Multiple sequence alignment - TraesCS2A01G525900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G525900 chr2A 100.000 3143 0 0 1 3143 746595599 746598741 0.000000e+00 5805.0
1 TraesCS2A01G525900 chr2A 96.296 54 2 0 2232 2285 343419874 343419821 4.320000e-14 89.8
2 TraesCS2A01G525900 chr2B 91.533 2244 114 31 928 3143 751255870 751258065 0.000000e+00 3022.0
3 TraesCS2A01G525900 chr2B 84.343 792 110 12 76 861 211994480 211993697 0.000000e+00 763.0
4 TraesCS2A01G525900 chr2B 77.387 398 68 18 75 463 390609307 390608923 1.900000e-52 217.0
5 TraesCS2A01G525900 chr2D 96.377 1325 43 4 926 2247 616501983 616503305 0.000000e+00 2176.0
6 TraesCS2A01G525900 chr2D 93.908 870 23 8 2277 3143 616503304 616504146 0.000000e+00 1286.0
7 TraesCS2A01G525900 chr2D 97.917 48 1 0 2238 2285 566655080 566655127 2.010000e-12 84.2
8 TraesCS2A01G525900 chr2D 95.349 43 2 0 2447 2489 616503417 616503459 5.620000e-08 69.4
9 TraesCS2A01G525900 chr3D 84.887 794 111 8 68 855 523397515 523398305 0.000000e+00 793.0
10 TraesCS2A01G525900 chr3D 95.918 49 2 0 2233 2281 82752866 82752818 2.600000e-11 80.5
11 TraesCS2A01G525900 chr6B 84.257 794 112 12 68 853 469710972 469710184 0.000000e+00 761.0
12 TraesCS2A01G525900 chr4A 86.297 613 71 10 249 853 571366402 571367009 0.000000e+00 654.0
13 TraesCS2A01G525900 chr4A 85.644 606 75 8 249 847 588662325 588662925 7.400000e-176 627.0
14 TraesCS2A01G525900 chr7A 86.111 612 73 8 249 853 140771182 140771788 0.000000e+00 649.0
15 TraesCS2A01G525900 chr7A 86.111 612 73 8 249 853 141655160 141655766 0.000000e+00 649.0
16 TraesCS2A01G525900 chr7A 85.784 612 75 8 249 853 141060630 141061236 3.420000e-179 638.0
17 TraesCS2A01G525900 chr7A 85.808 613 73 10 249 853 141314429 141315035 3.420000e-179 638.0
18 TraesCS2A01G525900 chr7A 95.833 48 2 0 2238 2285 501073966 501073919 9.350000e-11 78.7
19 TraesCS2A01G525900 chr5D 94.340 53 1 2 2234 2285 373214663 373214612 2.600000e-11 80.5
20 TraesCS2A01G525900 chr4D 94.231 52 3 0 2234 2285 333063266 333063317 2.600000e-11 80.5
21 TraesCS2A01G525900 chr3B 97.778 45 1 0 2241 2285 125879680 125879636 9.350000e-11 78.7
22 TraesCS2A01G525900 chr7D 94.000 50 3 0 2238 2287 252560707 252560756 3.360000e-10 76.8
23 TraesCS2A01G525900 chr6D 90.741 54 5 0 2224 2277 423213781 423213834 4.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G525900 chr2A 746595599 746598741 3142 False 5805.000000 5805 100.000000 1 3143 1 chr2A.!!$F1 3142
1 TraesCS2A01G525900 chr2B 751255870 751258065 2195 False 3022.000000 3022 91.533000 928 3143 1 chr2B.!!$F1 2215
2 TraesCS2A01G525900 chr2B 211993697 211994480 783 True 763.000000 763 84.343000 76 861 1 chr2B.!!$R1 785
3 TraesCS2A01G525900 chr2D 616501983 616504146 2163 False 1177.133333 2176 95.211333 926 3143 3 chr2D.!!$F2 2217
4 TraesCS2A01G525900 chr3D 523397515 523398305 790 False 793.000000 793 84.887000 68 855 1 chr3D.!!$F1 787
5 TraesCS2A01G525900 chr6B 469710184 469710972 788 True 761.000000 761 84.257000 68 853 1 chr6B.!!$R1 785
6 TraesCS2A01G525900 chr4A 571366402 571367009 607 False 654.000000 654 86.297000 249 853 1 chr4A.!!$F1 604
7 TraesCS2A01G525900 chr4A 588662325 588662925 600 False 627.000000 627 85.644000 249 847 1 chr4A.!!$F2 598
8 TraesCS2A01G525900 chr7A 140771182 140771788 606 False 649.000000 649 86.111000 249 853 1 chr7A.!!$F1 604
9 TraesCS2A01G525900 chr7A 141655160 141655766 606 False 649.000000 649 86.111000 249 853 1 chr7A.!!$F4 604
10 TraesCS2A01G525900 chr7A 141060630 141061236 606 False 638.000000 638 85.784000 249 853 1 chr7A.!!$F2 604
11 TraesCS2A01G525900 chr7A 141314429 141315035 606 False 638.000000 638 85.808000 249 853 1 chr7A.!!$F3 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.038166 AATCACGTCTGCCCATGGTT 59.962 50.0 11.73 0.0 0.0 3.67 F
490 491 0.107081 TCTTTTTCTTCGCCACGGGA 59.893 50.0 0.00 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1116 1127 0.535335 GGTACTCGGCCATGAAGTGA 59.465 55.0 2.24 0.0 0.0 3.41 R
2394 2430 0.850100 TTGACTGGTGTTGGGATGGT 59.150 50.0 0.00 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.570181 GCAACAGCCATGTGAGCC 59.430 61.111 0.00 0.00 40.39 4.70
18 19 2.872557 CAACAGCCATGTGAGCCG 59.127 61.111 0.00 0.00 40.39 5.52
19 20 1.672030 CAACAGCCATGTGAGCCGA 60.672 57.895 0.00 0.00 40.39 5.54
20 21 1.028330 CAACAGCCATGTGAGCCGAT 61.028 55.000 0.00 0.00 40.39 4.18
21 22 1.028330 AACAGCCATGTGAGCCGATG 61.028 55.000 0.00 0.00 40.39 3.84
22 23 1.450848 CAGCCATGTGAGCCGATGT 60.451 57.895 0.00 0.00 0.00 3.06
23 24 1.450848 AGCCATGTGAGCCGATGTG 60.451 57.895 0.00 0.00 0.00 3.21
24 25 1.450134 GCCATGTGAGCCGATGTGA 60.450 57.895 0.00 0.00 0.00 3.58
25 26 1.026182 GCCATGTGAGCCGATGTGAA 61.026 55.000 0.00 0.00 0.00 3.18
26 27 0.729116 CCATGTGAGCCGATGTGAAC 59.271 55.000 0.00 0.00 0.00 3.18
27 28 0.371301 CATGTGAGCCGATGTGAACG 59.629 55.000 0.00 0.00 0.00 3.95
28 29 0.246360 ATGTGAGCCGATGTGAACGA 59.754 50.000 0.00 0.00 0.00 3.85
29 30 0.246360 TGTGAGCCGATGTGAACGAT 59.754 50.000 0.00 0.00 0.00 3.73
30 31 0.924090 GTGAGCCGATGTGAACGATC 59.076 55.000 0.00 0.00 0.00 3.69
31 32 0.525455 TGAGCCGATGTGAACGATCG 60.525 55.000 14.88 14.88 41.94 3.69
34 35 4.012554 CGATGTGAACGATCGGGG 57.987 61.111 20.98 0.00 39.23 5.73
35 36 1.141019 CGATGTGAACGATCGGGGT 59.859 57.895 20.98 3.77 39.23 4.95
36 37 0.459585 CGATGTGAACGATCGGGGTT 60.460 55.000 20.98 4.40 39.23 4.11
37 38 1.006832 GATGTGAACGATCGGGGTTG 58.993 55.000 20.98 0.00 0.00 3.77
38 39 1.024579 ATGTGAACGATCGGGGTTGC 61.025 55.000 20.98 5.00 0.00 4.17
39 40 1.375523 GTGAACGATCGGGGTTGCT 60.376 57.895 20.98 0.00 0.00 3.91
40 41 0.953960 GTGAACGATCGGGGTTGCTT 60.954 55.000 20.98 1.92 0.00 3.91
41 42 0.672401 TGAACGATCGGGGTTGCTTC 60.672 55.000 20.98 12.22 0.00 3.86
42 43 1.366854 GAACGATCGGGGTTGCTTCC 61.367 60.000 20.98 0.00 0.00 3.46
43 44 1.838073 AACGATCGGGGTTGCTTCCT 61.838 55.000 20.98 0.00 0.00 3.36
44 45 1.078426 CGATCGGGGTTGCTTCCTT 60.078 57.895 7.38 0.00 0.00 3.36
45 46 0.676782 CGATCGGGGTTGCTTCCTTT 60.677 55.000 7.38 0.00 0.00 3.11
46 47 0.811281 GATCGGGGTTGCTTCCTTTG 59.189 55.000 0.00 0.00 0.00 2.77
47 48 1.250840 ATCGGGGTTGCTTCCTTTGC 61.251 55.000 0.00 0.00 0.00 3.68
48 49 2.650778 GGGGTTGCTTCCTTTGCG 59.349 61.111 0.00 0.00 0.00 4.85
49 50 2.200337 GGGGTTGCTTCCTTTGCGT 61.200 57.895 0.00 0.00 0.00 5.24
50 51 1.007387 GGGTTGCTTCCTTTGCGTG 60.007 57.895 0.00 0.00 0.00 5.34
51 52 1.733526 GGTTGCTTCCTTTGCGTGT 59.266 52.632 0.00 0.00 0.00 4.49
52 53 0.317854 GGTTGCTTCCTTTGCGTGTC 60.318 55.000 0.00 0.00 0.00 3.67
53 54 0.657368 GTTGCTTCCTTTGCGTGTCG 60.657 55.000 0.00 0.00 0.00 4.35
54 55 1.092921 TTGCTTCCTTTGCGTGTCGT 61.093 50.000 0.00 0.00 0.00 4.34
55 56 1.204312 GCTTCCTTTGCGTGTCGTC 59.796 57.895 0.00 0.00 0.00 4.20
56 57 1.222115 GCTTCCTTTGCGTGTCGTCT 61.222 55.000 0.00 0.00 0.00 4.18
57 58 1.217882 CTTCCTTTGCGTGTCGTCTT 58.782 50.000 0.00 0.00 0.00 3.01
58 59 0.934496 TTCCTTTGCGTGTCGTCTTG 59.066 50.000 0.00 0.00 0.00 3.02
59 60 0.103390 TCCTTTGCGTGTCGTCTTGA 59.897 50.000 0.00 0.00 0.00 3.02
60 61 0.508641 CCTTTGCGTGTCGTCTTGAG 59.491 55.000 0.00 0.00 0.00 3.02
61 62 0.508641 CTTTGCGTGTCGTCTTGAGG 59.491 55.000 0.00 0.00 0.00 3.86
62 63 0.179094 TTTGCGTGTCGTCTTGAGGT 60.179 50.000 0.00 0.00 0.00 3.85
63 64 0.596600 TTGCGTGTCGTCTTGAGGTC 60.597 55.000 0.00 0.00 0.00 3.85
64 65 2.081212 GCGTGTCGTCTTGAGGTCG 61.081 63.158 0.00 0.00 0.00 4.79
65 66 1.572941 CGTGTCGTCTTGAGGTCGA 59.427 57.895 0.00 0.00 0.00 4.20
66 67 0.168348 CGTGTCGTCTTGAGGTCGAT 59.832 55.000 0.00 0.00 36.08 3.59
73 74 1.141881 CTTGAGGTCGATGTCCGGG 59.858 63.158 0.00 0.00 39.14 5.73
102 103 0.038166 AATCACGTCTGCCCATGGTT 59.962 50.000 11.73 0.00 0.00 3.67
154 155 2.986979 TGTGTGACGGGCGAGCTA 60.987 61.111 0.00 0.00 0.00 3.32
158 159 4.435970 TGACGGGCGAGCTAGGGA 62.436 66.667 0.00 0.00 0.00 4.20
163 164 2.577593 GGCGAGCTAGGGAAACGT 59.422 61.111 0.00 0.00 0.00 3.99
174 175 4.307908 GAAACGTTGCTGCGGCGT 62.308 61.111 13.96 13.90 42.25 5.68
268 269 0.548926 TACCCAACATGAGGAGGGCA 60.549 55.000 0.00 0.00 45.45 5.36
288 289 2.579201 CGCCTTGGAGACGATGGT 59.421 61.111 0.00 0.00 0.00 3.55
347 348 3.360340 GCAGGGCACACTCAGCAC 61.360 66.667 0.00 0.00 35.04 4.40
355 356 0.313987 CACACTCAGCACCGTACTCA 59.686 55.000 0.00 0.00 0.00 3.41
490 491 0.107081 TCTTTTTCTTCGCCACGGGA 59.893 50.000 0.00 0.00 0.00 5.14
551 552 1.842007 CATGGTGGATGGAGGAGGG 59.158 63.158 0.00 0.00 0.00 4.30
552 553 0.695462 CATGGTGGATGGAGGAGGGA 60.695 60.000 0.00 0.00 0.00 4.20
666 672 3.637273 GGGAGGACAAGGGCACGT 61.637 66.667 0.00 0.00 0.00 4.49
725 731 4.379174 GCTCAAACTTGGGCGAGA 57.621 55.556 0.00 0.00 45.83 4.04
740 746 1.269448 GCGAGAAATGGGTCAAAAGCA 59.731 47.619 0.00 0.00 0.00 3.91
745 751 3.960102 AGAAATGGGTCAAAAGCAGACAA 59.040 39.130 0.00 0.00 37.74 3.18
806 813 2.853705 CTCCTTTGTTCGTTTACCCCA 58.146 47.619 0.00 0.00 0.00 4.96
847 855 0.520404 TGGAGTCGTGCGTTAGAGTC 59.480 55.000 3.49 3.49 36.40 3.36
856 864 0.171903 GCGTTAGAGTCGGCCTTACA 59.828 55.000 0.00 0.00 0.00 2.41
857 865 1.905449 CGTTAGAGTCGGCCTTACAC 58.095 55.000 0.00 0.00 0.00 2.90
858 866 1.468736 CGTTAGAGTCGGCCTTACACC 60.469 57.143 0.00 0.00 0.00 4.16
859 867 1.547372 GTTAGAGTCGGCCTTACACCA 59.453 52.381 0.00 0.00 0.00 4.17
860 868 1.927487 TAGAGTCGGCCTTACACCAA 58.073 50.000 0.00 0.00 0.00 3.67
861 869 1.053424 AGAGTCGGCCTTACACCAAA 58.947 50.000 0.00 0.00 0.00 3.28
862 870 1.628846 AGAGTCGGCCTTACACCAAAT 59.371 47.619 0.00 0.00 0.00 2.32
863 871 1.737793 GAGTCGGCCTTACACCAAATG 59.262 52.381 0.00 0.00 0.00 2.32
864 872 0.170339 GTCGGCCTTACACCAAATGC 59.830 55.000 0.00 0.00 0.00 3.56
865 873 0.250945 TCGGCCTTACACCAAATGCA 60.251 50.000 0.00 0.00 0.00 3.96
866 874 0.817013 CGGCCTTACACCAAATGCAT 59.183 50.000 0.00 0.00 0.00 3.96
867 875 1.202290 CGGCCTTACACCAAATGCATC 60.202 52.381 0.00 0.00 0.00 3.91
868 876 2.102578 GGCCTTACACCAAATGCATCT 58.897 47.619 0.00 0.00 0.00 2.90
869 877 2.497273 GGCCTTACACCAAATGCATCTT 59.503 45.455 0.00 0.00 0.00 2.40
870 878 3.699038 GGCCTTACACCAAATGCATCTTA 59.301 43.478 0.00 0.00 0.00 2.10
871 879 4.440112 GGCCTTACACCAAATGCATCTTAC 60.440 45.833 0.00 0.00 0.00 2.34
872 880 4.157656 GCCTTACACCAAATGCATCTTACA 59.842 41.667 0.00 0.00 0.00 2.41
873 881 5.163519 GCCTTACACCAAATGCATCTTACAT 60.164 40.000 0.00 0.00 0.00 2.29
874 882 6.627953 GCCTTACACCAAATGCATCTTACATT 60.628 38.462 0.00 0.00 39.38 2.71
875 883 7.322664 CCTTACACCAAATGCATCTTACATTT 58.677 34.615 0.00 0.00 46.05 2.32
884 892 8.851541 AAATGCATCTTACATTTGTGGAATTT 57.148 26.923 0.00 0.00 44.05 1.82
885 893 8.851541 AATGCATCTTACATTTGTGGAATTTT 57.148 26.923 0.00 0.00 34.05 1.82
886 894 9.941325 AATGCATCTTACATTTGTGGAATTTTA 57.059 25.926 0.00 0.00 34.05 1.52
887 895 8.984891 TGCATCTTACATTTGTGGAATTTTAG 57.015 30.769 0.00 0.00 0.00 1.85
888 896 8.584157 TGCATCTTACATTTGTGGAATTTTAGT 58.416 29.630 0.00 0.00 0.00 2.24
916 924 6.823286 AAAAGAAAAAGGGAAAGGAATGGA 57.177 33.333 0.00 0.00 0.00 3.41
917 925 6.425210 AAAGAAAAAGGGAAAGGAATGGAG 57.575 37.500 0.00 0.00 0.00 3.86
918 926 4.420206 AGAAAAAGGGAAAGGAATGGAGG 58.580 43.478 0.00 0.00 0.00 4.30
919 927 2.928036 AAAGGGAAAGGAATGGAGGG 57.072 50.000 0.00 0.00 0.00 4.30
920 928 2.074922 AAGGGAAAGGAATGGAGGGA 57.925 50.000 0.00 0.00 0.00 4.20
921 929 1.601248 AGGGAAAGGAATGGAGGGAG 58.399 55.000 0.00 0.00 0.00 4.30
922 930 1.203622 AGGGAAAGGAATGGAGGGAGT 60.204 52.381 0.00 0.00 0.00 3.85
923 931 2.047296 AGGGAAAGGAATGGAGGGAGTA 59.953 50.000 0.00 0.00 0.00 2.59
924 932 3.056832 GGGAAAGGAATGGAGGGAGTAT 58.943 50.000 0.00 0.00 0.00 2.12
936 944 7.831691 ATGGAGGGAGTATTATATCAGATCG 57.168 40.000 0.00 0.00 0.00 3.69
938 946 5.594725 GGAGGGAGTATTATATCAGATCGCA 59.405 44.000 0.00 0.00 0.00 5.10
946 954 0.596577 TATCAGATCGCACGGGTAGC 59.403 55.000 0.00 0.00 0.00 3.58
1241 1252 2.646175 CCGTTCTCGCCTTCCTCCA 61.646 63.158 0.00 0.00 35.54 3.86
1245 1256 0.251832 TTCTCGCCTTCCTCCACTCT 60.252 55.000 0.00 0.00 0.00 3.24
1251 1262 1.621672 CCTTCCTCCACTCTCAGGGC 61.622 65.000 0.00 0.00 0.00 5.19
2073 2084 6.127897 CCATTTTTGTGGAGAGGTACATTCTC 60.128 42.308 14.89 14.89 42.02 2.87
2261 2272 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2267 2278 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
2393 2429 7.921786 TTTTCAAATTCCATCGTCTGTATCT 57.078 32.000 0.00 0.00 0.00 1.98
2394 2430 9.613428 ATTTTCAAATTCCATCGTCTGTATCTA 57.387 29.630 0.00 0.00 0.00 1.98
2395 2431 8.420374 TTTCAAATTCCATCGTCTGTATCTAC 57.580 34.615 0.00 0.00 0.00 2.59
2396 2432 6.513180 TCAAATTCCATCGTCTGTATCTACC 58.487 40.000 0.00 0.00 0.00 3.18
2397 2433 6.097696 TCAAATTCCATCGTCTGTATCTACCA 59.902 38.462 0.00 0.00 0.00 3.25
2398 2434 6.672266 AATTCCATCGTCTGTATCTACCAT 57.328 37.500 0.00 0.00 0.00 3.55
2399 2435 5.707242 TTCCATCGTCTGTATCTACCATC 57.293 43.478 0.00 0.00 0.00 3.51
2400 2436 4.079970 TCCATCGTCTGTATCTACCATCC 58.920 47.826 0.00 0.00 0.00 3.51
2401 2437 3.193691 CCATCGTCTGTATCTACCATCCC 59.806 52.174 0.00 0.00 0.00 3.85
2402 2438 3.588210 TCGTCTGTATCTACCATCCCA 57.412 47.619 0.00 0.00 0.00 4.37
2403 2439 3.905968 TCGTCTGTATCTACCATCCCAA 58.094 45.455 0.00 0.00 0.00 4.12
2404 2440 3.635373 TCGTCTGTATCTACCATCCCAAC 59.365 47.826 0.00 0.00 0.00 3.77
2405 2441 3.383505 CGTCTGTATCTACCATCCCAACA 59.616 47.826 0.00 0.00 0.00 3.33
2406 2442 4.694339 GTCTGTATCTACCATCCCAACAC 58.306 47.826 0.00 0.00 0.00 3.32
2407 2443 3.709653 TCTGTATCTACCATCCCAACACC 59.290 47.826 0.00 0.00 0.00 4.16
2408 2444 3.454447 CTGTATCTACCATCCCAACACCA 59.546 47.826 0.00 0.00 0.00 4.17
2409 2445 3.454447 TGTATCTACCATCCCAACACCAG 59.546 47.826 0.00 0.00 0.00 4.00
2410 2446 2.038863 TCTACCATCCCAACACCAGT 57.961 50.000 0.00 0.00 0.00 4.00
2411 2447 1.906574 TCTACCATCCCAACACCAGTC 59.093 52.381 0.00 0.00 0.00 3.51
2412 2448 1.628340 CTACCATCCCAACACCAGTCA 59.372 52.381 0.00 0.00 0.00 3.41
2413 2449 0.850100 ACCATCCCAACACCAGTCAA 59.150 50.000 0.00 0.00 0.00 3.18
2414 2450 1.202927 ACCATCCCAACACCAGTCAAG 60.203 52.381 0.00 0.00 0.00 3.02
2415 2451 1.202927 CCATCCCAACACCAGTCAAGT 60.203 52.381 0.00 0.00 0.00 3.16
2416 2452 2.586425 CATCCCAACACCAGTCAAGTT 58.414 47.619 0.00 0.00 0.00 2.66
2417 2453 2.818751 TCCCAACACCAGTCAAGTTT 57.181 45.000 0.00 0.00 0.00 2.66
2418 2454 3.935818 TCCCAACACCAGTCAAGTTTA 57.064 42.857 0.00 0.00 0.00 2.01
2419 2455 4.237976 TCCCAACACCAGTCAAGTTTAA 57.762 40.909 0.00 0.00 0.00 1.52
2420 2456 4.204012 TCCCAACACCAGTCAAGTTTAAG 58.796 43.478 0.00 0.00 0.00 1.85
2421 2457 4.080243 TCCCAACACCAGTCAAGTTTAAGA 60.080 41.667 0.00 0.00 0.00 2.10
2422 2458 4.642885 CCCAACACCAGTCAAGTTTAAGAA 59.357 41.667 0.00 0.00 0.00 2.52
2423 2459 5.126384 CCCAACACCAGTCAAGTTTAAGAAA 59.874 40.000 0.00 0.00 0.00 2.52
2424 2460 6.265577 CCAACACCAGTCAAGTTTAAGAAAG 58.734 40.000 0.00 0.00 0.00 2.62
2425 2461 6.094881 CCAACACCAGTCAAGTTTAAGAAAGA 59.905 38.462 0.00 0.00 0.00 2.52
2426 2462 7.362574 CCAACACCAGTCAAGTTTAAGAAAGAA 60.363 37.037 0.00 0.00 0.00 2.52
2427 2463 7.085052 ACACCAGTCAAGTTTAAGAAAGAAC 57.915 36.000 0.00 0.00 0.00 3.01
2428 2464 6.884836 ACACCAGTCAAGTTTAAGAAAGAACT 59.115 34.615 0.00 0.00 37.69 3.01
2429 2465 7.148239 ACACCAGTCAAGTTTAAGAAAGAACTG 60.148 37.037 0.00 0.00 36.31 3.16
2430 2466 7.065803 CACCAGTCAAGTTTAAGAAAGAACTGA 59.934 37.037 0.00 0.00 36.31 3.41
2431 2467 7.610305 ACCAGTCAAGTTTAAGAAAGAACTGAA 59.390 33.333 0.00 0.00 36.31 3.02
2432 2468 8.624776 CCAGTCAAGTTTAAGAAAGAACTGAAT 58.375 33.333 0.00 0.00 36.31 2.57
2433 2469 9.443283 CAGTCAAGTTTAAGAAAGAACTGAATG 57.557 33.333 0.00 0.00 36.31 2.67
2434 2470 9.178758 AGTCAAGTTTAAGAAAGAACTGAATGT 57.821 29.630 0.00 0.00 36.31 2.71
2435 2471 9.226345 GTCAAGTTTAAGAAAGAACTGAATGTG 57.774 33.333 0.00 0.00 36.31 3.21
2436 2472 9.173021 TCAAGTTTAAGAAAGAACTGAATGTGA 57.827 29.630 0.00 0.00 36.31 3.58
2437 2473 9.226345 CAAGTTTAAGAAAGAACTGAATGTGAC 57.774 33.333 0.00 0.00 36.31 3.67
2438 2474 8.506168 AGTTTAAGAAAGAACTGAATGTGACA 57.494 30.769 0.00 0.00 34.96 3.58
2439 2475 9.125026 AGTTTAAGAAAGAACTGAATGTGACAT 57.875 29.630 0.00 0.00 34.96 3.06
2443 2479 8.450578 AAGAAAGAACTGAATGTGACATAACA 57.549 30.769 0.00 1.93 0.00 2.41
2444 2480 7.865707 AGAAAGAACTGAATGTGACATAACAC 58.134 34.615 0.00 0.00 40.68 3.32
2530 2600 3.293311 AACATGATTCACTTGCTGCAC 57.707 42.857 0.00 0.00 0.00 4.57
2606 2676 3.120060 GCTCATCATGAACAGCGTTTCTT 60.120 43.478 12.19 0.00 0.00 2.52
2892 2972 1.073216 CTCGTAGGCAGCAGTTGACG 61.073 60.000 0.00 0.00 40.94 4.35
3017 3100 0.673333 CCGCATACCAGTTCTGTGCA 60.673 55.000 12.10 0.00 35.63 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.570181 GGCTCACATGGCTGTTGC 59.430 61.111 0.00 0.00 31.62 4.17
1 2 1.028330 ATCGGCTCACATGGCTGTTG 61.028 55.000 0.00 0.00 37.35 3.33
2 3 1.028330 CATCGGCTCACATGGCTGTT 61.028 55.000 0.00 0.00 37.35 3.16
3 4 1.450848 CATCGGCTCACATGGCTGT 60.451 57.895 0.00 0.00 37.35 4.40
4 5 1.450848 ACATCGGCTCACATGGCTG 60.451 57.895 0.00 0.00 37.41 4.85
5 6 1.450848 CACATCGGCTCACATGGCT 60.451 57.895 0.00 0.00 0.00 4.75
6 7 1.026182 TTCACATCGGCTCACATGGC 61.026 55.000 0.00 0.00 0.00 4.40
7 8 0.729116 GTTCACATCGGCTCACATGG 59.271 55.000 0.00 0.00 0.00 3.66
8 9 0.371301 CGTTCACATCGGCTCACATG 59.629 55.000 0.00 0.00 0.00 3.21
9 10 0.246360 TCGTTCACATCGGCTCACAT 59.754 50.000 0.00 0.00 0.00 3.21
10 11 0.246360 ATCGTTCACATCGGCTCACA 59.754 50.000 0.00 0.00 0.00 3.58
11 12 0.924090 GATCGTTCACATCGGCTCAC 59.076 55.000 0.00 0.00 0.00 3.51
12 13 0.525455 CGATCGTTCACATCGGCTCA 60.525 55.000 7.03 0.00 39.62 4.26
13 14 2.208074 CGATCGTTCACATCGGCTC 58.792 57.895 7.03 0.00 39.62 4.70
14 15 4.402192 CGATCGTTCACATCGGCT 57.598 55.556 7.03 0.00 39.62 5.52
17 18 0.459585 AACCCCGATCGTTCACATCG 60.460 55.000 15.09 0.00 42.36 3.84
18 19 1.006832 CAACCCCGATCGTTCACATC 58.993 55.000 15.09 0.00 0.00 3.06
19 20 1.024579 GCAACCCCGATCGTTCACAT 61.025 55.000 15.09 0.00 0.00 3.21
20 21 1.669760 GCAACCCCGATCGTTCACA 60.670 57.895 15.09 0.00 0.00 3.58
21 22 0.953960 AAGCAACCCCGATCGTTCAC 60.954 55.000 15.09 0.00 0.00 3.18
22 23 0.672401 GAAGCAACCCCGATCGTTCA 60.672 55.000 15.09 0.00 0.00 3.18
23 24 1.366854 GGAAGCAACCCCGATCGTTC 61.367 60.000 15.09 8.93 0.00 3.95
24 25 1.376812 GGAAGCAACCCCGATCGTT 60.377 57.895 15.09 0.00 0.00 3.85
25 26 1.838073 AAGGAAGCAACCCCGATCGT 61.838 55.000 15.09 0.00 0.00 3.73
26 27 0.676782 AAAGGAAGCAACCCCGATCG 60.677 55.000 8.51 8.51 0.00 3.69
27 28 0.811281 CAAAGGAAGCAACCCCGATC 59.189 55.000 0.00 0.00 0.00 3.69
28 29 1.250840 GCAAAGGAAGCAACCCCGAT 61.251 55.000 0.00 0.00 0.00 4.18
29 30 1.901464 GCAAAGGAAGCAACCCCGA 60.901 57.895 0.00 0.00 0.00 5.14
30 31 2.650778 GCAAAGGAAGCAACCCCG 59.349 61.111 0.00 0.00 0.00 5.73
31 32 2.200337 ACGCAAAGGAAGCAACCCC 61.200 57.895 0.00 0.00 0.00 4.95
32 33 1.007387 CACGCAAAGGAAGCAACCC 60.007 57.895 0.00 0.00 0.00 4.11
33 34 0.317854 GACACGCAAAGGAAGCAACC 60.318 55.000 0.00 0.00 0.00 3.77
34 35 0.657368 CGACACGCAAAGGAAGCAAC 60.657 55.000 0.00 0.00 0.00 4.17
35 36 1.092921 ACGACACGCAAAGGAAGCAA 61.093 50.000 0.00 0.00 0.00 3.91
36 37 1.495584 GACGACACGCAAAGGAAGCA 61.496 55.000 0.00 0.00 0.00 3.91
37 38 1.204312 GACGACACGCAAAGGAAGC 59.796 57.895 0.00 0.00 0.00 3.86
38 39 1.070577 CAAGACGACACGCAAAGGAAG 60.071 52.381 0.00 0.00 0.00 3.46
39 40 0.934496 CAAGACGACACGCAAAGGAA 59.066 50.000 0.00 0.00 0.00 3.36
40 41 0.103390 TCAAGACGACACGCAAAGGA 59.897 50.000 0.00 0.00 0.00 3.36
41 42 0.508641 CTCAAGACGACACGCAAAGG 59.491 55.000 0.00 0.00 0.00 3.11
42 43 0.508641 CCTCAAGACGACACGCAAAG 59.491 55.000 0.00 0.00 0.00 2.77
43 44 0.179094 ACCTCAAGACGACACGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
44 45 0.596600 GACCTCAAGACGACACGCAA 60.597 55.000 0.00 0.00 0.00 4.85
45 46 1.007734 GACCTCAAGACGACACGCA 60.008 57.895 0.00 0.00 0.00 5.24
46 47 2.081212 CGACCTCAAGACGACACGC 61.081 63.158 0.00 0.00 0.00 5.34
47 48 0.168348 ATCGACCTCAAGACGACACG 59.832 55.000 0.00 0.00 38.79 4.49
48 49 1.068472 ACATCGACCTCAAGACGACAC 60.068 52.381 0.00 0.00 38.79 3.67
49 50 1.199327 GACATCGACCTCAAGACGACA 59.801 52.381 0.00 0.00 38.79 4.35
50 51 1.467713 GGACATCGACCTCAAGACGAC 60.468 57.143 0.00 0.00 38.79 4.34
51 52 0.809385 GGACATCGACCTCAAGACGA 59.191 55.000 0.00 0.00 40.18 4.20
52 53 0.523546 CGGACATCGACCTCAAGACG 60.524 60.000 0.00 0.00 42.43 4.18
53 54 0.179134 CCGGACATCGACCTCAAGAC 60.179 60.000 0.00 0.00 42.43 3.01
54 55 1.320344 CCCGGACATCGACCTCAAGA 61.320 60.000 0.73 0.00 42.43 3.02
55 56 1.141881 CCCGGACATCGACCTCAAG 59.858 63.158 0.73 0.00 42.43 3.02
56 57 2.355986 CCCCGGACATCGACCTCAA 61.356 63.158 0.73 0.00 42.43 3.02
57 58 2.758327 CCCCGGACATCGACCTCA 60.758 66.667 0.73 0.00 42.43 3.86
58 59 2.441532 TCCCCGGACATCGACCTC 60.442 66.667 0.73 0.00 42.43 3.85
59 60 2.758737 GTCCCCGGACATCGACCT 60.759 66.667 0.73 0.00 44.02 3.85
60 61 4.203076 CGTCCCCGGACATCGACC 62.203 72.222 14.11 0.00 44.77 4.79
61 62 2.056481 CTACGTCCCCGGACATCGAC 62.056 65.000 14.11 0.00 44.77 4.20
62 63 1.820906 CTACGTCCCCGGACATCGA 60.821 63.158 14.11 0.00 44.77 3.59
63 64 1.783031 CTCTACGTCCCCGGACATCG 61.783 65.000 14.11 4.79 44.77 3.84
64 65 0.465097 TCTCTACGTCCCCGGACATC 60.465 60.000 14.11 0.00 44.77 3.06
65 66 0.033796 TTCTCTACGTCCCCGGACAT 60.034 55.000 14.11 0.83 44.77 3.06
66 67 0.033796 ATTCTCTACGTCCCCGGACA 60.034 55.000 14.11 0.00 44.77 4.02
147 148 1.967597 GCAACGTTTCCCTAGCTCGC 61.968 60.000 0.00 0.00 0.00 5.03
154 155 2.978010 CCGCAGCAACGTTTCCCT 60.978 61.111 0.00 0.00 0.00 4.20
158 159 2.968156 TACGCCGCAGCAACGTTT 60.968 55.556 14.27 0.00 40.99 3.60
163 164 3.185365 CATCGTACGCCGCAGCAA 61.185 61.111 11.24 0.00 39.83 3.91
174 175 3.896133 GCTCGTCGGCCCATCGTA 61.896 66.667 0.00 0.00 0.00 3.43
216 217 2.498941 CCGGCTAATCTCTCGGCCA 61.499 63.158 2.24 0.00 44.27 5.36
268 269 1.522355 CATCGTCTCCAAGGCGCAT 60.522 57.895 10.83 0.00 44.10 4.73
288 289 1.296755 CGACCTCGACGACAAGGAGA 61.297 60.000 8.48 0.00 43.02 3.71
355 356 4.459089 GAGAAGAAGGCCGCCGCT 62.459 66.667 3.05 2.65 34.44 5.52
388 389 2.291043 GGCCAAGAGGAGGAACCGA 61.291 63.158 0.00 0.00 44.74 4.69
514 515 2.439701 TCGACGAGGCGAATCCCT 60.440 61.111 0.00 0.00 37.35 4.20
722 728 3.569701 TGTCTGCTTTTGACCCATTTCTC 59.430 43.478 0.00 0.00 33.83 2.87
725 731 4.751767 TTTGTCTGCTTTTGACCCATTT 57.248 36.364 0.00 0.00 33.83 2.32
745 751 1.926490 CGGACCGTCGTTCGTTTTT 59.074 52.632 5.48 0.00 36.15 1.94
785 792 1.538512 GGGGTAAACGAACAAAGGAGC 59.461 52.381 0.00 0.00 0.00 4.70
788 795 3.708890 GTTTGGGGTAAACGAACAAAGG 58.291 45.455 0.00 0.00 39.29 3.11
831 839 1.500844 CCGACTCTAACGCACGACT 59.499 57.895 0.00 0.00 0.00 4.18
847 855 0.817013 ATGCATTTGGTGTAAGGCCG 59.183 50.000 0.00 0.00 0.00 6.13
859 867 8.851541 AAATTCCACAAATGTAAGATGCATTT 57.148 26.923 0.00 0.00 44.46 2.32
860 868 8.851541 AAAATTCCACAAATGTAAGATGCATT 57.148 26.923 0.00 0.00 38.09 3.56
861 869 9.590451 CTAAAATTCCACAAATGTAAGATGCAT 57.410 29.630 0.00 0.00 0.00 3.96
862 870 8.584157 ACTAAAATTCCACAAATGTAAGATGCA 58.416 29.630 0.00 0.00 0.00 3.96
863 871 8.986477 ACTAAAATTCCACAAATGTAAGATGC 57.014 30.769 0.00 0.00 0.00 3.91
892 900 7.206789 TCCATTCCTTTCCCTTTTTCTTTTT 57.793 32.000 0.00 0.00 0.00 1.94
893 901 6.183361 CCTCCATTCCTTTCCCTTTTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
894 902 5.307976 CCTCCATTCCTTTCCCTTTTTCTTT 59.692 40.000 0.00 0.00 0.00 2.52
895 903 4.840680 CCTCCATTCCTTTCCCTTTTTCTT 59.159 41.667 0.00 0.00 0.00 2.52
896 904 4.420206 CCTCCATTCCTTTCCCTTTTTCT 58.580 43.478 0.00 0.00 0.00 2.52
897 905 3.515502 CCCTCCATTCCTTTCCCTTTTTC 59.484 47.826 0.00 0.00 0.00 2.29
898 906 3.143933 TCCCTCCATTCCTTTCCCTTTTT 59.856 43.478 0.00 0.00 0.00 1.94
899 907 2.727454 TCCCTCCATTCCTTTCCCTTTT 59.273 45.455 0.00 0.00 0.00 2.27
900 908 2.313041 CTCCCTCCATTCCTTTCCCTTT 59.687 50.000 0.00 0.00 0.00 3.11
901 909 1.925959 CTCCCTCCATTCCTTTCCCTT 59.074 52.381 0.00 0.00 0.00 3.95
902 910 1.203622 ACTCCCTCCATTCCTTTCCCT 60.204 52.381 0.00 0.00 0.00 4.20
903 911 1.299939 ACTCCCTCCATTCCTTTCCC 58.700 55.000 0.00 0.00 0.00 3.97
904 912 4.797912 AATACTCCCTCCATTCCTTTCC 57.202 45.455 0.00 0.00 0.00 3.13
905 913 8.826765 TGATATAATACTCCCTCCATTCCTTTC 58.173 37.037 0.00 0.00 0.00 2.62
906 914 8.757307 TGATATAATACTCCCTCCATTCCTTT 57.243 34.615 0.00 0.00 0.00 3.11
907 915 8.186985 TCTGATATAATACTCCCTCCATTCCTT 58.813 37.037 0.00 0.00 0.00 3.36
908 916 7.723382 TCTGATATAATACTCCCTCCATTCCT 58.277 38.462 0.00 0.00 0.00 3.36
909 917 7.979786 TCTGATATAATACTCCCTCCATTCC 57.020 40.000 0.00 0.00 0.00 3.01
910 918 8.356657 CGATCTGATATAATACTCCCTCCATTC 58.643 40.741 0.00 0.00 0.00 2.67
911 919 7.201956 GCGATCTGATATAATACTCCCTCCATT 60.202 40.741 0.00 0.00 0.00 3.16
912 920 6.266558 GCGATCTGATATAATACTCCCTCCAT 59.733 42.308 0.00 0.00 0.00 3.41
913 921 5.594725 GCGATCTGATATAATACTCCCTCCA 59.405 44.000 0.00 0.00 0.00 3.86
914 922 5.594725 TGCGATCTGATATAATACTCCCTCC 59.405 44.000 0.00 0.00 0.00 4.30
915 923 6.500041 GTGCGATCTGATATAATACTCCCTC 58.500 44.000 0.00 0.00 0.00 4.30
916 924 5.066634 CGTGCGATCTGATATAATACTCCCT 59.933 44.000 0.00 0.00 0.00 4.20
917 925 5.274718 CGTGCGATCTGATATAATACTCCC 58.725 45.833 0.00 0.00 0.00 4.30
918 926 5.274718 CCGTGCGATCTGATATAATACTCC 58.725 45.833 0.00 0.00 0.00 3.85
919 927 5.163642 ACCCGTGCGATCTGATATAATACTC 60.164 44.000 0.00 0.00 0.00 2.59
920 928 4.705507 ACCCGTGCGATCTGATATAATACT 59.294 41.667 0.00 0.00 0.00 2.12
921 929 4.995124 ACCCGTGCGATCTGATATAATAC 58.005 43.478 0.00 0.00 0.00 1.89
922 930 5.220989 GCTACCCGTGCGATCTGATATAATA 60.221 44.000 0.00 0.00 0.00 0.98
923 931 4.440250 GCTACCCGTGCGATCTGATATAAT 60.440 45.833 0.00 0.00 0.00 1.28
924 932 3.119602 GCTACCCGTGCGATCTGATATAA 60.120 47.826 0.00 0.00 0.00 0.98
1116 1127 0.535335 GGTACTCGGCCATGAAGTGA 59.465 55.000 2.24 0.00 0.00 3.41
1227 1238 0.681564 GAGAGTGGAGGAAGGCGAGA 60.682 60.000 0.00 0.00 0.00 4.04
1241 1252 4.664267 TGCCCAGGCCCTGAGAGT 62.664 66.667 13.74 0.00 41.09 3.24
1446 1457 1.671901 GGAGGTCGAGCCAGAAGAGG 61.672 65.000 11.73 0.00 40.61 3.69
2001 2012 0.963225 TGTTCGTCTTCCCGATGTCA 59.037 50.000 0.00 0.00 36.62 3.58
2073 2084 3.379372 CAGGCACATCTCCCTTGTATTTG 59.621 47.826 0.00 0.00 0.00 2.32
2274 2285 5.057843 ACGATGGATTAGACACTAGGGTA 57.942 43.478 0.00 0.00 0.00 3.69
2275 2286 3.912248 ACGATGGATTAGACACTAGGGT 58.088 45.455 0.00 0.00 0.00 4.34
2287 2322 4.487948 CACAAAATGCAGAACGATGGATT 58.512 39.130 0.00 0.00 42.27 3.01
2310 2345 3.226346 TCGGTCTATGTTCAAACTCCG 57.774 47.619 0.00 0.00 38.36 4.63
2393 2429 1.735926 TGACTGGTGTTGGGATGGTA 58.264 50.000 0.00 0.00 0.00 3.25
2394 2430 0.850100 TTGACTGGTGTTGGGATGGT 59.150 50.000 0.00 0.00 0.00 3.55
2395 2431 1.202927 ACTTGACTGGTGTTGGGATGG 60.203 52.381 0.00 0.00 0.00 3.51
2396 2432 2.276732 ACTTGACTGGTGTTGGGATG 57.723 50.000 0.00 0.00 0.00 3.51
2397 2433 3.312736 AAACTTGACTGGTGTTGGGAT 57.687 42.857 0.00 0.00 0.00 3.85
2398 2434 2.818751 AAACTTGACTGGTGTTGGGA 57.181 45.000 0.00 0.00 0.00 4.37
2399 2435 4.204012 TCTTAAACTTGACTGGTGTTGGG 58.796 43.478 0.00 0.00 0.00 4.12
2400 2436 5.828299 TTCTTAAACTTGACTGGTGTTGG 57.172 39.130 0.00 0.00 0.00 3.77
2401 2437 7.083875 TCTTTCTTAAACTTGACTGGTGTTG 57.916 36.000 0.00 0.00 0.00 3.33
2402 2438 7.393515 AGTTCTTTCTTAAACTTGACTGGTGTT 59.606 33.333 0.00 0.00 31.81 3.32
2403 2439 6.884836 AGTTCTTTCTTAAACTTGACTGGTGT 59.115 34.615 0.00 0.00 31.81 4.16
2404 2440 7.065803 TCAGTTCTTTCTTAAACTTGACTGGTG 59.934 37.037 0.00 0.00 33.53 4.17
2405 2441 7.110155 TCAGTTCTTTCTTAAACTTGACTGGT 58.890 34.615 0.00 0.00 33.53 4.00
2406 2442 7.553881 TCAGTTCTTTCTTAAACTTGACTGG 57.446 36.000 0.00 0.00 33.53 4.00
2407 2443 9.443283 CATTCAGTTCTTTCTTAAACTTGACTG 57.557 33.333 0.00 0.00 33.53 3.51
2408 2444 9.178758 ACATTCAGTTCTTTCTTAAACTTGACT 57.821 29.630 0.00 0.00 33.53 3.41
2409 2445 9.226345 CACATTCAGTTCTTTCTTAAACTTGAC 57.774 33.333 0.00 0.00 33.53 3.18
2410 2446 9.173021 TCACATTCAGTTCTTTCTTAAACTTGA 57.827 29.630 0.00 0.00 33.53 3.02
2411 2447 9.226345 GTCACATTCAGTTCTTTCTTAAACTTG 57.774 33.333 0.00 0.00 33.53 3.16
2412 2448 8.956426 TGTCACATTCAGTTCTTTCTTAAACTT 58.044 29.630 0.00 0.00 33.53 2.66
2413 2449 8.506168 TGTCACATTCAGTTCTTTCTTAAACT 57.494 30.769 0.00 0.00 36.16 2.66
2417 2453 9.554395 TGTTATGTCACATTCAGTTCTTTCTTA 57.446 29.630 0.00 0.00 0.00 2.10
2418 2454 8.345565 GTGTTATGTCACATTCAGTTCTTTCTT 58.654 33.333 0.00 0.00 38.12 2.52
2419 2455 7.498900 TGTGTTATGTCACATTCAGTTCTTTCT 59.501 33.333 0.00 0.00 42.36 2.52
2420 2456 7.639039 TGTGTTATGTCACATTCAGTTCTTTC 58.361 34.615 0.00 0.00 42.36 2.62
2421 2457 7.566760 TGTGTTATGTCACATTCAGTTCTTT 57.433 32.000 0.00 0.00 42.36 2.52
2433 2469 6.874134 GGGATGGTAGATATGTGTTATGTCAC 59.126 42.308 0.00 0.00 38.63 3.67
2434 2470 6.295067 CGGGATGGTAGATATGTGTTATGTCA 60.295 42.308 0.00 0.00 0.00 3.58
2435 2471 6.071560 TCGGGATGGTAGATATGTGTTATGTC 60.072 42.308 0.00 0.00 0.00 3.06
2436 2472 5.778241 TCGGGATGGTAGATATGTGTTATGT 59.222 40.000 0.00 0.00 0.00 2.29
2437 2473 6.100004 GTCGGGATGGTAGATATGTGTTATG 58.900 44.000 0.00 0.00 0.00 1.90
2438 2474 5.778241 TGTCGGGATGGTAGATATGTGTTAT 59.222 40.000 0.00 0.00 0.00 1.89
2439 2475 5.010314 GTGTCGGGATGGTAGATATGTGTTA 59.990 44.000 0.00 0.00 0.00 2.41
2440 2476 3.964688 TGTCGGGATGGTAGATATGTGTT 59.035 43.478 0.00 0.00 0.00 3.32
2441 2477 3.321111 GTGTCGGGATGGTAGATATGTGT 59.679 47.826 0.00 0.00 0.00 3.72
2442 2478 3.306088 GGTGTCGGGATGGTAGATATGTG 60.306 52.174 0.00 0.00 0.00 3.21
2443 2479 2.897969 GGTGTCGGGATGGTAGATATGT 59.102 50.000 0.00 0.00 0.00 2.29
2444 2480 2.094700 CGGTGTCGGGATGGTAGATATG 60.095 54.545 0.00 0.00 0.00 1.78
2445 2481 2.168496 CGGTGTCGGGATGGTAGATAT 58.832 52.381 0.00 0.00 0.00 1.63
2446 2482 1.612676 CGGTGTCGGGATGGTAGATA 58.387 55.000 0.00 0.00 0.00 1.98
2447 2483 2.426651 CGGTGTCGGGATGGTAGAT 58.573 57.895 0.00 0.00 0.00 1.98
2448 2484 3.929002 CGGTGTCGGGATGGTAGA 58.071 61.111 0.00 0.00 0.00 2.59
2530 2600 2.408271 TTGCCAGATCCAACTAGCTG 57.592 50.000 0.00 0.00 32.64 4.24
2569 2639 4.302067 TGATGAGCTTTCCCTCTAGGATT 58.698 43.478 0.00 0.00 46.94 3.01
2606 2676 7.254556 GCGATATGACTTTGTTCTGATCAATCA 60.255 37.037 0.00 5.00 35.16 2.57
2677 2748 6.893583 AGATTCCTTCAGTGTGCTAATGTAT 58.106 36.000 0.00 0.00 0.00 2.29
2678 2749 6.299805 AGATTCCTTCAGTGTGCTAATGTA 57.700 37.500 0.00 0.00 0.00 2.29
2679 2750 5.171339 AGATTCCTTCAGTGTGCTAATGT 57.829 39.130 0.00 0.00 0.00 2.71
2892 2972 1.260544 ATTTTGGTCCTTGAGCTGGC 58.739 50.000 0.00 0.00 0.00 4.85
3017 3100 2.352030 CCTCGCTGTTGATGCAAAATGT 60.352 45.455 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.