Multiple sequence alignment - TraesCS2A01G526900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G526900 chr2A 100.000 5946 0 0 1 5946 746856541 746850596 0.000000e+00 10981.0
1 TraesCS2A01G526900 chr2A 88.818 626 45 5 1 604 569286967 569287589 0.000000e+00 745.0
2 TraesCS2A01G526900 chr2A 83.212 274 36 7 5207 5476 728614389 728614122 5.950000e-60 243.0
3 TraesCS2A01G526900 chr2D 94.156 3063 122 22 2920 5946 616636524 616633483 0.000000e+00 4612.0
4 TraesCS2A01G526900 chr2D 88.742 453 18 10 652 1094 616637678 616637249 1.900000e-144 523.0
5 TraesCS2A01G526900 chr2D 86.918 451 41 13 1282 1722 616636983 616636541 1.930000e-134 490.0
6 TraesCS2A01G526900 chr2B 93.245 2265 107 18 2918 5149 751843468 751841217 0.000000e+00 3293.0
7 TraesCS2A01G526900 chr2B 91.321 1037 65 13 1898 2912 159317476 159316443 0.000000e+00 1393.0
8 TraesCS2A01G526900 chr2B 83.413 627 53 17 1143 1742 751844078 751843476 8.770000e-148 534.0
9 TraesCS2A01G526900 chr2B 84.394 487 27 22 652 1110 751844643 751844178 3.290000e-117 433.0
10 TraesCS2A01G526900 chr2B 80.501 359 61 6 5206 5562 53712444 53712093 3.530000e-67 267.0
11 TraesCS2A01G526900 chr2B 82.935 293 44 4 5202 5493 720796708 720796421 5.910000e-65 259.0
12 TraesCS2A01G526900 chr2B 81.308 321 49 9 5201 5516 61261712 61262026 3.560000e-62 250.0
13 TraesCS2A01G526900 chr3A 93.357 1144 60 11 1782 2912 47664233 47663093 0.000000e+00 1677.0
14 TraesCS2A01G526900 chr3A 89.633 627 41 4 1 604 663280292 663279667 0.000000e+00 776.0
15 TraesCS2A01G526900 chr3A 82.833 600 85 12 14 604 55218818 55218228 6.830000e-144 521.0
16 TraesCS2A01G526900 chr3A 82.558 602 79 16 10 602 555442873 555443457 1.910000e-139 507.0
17 TraesCS2A01G526900 chr3A 80.033 611 89 21 10 604 715348156 715347563 7.120000e-114 422.0
18 TraesCS2A01G526900 chr3A 91.500 200 15 2 4367 4565 557949763 557949961 2.110000e-69 274.0
19 TraesCS2A01G526900 chr7A 92.683 1148 56 12 1782 2913 62473324 62472189 0.000000e+00 1629.0
20 TraesCS2A01G526900 chr7A 94.406 876 45 3 2040 2914 652278886 652279758 0.000000e+00 1343.0
21 TraesCS2A01G526900 chr7A 88.535 628 49 8 1 606 180608302 180608928 0.000000e+00 739.0
22 TraesCS2A01G526900 chr7A 81.016 374 56 10 5201 5570 721589140 721589502 3.510000e-72 283.0
23 TraesCS2A01G526900 chr6A 92.114 1154 67 11 1782 2913 27060950 27059799 0.000000e+00 1605.0
24 TraesCS2A01G526900 chr6A 88.816 152 17 0 4369 4520 53156894 53156743 2.830000e-43 187.0
25 TraesCS2A01G526900 chr5B 89.948 1154 91 12 1782 2913 686834328 686835478 0.000000e+00 1465.0
26 TraesCS2A01G526900 chr5B 88.116 1136 98 19 1782 2913 686902224 686903326 0.000000e+00 1315.0
27 TraesCS2A01G526900 chr5B 86.747 166 17 5 4363 4525 562048317 562048480 4.730000e-41 180.0
28 TraesCS2A01G526900 chr3B 88.802 1152 94 15 1782 2911 460123098 460121960 0.000000e+00 1380.0
29 TraesCS2A01G526900 chr3B 79.912 453 67 18 4144 4583 559341549 559341108 1.610000e-80 311.0
30 TraesCS2A01G526900 chr4A 88.042 1154 112 14 1782 2913 662638928 662637779 0.000000e+00 1343.0
31 TraesCS2A01G526900 chr4A 89.314 627 45 2 1 605 629119807 629119181 0.000000e+00 767.0
32 TraesCS2A01G526900 chr1A 89.617 626 40 5 1 604 469648068 469648690 0.000000e+00 773.0
33 TraesCS2A01G526900 chr7B 87.700 626 51 8 1 604 145822472 145823093 0.000000e+00 706.0
34 TraesCS2A01G526900 chr7B 82.787 610 77 25 10 603 189491175 189491772 2.460000e-143 520.0
35 TraesCS2A01G526900 chr7B 75.041 605 92 38 1786 2347 726426832 726427420 6.000000e-55 226.0
36 TraesCS2A01G526900 chr7B 90.909 55 4 1 3393 3446 39542661 39542607 8.270000e-09 73.1
37 TraesCS2A01G526900 chr7B 90.909 55 4 1 3393 3446 711498746 711498692 8.270000e-09 73.1
38 TraesCS2A01G526900 chr3D 84.565 609 74 17 10 606 511423093 511423693 2.390000e-163 586.0
39 TraesCS2A01G526900 chr3D 89.450 218 21 2 4367 4583 427816891 427816675 2.110000e-69 274.0
40 TraesCS2A01G526900 chr1B 83.279 610 74 21 10 606 520369749 520369155 2.440000e-148 536.0
41 TraesCS2A01G526900 chr5D 81.833 611 87 17 10 610 426471669 426471073 5.350000e-135 492.0
42 TraesCS2A01G526900 chr4D 80.331 605 92 16 10 604 320775201 320775788 3.290000e-117 433.0
43 TraesCS2A01G526900 chr4B 79.872 626 90 22 1 614 575331803 575332404 5.510000e-115 425.0
44 TraesCS2A01G526900 chrUn 81.616 359 57 6 5206 5562 24925713 24925362 7.540000e-74 289.0
45 TraesCS2A01G526900 chrUn 76.026 609 98 35 1788 2359 31652567 31651970 7.590000e-69 272.0
46 TraesCS2A01G526900 chrUn 88.816 152 17 0 4369 4520 98211670 98211519 2.830000e-43 187.0
47 TraesCS2A01G526900 chrUn 81.308 214 34 6 1794 2002 343708517 343708729 1.020000e-37 169.0
48 TraesCS2A01G526900 chrUn 81.308 214 34 6 1794 2002 444569312 444569524 1.020000e-37 169.0
49 TraesCS2A01G526900 chr1D 81.818 352 47 12 5201 5551 214268907 214268572 4.540000e-71 279.0
50 TraesCS2A01G526900 chr1D 75.597 586 97 31 1788 2335 42956230 42955653 1.280000e-61 248.0
51 TraesCS2A01G526900 chr6D 81.746 252 34 7 5307 5553 7863053 7862809 3.630000e-47 200.0
52 TraesCS2A01G526900 chr6B 88.816 152 17 0 4369 4520 107771882 107771731 2.830000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G526900 chr2A 746850596 746856541 5945 True 10981 10981 100.000000 1 5946 1 chr2A.!!$R2 5945
1 TraesCS2A01G526900 chr2A 569286967 569287589 622 False 745 745 88.818000 1 604 1 chr2A.!!$F1 603
2 TraesCS2A01G526900 chr2D 616633483 616637678 4195 True 1875 4612 89.938667 652 5946 3 chr2D.!!$R1 5294
3 TraesCS2A01G526900 chr2B 751841217 751844643 3426 True 1420 3293 87.017333 652 5149 3 chr2B.!!$R4 4497
4 TraesCS2A01G526900 chr2B 159316443 159317476 1033 True 1393 1393 91.321000 1898 2912 1 chr2B.!!$R2 1014
5 TraesCS2A01G526900 chr3A 47663093 47664233 1140 True 1677 1677 93.357000 1782 2912 1 chr3A.!!$R1 1130
6 TraesCS2A01G526900 chr3A 663279667 663280292 625 True 776 776 89.633000 1 604 1 chr3A.!!$R3 603
7 TraesCS2A01G526900 chr3A 55218228 55218818 590 True 521 521 82.833000 14 604 1 chr3A.!!$R2 590
8 TraesCS2A01G526900 chr3A 555442873 555443457 584 False 507 507 82.558000 10 602 1 chr3A.!!$F1 592
9 TraesCS2A01G526900 chr3A 715347563 715348156 593 True 422 422 80.033000 10 604 1 chr3A.!!$R4 594
10 TraesCS2A01G526900 chr7A 62472189 62473324 1135 True 1629 1629 92.683000 1782 2913 1 chr7A.!!$R1 1131
11 TraesCS2A01G526900 chr7A 652278886 652279758 872 False 1343 1343 94.406000 2040 2914 1 chr7A.!!$F2 874
12 TraesCS2A01G526900 chr7A 180608302 180608928 626 False 739 739 88.535000 1 606 1 chr7A.!!$F1 605
13 TraesCS2A01G526900 chr6A 27059799 27060950 1151 True 1605 1605 92.114000 1782 2913 1 chr6A.!!$R1 1131
14 TraesCS2A01G526900 chr5B 686834328 686835478 1150 False 1465 1465 89.948000 1782 2913 1 chr5B.!!$F2 1131
15 TraesCS2A01G526900 chr5B 686902224 686903326 1102 False 1315 1315 88.116000 1782 2913 1 chr5B.!!$F3 1131
16 TraesCS2A01G526900 chr3B 460121960 460123098 1138 True 1380 1380 88.802000 1782 2911 1 chr3B.!!$R1 1129
17 TraesCS2A01G526900 chr4A 662637779 662638928 1149 True 1343 1343 88.042000 1782 2913 1 chr4A.!!$R2 1131
18 TraesCS2A01G526900 chr4A 629119181 629119807 626 True 767 767 89.314000 1 605 1 chr4A.!!$R1 604
19 TraesCS2A01G526900 chr1A 469648068 469648690 622 False 773 773 89.617000 1 604 1 chr1A.!!$F1 603
20 TraesCS2A01G526900 chr7B 145822472 145823093 621 False 706 706 87.700000 1 604 1 chr7B.!!$F1 603
21 TraesCS2A01G526900 chr7B 189491175 189491772 597 False 520 520 82.787000 10 603 1 chr7B.!!$F2 593
22 TraesCS2A01G526900 chr7B 726426832 726427420 588 False 226 226 75.041000 1786 2347 1 chr7B.!!$F3 561
23 TraesCS2A01G526900 chr3D 511423093 511423693 600 False 586 586 84.565000 10 606 1 chr3D.!!$F1 596
24 TraesCS2A01G526900 chr1B 520369155 520369749 594 True 536 536 83.279000 10 606 1 chr1B.!!$R1 596
25 TraesCS2A01G526900 chr5D 426471073 426471669 596 True 492 492 81.833000 10 610 1 chr5D.!!$R1 600
26 TraesCS2A01G526900 chr4D 320775201 320775788 587 False 433 433 80.331000 10 604 1 chr4D.!!$F1 594
27 TraesCS2A01G526900 chr4B 575331803 575332404 601 False 425 425 79.872000 1 614 1 chr4B.!!$F1 613
28 TraesCS2A01G526900 chrUn 31651970 31652567 597 True 272 272 76.026000 1788 2359 1 chrUn.!!$R2 571
29 TraesCS2A01G526900 chr1D 42955653 42956230 577 True 248 248 75.597000 1788 2335 1 chr1D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 701 0.027063 CGGTTTATTTGTAGCGGCGG 59.973 55.0 9.78 0.00 0.00 6.13 F
2305 2604 0.108585 AACCTTCTTGAAGGCGCTGA 59.891 50.0 24.58 0.00 43.80 4.26 F
2889 3230 0.251787 AATTCAAAGCCGGGCTCCTT 60.252 50.0 24.08 11.39 38.25 3.36 F
4510 4859 0.250467 TGGTGCAGGTGCTCTTCTTC 60.250 55.0 3.18 0.00 42.66 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 2757 0.603975 GAAGCCACAAGAGCGGAACT 60.604 55.000 0.0 0.0 34.64 3.01 R
3194 3543 0.460284 ATCGTAGCAGAACTTGGCGG 60.460 55.000 0.0 0.0 34.54 6.13 R
4644 4996 1.833492 TCGTTGTTCTCCGACCCCA 60.833 57.895 0.0 0.0 0.00 4.96 R
5817 6213 1.377536 GAGCATCAGAAACAGGGAGC 58.622 55.000 0.0 0.0 33.17 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.023949 GCACTGCTCCGGAGATGGT 62.024 63.158 35.69 24.00 0.00 3.55
58 59 2.362503 TGCTCCGGAGATGGTCGT 60.363 61.111 35.69 0.00 0.00 4.34
87 94 1.152756 GTGAACTGGTGCCCCACTT 60.153 57.895 0.00 0.00 35.17 3.16
239 294 4.373116 GGCCAGTGAAGACCGCGA 62.373 66.667 8.23 0.00 0.00 5.87
240 295 3.112709 GCCAGTGAAGACCGCGAC 61.113 66.667 8.23 0.40 0.00 5.19
241 296 2.805353 CCAGTGAAGACCGCGACG 60.805 66.667 8.23 0.00 0.00 5.12
284 339 3.050275 GAGCGCACGGGAAGCTTT 61.050 61.111 11.47 0.00 41.84 3.51
285 340 2.594592 AGCGCACGGGAAGCTTTT 60.595 55.556 11.47 0.00 38.13 2.27
286 341 2.130073 GAGCGCACGGGAAGCTTTTT 62.130 55.000 11.47 0.00 41.84 1.94
325 380 9.875708 TTATATGTTAATTATGAAACTGGGCCT 57.124 29.630 4.53 0.00 0.00 5.19
326 381 8.782137 ATATGTTAATTATGAAACTGGGCCTT 57.218 30.769 4.53 0.00 0.00 4.35
327 382 6.926630 TGTTAATTATGAAACTGGGCCTTT 57.073 33.333 4.53 0.00 0.00 3.11
328 383 7.309770 TGTTAATTATGAAACTGGGCCTTTT 57.690 32.000 4.53 4.02 0.00 2.27
329 384 8.423906 TGTTAATTATGAAACTGGGCCTTTTA 57.576 30.769 4.53 0.00 0.00 1.52
330 385 8.871125 TGTTAATTATGAAACTGGGCCTTTTAA 58.129 29.630 4.53 0.00 0.00 1.52
331 386 9.366216 GTTAATTATGAAACTGGGCCTTTTAAG 57.634 33.333 4.53 0.00 0.00 1.85
332 387 7.553504 AATTATGAAACTGGGCCTTTTAAGT 57.446 32.000 4.53 0.00 0.00 2.24
333 388 4.871933 ATGAAACTGGGCCTTTTAAGTG 57.128 40.909 4.53 0.00 0.00 3.16
334 389 2.962421 TGAAACTGGGCCTTTTAAGTGG 59.038 45.455 4.53 0.00 0.00 4.00
340 395 1.584495 GCCTTTTAAGTGGCCGTGG 59.416 57.895 0.00 0.00 43.11 4.94
341 396 0.891904 GCCTTTTAAGTGGCCGTGGA 60.892 55.000 0.00 0.00 43.11 4.02
342 397 1.611519 CCTTTTAAGTGGCCGTGGAA 58.388 50.000 0.00 0.00 0.00 3.53
343 398 1.957877 CCTTTTAAGTGGCCGTGGAAA 59.042 47.619 0.00 0.00 0.00 3.13
344 399 2.560981 CCTTTTAAGTGGCCGTGGAAAT 59.439 45.455 0.00 0.00 0.00 2.17
345 400 3.006430 CCTTTTAAGTGGCCGTGGAAATT 59.994 43.478 0.00 0.00 0.00 1.82
346 401 3.651803 TTTAAGTGGCCGTGGAAATTG 57.348 42.857 0.00 0.00 0.00 2.32
347 402 1.540267 TAAGTGGCCGTGGAAATTGG 58.460 50.000 0.00 0.00 0.00 3.16
348 403 1.184970 AAGTGGCCGTGGAAATTGGG 61.185 55.000 0.00 0.00 0.00 4.12
351 406 4.128388 GCCGTGGAAATTGGGCCG 62.128 66.667 0.00 0.00 39.67 6.13
352 407 2.675075 CCGTGGAAATTGGGCCGT 60.675 61.111 0.00 0.00 0.00 5.68
353 408 2.272447 CCGTGGAAATTGGGCCGTT 61.272 57.895 0.00 0.00 0.00 4.44
354 409 1.663173 CGTGGAAATTGGGCCGTTT 59.337 52.632 6.44 6.44 0.00 3.60
355 410 0.032815 CGTGGAAATTGGGCCGTTTT 59.967 50.000 7.95 5.78 0.00 2.43
356 411 1.507562 GTGGAAATTGGGCCGTTTTG 58.492 50.000 8.09 0.00 0.00 2.44
357 412 1.123928 TGGAAATTGGGCCGTTTTGT 58.876 45.000 8.09 0.00 0.00 2.83
358 413 1.202580 TGGAAATTGGGCCGTTTTGTG 60.203 47.619 8.09 0.00 0.00 3.33
359 414 1.069358 GGAAATTGGGCCGTTTTGTGA 59.931 47.619 8.09 0.00 0.00 3.58
360 415 2.131972 GAAATTGGGCCGTTTTGTGAC 58.868 47.619 8.09 0.00 0.00 3.67
361 416 0.391228 AATTGGGCCGTTTTGTGACC 59.609 50.000 0.00 0.00 0.00 4.02
362 417 1.801309 ATTGGGCCGTTTTGTGACCG 61.801 55.000 0.00 0.00 0.00 4.79
363 418 2.592287 GGGCCGTTTTGTGACCGA 60.592 61.111 0.00 0.00 0.00 4.69
364 419 2.635338 GGCCGTTTTGTGACCGAC 59.365 61.111 0.00 0.00 0.00 4.79
365 420 2.635338 GCCGTTTTGTGACCGACC 59.365 61.111 0.00 0.00 0.00 4.79
366 421 2.900167 GCCGTTTTGTGACCGACCC 61.900 63.158 0.00 0.00 0.00 4.46
367 422 2.255881 CCGTTTTGTGACCGACCCC 61.256 63.158 0.00 0.00 0.00 4.95
368 423 1.227734 CGTTTTGTGACCGACCCCT 60.228 57.895 0.00 0.00 0.00 4.79
369 424 0.033781 CGTTTTGTGACCGACCCCTA 59.966 55.000 0.00 0.00 0.00 3.53
370 425 1.338389 CGTTTTGTGACCGACCCCTAT 60.338 52.381 0.00 0.00 0.00 2.57
371 426 2.094078 CGTTTTGTGACCGACCCCTATA 60.094 50.000 0.00 0.00 0.00 1.31
372 427 3.431207 CGTTTTGTGACCGACCCCTATAT 60.431 47.826 0.00 0.00 0.00 0.86
373 428 4.202141 CGTTTTGTGACCGACCCCTATATA 60.202 45.833 0.00 0.00 0.00 0.86
374 429 5.510179 CGTTTTGTGACCGACCCCTATATAT 60.510 44.000 0.00 0.00 0.00 0.86
375 430 5.477607 TTTGTGACCGACCCCTATATATG 57.522 43.478 0.00 0.00 0.00 1.78
376 431 4.122337 TGTGACCGACCCCTATATATGT 57.878 45.455 0.00 0.00 0.00 2.29
377 432 4.485875 TGTGACCGACCCCTATATATGTT 58.514 43.478 0.00 0.00 0.00 2.71
378 433 4.903049 TGTGACCGACCCCTATATATGTTT 59.097 41.667 0.00 0.00 0.00 2.83
379 434 5.367352 TGTGACCGACCCCTATATATGTTTT 59.633 40.000 0.00 0.00 0.00 2.43
380 435 6.554228 TGTGACCGACCCCTATATATGTTTTA 59.446 38.462 0.00 0.00 0.00 1.52
381 436 7.236019 TGTGACCGACCCCTATATATGTTTTAT 59.764 37.037 0.00 0.00 0.00 1.40
382 437 7.548075 GTGACCGACCCCTATATATGTTTTATG 59.452 40.741 0.00 0.00 0.00 1.90
383 438 7.236019 TGACCGACCCCTATATATGTTTTATGT 59.764 37.037 0.00 0.00 0.00 2.29
384 439 7.981142 ACCGACCCCTATATATGTTTTATGTT 58.019 34.615 0.00 0.00 0.00 2.71
385 440 8.442374 ACCGACCCCTATATATGTTTTATGTTT 58.558 33.333 0.00 0.00 0.00 2.83
386 441 9.292195 CCGACCCCTATATATGTTTTATGTTTT 57.708 33.333 0.00 0.00 0.00 2.43
459 514 6.907206 TTATTTTTATTCACGTCTACCCGG 57.093 37.500 0.00 0.00 0.00 5.73
460 515 4.533919 TTTTTATTCACGTCTACCCGGA 57.466 40.909 0.73 0.00 0.00 5.14
461 516 3.508744 TTTATTCACGTCTACCCGGAC 57.491 47.619 0.73 0.00 0.00 4.79
462 517 2.127271 TATTCACGTCTACCCGGACA 57.873 50.000 0.73 0.00 36.12 4.02
463 518 1.481871 ATTCACGTCTACCCGGACAT 58.518 50.000 0.73 0.00 36.12 3.06
464 519 0.528924 TTCACGTCTACCCGGACATG 59.471 55.000 0.73 0.00 36.12 3.21
465 520 0.322726 TCACGTCTACCCGGACATGA 60.323 55.000 0.73 0.00 36.33 3.07
466 521 0.744874 CACGTCTACCCGGACATGAT 59.255 55.000 0.73 0.00 32.06 2.45
467 522 1.136305 CACGTCTACCCGGACATGATT 59.864 52.381 0.73 0.00 32.06 2.57
468 523 1.829222 ACGTCTACCCGGACATGATTT 59.171 47.619 0.73 0.00 36.12 2.17
469 524 2.201732 CGTCTACCCGGACATGATTTG 58.798 52.381 0.73 0.00 36.12 2.32
470 525 2.159156 CGTCTACCCGGACATGATTTGA 60.159 50.000 0.73 0.00 36.12 2.69
471 526 3.677700 CGTCTACCCGGACATGATTTGAA 60.678 47.826 0.73 0.00 36.12 2.69
472 527 3.871594 GTCTACCCGGACATGATTTGAAG 59.128 47.826 0.73 0.00 36.35 3.02
473 528 2.879103 ACCCGGACATGATTTGAAGT 57.121 45.000 0.73 0.00 0.00 3.01
474 529 2.436417 ACCCGGACATGATTTGAAGTG 58.564 47.619 0.73 0.00 0.00 3.16
475 530 1.133025 CCCGGACATGATTTGAAGTGC 59.867 52.381 0.73 0.00 0.00 4.40
476 531 1.202065 CCGGACATGATTTGAAGTGCG 60.202 52.381 0.00 0.00 43.85 5.34
477 532 1.202065 CGGACATGATTTGAAGTGCGG 60.202 52.381 0.00 0.00 41.19 5.69
478 533 1.468054 GGACATGATTTGAAGTGCGGC 60.468 52.381 0.00 0.00 0.00 6.53
479 534 0.527565 ACATGATTTGAAGTGCGGCC 59.472 50.000 0.00 0.00 0.00 6.13
480 535 0.523968 CATGATTTGAAGTGCGGCCG 60.524 55.000 24.05 24.05 0.00 6.13
481 536 2.202479 GATTTGAAGTGCGGCCGC 60.202 61.111 42.35 42.35 42.35 6.53
506 561 3.788766 GCGCACACACGACCCATC 61.789 66.667 0.30 0.00 34.06 3.51
507 562 2.048222 CGCACACACGACCCATCT 60.048 61.111 0.00 0.00 34.06 2.90
508 563 2.382746 CGCACACACGACCCATCTG 61.383 63.158 0.00 0.00 34.06 2.90
509 564 1.005037 GCACACACGACCCATCTGA 60.005 57.895 0.00 0.00 0.00 3.27
510 565 1.291877 GCACACACGACCCATCTGAC 61.292 60.000 0.00 0.00 0.00 3.51
511 566 0.033366 CACACACGACCCATCTGACA 59.967 55.000 0.00 0.00 0.00 3.58
512 567 0.756294 ACACACGACCCATCTGACAA 59.244 50.000 0.00 0.00 0.00 3.18
513 568 1.140052 ACACACGACCCATCTGACAAA 59.860 47.619 0.00 0.00 0.00 2.83
514 569 1.800586 CACACGACCCATCTGACAAAG 59.199 52.381 0.00 0.00 0.00 2.77
515 570 0.798776 CACGACCCATCTGACAAAGC 59.201 55.000 0.00 0.00 0.00 3.51
516 571 0.321653 ACGACCCATCTGACAAAGCC 60.322 55.000 0.00 0.00 0.00 4.35
517 572 1.361668 CGACCCATCTGACAAAGCCG 61.362 60.000 0.00 0.00 0.00 5.52
518 573 1.002134 ACCCATCTGACAAAGCCGG 60.002 57.895 0.00 0.00 0.00 6.13
519 574 1.299648 CCCATCTGACAAAGCCGGA 59.700 57.895 5.05 0.00 0.00 5.14
520 575 1.026718 CCCATCTGACAAAGCCGGAC 61.027 60.000 5.05 0.00 0.00 4.79
521 576 0.321564 CCATCTGACAAAGCCGGACA 60.322 55.000 5.05 0.00 0.00 4.02
522 577 0.798776 CATCTGACAAAGCCGGACAC 59.201 55.000 5.05 0.00 0.00 3.67
523 578 0.670546 ATCTGACAAAGCCGGACACG 60.671 55.000 5.05 0.00 40.55 4.49
549 604 4.794648 CATCGGCGCCCCAAAGGA 62.795 66.667 23.46 11.83 38.24 3.36
550 605 4.041762 ATCGGCGCCCCAAAGGAA 62.042 61.111 23.46 0.00 38.24 3.36
553 608 2.915137 GGCGCCCCAAAGGAACAA 60.915 61.111 18.11 0.00 38.24 2.83
554 609 2.503382 GGCGCCCCAAAGGAACAAA 61.503 57.895 18.11 0.00 38.24 2.83
555 610 1.443828 GCGCCCCAAAGGAACAAAA 59.556 52.632 0.00 0.00 38.24 2.44
556 611 0.034756 GCGCCCCAAAGGAACAAAAT 59.965 50.000 0.00 0.00 38.24 1.82
557 612 1.939381 GCGCCCCAAAGGAACAAAATC 60.939 52.381 0.00 0.00 38.24 2.17
558 613 1.337728 CGCCCCAAAGGAACAAAATCC 60.338 52.381 0.00 0.00 38.24 3.01
559 614 1.337728 GCCCCAAAGGAACAAAATCCG 60.338 52.381 0.00 0.00 44.60 4.18
560 615 1.275010 CCCCAAAGGAACAAAATCCGG 59.725 52.381 0.00 0.00 44.60 5.14
561 616 1.337728 CCCAAAGGAACAAAATCCGGC 60.338 52.381 0.00 0.00 44.60 6.13
562 617 1.337728 CCAAAGGAACAAAATCCGGCC 60.338 52.381 0.00 0.00 44.60 6.13
563 618 1.342819 CAAAGGAACAAAATCCGGCCA 59.657 47.619 2.24 0.00 44.60 5.36
564 619 1.710816 AAGGAACAAAATCCGGCCAA 58.289 45.000 2.24 0.00 44.60 4.52
565 620 1.937191 AGGAACAAAATCCGGCCAAT 58.063 45.000 2.24 0.00 44.60 3.16
566 621 2.256306 AGGAACAAAATCCGGCCAATT 58.744 42.857 2.24 0.00 44.60 2.32
567 622 2.233676 AGGAACAAAATCCGGCCAATTC 59.766 45.455 2.24 0.00 44.60 2.17
568 623 2.258755 GAACAAAATCCGGCCAATTCG 58.741 47.619 2.24 0.00 0.00 3.34
576 631 2.782615 GGCCAATTCGGACGTTCG 59.217 61.111 10.83 10.83 36.56 3.95
577 632 2.030958 GGCCAATTCGGACGTTCGT 61.031 57.895 17.28 0.00 36.56 3.85
578 633 1.571215 GGCCAATTCGGACGTTCGTT 61.571 55.000 17.28 0.41 36.56 3.85
579 634 0.236449 GCCAATTCGGACGTTCGTTT 59.764 50.000 17.28 8.70 36.56 3.60
580 635 1.460359 GCCAATTCGGACGTTCGTTTA 59.540 47.619 17.28 3.47 36.56 2.01
581 636 2.096318 GCCAATTCGGACGTTCGTTTAA 60.096 45.455 17.28 3.43 36.56 1.52
582 637 3.728600 CCAATTCGGACGTTCGTTTAAG 58.271 45.455 17.28 3.95 36.56 1.85
583 638 3.423907 CCAATTCGGACGTTCGTTTAAGG 60.424 47.826 17.28 9.38 36.56 2.69
584 639 2.507339 TTCGGACGTTCGTTTAAGGT 57.493 45.000 17.28 0.00 38.85 3.50
587 642 3.915097 GACGTTCGTTTAAGGTCGC 57.085 52.632 0.00 0.00 41.59 5.19
588 643 0.090178 GACGTTCGTTTAAGGTCGCG 59.910 55.000 0.00 0.00 41.59 5.87
589 644 1.225289 CGTTCGTTTAAGGTCGCGC 60.225 57.895 0.00 0.00 0.00 6.86
590 645 1.225289 GTTCGTTTAAGGTCGCGCG 60.225 57.895 26.76 26.76 0.00 6.86
591 646 2.374226 TTCGTTTAAGGTCGCGCGG 61.374 57.895 31.69 11.75 0.00 6.46
592 647 3.107661 CGTTTAAGGTCGCGCGGT 61.108 61.111 31.69 15.28 0.00 5.68
593 648 2.472934 GTTTAAGGTCGCGCGGTG 59.527 61.111 31.69 1.17 0.00 4.94
594 649 2.739287 TTTAAGGTCGCGCGGTGG 60.739 61.111 31.69 0.71 0.00 4.61
595 650 3.223710 TTTAAGGTCGCGCGGTGGA 62.224 57.895 31.69 7.56 0.00 4.02
596 651 3.636313 TTAAGGTCGCGCGGTGGAG 62.636 63.158 31.69 0.00 0.00 3.86
605 660 2.349755 GCGGTGGAGTTGGCCTTA 59.650 61.111 3.32 0.00 0.00 2.69
606 661 2.038837 GCGGTGGAGTTGGCCTTAC 61.039 63.158 3.32 1.81 0.00 2.34
607 662 1.373435 CGGTGGAGTTGGCCTTACA 59.627 57.895 3.32 0.00 0.00 2.41
608 663 0.250553 CGGTGGAGTTGGCCTTACAA 60.251 55.000 3.32 0.00 0.00 2.41
609 664 1.534729 GGTGGAGTTGGCCTTACAAG 58.465 55.000 3.32 0.00 0.00 3.16
610 665 0.881796 GTGGAGTTGGCCTTACAAGC 59.118 55.000 3.32 0.00 0.00 4.01
611 666 0.476338 TGGAGTTGGCCTTACAAGCA 59.524 50.000 3.32 0.00 0.00 3.91
612 667 1.168714 GGAGTTGGCCTTACAAGCAG 58.831 55.000 3.32 0.00 0.00 4.24
613 668 0.523519 GAGTTGGCCTTACAAGCAGC 59.476 55.000 3.32 0.00 0.00 5.25
614 669 0.895559 AGTTGGCCTTACAAGCAGCC 60.896 55.000 3.32 0.00 45.96 4.85
615 670 0.895559 GTTGGCCTTACAAGCAGCCT 60.896 55.000 3.32 0.00 45.94 4.58
616 671 0.695924 TTGGCCTTACAAGCAGCCTA 59.304 50.000 3.32 1.55 45.94 3.93
617 672 0.695924 TGGCCTTACAAGCAGCCTAA 59.304 50.000 3.32 0.00 45.94 2.69
618 673 1.340017 TGGCCTTACAAGCAGCCTAAG 60.340 52.381 3.32 0.00 45.94 2.18
619 674 1.065418 GGCCTTACAAGCAGCCTAAGA 60.065 52.381 0.00 0.00 42.34 2.10
620 675 2.618045 GGCCTTACAAGCAGCCTAAGAA 60.618 50.000 0.00 0.00 42.34 2.52
621 676 3.081804 GCCTTACAAGCAGCCTAAGAAA 58.918 45.455 0.00 0.00 0.00 2.52
622 677 3.696548 GCCTTACAAGCAGCCTAAGAAAT 59.303 43.478 0.00 0.00 0.00 2.17
623 678 4.201960 GCCTTACAAGCAGCCTAAGAAATC 60.202 45.833 0.00 0.00 0.00 2.17
624 679 4.943705 CCTTACAAGCAGCCTAAGAAATCA 59.056 41.667 0.00 0.00 0.00 2.57
625 680 5.591877 CCTTACAAGCAGCCTAAGAAATCAT 59.408 40.000 0.00 0.00 0.00 2.45
626 681 6.096001 CCTTACAAGCAGCCTAAGAAATCATT 59.904 38.462 0.00 0.00 0.00 2.57
627 682 5.573337 ACAAGCAGCCTAAGAAATCATTC 57.427 39.130 0.00 0.00 35.70 2.67
628 683 4.095483 ACAAGCAGCCTAAGAAATCATTCG 59.905 41.667 0.00 0.00 40.63 3.34
629 684 3.209410 AGCAGCCTAAGAAATCATTCGG 58.791 45.455 0.00 0.00 40.63 4.30
630 685 2.945668 GCAGCCTAAGAAATCATTCGGT 59.054 45.455 0.00 0.00 40.63 4.69
631 686 3.378427 GCAGCCTAAGAAATCATTCGGTT 59.622 43.478 0.00 0.00 40.63 4.44
632 687 4.142381 GCAGCCTAAGAAATCATTCGGTTT 60.142 41.667 0.00 0.00 40.63 3.27
633 688 5.065988 GCAGCCTAAGAAATCATTCGGTTTA 59.934 40.000 0.00 0.00 40.63 2.01
634 689 6.238759 GCAGCCTAAGAAATCATTCGGTTTAT 60.239 38.462 0.00 0.00 40.63 1.40
635 690 7.682021 GCAGCCTAAGAAATCATTCGGTTTATT 60.682 37.037 0.00 0.00 40.63 1.40
636 691 8.190784 CAGCCTAAGAAATCATTCGGTTTATTT 58.809 33.333 0.00 0.00 40.63 1.40
637 692 8.190784 AGCCTAAGAAATCATTCGGTTTATTTG 58.809 33.333 0.00 0.00 40.63 2.32
638 693 7.973944 GCCTAAGAAATCATTCGGTTTATTTGT 59.026 33.333 0.00 0.00 40.63 2.83
641 696 8.911247 AAGAAATCATTCGGTTTATTTGTAGC 57.089 30.769 0.00 0.00 40.63 3.58
642 697 7.186804 AGAAATCATTCGGTTTATTTGTAGCG 58.813 34.615 0.00 0.00 40.63 4.26
643 698 4.868450 TCATTCGGTTTATTTGTAGCGG 57.132 40.909 0.00 0.00 0.00 5.52
644 699 3.064271 TCATTCGGTTTATTTGTAGCGGC 59.936 43.478 0.00 0.00 0.00 6.53
645 700 1.000884 TCGGTTTATTTGTAGCGGCG 58.999 50.000 0.51 0.51 0.00 6.46
646 701 0.027063 CGGTTTATTTGTAGCGGCGG 59.973 55.000 9.78 0.00 0.00 6.13
647 702 0.248336 GGTTTATTTGTAGCGGCGGC 60.248 55.000 9.78 8.43 40.37 6.53
648 703 0.248336 GTTTATTTGTAGCGGCGGCC 60.248 55.000 13.24 9.54 41.24 6.13
649 704 0.677098 TTTATTTGTAGCGGCGGCCA 60.677 50.000 20.71 1.61 41.24 5.36
650 705 1.370587 TTATTTGTAGCGGCGGCCAC 61.371 55.000 20.71 9.82 41.24 5.01
660 715 2.617274 GGCGGCCACTTTGTGAGTC 61.617 63.158 15.62 0.00 36.10 3.36
695 750 2.733858 GCTTTGTGCGAAGGTGTCAAAA 60.734 45.455 0.00 0.00 0.00 2.44
697 752 3.347958 TTGTGCGAAGGTGTCAAAATC 57.652 42.857 0.00 0.00 0.00 2.17
700 755 1.798223 TGCGAAGGTGTCAAAATCGAG 59.202 47.619 6.60 0.00 35.65 4.04
834 908 2.284699 CCTCCACGGGTTCCTCCT 60.285 66.667 0.00 0.00 36.25 3.69
954 1031 2.612251 CTCCTCCCTCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
981 1059 1.972640 CGCGATCGATGATACAGTGAC 59.027 52.381 21.57 0.00 38.10 3.67
1087 1174 0.797579 TTCCTGGTACCTCCCTCCTT 59.202 55.000 14.36 0.00 34.77 3.36
1097 1184 2.191400 CCTCCCTCCTTCTCATCACAA 58.809 52.381 0.00 0.00 0.00 3.33
1098 1185 2.573462 CCTCCCTCCTTCTCATCACAAA 59.427 50.000 0.00 0.00 0.00 2.83
1102 1189 2.744202 CCTCCTTCTCATCACAAAACCG 59.256 50.000 0.00 0.00 0.00 4.44
1110 1197 4.213270 TCTCATCACAAAACCGTGTTGATC 59.787 41.667 8.50 0.00 42.03 2.92
1119 1215 0.650512 CCGTGTTGATCGATTTCCCG 59.349 55.000 0.00 0.00 0.00 5.14
1122 1218 1.323534 GTGTTGATCGATTTCCCGTCG 59.676 52.381 0.00 0.00 40.30 5.12
1135 1328 2.786495 CCGTCGTCCCATCTCCCTG 61.786 68.421 0.00 0.00 0.00 4.45
1137 1330 3.147595 TCGTCCCATCTCCCTGCG 61.148 66.667 0.00 0.00 0.00 5.18
1138 1331 3.461773 CGTCCCATCTCCCTGCGT 61.462 66.667 0.00 0.00 0.00 5.24
1145 1338 1.153549 ATCTCCCTGCGTCGCTTTC 60.154 57.895 19.50 0.00 0.00 2.62
1206 1413 1.626321 TGTTCCTTGGCGGTAAGATCA 59.374 47.619 0.00 0.00 0.00 2.92
1207 1414 2.238646 TGTTCCTTGGCGGTAAGATCAT 59.761 45.455 0.00 0.00 0.00 2.45
1211 1418 1.942657 CTTGGCGGTAAGATCATGTGG 59.057 52.381 0.00 0.00 0.00 4.17
1215 1422 1.871080 CGGTAAGATCATGTGGGAGC 58.129 55.000 0.00 0.00 0.00 4.70
1216 1423 1.869754 CGGTAAGATCATGTGGGAGCG 60.870 57.143 0.00 0.00 0.00 5.03
1217 1424 1.221414 GTAAGATCATGTGGGAGCGC 58.779 55.000 0.00 0.00 0.00 5.92
1218 1425 1.123077 TAAGATCATGTGGGAGCGCT 58.877 50.000 11.27 11.27 0.00 5.92
1219 1426 0.463295 AAGATCATGTGGGAGCGCTG 60.463 55.000 18.48 0.00 0.00 5.18
1220 1427 1.890979 GATCATGTGGGAGCGCTGG 60.891 63.158 18.48 0.00 0.00 4.85
1221 1428 4.783621 TCATGTGGGAGCGCTGGC 62.784 66.667 18.48 0.00 40.37 4.85
1265 1472 2.738846 CGAATCTGAGTGAACACCTTGG 59.261 50.000 1.11 0.00 0.00 3.61
1267 1474 2.910688 TCTGAGTGAACACCTTGGAC 57.089 50.000 1.11 0.00 0.00 4.02
1279 1486 3.758554 ACACCTTGGACAAATGATGTAGC 59.241 43.478 0.00 0.00 44.12 3.58
1315 1528 3.559242 GGCGAATGAGAGGAAGATTTCAG 59.441 47.826 0.00 0.00 0.00 3.02
1326 1546 5.574188 AGGAAGATTTCAGTAGCCATTTGT 58.426 37.500 0.00 0.00 0.00 2.83
1327 1547 5.649831 AGGAAGATTTCAGTAGCCATTTGTC 59.350 40.000 0.00 0.00 0.00 3.18
1380 1600 5.389516 GCGAAACAGTACATAACCTTCAGTG 60.390 44.000 0.00 0.00 0.00 3.66
1399 1619 3.010420 GTGGATACCTTTCCTGCACTTC 58.990 50.000 0.00 0.00 36.68 3.01
1426 1646 4.873746 TTGGGAACACAGTTCAAAACAA 57.126 36.364 11.51 7.88 42.67 2.83
1460 1680 9.026121 ACAGAGTACTAGTATGTTGTTGATCTT 57.974 33.333 5.75 0.00 0.00 2.40
1461 1681 9.295214 CAGAGTACTAGTATGTTGTTGATCTTG 57.705 37.037 5.75 0.00 0.00 3.02
1553 1776 2.806237 GTCGAGGTCGGGGACATC 59.194 66.667 0.00 0.64 39.55 3.06
1559 1782 0.252742 AGGTCGGGGACATCTCCTTT 60.253 55.000 0.00 0.00 36.68 3.11
1565 1788 2.224161 CGGGGACATCTCCTTTCATCTC 60.224 54.545 0.00 0.00 36.68 2.75
1580 1813 3.423749 TCATCTCCACAAGGTACGTACA 58.576 45.455 26.02 3.62 35.89 2.90
1583 1816 4.877378 TCTCCACAAGGTACGTACATTT 57.123 40.909 26.02 16.62 35.89 2.32
1584 1817 4.813027 TCTCCACAAGGTACGTACATTTC 58.187 43.478 26.02 9.59 35.89 2.17
1587 1820 4.040706 TCCACAAGGTACGTACATTTCCTT 59.959 41.667 26.02 16.74 38.79 3.36
1591 1824 5.699458 ACAAGGTACGTACATTTCCTTTCTG 59.301 40.000 26.02 14.11 36.52 3.02
1609 1842 8.568794 TCCTTTCTGTATCTCTGTCGTATATTG 58.431 37.037 0.00 0.00 0.00 1.90
1616 1849 4.933330 TCTCTGTCGTATATTGCTCAACC 58.067 43.478 0.00 0.00 0.00 3.77
1621 1854 3.729716 GTCGTATATTGCTCAACCGAGAC 59.270 47.826 0.00 0.00 42.34 3.36
1624 1857 1.990799 TATTGCTCAACCGAGACACG 58.009 50.000 0.00 0.00 42.34 4.49
1669 1910 4.834357 TCCAGTGTCAAATTGTCACATG 57.166 40.909 21.36 16.13 38.55 3.21
1675 1916 5.010314 AGTGTCAAATTGTCACATGATGCTT 59.990 36.000 21.36 0.23 38.55 3.91
1677 1918 6.525628 GTGTCAAATTGTCACATGATGCTTAG 59.474 38.462 16.20 0.00 36.63 2.18
1707 1948 5.779529 AAATTCTATCCATCCACATGCAC 57.220 39.130 0.00 0.00 0.00 4.57
1712 1953 5.798132 TCTATCCATCCACATGCACTAATC 58.202 41.667 0.00 0.00 0.00 1.75
1714 1955 4.233632 TCCATCCACATGCACTAATCAA 57.766 40.909 0.00 0.00 0.00 2.57
1742 1983 7.752638 TCCTCCATGAATGATTATGACTTGAT 58.247 34.615 0.00 0.00 0.00 2.57
1743 1984 8.222637 TCCTCCATGAATGATTATGACTTGATT 58.777 33.333 0.00 0.00 0.00 2.57
1744 1985 8.857098 CCTCCATGAATGATTATGACTTGATTT 58.143 33.333 0.00 0.00 0.00 2.17
1749 1990 8.706492 TGAATGATTATGACTTGATTTTTGGC 57.294 30.769 0.00 0.00 0.00 4.52
1750 1991 8.312564 TGAATGATTATGACTTGATTTTTGGCA 58.687 29.630 0.00 0.00 0.00 4.92
1751 1992 9.153721 GAATGATTATGACTTGATTTTTGGCAA 57.846 29.630 0.00 0.00 0.00 4.52
1752 1993 9.504708 AATGATTATGACTTGATTTTTGGCAAA 57.495 25.926 8.93 8.93 0.00 3.68
1753 1994 8.899427 TGATTATGACTTGATTTTTGGCAAAA 57.101 26.923 20.81 20.81 36.30 2.44
1754 1995 8.991026 TGATTATGACTTGATTTTTGGCAAAAG 58.009 29.630 23.03 14.82 35.30 2.27
1755 1996 9.206870 GATTATGACTTGATTTTTGGCAAAAGA 57.793 29.630 23.03 15.35 35.30 2.52
1756 1997 8.954950 TTATGACTTGATTTTTGGCAAAAGAA 57.045 26.923 23.03 16.22 35.30 2.52
1757 1998 7.862512 ATGACTTGATTTTTGGCAAAAGAAA 57.137 28.000 23.03 17.18 35.30 2.52
1758 1999 7.678947 TGACTTGATTTTTGGCAAAAGAAAA 57.321 28.000 23.03 16.89 35.30 2.29
1759 2000 8.103948 TGACTTGATTTTTGGCAAAAGAAAAA 57.896 26.923 23.03 15.44 35.30 1.94
2058 2349 1.548809 CGAGCTCATCCCCCAGATCTA 60.549 57.143 15.40 0.00 30.59 1.98
2119 2410 4.195334 GGTGCCGGGATGCAGGAT 62.195 66.667 7.77 0.00 43.02 3.24
2265 2563 0.393077 CCTCAACTCTGTTGGACGGT 59.607 55.000 10.05 0.00 0.00 4.83
2305 2604 0.108585 AACCTTCTTGAAGGCGCTGA 59.891 50.000 24.58 0.00 43.80 4.26
2368 2669 1.672854 CGGAGGGCGTGTTCATCCTA 61.673 60.000 0.00 0.00 0.00 2.94
2707 3037 1.742880 GCATGCAAGAGGTCGCTGA 60.743 57.895 14.21 0.00 0.00 4.26
2859 3200 0.402504 TTGTAATCCTGGCCGGTTGT 59.597 50.000 11.58 0.00 0.00 3.32
2889 3230 0.251787 AATTCAAAGCCGGGCTCCTT 60.252 50.000 24.08 11.39 38.25 3.36
2903 3244 1.609072 GCTCCTTTGAAGCCTTCGTTT 59.391 47.619 0.00 0.00 0.00 3.60
2938 3279 4.137116 TGCTACTCACAACTGAAACTGT 57.863 40.909 0.00 0.00 0.00 3.55
2939 3280 4.119862 TGCTACTCACAACTGAAACTGTC 58.880 43.478 0.00 0.00 0.00 3.51
3027 3376 3.069289 TCTACTGACAACATGCAGCAAG 58.931 45.455 0.00 0.00 35.57 4.01
3028 3377 1.971481 ACTGACAACATGCAGCAAGA 58.029 45.000 4.23 0.00 35.57 3.02
3043 3392 3.937706 CAGCAAGATAACTTCCCTCTGTG 59.062 47.826 0.00 0.00 33.70 3.66
3506 3855 1.139058 GCCCATGGTCGAGAACTACAT 59.861 52.381 11.73 0.00 0.00 2.29
3958 4307 4.697756 CCGGCGAGCAGGTGGAAA 62.698 66.667 9.30 0.00 0.00 3.13
4230 4579 2.562912 CAGCAAATCGTGGCGCTT 59.437 55.556 7.64 0.00 30.72 4.68
4309 4658 0.818040 CAAGGTAGGTAATGGCCGGC 60.818 60.000 21.18 21.18 0.00 6.13
4325 4674 3.660111 GCGGCGGCCATGGATTAC 61.660 66.667 18.40 0.36 0.00 1.89
4344 4693 6.372659 GGATTACTGAATGTTCTTGAGCTTGA 59.627 38.462 0.00 0.00 0.00 3.02
4510 4859 0.250467 TGGTGCAGGTGCTCTTCTTC 60.250 55.000 3.18 0.00 42.66 2.87
4644 4996 2.579201 CGAGGTGGACTTCGGCAT 59.421 61.111 3.52 0.00 41.03 4.40
4819 5171 4.416738 AAGCCCAAGGGAGCGCTC 62.417 66.667 29.38 29.38 37.50 5.03
4989 5344 6.314018 GTCGCATGTGATTTTCAGATTGTAA 58.686 36.000 12.94 0.00 26.66 2.41
5003 5358 9.515226 TTTCAGATTGTAAAATAGGTAAGCACT 57.485 29.630 0.00 0.00 0.00 4.40
5019 5374 1.148310 CACTTAGCACACTGGTTCCG 58.852 55.000 0.00 0.00 0.00 4.30
5024 5379 2.335316 AGCACACTGGTTCCGTTTTA 57.665 45.000 0.00 0.00 0.00 1.52
5026 5381 3.219281 AGCACACTGGTTCCGTTTTATT 58.781 40.909 0.00 0.00 0.00 1.40
5034 5389 1.131693 GTTCCGTTTTATTCCCGCTGG 59.868 52.381 0.00 0.00 0.00 4.85
5182 5563 5.404968 CAGCTAGCTTTGATAATTCTCCTCG 59.595 44.000 16.46 0.00 0.00 4.63
5293 5683 5.254339 GGGACCAAAGATGATCAAACATC 57.746 43.478 0.00 0.00 44.65 3.06
5311 5701 3.569701 ACATCCGATGTTCTTGCAAAGTT 59.430 39.130 8.28 0.00 41.63 2.66
5319 5709 3.132646 TGTTCTTGCAAAGTTTCAGCCAT 59.867 39.130 0.00 0.00 46.34 4.40
5362 5752 7.690256 ACCTCACCTAAAGAAATAACATCAGT 58.310 34.615 0.00 0.00 0.00 3.41
5399 5789 4.567959 GTGCACTTTTGAGCAGTGATTTTT 59.432 37.500 10.32 0.00 46.01 1.94
5466 5856 7.127917 ACTTTGCAAGAACGTCAAAATTTTT 57.872 28.000 0.00 0.00 30.47 1.94
5473 5863 8.487176 GCAAGAACGTCAAAATTTTTATCATGT 58.513 29.630 0.00 0.00 0.00 3.21
5493 5883 4.230455 TGTTTGATCCCCCAAAGTTTCAT 58.770 39.130 0.00 0.00 36.78 2.57
5574 5967 3.011708 AGGGGCTGTCATACATTTTCCTT 59.988 43.478 0.00 0.00 0.00 3.36
5600 5993 7.463961 TCCTAAATAGTCATATCGTTCTCCC 57.536 40.000 0.00 0.00 0.00 4.30
5636 6029 8.410912 GTTAAATTTACAGGTTCCAAGTTGAGT 58.589 33.333 3.87 0.00 0.00 3.41
5657 6050 7.921787 TGAGTAATTGCACGAAGAGTTAAAAA 58.078 30.769 0.00 0.00 0.00 1.94
5756 6149 3.319122 ACTTTCACCCTGCATTTTCTGTC 59.681 43.478 0.00 0.00 0.00 3.51
5762 6155 1.808945 CCTGCATTTTCTGTCGAAGCT 59.191 47.619 0.00 0.00 0.00 3.74
5817 6213 2.675889 GCCCCTTGTGCAAAATGATCTG 60.676 50.000 0.00 0.00 0.00 2.90
5828 6224 4.741342 CAAAATGATCTGCTCCCTGTTTC 58.259 43.478 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 217 2.559840 GCTGACGAGGTCGACGAA 59.440 61.111 9.92 0.00 43.02 3.85
187 218 3.785499 CGCTGACGAGGTCGACGA 61.785 66.667 9.92 0.00 43.93 4.20
267 322 2.130073 AAAAAGCTTCCCGTGCGCTC 62.130 55.000 9.73 3.51 32.70 5.03
268 323 2.193536 AAAAAGCTTCCCGTGCGCT 61.194 52.632 9.73 0.00 35.09 5.92
269 324 2.335011 AAAAAGCTTCCCGTGCGC 59.665 55.556 0.00 0.00 35.28 6.09
299 354 9.875708 AGGCCCAGTTTCATAATTAACATATAA 57.124 29.630 0.00 0.00 0.00 0.98
300 355 9.875708 AAGGCCCAGTTTCATAATTAACATATA 57.124 29.630 0.00 0.00 0.00 0.86
301 356 8.782137 AAGGCCCAGTTTCATAATTAACATAT 57.218 30.769 0.00 0.00 0.00 1.78
302 357 8.602472 AAAGGCCCAGTTTCATAATTAACATA 57.398 30.769 0.00 0.00 0.00 2.29
303 358 7.494922 AAAGGCCCAGTTTCATAATTAACAT 57.505 32.000 0.00 0.00 0.00 2.71
304 359 6.926630 AAAGGCCCAGTTTCATAATTAACA 57.073 33.333 0.00 0.00 0.00 2.41
305 360 9.366216 CTTAAAAGGCCCAGTTTCATAATTAAC 57.634 33.333 0.00 0.00 0.00 2.01
306 361 9.095700 ACTTAAAAGGCCCAGTTTCATAATTAA 57.904 29.630 0.00 0.00 0.00 1.40
307 362 8.527810 CACTTAAAAGGCCCAGTTTCATAATTA 58.472 33.333 0.00 0.00 0.00 1.40
308 363 7.386059 CACTTAAAAGGCCCAGTTTCATAATT 58.614 34.615 0.00 0.00 0.00 1.40
309 364 6.070824 CCACTTAAAAGGCCCAGTTTCATAAT 60.071 38.462 0.00 0.00 0.00 1.28
310 365 5.245075 CCACTTAAAAGGCCCAGTTTCATAA 59.755 40.000 0.00 0.00 0.00 1.90
311 366 4.770010 CCACTTAAAAGGCCCAGTTTCATA 59.230 41.667 0.00 0.00 0.00 2.15
312 367 3.578282 CCACTTAAAAGGCCCAGTTTCAT 59.422 43.478 0.00 0.00 0.00 2.57
313 368 2.962421 CCACTTAAAAGGCCCAGTTTCA 59.038 45.455 0.00 0.00 0.00 2.69
314 369 2.288825 GCCACTTAAAAGGCCCAGTTTC 60.289 50.000 0.00 0.00 45.18 2.78
315 370 1.691976 GCCACTTAAAAGGCCCAGTTT 59.308 47.619 0.00 0.00 45.18 2.66
316 371 1.338107 GCCACTTAAAAGGCCCAGTT 58.662 50.000 0.00 0.00 45.18 3.16
317 372 3.051617 GCCACTTAAAAGGCCCAGT 57.948 52.632 0.00 0.00 45.18 4.00
323 378 1.611519 TTCCACGGCCACTTAAAAGG 58.388 50.000 2.24 0.00 0.00 3.11
324 379 3.934457 ATTTCCACGGCCACTTAAAAG 57.066 42.857 2.24 0.00 0.00 2.27
325 380 3.243907 CCAATTTCCACGGCCACTTAAAA 60.244 43.478 2.24 0.00 0.00 1.52
326 381 2.297597 CCAATTTCCACGGCCACTTAAA 59.702 45.455 2.24 0.00 0.00 1.52
327 382 1.889829 CCAATTTCCACGGCCACTTAA 59.110 47.619 2.24 0.00 0.00 1.85
328 383 1.540267 CCAATTTCCACGGCCACTTA 58.460 50.000 2.24 0.00 0.00 2.24
329 384 1.184970 CCCAATTTCCACGGCCACTT 61.185 55.000 2.24 0.00 0.00 3.16
330 385 1.606313 CCCAATTTCCACGGCCACT 60.606 57.895 2.24 0.00 0.00 4.00
331 386 2.969827 CCCAATTTCCACGGCCAC 59.030 61.111 2.24 0.00 0.00 5.01
332 387 2.994417 GCCCAATTTCCACGGCCA 60.994 61.111 2.24 0.00 35.23 5.36
334 389 4.128388 CGGCCCAATTTCCACGGC 62.128 66.667 0.00 0.00 40.85 5.68
335 390 1.811645 AAACGGCCCAATTTCCACGG 61.812 55.000 0.00 0.00 0.00 4.94
336 391 0.032815 AAAACGGCCCAATTTCCACG 59.967 50.000 0.00 0.00 0.00 4.94
337 392 1.202592 ACAAAACGGCCCAATTTCCAC 60.203 47.619 0.00 0.00 0.00 4.02
338 393 1.123928 ACAAAACGGCCCAATTTCCA 58.876 45.000 0.00 0.00 0.00 3.53
339 394 1.069358 TCACAAAACGGCCCAATTTCC 59.931 47.619 0.00 0.00 0.00 3.13
340 395 2.131972 GTCACAAAACGGCCCAATTTC 58.868 47.619 0.00 0.00 0.00 2.17
341 396 1.202592 GGTCACAAAACGGCCCAATTT 60.203 47.619 0.00 0.00 0.00 1.82
342 397 0.391228 GGTCACAAAACGGCCCAATT 59.609 50.000 0.00 0.00 0.00 2.32
343 398 1.801309 CGGTCACAAAACGGCCCAAT 61.801 55.000 0.00 0.00 0.00 3.16
344 399 2.482333 CGGTCACAAAACGGCCCAA 61.482 57.895 0.00 0.00 0.00 4.12
345 400 2.902846 CGGTCACAAAACGGCCCA 60.903 61.111 0.00 0.00 0.00 5.36
346 401 2.592287 TCGGTCACAAAACGGCCC 60.592 61.111 0.00 0.00 0.00 5.80
347 402 2.635338 GTCGGTCACAAAACGGCC 59.365 61.111 0.00 0.00 0.00 6.13
348 403 2.635338 GGTCGGTCACAAAACGGC 59.365 61.111 0.00 0.00 0.00 5.68
349 404 2.255881 GGGGTCGGTCACAAAACGG 61.256 63.158 0.00 0.00 0.00 4.44
350 405 0.033781 TAGGGGTCGGTCACAAAACG 59.966 55.000 0.00 0.00 0.00 3.60
351 406 2.484742 ATAGGGGTCGGTCACAAAAC 57.515 50.000 0.00 0.00 0.00 2.43
352 407 5.367352 ACATATATAGGGGTCGGTCACAAAA 59.633 40.000 0.00 0.00 0.00 2.44
353 408 4.903049 ACATATATAGGGGTCGGTCACAAA 59.097 41.667 0.00 0.00 0.00 2.83
354 409 4.485875 ACATATATAGGGGTCGGTCACAA 58.514 43.478 0.00 0.00 0.00 3.33
355 410 4.122337 ACATATATAGGGGTCGGTCACA 57.878 45.455 0.00 0.00 0.00 3.58
356 411 5.479124 AAACATATATAGGGGTCGGTCAC 57.521 43.478 0.00 0.00 0.00 3.67
357 412 7.236019 ACATAAAACATATATAGGGGTCGGTCA 59.764 37.037 0.00 0.00 0.00 4.02
358 413 7.618137 ACATAAAACATATATAGGGGTCGGTC 58.382 38.462 0.00 0.00 0.00 4.79
359 414 7.563724 ACATAAAACATATATAGGGGTCGGT 57.436 36.000 0.00 0.00 0.00 4.69
360 415 8.857694 AAACATAAAACATATATAGGGGTCGG 57.142 34.615 0.00 0.00 0.00 4.79
433 488 8.400186 CCGGGTAGACGTGAATAAAAATAAAAT 58.600 33.333 0.00 0.00 0.00 1.82
434 489 7.605691 TCCGGGTAGACGTGAATAAAAATAAAA 59.394 33.333 0.00 0.00 0.00 1.52
435 490 7.064490 GTCCGGGTAGACGTGAATAAAAATAAA 59.936 37.037 0.00 0.00 0.00 1.40
436 491 6.534793 GTCCGGGTAGACGTGAATAAAAATAA 59.465 38.462 0.00 0.00 0.00 1.40
437 492 6.042143 GTCCGGGTAGACGTGAATAAAAATA 58.958 40.000 0.00 0.00 0.00 1.40
438 493 4.872124 GTCCGGGTAGACGTGAATAAAAAT 59.128 41.667 0.00 0.00 0.00 1.82
439 494 4.244862 GTCCGGGTAGACGTGAATAAAAA 58.755 43.478 0.00 0.00 0.00 1.94
440 495 3.257873 TGTCCGGGTAGACGTGAATAAAA 59.742 43.478 0.00 0.00 39.77 1.52
441 496 2.824936 TGTCCGGGTAGACGTGAATAAA 59.175 45.455 0.00 0.00 39.77 1.40
442 497 2.445427 TGTCCGGGTAGACGTGAATAA 58.555 47.619 0.00 0.00 39.77 1.40
443 498 2.127271 TGTCCGGGTAGACGTGAATA 57.873 50.000 0.00 0.00 39.77 1.75
444 499 1.481871 ATGTCCGGGTAGACGTGAAT 58.518 50.000 0.00 0.00 39.77 2.57
445 500 2.965805 ATGTCCGGGTAGACGTGAA 58.034 52.632 0.00 0.00 39.77 3.18
446 501 4.749323 ATGTCCGGGTAGACGTGA 57.251 55.556 0.00 0.00 39.77 4.35
447 502 4.806571 CATGTCCGGGTAGACGTG 57.193 61.111 0.00 0.00 44.82 4.49
448 503 1.481871 AATCATGTCCGGGTAGACGT 58.518 50.000 0.00 0.00 39.77 4.34
449 504 2.159156 TCAAATCATGTCCGGGTAGACG 60.159 50.000 0.00 0.00 39.77 4.18
450 505 3.536956 TCAAATCATGTCCGGGTAGAC 57.463 47.619 0.00 0.00 37.28 2.59
451 506 3.517901 ACTTCAAATCATGTCCGGGTAGA 59.482 43.478 0.00 0.00 0.00 2.59
452 507 3.623060 CACTTCAAATCATGTCCGGGTAG 59.377 47.826 0.00 0.00 0.00 3.18
453 508 3.605634 CACTTCAAATCATGTCCGGGTA 58.394 45.455 0.00 0.00 0.00 3.69
454 509 2.436417 CACTTCAAATCATGTCCGGGT 58.564 47.619 0.00 0.00 0.00 5.28
455 510 1.133025 GCACTTCAAATCATGTCCGGG 59.867 52.381 0.00 0.00 0.00 5.73
456 511 1.202065 CGCACTTCAAATCATGTCCGG 60.202 52.381 0.00 0.00 0.00 5.14
457 512 1.202065 CCGCACTTCAAATCATGTCCG 60.202 52.381 0.00 0.00 0.00 4.79
458 513 1.468054 GCCGCACTTCAAATCATGTCC 60.468 52.381 0.00 0.00 0.00 4.02
459 514 1.468054 GGCCGCACTTCAAATCATGTC 60.468 52.381 0.00 0.00 0.00 3.06
460 515 0.527565 GGCCGCACTTCAAATCATGT 59.472 50.000 0.00 0.00 0.00 3.21
461 516 0.523968 CGGCCGCACTTCAAATCATG 60.524 55.000 14.67 0.00 0.00 3.07
462 517 1.802636 CGGCCGCACTTCAAATCAT 59.197 52.632 14.67 0.00 0.00 2.45
463 518 2.976840 GCGGCCGCACTTCAAATCA 61.977 57.895 43.55 0.00 41.49 2.57
464 519 2.202479 GCGGCCGCACTTCAAATC 60.202 61.111 43.55 11.09 41.49 2.17
489 544 3.788766 GATGGGTCGTGTGTGCGC 61.789 66.667 0.00 0.00 0.00 6.09
490 545 2.048222 AGATGGGTCGTGTGTGCG 60.048 61.111 0.00 0.00 0.00 5.34
491 546 1.005037 TCAGATGGGTCGTGTGTGC 60.005 57.895 0.00 0.00 0.00 4.57
492 547 0.033366 TGTCAGATGGGTCGTGTGTG 59.967 55.000 0.00 0.00 0.00 3.82
493 548 0.756294 TTGTCAGATGGGTCGTGTGT 59.244 50.000 0.00 0.00 0.00 3.72
494 549 1.800586 CTTTGTCAGATGGGTCGTGTG 59.199 52.381 0.00 0.00 0.00 3.82
495 550 1.878102 GCTTTGTCAGATGGGTCGTGT 60.878 52.381 0.00 0.00 0.00 4.49
496 551 0.798776 GCTTTGTCAGATGGGTCGTG 59.201 55.000 0.00 0.00 0.00 4.35
497 552 0.321653 GGCTTTGTCAGATGGGTCGT 60.322 55.000 0.00 0.00 0.00 4.34
498 553 1.361668 CGGCTTTGTCAGATGGGTCG 61.362 60.000 0.00 0.00 0.00 4.79
499 554 1.026718 CCGGCTTTGTCAGATGGGTC 61.027 60.000 0.00 0.00 0.00 4.46
500 555 1.002134 CCGGCTTTGTCAGATGGGT 60.002 57.895 0.00 0.00 0.00 4.51
501 556 1.026718 GTCCGGCTTTGTCAGATGGG 61.027 60.000 0.00 0.00 0.00 4.00
502 557 0.321564 TGTCCGGCTTTGTCAGATGG 60.322 55.000 0.00 0.00 0.00 3.51
503 558 0.798776 GTGTCCGGCTTTGTCAGATG 59.201 55.000 0.00 0.00 0.00 2.90
504 559 0.670546 CGTGTCCGGCTTTGTCAGAT 60.671 55.000 0.00 0.00 0.00 2.90
505 560 1.300620 CGTGTCCGGCTTTGTCAGA 60.301 57.895 0.00 0.00 0.00 3.27
506 561 3.244105 CGTGTCCGGCTTTGTCAG 58.756 61.111 0.00 0.00 0.00 3.51
532 587 4.794648 TCCTTTGGGGCGCCGATG 62.795 66.667 22.54 15.02 34.39 3.84
533 588 4.041762 TTCCTTTGGGGCGCCGAT 62.042 61.111 22.54 0.00 34.39 4.18
536 591 2.034048 TTTTGTTCCTTTGGGGCGCC 62.034 55.000 21.18 21.18 34.39 6.53
537 592 0.034756 ATTTTGTTCCTTTGGGGCGC 59.965 50.000 0.00 0.00 34.39 6.53
538 593 1.337728 GGATTTTGTTCCTTTGGGGCG 60.338 52.381 0.00 0.00 32.68 6.13
539 594 1.337728 CGGATTTTGTTCCTTTGGGGC 60.338 52.381 0.00 0.00 33.30 5.80
540 595 1.275010 CCGGATTTTGTTCCTTTGGGG 59.725 52.381 0.00 0.00 33.30 4.96
541 596 1.337728 GCCGGATTTTGTTCCTTTGGG 60.338 52.381 5.05 0.00 33.30 4.12
542 597 1.337728 GGCCGGATTTTGTTCCTTTGG 60.338 52.381 5.05 0.00 33.30 3.28
543 598 1.342819 TGGCCGGATTTTGTTCCTTTG 59.657 47.619 5.05 0.00 33.30 2.77
544 599 1.710816 TGGCCGGATTTTGTTCCTTT 58.289 45.000 5.05 0.00 33.30 3.11
545 600 1.710816 TTGGCCGGATTTTGTTCCTT 58.289 45.000 5.05 0.00 33.30 3.36
546 601 1.937191 ATTGGCCGGATTTTGTTCCT 58.063 45.000 5.05 0.00 33.30 3.36
547 602 2.616960 GAATTGGCCGGATTTTGTTCC 58.383 47.619 5.05 0.00 0.00 3.62
548 603 2.258755 CGAATTGGCCGGATTTTGTTC 58.741 47.619 5.05 0.00 0.00 3.18
549 604 2.362169 CGAATTGGCCGGATTTTGTT 57.638 45.000 5.05 0.00 0.00 2.83
558 613 2.782615 GAACGTCCGAATTGGCCG 59.217 61.111 0.00 0.00 37.80 6.13
559 614 1.571215 AACGAACGTCCGAATTGGCC 61.571 55.000 0.00 0.00 37.80 5.36
560 615 0.236449 AAACGAACGTCCGAATTGGC 59.764 50.000 0.00 0.00 37.80 4.52
561 616 3.423907 CCTTAAACGAACGTCCGAATTGG 60.424 47.826 0.00 0.00 40.09 3.16
562 617 3.184986 ACCTTAAACGAACGTCCGAATTG 59.815 43.478 0.00 0.00 0.00 2.32
563 618 3.392882 ACCTTAAACGAACGTCCGAATT 58.607 40.909 0.00 0.00 0.00 2.17
564 619 2.989166 GACCTTAAACGAACGTCCGAAT 59.011 45.455 0.00 0.00 0.00 3.34
565 620 2.393764 GACCTTAAACGAACGTCCGAA 58.606 47.619 0.00 0.00 0.00 4.30
566 621 1.662876 CGACCTTAAACGAACGTCCGA 60.663 52.381 0.00 0.00 0.00 4.55
567 622 0.704551 CGACCTTAAACGAACGTCCG 59.295 55.000 0.00 0.00 0.00 4.79
568 623 0.436150 GCGACCTTAAACGAACGTCC 59.564 55.000 0.00 0.00 0.00 4.79
569 624 0.090178 CGCGACCTTAAACGAACGTC 59.910 55.000 0.00 0.00 0.00 4.34
570 625 1.879562 GCGCGACCTTAAACGAACGT 61.880 55.000 12.10 0.00 0.00 3.99
571 626 1.225289 GCGCGACCTTAAACGAACG 60.225 57.895 12.10 0.00 0.00 3.95
572 627 1.225289 CGCGCGACCTTAAACGAAC 60.225 57.895 28.94 0.00 0.00 3.95
573 628 2.374226 CCGCGCGACCTTAAACGAA 61.374 57.895 34.63 0.00 0.00 3.85
574 629 2.806198 CCGCGCGACCTTAAACGA 60.806 61.111 34.63 0.00 0.00 3.85
575 630 3.107661 ACCGCGCGACCTTAAACG 61.108 61.111 34.63 13.76 0.00 3.60
576 631 2.472934 CACCGCGCGACCTTAAAC 59.527 61.111 34.63 0.00 0.00 2.01
577 632 2.739287 CCACCGCGCGACCTTAAA 60.739 61.111 34.63 0.00 0.00 1.52
578 633 3.636313 CTCCACCGCGCGACCTTAA 62.636 63.158 34.63 10.36 0.00 1.85
579 634 4.124351 CTCCACCGCGCGACCTTA 62.124 66.667 34.63 11.52 0.00 2.69
587 642 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
588 643 2.038837 GTAAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 0.00 5.68
589 644 0.250553 TTGTAAGGCCAACTCCACCG 60.251 55.000 5.01 0.00 0.00 4.94
590 645 1.534729 CTTGTAAGGCCAACTCCACC 58.465 55.000 5.01 0.00 0.00 4.61
591 646 0.881796 GCTTGTAAGGCCAACTCCAC 59.118 55.000 5.01 0.00 0.00 4.02
592 647 0.476338 TGCTTGTAAGGCCAACTCCA 59.524 50.000 5.01 0.00 0.00 3.86
593 648 1.168714 CTGCTTGTAAGGCCAACTCC 58.831 55.000 5.01 0.00 0.00 3.85
594 649 0.523519 GCTGCTTGTAAGGCCAACTC 59.476 55.000 5.01 0.00 0.00 3.01
595 650 0.895559 GGCTGCTTGTAAGGCCAACT 60.896 55.000 5.01 0.00 43.59 3.16
596 651 0.895559 AGGCTGCTTGTAAGGCCAAC 60.896 55.000 5.01 2.84 46.23 3.77
597 652 0.695924 TAGGCTGCTTGTAAGGCCAA 59.304 50.000 5.01 0.00 46.23 4.52
598 653 0.695924 TTAGGCTGCTTGTAAGGCCA 59.304 50.000 5.01 0.00 46.23 5.36
599 654 1.065418 TCTTAGGCTGCTTGTAAGGCC 60.065 52.381 0.00 0.00 44.38 5.19
600 655 2.403252 TCTTAGGCTGCTTGTAAGGC 57.597 50.000 0.00 0.00 40.39 4.35
601 656 4.943705 TGATTTCTTAGGCTGCTTGTAAGG 59.056 41.667 0.00 0.00 0.00 2.69
602 657 6.690194 ATGATTTCTTAGGCTGCTTGTAAG 57.310 37.500 0.00 5.27 0.00 2.34
603 658 6.183360 CGAATGATTTCTTAGGCTGCTTGTAA 60.183 38.462 0.00 0.00 0.00 2.41
604 659 5.294306 CGAATGATTTCTTAGGCTGCTTGTA 59.706 40.000 0.00 0.00 0.00 2.41
605 660 4.095483 CGAATGATTTCTTAGGCTGCTTGT 59.905 41.667 0.00 0.00 0.00 3.16
606 661 4.497006 CCGAATGATTTCTTAGGCTGCTTG 60.497 45.833 0.00 0.00 0.00 4.01
607 662 3.629398 CCGAATGATTTCTTAGGCTGCTT 59.371 43.478 0.00 0.00 0.00 3.91
608 663 3.209410 CCGAATGATTTCTTAGGCTGCT 58.791 45.455 0.00 0.00 0.00 4.24
609 664 2.945668 ACCGAATGATTTCTTAGGCTGC 59.054 45.455 0.00 0.00 0.00 5.25
610 665 5.567138 AAACCGAATGATTTCTTAGGCTG 57.433 39.130 0.00 0.00 0.00 4.85
611 666 7.881775 AATAAACCGAATGATTTCTTAGGCT 57.118 32.000 0.00 0.00 0.00 4.58
612 667 7.973944 ACAAATAAACCGAATGATTTCTTAGGC 59.026 33.333 0.00 0.00 0.00 3.93
615 670 9.997482 GCTACAAATAAACCGAATGATTTCTTA 57.003 29.630 0.00 0.00 0.00 2.10
616 671 7.696453 CGCTACAAATAAACCGAATGATTTCTT 59.304 33.333 0.00 0.00 0.00 2.52
617 672 7.186804 CGCTACAAATAAACCGAATGATTTCT 58.813 34.615 0.00 0.00 0.00 2.52
618 673 6.413818 CCGCTACAAATAAACCGAATGATTTC 59.586 38.462 0.00 0.00 0.00 2.17
619 674 6.262601 CCGCTACAAATAAACCGAATGATTT 58.737 36.000 0.00 0.00 0.00 2.17
620 675 5.732247 GCCGCTACAAATAAACCGAATGATT 60.732 40.000 0.00 0.00 0.00 2.57
621 676 4.261031 GCCGCTACAAATAAACCGAATGAT 60.261 41.667 0.00 0.00 0.00 2.45
622 677 3.064271 GCCGCTACAAATAAACCGAATGA 59.936 43.478 0.00 0.00 0.00 2.57
623 678 3.359654 GCCGCTACAAATAAACCGAATG 58.640 45.455 0.00 0.00 0.00 2.67
624 679 2.031191 CGCCGCTACAAATAAACCGAAT 59.969 45.455 0.00 0.00 0.00 3.34
625 680 1.394227 CGCCGCTACAAATAAACCGAA 59.606 47.619 0.00 0.00 0.00 4.30
626 681 1.000884 CGCCGCTACAAATAAACCGA 58.999 50.000 0.00 0.00 0.00 4.69
627 682 0.027063 CCGCCGCTACAAATAAACCG 59.973 55.000 0.00 0.00 0.00 4.44
628 683 0.248336 GCCGCCGCTACAAATAAACC 60.248 55.000 0.00 0.00 0.00 3.27
629 684 0.248336 GGCCGCCGCTACAAATAAAC 60.248 55.000 0.00 0.00 34.44 2.01
630 685 0.677098 TGGCCGCCGCTACAAATAAA 60.677 50.000 4.58 0.00 34.44 1.40
631 686 1.078356 TGGCCGCCGCTACAAATAA 60.078 52.632 4.58 0.00 34.44 1.40
632 687 1.816259 GTGGCCGCCGCTACAAATA 60.816 57.895 16.05 0.00 45.31 1.40
633 688 3.131478 GTGGCCGCCGCTACAAAT 61.131 61.111 16.05 0.00 45.31 2.32
637 692 3.799755 CAAAGTGGCCGCCGCTAC 61.800 66.667 25.62 8.12 44.35 3.58
638 693 4.323477 ACAAAGTGGCCGCCGCTA 62.323 61.111 25.62 0.00 44.35 4.26
641 696 3.726517 CTCACAAAGTGGCCGCCG 61.727 66.667 14.07 4.38 33.87 6.46
642 697 2.594592 ACTCACAAAGTGGCCGCC 60.595 61.111 14.07 1.04 36.65 6.13
643 698 2.946762 GACTCACAAAGTGGCCGC 59.053 61.111 8.71 8.71 38.74 6.53
644 699 1.594293 ACGACTCACAAAGTGGCCG 60.594 57.895 0.00 2.13 38.74 6.13
645 700 0.814010 ACACGACTCACAAAGTGGCC 60.814 55.000 0.00 0.00 38.74 5.36
646 701 0.582005 GACACGACTCACAAAGTGGC 59.418 55.000 0.00 0.00 38.74 5.01
647 702 1.860950 CAGACACGACTCACAAAGTGG 59.139 52.381 0.00 0.00 38.74 4.00
648 703 2.809446 TCAGACACGACTCACAAAGTG 58.191 47.619 0.00 0.00 38.74 3.16
649 704 3.735237 ATCAGACACGACTCACAAAGT 57.265 42.857 0.00 0.00 42.42 2.66
650 705 3.185188 CCAATCAGACACGACTCACAAAG 59.815 47.826 0.00 0.00 0.00 2.77
660 715 0.453282 CAAAGCGCCAATCAGACACG 60.453 55.000 2.29 0.00 0.00 4.49
695 750 2.898920 TTCGCCCCGTAGACCTCGAT 62.899 60.000 0.00 0.00 0.00 3.59
697 752 3.122250 CTTCGCCCCGTAGACCTCG 62.122 68.421 0.00 0.00 0.00 4.63
700 755 3.718210 CTGCTTCGCCCCGTAGACC 62.718 68.421 0.00 0.00 0.00 3.85
720 780 1.153349 GCGCAAACCCAAACCCAAA 60.153 52.632 0.30 0.00 0.00 3.28
937 1014 2.612251 GAGGGAGGGAGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
939 1016 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
940 1017 4.179599 GGGGAGGGAGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
942 1019 4.825679 GTGGGGAGGGAGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
981 1059 2.110967 CAATCAGCCAGTCAGCGGG 61.111 63.158 0.00 0.00 38.01 6.13
1087 1174 3.536570 TCAACACGGTTTTGTGATGAGA 58.463 40.909 6.89 0.00 43.81 3.27
1097 1184 2.486592 GGGAAATCGATCAACACGGTTT 59.513 45.455 0.00 0.00 44.74 3.27
1098 1185 2.081462 GGGAAATCGATCAACACGGTT 58.919 47.619 0.00 0.00 35.58 4.44
1102 1189 1.323534 CGACGGGAAATCGATCAACAC 59.676 52.381 0.00 0.00 42.25 3.32
1110 1197 0.874607 GATGGGACGACGGGAAATCG 60.875 60.000 0.00 0.00 45.17 3.34
1119 1215 2.501610 GCAGGGAGATGGGACGAC 59.498 66.667 0.00 0.00 0.00 4.34
1122 1218 2.501610 GACGCAGGGAGATGGGAC 59.498 66.667 0.00 0.00 36.95 4.46
1135 1328 3.465122 TTCTAAAATGGAAAGCGACGC 57.535 42.857 13.03 13.03 0.00 5.19
1137 1330 6.308041 GTGGATTTTCTAAAATGGAAAGCGAC 59.692 38.462 5.44 0.00 38.64 5.19
1138 1331 6.208599 AGTGGATTTTCTAAAATGGAAAGCGA 59.791 34.615 5.44 0.00 38.64 4.93
1145 1338 4.866486 GCAGCAGTGGATTTTCTAAAATGG 59.134 41.667 5.44 0.00 38.64 3.16
1230 1437 2.311688 GATTCGGTCAGGTGGCGGAT 62.312 60.000 0.00 0.00 0.00 4.18
1265 1472 5.643777 ACCTTGTACTGCTACATCATTTGTC 59.356 40.000 0.00 0.00 39.87 3.18
1267 1474 6.818644 ACTACCTTGTACTGCTACATCATTTG 59.181 38.462 0.00 0.00 32.70 2.32
1279 1486 2.736144 TTCGCCACTACCTTGTACTG 57.264 50.000 0.00 0.00 0.00 2.74
1315 1528 3.895232 TCTCCTGAGACAAATGGCTAC 57.105 47.619 0.00 0.00 30.09 3.58
1326 1546 8.597167 TGAATAATCTGAAAGTTTCTCCTGAGA 58.403 33.333 16.33 10.44 32.82 3.27
1327 1547 8.783833 TGAATAATCTGAAAGTTTCTCCTGAG 57.216 34.615 16.33 5.50 33.76 3.35
1380 1600 3.274288 CAGAAGTGCAGGAAAGGTATCC 58.726 50.000 0.00 0.00 39.96 2.59
1399 1619 2.361757 TGAACTGTGTTCCCAATTGCAG 59.638 45.455 0.00 3.52 0.00 4.41
1409 1629 4.233789 TGCTGTTGTTTTGAACTGTGTTC 58.766 39.130 3.74 3.74 0.00 3.18
1426 1646 7.883391 ACATACTAGTACTCTGTAATGCTGT 57.117 36.000 4.31 3.33 0.00 4.40
1460 1680 1.948834 CAGTGTGATTTGTGAGCCACA 59.051 47.619 4.16 4.16 43.02 4.17
1461 1681 1.335324 GCAGTGTGATTTGTGAGCCAC 60.335 52.381 0.00 0.00 34.56 5.01
1553 1776 3.710209 ACCTTGTGGAGATGAAAGGAG 57.290 47.619 7.28 0.00 41.49 3.69
1559 1782 3.423749 TGTACGTACCTTGTGGAGATGA 58.576 45.455 22.43 0.00 37.04 2.92
1565 1788 3.934068 AGGAAATGTACGTACCTTGTGG 58.066 45.455 22.43 0.00 39.83 4.17
1580 1813 6.287589 ACGACAGAGATACAGAAAGGAAAT 57.712 37.500 0.00 0.00 0.00 2.17
1583 1816 8.568794 CAATATACGACAGAGATACAGAAAGGA 58.431 37.037 0.00 0.00 0.00 3.36
1584 1817 7.327275 GCAATATACGACAGAGATACAGAAAGG 59.673 40.741 0.00 0.00 0.00 3.11
1587 1820 7.228706 TGAGCAATATACGACAGAGATACAGAA 59.771 37.037 0.00 0.00 0.00 3.02
1591 1824 6.583050 GGTTGAGCAATATACGACAGAGATAC 59.417 42.308 0.00 0.00 0.00 2.24
1609 1842 0.729816 GAGACGTGTCTCGGTTGAGC 60.730 60.000 13.75 0.00 45.49 4.26
1669 1910 9.943163 GGATAGAATTTTCAAACTCTAAGCATC 57.057 33.333 0.00 0.00 0.00 3.91
1675 1916 9.396022 GTGGATGGATAGAATTTTCAAACTCTA 57.604 33.333 0.00 0.00 0.00 2.43
1677 1918 8.055279 TGTGGATGGATAGAATTTTCAAACTC 57.945 34.615 0.00 0.00 0.00 3.01
1699 1940 5.125900 TGGAGGATTTTGATTAGTGCATGTG 59.874 40.000 0.00 0.00 0.00 3.21
1712 1953 8.857098 AGTCATAATCATTCATGGAGGATTTTG 58.143 33.333 18.48 19.21 33.11 2.44
1714 1955 8.857098 CAAGTCATAATCATTCATGGAGGATTT 58.143 33.333 18.48 5.00 32.62 2.17
1762 2003 9.442047 GCTTTAGGTAGCATATCAAGTCATAAT 57.558 33.333 0.00 0.00 40.89 1.28
1763 2004 8.428852 TGCTTTAGGTAGCATATCAAGTCATAA 58.571 33.333 0.00 0.00 45.72 1.90
1764 2005 7.962441 TGCTTTAGGTAGCATATCAAGTCATA 58.038 34.615 0.00 0.00 45.72 2.15
1765 2006 6.830912 TGCTTTAGGTAGCATATCAAGTCAT 58.169 36.000 0.00 0.00 45.72 3.06
1766 2007 6.233905 TGCTTTAGGTAGCATATCAAGTCA 57.766 37.500 0.00 0.00 45.72 3.41
1778 2019 1.883084 CGGCGGCTGCTTTAGGTAG 60.883 63.158 18.85 0.00 42.25 3.18
1779 2020 2.185867 CGGCGGCTGCTTTAGGTA 59.814 61.111 18.85 0.00 42.25 3.08
1780 2021 4.778143 CCGGCGGCTGCTTTAGGT 62.778 66.667 15.42 0.00 42.25 3.08
2058 2349 4.742649 TCCTCGACGGAGCAGGCT 62.743 66.667 0.00 0.00 39.06 4.58
2305 2604 3.558608 TCCCATCCTTGTTCCCAAAAT 57.441 42.857 0.00 0.00 0.00 1.82
2368 2669 1.294780 CGAAAGAGGGTGAGCAGCT 59.705 57.895 0.00 0.00 0.00 4.24
2455 2757 0.603975 GAAGCCACAAGAGCGGAACT 60.604 55.000 0.00 0.00 34.64 3.01
2913 3254 7.611770 ACAGTTTCAGTTGTGAGTAGCATATA 58.388 34.615 0.00 0.00 32.98 0.86
2914 3255 6.467677 ACAGTTTCAGTTGTGAGTAGCATAT 58.532 36.000 0.00 0.00 32.98 1.78
2916 3257 4.708177 ACAGTTTCAGTTGTGAGTAGCAT 58.292 39.130 0.00 0.00 32.98 3.79
2938 3279 3.648067 ACAAGTCAGTGAAAGAGATGGGA 59.352 43.478 0.00 0.00 0.00 4.37
2939 3280 4.013267 ACAAGTCAGTGAAAGAGATGGG 57.987 45.455 0.00 0.00 0.00 4.00
3007 3356 3.069289 TCTTGCTGCATGTTGTCAGTAG 58.931 45.455 14.21 0.38 33.09 2.57
3027 3376 4.906618 TGGAAACACAGAGGGAAGTTATC 58.093 43.478 0.00 0.00 33.40 1.75
3028 3377 4.993705 TGGAAACACAGAGGGAAGTTAT 57.006 40.909 0.00 0.00 33.40 1.89
3043 3392 2.604912 AAGGGGAACTGGATGGAAAC 57.395 50.000 0.00 0.00 0.00 2.78
3194 3543 0.460284 ATCGTAGCAGAACTTGGCGG 60.460 55.000 0.00 0.00 34.54 6.13
3195 3544 2.203800 TATCGTAGCAGAACTTGGCG 57.796 50.000 0.00 0.00 34.54 5.69
3431 3780 2.182791 CCAGCGACTCGATGCACT 59.817 61.111 11.24 0.00 42.12 4.40
3506 3855 4.794439 CATCGACGCACCTCGCCA 62.794 66.667 0.00 0.00 43.23 5.69
3804 4153 1.903294 GATCTCCTCCAGCAGCACA 59.097 57.895 0.00 0.00 0.00 4.57
3853 4202 2.504244 CAGGAACCTCGTCGTCGC 60.504 66.667 0.00 0.00 36.96 5.19
3921 4270 4.200283 CGCCTCTCCAGAGCGTCC 62.200 72.222 10.45 0.00 40.75 4.79
3952 4301 4.404654 CAGCGCCGCCTTTTCCAC 62.405 66.667 4.98 0.00 0.00 4.02
4083 4432 2.721167 CGTGATCTCCGGCAAGGGA 61.721 63.158 0.00 0.00 41.52 4.20
4085 4434 2.202932 CCGTGATCTCCGGCAAGG 60.203 66.667 10.71 0.00 38.85 3.61
4122 4471 4.172512 CTGGCCGGCATGAGCTCT 62.173 66.667 30.85 0.00 41.70 4.09
4146 4495 4.421479 CCGTCGACGAGCTTGGCT 62.421 66.667 37.65 0.00 43.88 4.75
4230 4579 3.066190 CGGGCGTAGTCAGGGACA 61.066 66.667 0.00 0.00 34.60 4.02
4309 4658 2.111043 AGTAATCCATGGCCGCCG 59.889 61.111 6.96 0.00 0.00 6.46
4320 4669 7.118971 ACTCAAGCTCAAGAACATTCAGTAATC 59.881 37.037 2.52 0.00 0.00 1.75
4325 4674 5.686159 AACTCAAGCTCAAGAACATTCAG 57.314 39.130 2.52 0.00 0.00 3.02
4344 4693 4.702131 GCCATGACAGAAAGGTATCAAACT 59.298 41.667 0.00 0.00 0.00 2.66
4588 4940 3.787001 CGGGAGCTCCTTGGGGAC 61.787 72.222 31.36 12.50 36.57 4.46
4644 4996 1.833492 TCGTTGTTCTCCGACCCCA 60.833 57.895 0.00 0.00 0.00 4.96
4728 5080 2.835431 CCCTCTGCCGGATCTCGT 60.835 66.667 5.05 0.00 37.11 4.18
4729 5081 2.835431 ACCCTCTGCCGGATCTCG 60.835 66.667 5.05 0.00 38.88 4.04
4887 5239 2.753966 CCGGAGCTTGGCAATCGTG 61.754 63.158 0.00 0.00 0.00 4.35
4888 5240 2.436646 CCGGAGCTTGGCAATCGT 60.437 61.111 0.00 0.00 0.00 3.73
4989 5344 5.643777 CAGTGTGCTAAGTGCTTACCTATTT 59.356 40.000 0.00 0.00 43.37 1.40
4997 5352 2.222027 GAACCAGTGTGCTAAGTGCTT 58.778 47.619 0.00 0.00 43.37 3.91
4998 5353 1.543429 GGAACCAGTGTGCTAAGTGCT 60.543 52.381 0.00 0.00 43.37 4.40
4999 5354 0.875059 GGAACCAGTGTGCTAAGTGC 59.125 55.000 0.00 0.00 43.25 4.40
5000 5355 1.148310 CGGAACCAGTGTGCTAAGTG 58.852 55.000 0.00 0.00 0.00 3.16
5001 5356 0.756903 ACGGAACCAGTGTGCTAAGT 59.243 50.000 0.00 0.00 0.00 2.24
5002 5357 1.878953 AACGGAACCAGTGTGCTAAG 58.121 50.000 0.00 0.00 0.00 2.18
5003 5358 2.335316 AAACGGAACCAGTGTGCTAA 57.665 45.000 0.00 0.00 0.00 3.09
5182 5563 3.477210 AGGTGTTGAAAGTCCTGTCTC 57.523 47.619 0.00 0.00 0.00 3.36
5261 5651 0.608308 CTTTGGTCCCCCGGAGTTTC 60.608 60.000 0.73 0.00 29.39 2.78
5268 5658 0.546122 TGATCATCTTTGGTCCCCCG 59.454 55.000 0.00 0.00 31.48 5.73
5293 5683 3.963665 TGAAACTTTGCAAGAACATCGG 58.036 40.909 0.00 0.00 0.00 4.18
5311 5701 6.353323 TCCTCGAATGTTATTTATGGCTGAA 58.647 36.000 0.00 0.00 0.00 3.02
5362 5752 7.093354 TCAAAAGTGCACATAAACTTTGAACA 58.907 30.769 21.04 1.15 43.92 3.18
5404 5794 2.851045 GAGGAGCCCCCACCAAAA 59.149 61.111 0.00 0.00 37.41 2.44
5466 5856 5.205517 ACTTTGGGGGATCAAACATGATA 57.794 39.130 0.00 0.00 33.62 2.15
5473 5863 5.903198 AAATGAAACTTTGGGGGATCAAA 57.097 34.783 0.00 0.00 35.60 2.69
5474 5864 5.903198 AAAATGAAACTTTGGGGGATCAA 57.097 34.783 0.00 0.00 0.00 2.57
5475 5865 5.903198 AAAAATGAAACTTTGGGGGATCA 57.097 34.783 0.00 0.00 0.00 2.92
5526 5919 2.303022 ACCACTACACCCTCATGAACAG 59.697 50.000 0.00 0.00 0.00 3.16
5574 5967 9.186837 GGGAGAACGATATGACTATTTAGGATA 57.813 37.037 0.00 0.00 0.00 2.59
5600 5993 9.233232 GAACCTGTAAATTTAACAGTGTTCTTG 57.767 33.333 25.77 15.47 43.14 3.02
5636 6029 9.176181 GAATGTTTTTAACTCTTCGTGCAATTA 57.824 29.630 0.00 0.00 0.00 1.40
5657 6050 3.199677 TCTTTTCGGTGTTCGTGAATGT 58.800 40.909 0.00 0.00 40.32 2.71
5756 6149 2.079158 TGGATGAAGAGCAAAGCTTCG 58.921 47.619 0.00 0.00 43.57 3.79
5762 6155 2.297033 GCCACTTTGGATGAAGAGCAAA 59.703 45.455 0.00 0.00 40.96 3.68
5817 6213 1.377536 GAGCATCAGAAACAGGGAGC 58.622 55.000 0.00 0.00 33.17 4.70
5828 6224 2.366533 AGCACAATGAAGGAGCATCAG 58.633 47.619 0.00 0.00 36.25 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.