00 34.24 3.68
322 323 8.246180 GTCATCTATTTCTTCTTGAATTGGCAA 58.754 33.333 0.68 0.68 34.24 4.52
323 324 7.613022 AGTCATCTATTTCTTCTTGAATTGGCA 59.387 33.333 0.00 0.00 34.24 4.92
324 325 7.914346 CAGTCATCTATTTCTTCTTGAATTGGC 59.086 37.037 0.00 0.00 34.24 4.52
325 326 8.954350 ACAGTCATCTATTTCTTCTTGAATTGG 58.046 33.333 0.00 0.00 34.24 3.16
326 327 9.985318 GACAGTCATCTATTTCTTCTTGAATTG 57.015 33.333 0.00 0.00 34.24 2.32
327 328 9.730705 TGACAGTCATCTATTTCTTCTTGAATT 57.269 29.630 0.00 0.00 34.24 2.17
328 329 9.160496 GTGACAGTCATCTATTTCTTCTTGAAT 57.840 33.333 6.51 0.00 34.24 2.57
329 330 8.150296 TGTGACAGTCATCTATTTCTTCTTGAA 58.850 33.333 6.51 0.00 0.00 2.69
330 331 7.670364 TGTGACAGTCATCTATTTCTTCTTGA 58.330 34.615 6.51 0.00 0.00 3.02
331 332 7.412781 GCTGTGACAGTCATCTATTTCTTCTTG 60.413 40.741 14.82 0.00 33.43 3.02
332 333 6.593382 GCTGTGACAGTCATCTATTTCTTCTT 59.407 38.462 14.82 0.00 33.43 2.52
333 334 6.105333 GCTGTGACAGTCATCTATTTCTTCT 58.895 40.000 14.82 0.00 33.43 2.85
334 335 5.871524 TGCTGTGACAGTCATCTATTTCTTC 59.128 40.000 14.82 0.00 33.43 2.87
335 336 5.641209 GTGCTGTGACAGTCATCTATTTCTT 59.359 40.000 14.82 0.00 33.43 2.52
336 337 5.046735 AGTGCTGTGACAGTCATCTATTTCT 60.047 40.000 14.82 2.18 33.43 2.52
337 338 5.174395 AGTGCTGTGACAGTCATCTATTTC 58.826 41.667 14.82 0.04 33.43 2.17
338 339 5.157940 AGTGCTGTGACAGTCATCTATTT 57.842 39.130 14.82 0.00 33.43 1.40
339 340 4.815533 AGTGCTGTGACAGTCATCTATT 57.184 40.909 14.82 0.00 33.43 1.73
340 341 4.221482 TGAAGTGCTGTGACAGTCATCTAT 59.779 41.667 14.82 1.60 33.43 1.98
341 342 3.573967 TGAAGTGCTGTGACAGTCATCTA 59.426 43.478 14.82 0.00 33.43 1.98
356 357 2.833943 AGAATCCCCCAAAATGAAGTGC 59.166 45.455 0.00 0.00 0.00 4.40
398 399 5.183140 AGAATTACGCTAACACTTTGGCAAT 59.817 36.000 0.00 0.00 39.12 3.56
447 448 8.855110 TGATCTGAACTATTTTTAAGTGGCAAA 58.145 29.630 0.00 0.00 0.00 3.68
448 449 8.402798 TGATCTGAACTATTTTTAAGTGGCAA 57.597 30.769 0.00 0.00 0.00 4.52
449 450 7.665559 ACTGATCTGAACTATTTTTAAGTGGCA 59.334 33.333 6.60 0.00 0.00 4.92
450 451 8.045176 ACTGATCTGAACTATTTTTAAGTGGC 57.955 34.615 6.60 0.00 0.00 5.01
466 467 5.610398 TGAGCAAACTACAAACTGATCTGA 58.390 37.500 6.60 0.00 0.00 3.27
532 533 4.474651 TCATGGATGTTACATCAGGGAACT 59.525 41.667 24.30 0.85 46.44 3.01
533 534 4.780815 TCATGGATGTTACATCAGGGAAC 58.219 43.478 24.30 8.53 0.00 3.62
535 536 4.686944 GCTTCATGGATGTTACATCAGGGA 60.687 45.833 24.30 15.33 0.00 4.20
536 537 3.567164 GCTTCATGGATGTTACATCAGGG 59.433 47.826 24.30 13.52 0.00 4.45
537 538 3.567164 GGCTTCATGGATGTTACATCAGG 59.433 47.826 24.30 13.83 0.00 3.86
538 539 4.201657 TGGCTTCATGGATGTTACATCAG 58.798 43.478 24.30 14.53 0.00 2.90
540 541 4.202441 ACTGGCTTCATGGATGTTACATC 58.798 43.478 16.30 16.30 0.00 3.06
541 542 4.080129 AGACTGGCTTCATGGATGTTACAT 60.080 41.667 0.00 0.00 0.00 2.29
544 545 4.574674 AAGACTGGCTTCATGGATGTTA 57.425 40.909 0.00 0.00 28.17 2.41
545 546 3.446442 AAGACTGGCTTCATGGATGTT 57.554 42.857 0.00 0.00 28.17 2.71
555 562 3.134458 CTCGTTTCAAGAAGACTGGCTT 58.866 45.455 0.00 0.00 40.25 4.35
570 577 2.582052 TGGCCAGAAATTGACTCGTTT 58.418 42.857 0.00 0.00 0.00 3.60
579 586 6.855763 TCAAGTAATTCATGGCCAGAAATT 57.144 33.333 23.90 23.90 0.00 1.82
606 613 4.162040 AGATGCTTATCTTTGACCAGGG 57.838 45.455 0.00 0.00 0.00 4.45
645 655 6.876257 AGAGAAAGCTGTGAAACTAACCATAG 59.124 38.462 0.00 0.00 38.04 2.23
713 723 1.879380 GCACCATGTTTACACTCTGCA 59.121 47.619 0.00 0.00 0.00 4.41
780 792 9.236006 TCTGATCTCATGATGAAGATATCGTTA 57.764 33.333 0.00 0.00 32.19 3.18
783 795 7.168469 GCATCTGATCTCATGATGAAGATATCG 59.832 40.741 16.80 0.00 39.72 2.92
848 860 3.572255 GTGTGAGGTTTGTCTCTCTCTCT 59.428 47.826 0.00 0.00 34.98 3.10
849 861 3.305744 GGTGTGAGGTTTGTCTCTCTCTC 60.306 52.174 0.00 0.00 34.98 3.20
876 888 1.001641 AAGGTGAGGCACATGCTCC 60.002 57.895 3.48 0.00 41.70 4.70
1041 1053 0.833287 TCACTAGCATCCTTCCAGGC 59.167 55.000 0.00 0.00 34.61 4.85
1047 1059 2.114616 CACCCTCTCACTAGCATCCTT 58.885 52.381 0.00 0.00 0.00 3.36
1236 1248 1.610327 CTGGAGGAGGACGGAGAGA 59.390 63.158 0.00 0.00 0.00 3.10
1284 1296 2.728817 CATACCTCGAGGCGGACC 59.271 66.667 31.56 0.00 39.32 4.46
1342 1354 2.415857 GAGATGCAAGCACAGAGAAGTG 59.584 50.000 0.00 0.00 42.37 3.16
1364 1376 3.762407 TCTACTGGTAGCAGTGCAAAA 57.238 42.857 32.44 14.81 36.68 2.44
1376 1388 2.357154 GGGGCAATCACAATCTACTGGT 60.357 50.000 0.00 0.00 0.00 4.00
1387 1399 0.318120 CACCAAAGTGGGGCAATCAC 59.682 55.000 0.00 0.00 43.37 3.06
1436 1448 4.033709 ACTCAGGTCACTGGTTATATGCT 58.966 43.478 0.00 0.00 44.99 3.79
1439 1451 7.147707 GGACTAAACTCAGGTCACTGGTTATAT 60.148 40.741 0.00 0.00 44.99 0.86
1441 1453 5.046520 GGACTAAACTCAGGTCACTGGTTAT 60.047 44.000 0.00 0.00 44.99 1.89
1450 1462 7.171630 TGAATAAGAGGACTAAACTCAGGTC 57.828 40.000 0.00 0.00 37.43 3.85
1475 1487 0.913205 TGTCCTAGGGCCGCATTTAA 59.087 50.000 11.80 0.00 0.00 1.52
1477 1489 1.077716 GTGTCCTAGGGCCGCATTT 60.078 57.895 11.80 0.00 0.00 2.32
1482 1494 0.104304 GTATGTGTGTCCTAGGGCCG 59.896 60.000 11.80 0.00 0.00 6.13
1483 1495 0.468648 GGTATGTGTGTCCTAGGGCC 59.531 60.000 11.80 2.68 0.00 5.80
1494 1520 0.901827 TCGATGTGGCAGGTATGTGT 59.098 50.000 0.00 0.00 0.00 3.72
1495 1521 1.136891 TCTCGATGTGGCAGGTATGTG 59.863 52.381 0.00 0.00 0.00 3.21
1496 1522 1.137086 GTCTCGATGTGGCAGGTATGT 59.863 52.381 0.00 0.00 0.00 2.29
1497 1523 1.136891 TGTCTCGATGTGGCAGGTATG 59.863 52.381 0.00 0.00 0.00 2.39
1499 1525 1.485124 ATGTCTCGATGTGGCAGGTA 58.515 50.000 0.00 0.00 0.00 3.08
1500 1526 1.485124 TATGTCTCGATGTGGCAGGT 58.515 50.000 0.00 0.00 0.00 4.00
1501 1527 2.602257 TTATGTCTCGATGTGGCAGG 57.398 50.000 0.00 0.00 0.00 4.85
1502 1528 3.496130 GGATTTATGTCTCGATGTGGCAG 59.504 47.826 0.00 0.00 0.00 4.85
1503 1529 3.134623 AGGATTTATGTCTCGATGTGGCA 59.865 43.478 0.00 0.00 0.00 4.92
1504 1530 3.733337 AGGATTTATGTCTCGATGTGGC 58.267 45.455 0.00 0.00 0.00 5.01
1505 1531 4.948847 TGAGGATTTATGTCTCGATGTGG 58.051 43.478 0.00 0.00 0.00 4.17
1506 1532 4.447054 GCTGAGGATTTATGTCTCGATGTG 59.553 45.833 0.00 0.00 0.00 3.21
1507 1533 4.502259 GGCTGAGGATTTATGTCTCGATGT 60.502 45.833 0.00 0.00 0.00 3.06
1508 1534 3.993081 GGCTGAGGATTTATGTCTCGATG 59.007 47.826 0.00 0.00 0.00 3.84
1509 1535 3.900601 AGGCTGAGGATTTATGTCTCGAT 59.099 43.478 0.00 0.00 0.00 3.59
1510 1536 3.300388 AGGCTGAGGATTTATGTCTCGA 58.700 45.455 0.00 0.00 0.00 4.04
1511 1537 3.068732 TGAGGCTGAGGATTTATGTCTCG 59.931 47.826 0.00 0.00 32.67 4.04
1512 1538 4.502950 CCTGAGGCTGAGGATTTATGTCTC 60.503 50.000 15.68 0.00 31.48 3.36
1513 1539 3.390639 CCTGAGGCTGAGGATTTATGTCT 59.609 47.826 15.68 0.00 31.48 3.41
1514 1540 3.135530 ACCTGAGGCTGAGGATTTATGTC 59.864 47.826 27.47 0.00 34.37 3.06
1515 1541 3.118112 CACCTGAGGCTGAGGATTTATGT 60.118 47.826 27.47 0.00 34.37 2.29
1516 1542 3.474600 CACCTGAGGCTGAGGATTTATG 58.525 50.000 27.47 10.07 34.37 1.90
1517 1543 2.158696 GCACCTGAGGCTGAGGATTTAT 60.159 50.000 27.47 0.00 34.37 1.40
1518 1544 1.210478 GCACCTGAGGCTGAGGATTTA 59.790 52.381 27.47 0.00 34.37 1.40
1519 1545 0.034670 GCACCTGAGGCTGAGGATTT 60.035 55.000 27.47 0.67 34.37 2.17
1520 1546 1.606531 GCACCTGAGGCTGAGGATT 59.393 57.895 27.47 1.52 34.37 3.01
1521 1547 2.373707 GGCACCTGAGGCTGAGGAT 61.374 63.158 27.47 8.13 34.37 3.24
1522 1548 3.005539 GGCACCTGAGGCTGAGGA 61.006 66.667 27.47 0.00 34.37 3.71
1523 1549 2.207501 ATTGGCACCTGAGGCTGAGG 62.208 60.000 19.16 19.16 36.57 3.86
1524 1550 0.543277 TATTGGCACCTGAGGCTGAG 59.457 55.000 0.00 0.00 34.73 3.35
1525 1551 1.216064 ATATTGGCACCTGAGGCTGA 58.784 50.000 0.00 0.00 34.73 4.26
1526 1552 1.952296 GAATATTGGCACCTGAGGCTG 59.048 52.381 0.00 0.00 34.73 4.85
1527 1553 1.565759 TGAATATTGGCACCTGAGGCT 59.434 47.619 0.00 0.00 34.73 4.58
1528 1554 1.678101 GTGAATATTGGCACCTGAGGC 59.322 52.381 0.00 0.00 0.00 4.70
1547 1573 9.367160 CCAGGGATATTAATTATTTGGAACTGT 57.633 33.333 0.00 0.00 0.00 3.55
1568 1594 5.921654 GAATATATTCATAGCCTGCCCAGGG 60.922 48.000 18.67 0.00 41.34 4.45
1721 1747 4.223144 TCTGCACAAGTCTATGCCCTATA 58.777 43.478 6.56 0.00 41.33 1.31
1732 1758 2.670414 GCTGTGAGTATCTGCACAAGTC 59.330 50.000 0.00 0.00 43.65 3.01
1742 1782 5.977725 TCTGTTAATTAGCGCTGTGAGTATC 59.022 40.000 22.90 9.10 0.00 2.24
1750 1790 4.026804 CCGTACTTCTGTTAATTAGCGCTG 60.027 45.833 22.90 0.00 0.00 5.18
1754 1794 8.966194 GTTCTATCCGTACTTCTGTTAATTAGC 58.034 37.037 0.00 0.00 0.00 3.09
1756 1796 9.793252 GTGTTCTATCCGTACTTCTGTTAATTA 57.207 33.333 0.00 0.00 0.00 1.40
1772 1812 6.111768 CATTAGTGCAGTTGTGTTCTATCC 57.888 41.667 0.00 0.00 0.00 2.59
1815 1855 6.528537 TTTACATTATGCTTGCTGTTGGAT 57.471 33.333 0.00 0.00 0.00 3.41
1823 1863 9.695526 TGATTCCATATTTTACATTATGCTTGC 57.304 29.630 0.00 0.00 0.00 4.01
1836 1876 7.156673 GGTTGCTATGCATGATTCCATATTTT 58.843 34.615 10.16 0.00 38.76 1.82
1859 1903 5.223449 TGGAAGTCTTTTACGAGATTGGT 57.777 39.130 0.00 0.00 0.00 3.67
1860 1904 6.183360 GGAATGGAAGTCTTTTACGAGATTGG 60.183 42.308 0.00 0.00 0.00 3.16
1865 1909 7.042335 AGTATGGAATGGAAGTCTTTTACGAG 58.958 38.462 0.00 0.00 0.00 4.18
1876 1920 7.094205 ACAAAAGCTGTTAGTATGGAATGGAAG 60.094 37.037 0.00 0.00 32.99 3.46
1890 1934 4.071961 TCTCTCTGCACAAAAGCTGTTA 57.928 40.909 0.00 0.00 35.47 2.41
1895 1939 4.698583 ATGATTCTCTCTGCACAAAAGC 57.301 40.909 0.00 0.00 0.00 3.51
1896 1940 8.242053 ACATTTATGATTCTCTCTGCACAAAAG 58.758 33.333 0.00 0.00 0.00 2.27
1897 1941 8.114331 ACATTTATGATTCTCTCTGCACAAAA 57.886 30.769 0.00 0.00 0.00 2.44
1898 1942 7.692460 ACATTTATGATTCTCTCTGCACAAA 57.308 32.000 0.00 0.00 0.00 2.83
1899 1943 7.692460 AACATTTATGATTCTCTCTGCACAA 57.308 32.000 0.00 0.00 0.00 3.33
1900 1944 7.823799 TGTAACATTTATGATTCTCTCTGCACA 59.176 33.333 0.00 0.00 0.00 4.57
1901 1945 8.201554 TGTAACATTTATGATTCTCTCTGCAC 57.798 34.615 0.00 0.00 0.00 4.57
1902 1946 8.969260 ATGTAACATTTATGATTCTCTCTGCA 57.031 30.769 0.00 0.00 0.00 4.41
1903 1947 8.219769 CGATGTAACATTTATGATTCTCTCTGC 58.780 37.037 0.00 0.00 0.00 4.26
1904 1948 8.706936 CCGATGTAACATTTATGATTCTCTCTG 58.293 37.037 0.00 0.00 0.00 3.35
1905 1949 7.386299 GCCGATGTAACATTTATGATTCTCTCT 59.614 37.037 0.00 0.00 0.00 3.10
1907 1951 6.992123 TGCCGATGTAACATTTATGATTCTCT 59.008 34.615 0.00 0.00 0.00 3.10
1908 1952 7.189693 TGCCGATGTAACATTTATGATTCTC 57.810 36.000 0.00 0.00 0.00 2.87
1909 1953 7.750229 ATGCCGATGTAACATTTATGATTCT 57.250 32.000 0.00 0.00 0.00 2.40
1921 1965 9.973246 CAGTTGAATATTATATGCCGATGTAAC 57.027 33.333 0.00 0.00 0.00 2.50
1923 1967 9.936759 TTCAGTTGAATATTATATGCCGATGTA 57.063 29.630 0.00 0.00 0.00 2.29
1924 1968 8.846943 TTCAGTTGAATATTATATGCCGATGT 57.153 30.769 0.00 0.00 0.00 3.06
1950 2010 8.593945 AGCCATCCTTGTAAATCAAAAAGATA 57.406 30.769 0.00 0.00 35.39 1.98
1953 2013 8.469200 TCATAGCCATCCTTGTAAATCAAAAAG 58.531 33.333 0.00 0.00 35.48 2.27
1972 2037 7.811236 CCACAAATGAATATCATTGTCATAGCC 59.189 37.037 6.37 0.00 45.57 3.93
1991 2056 6.150307 TGTCGCAGTGTTTATAATCCACAAAT 59.850 34.615 14.65 0.00 0.00 2.32
1992 2057 5.470437 TGTCGCAGTGTTTATAATCCACAAA 59.530 36.000 14.65 0.13 0.00 2.83
1993 2058 4.998033 TGTCGCAGTGTTTATAATCCACAA 59.002 37.500 14.65 0.38 0.00 3.33
1994 2059 4.570930 TGTCGCAGTGTTTATAATCCACA 58.429 39.130 14.65 2.40 0.00 4.17
1995 2060 4.630069 ACTGTCGCAGTGTTTATAATCCAC 59.370 41.667 10.97 7.41 43.63 4.02
1996 2061 4.827692 ACTGTCGCAGTGTTTATAATCCA 58.172 39.130 10.97 0.00 43.63 3.41
1997 2062 5.121768 ACAACTGTCGCAGTGTTTATAATCC 59.878 40.000 12.22 0.00 44.62 3.01
1998 2063 6.165659 ACAACTGTCGCAGTGTTTATAATC 57.834 37.500 12.22 0.00 44.62 1.75
1999 2064 6.183360 GCTACAACTGTCGCAGTGTTTATAAT 60.183 38.462 12.22 0.00 44.62 1.28
2000 2065 5.119588 GCTACAACTGTCGCAGTGTTTATAA 59.880 40.000 12.22 0.00 44.62 0.98
2001 2066 4.624024 GCTACAACTGTCGCAGTGTTTATA 59.376 41.667 12.22 2.68 44.62 0.98
2002 2067 3.432252 GCTACAACTGTCGCAGTGTTTAT 59.568 43.478 12.22 0.00 44.62 1.40
2003 2068 2.798283 GCTACAACTGTCGCAGTGTTTA 59.202 45.455 12.22 4.95 44.62 2.01
2004 2069 1.597663 GCTACAACTGTCGCAGTGTTT 59.402 47.619 12.22 4.19 44.62 2.83
2005 2070 1.217882 GCTACAACTGTCGCAGTGTT 58.782 50.000 12.22 6.19 44.62 3.32
2006 2071 0.104120 TGCTACAACTGTCGCAGTGT 59.896 50.000 12.22 13.41 44.62 3.55
2007 2072 0.508641 GTGCTACAACTGTCGCAGTG 59.491 55.000 9.10 9.41 45.40 3.66
2008 2073 0.389391 AGTGCTACAACTGTCGCAGT 59.611 50.000 9.10 9.62 45.40 4.40
2009 2074 2.254459 CTAGTGCTACAACTGTCGCAG 58.746 52.381 9.10 5.47 45.40 5.18
2010 2075 1.668919 GCTAGTGCTACAACTGTCGCA 60.669 52.381 5.04 5.04 43.15 5.10
2011 2076 0.992802 GCTAGTGCTACAACTGTCGC 59.007 55.000 0.00 0.00 37.27 5.19
2012 2077 1.986378 GTGCTAGTGCTACAACTGTCG 59.014 52.381 0.00 0.00 40.48 4.35
2013 2078 2.989840 CTGTGCTAGTGCTACAACTGTC 59.010 50.000 0.00 0.00 40.48 3.51
2014 2079 2.628178 TCTGTGCTAGTGCTACAACTGT 59.372 45.455 0.00 0.00 40.48 3.55
2015 2080 3.303881 TCTGTGCTAGTGCTACAACTG 57.696 47.619 0.00 0.00 40.48 3.16
2016 2081 3.574396 TCTTCTGTGCTAGTGCTACAACT 59.426 43.478 0.00 0.00 40.48 3.16
2017 2082 3.914312 TCTTCTGTGCTAGTGCTACAAC 58.086 45.455 0.00 0.00 40.48 3.32
2029 2094 4.502962 AGATAGTTTGAGCTCTTCTGTGC 58.497 43.478 16.19 0.03 0.00 4.57
2034 2099 8.085909 GGAATAGGTAGATAGTTTGAGCTCTTC 58.914 40.741 16.19 4.12 0.00 2.87
2035 2100 7.565398 TGGAATAGGTAGATAGTTTGAGCTCTT 59.435 37.037 16.19 0.66 0.00 2.85
2042 2108 9.950496 ATGCTAATGGAATAGGTAGATAGTTTG 57.050 33.333 0.00 0.00 0.00 2.93
2046 2112 7.790027 AGCATGCTAATGGAATAGGTAGATAG 58.210 38.462 21.21 0.00 34.09 2.08
2052 2118 7.922382 ACTATTAGCATGCTAATGGAATAGGT 58.078 34.615 44.72 29.95 44.81 3.08
2066 2132 6.842163 ACAGAACCGAAAAACTATTAGCATG 58.158 36.000 0.00 0.00 0.00 4.06
2067 2133 7.174253 TGAACAGAACCGAAAAACTATTAGCAT 59.826 33.333 0.00 0.00 0.00 3.79
2072 2138 9.673454 GTTTATGAACAGAACCGAAAAACTATT 57.327 29.630 0.00 0.00 35.79 1.73
2099 2267 9.166173 TGAGATATTGTTGACTTCGAAAATCAT 57.834 29.630 11.45 1.75 0.00 2.45
2139 2307 5.539574 TCTCATTCTGGCCAAATGAAAAAGA 59.460 36.000 28.02 22.33 41.31 2.52
2142 2310 5.279607 CCTTCTCATTCTGGCCAAATGAAAA 60.280 40.000 28.02 23.75 41.31 2.29
2162 2330 9.541143 CTCCTCATCTCTTTACTAATTTCCTTC 57.459 37.037 0.00 0.00 0.00 3.46
2510 2678 3.690475 TCAGAGCTTGCAGAATTCTCA 57.310 42.857 4.57 4.33 0.00 3.27
2530 2698 3.716353 TGTTGGAGCAGGTATGGTATCAT 59.284 43.478 0.00 0.00 37.25 2.45
2551 2719 2.086869 CTGTTGGAGCAGGTATGGTTG 58.913 52.381 0.00 0.00 37.25 3.77
2552 2720 1.985159 TCTGTTGGAGCAGGTATGGTT 59.015 47.619 0.00 0.00 37.25 3.67
2553 2721 1.656587 TCTGTTGGAGCAGGTATGGT 58.343 50.000 0.00 0.00 40.66 3.55
2554 2722 2.237143 TCTTCTGTTGGAGCAGGTATGG 59.763 50.000 0.00 0.00 37.12 2.74
2555 2723 3.616956 TCTTCTGTTGGAGCAGGTATG 57.383 47.619 0.00 0.00 37.12 2.39
2556 2724 3.776969 TGATCTTCTGTTGGAGCAGGTAT 59.223 43.478 0.00 0.00 37.12 2.73
2557 2725 3.173151 TGATCTTCTGTTGGAGCAGGTA 58.827 45.455 0.00 0.00 37.12 3.08
2558 2726 1.980765 TGATCTTCTGTTGGAGCAGGT 59.019 47.619 0.00 0.00 37.12 4.00
2559 2727 2.775911 TGATCTTCTGTTGGAGCAGG 57.224 50.000 0.00 0.00 37.12 4.85
2560 2728 3.626670 GGAATGATCTTCTGTTGGAGCAG 59.373 47.826 0.00 0.00 37.81 4.24
2561 2729 3.265221 AGGAATGATCTTCTGTTGGAGCA 59.735 43.478 0.00 0.00 32.44 4.26
2562 2730 3.883669 AGGAATGATCTTCTGTTGGAGC 58.116 45.455 0.00 0.00 0.00 4.70
2563 2731 8.206867 TGTTATAGGAATGATCTTCTGTTGGAG 58.793 37.037 0.00 0.00 0.00 3.86
2564 2732 8.089625 TGTTATAGGAATGATCTTCTGTTGGA 57.910 34.615 0.00 0.00 0.00 3.53
2565 2733 7.041508 GCTGTTATAGGAATGATCTTCTGTTGG 60.042 40.741 0.00 0.00 0.00 3.77
2566 2734 7.496920 TGCTGTTATAGGAATGATCTTCTGTTG 59.503 37.037 0.00 0.00 0.00 3.33
2567 2735 7.497249 GTGCTGTTATAGGAATGATCTTCTGTT 59.503 37.037 0.00 0.00 0.00 3.16
2568 2736 6.989169 GTGCTGTTATAGGAATGATCTTCTGT 59.011 38.462 0.00 0.00 0.00 3.41
2590 2761 0.447011 GTTGCTCTCTGATGCAGTGC 59.553 55.000 8.58 8.58 40.46 4.40
2764 2935 3.430098 GCCCACTACAGTTCTCTCATCTG 60.430 52.174 0.00 0.00 35.60 2.90
2827 2998 3.633986 ACTGGAGTTTGCTTTTTCCTCAG 59.366 43.478 0.00 0.00 0.00 3.35
2856 3027 2.105006 TCTTCTGCTTGATCAGGTGC 57.895 50.000 6.70 8.34 34.91 5.01
3028 3199 2.569853 TCCTCTGAATGCGTTCCCTTTA 59.430 45.455 15.96 0.00 33.26 1.85
3218 3389 8.321917 AGATCTTCATCTCACCATCAGGGTTG 62.322 46.154 0.00 0.00 40.51 3.77
3290 3461 0.972471 CTTGGGGGTCCTCCAATTGC 60.972 60.000 24.17 0.00 42.63 3.56
3481 3652 3.872603 TGCTGTGGTCGCCTTGGT 61.873 61.111 0.00 0.00 0.00 3.67
3701 3872 0.246635 TCCTACGCCTCTTGCTTGTC 59.753 55.000 0.00 0.00 38.05 3.18
3737 3908 3.179902 TCGGTCCTCTTCCTCCTTTTA 57.820 47.619 0.00 0.00 0.00 1.52
3821 3992 6.147864 TCTTCAAATCCAAACAGTTCCTTG 57.852 37.500 0.00 0.00 0.00 3.61
4061 4232 5.220605 GCAAAATGGCTTACTACTAGGTTCG 60.221 44.000 0.00 0.00 0.00 3.95
4081 4253 4.702612 TGTTCACAGGAAGTAAAGTGCAAA 59.297 37.500 0.00 0.00 32.62 3.68
4211 4383 1.266718 GCTTGGCAAACATGTCTTCGA 59.733 47.619 0.00 0.00 0.00 3.71
4242 4414 7.809806 GCTGGTAATTTGTTTCATATATCTGCC 59.190 37.037 0.00 0.00 0.00 4.85
4243 4415 8.352201 TGCTGGTAATTTGTTTCATATATCTGC 58.648 33.333 0.00 0.00 0.00 4.26
4772 4945 7.899973 ACATTCTTGTGAATTTGATAGGCTTT 58.100 30.769 0.00 0.00 40.61 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.