Multiple sequence alignment - TraesCS2A01G524600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G524600 chr2A 100.000 2582 0 0 1 2582 745390290 745387709 0.000000e+00 4769.0
1 TraesCS2A01G524600 chr2A 96.471 680 22 2 1905 2582 691929266 691929945 0.000000e+00 1122.0
2 TraesCS2A01G524600 chr2A 96.035 681 24 3 1905 2582 74322933 74323613 0.000000e+00 1105.0
3 TraesCS2A01G524600 chr2A 95.779 687 25 4 1899 2582 352143726 352144411 0.000000e+00 1105.0
4 TraesCS2A01G524600 chr3D 93.899 1213 71 2 694 1904 47340103 47338892 0.000000e+00 1827.0
5 TraesCS2A01G524600 chr5A 93.501 1231 71 7 677 1904 103568013 103566789 0.000000e+00 1821.0
6 TraesCS2A01G524600 chr5A 95.924 687 25 3 1899 2582 421802382 421801696 0.000000e+00 1110.0
7 TraesCS2A01G524600 chr5A 96.171 679 22 4 1907 2582 562768416 562767739 0.000000e+00 1107.0
8 TraesCS2A01G524600 chr4D 92.840 1215 79 6 694 1904 469601470 469602680 0.000000e+00 1755.0
9 TraesCS2A01G524600 chr4D 92.745 1213 82 4 694 1904 446117422 446118630 0.000000e+00 1748.0
10 TraesCS2A01G524600 chr2D 92.482 1237 77 12 677 1904 318416607 318417836 0.000000e+00 1755.0
11 TraesCS2A01G524600 chr2D 84.352 409 14 17 1 379 615381619 615381231 3.160000e-94 355.0
12 TraesCS2A01G524600 chr2D 90.000 220 6 4 297 504 615381220 615381005 1.180000e-68 270.0
13 TraesCS2A01G524600 chr2D 95.420 131 2 1 503 629 615380977 615380847 3.370000e-49 206.0
14 TraesCS2A01G524600 chr2D 100.000 32 0 0 618 649 615380838 615380807 2.770000e-05 60.2
15 TraesCS2A01G524600 chr6D 92.445 1231 87 4 677 1903 343675525 343674297 0.000000e+00 1753.0
16 TraesCS2A01G524600 chr6D 92.020 1228 92 4 677 1900 464684117 464682892 0.000000e+00 1720.0
17 TraesCS2A01G524600 chr1A 92.114 1230 91 3 677 1904 63480305 63479080 0.000000e+00 1729.0
18 TraesCS2A01G524600 chr1A 96.035 681 24 3 1905 2582 75775615 75776295 0.000000e+00 1105.0
19 TraesCS2A01G524600 chr7D 91.558 1232 96 5 677 1904 556245060 556246287 0.000000e+00 1692.0
20 TraesCS2A01G524600 chr3A 96.324 680 23 2 1905 2582 63245033 63244354 0.000000e+00 1116.0
21 TraesCS2A01G524600 chr6A 96.188 682 21 5 1905 2582 554597467 554598147 0.000000e+00 1110.0
22 TraesCS2A01G524600 chr6A 95.369 691 29 3 1894 2582 397339107 397339796 0.000000e+00 1096.0
23 TraesCS2A01G524600 chr2B 84.975 406 18 12 1 372 749800709 749800313 3.140000e-99 372.0
24 TraesCS2A01G524600 chr2B 89.252 214 9 5 297 510 749800294 749800095 3.300000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G524600 chr2A 745387709 745390290 2581 True 4769.0 4769 100.0000 1 2582 1 chr2A.!!$R1 2581
1 TraesCS2A01G524600 chr2A 691929266 691929945 679 False 1122.0 1122 96.4710 1905 2582 1 chr2A.!!$F3 677
2 TraesCS2A01G524600 chr2A 74322933 74323613 680 False 1105.0 1105 96.0350 1905 2582 1 chr2A.!!$F1 677
3 TraesCS2A01G524600 chr2A 352143726 352144411 685 False 1105.0 1105 95.7790 1899 2582 1 chr2A.!!$F2 683
4 TraesCS2A01G524600 chr3D 47338892 47340103 1211 True 1827.0 1827 93.8990 694 1904 1 chr3D.!!$R1 1210
5 TraesCS2A01G524600 chr5A 103566789 103568013 1224 True 1821.0 1821 93.5010 677 1904 1 chr5A.!!$R1 1227
6 TraesCS2A01G524600 chr5A 421801696 421802382 686 True 1110.0 1110 95.9240 1899 2582 1 chr5A.!!$R2 683
7 TraesCS2A01G524600 chr5A 562767739 562768416 677 True 1107.0 1107 96.1710 1907 2582 1 chr5A.!!$R3 675
8 TraesCS2A01G524600 chr4D 469601470 469602680 1210 False 1755.0 1755 92.8400 694 1904 1 chr4D.!!$F2 1210
9 TraesCS2A01G524600 chr4D 446117422 446118630 1208 False 1748.0 1748 92.7450 694 1904 1 chr4D.!!$F1 1210
10 TraesCS2A01G524600 chr2D 318416607 318417836 1229 False 1755.0 1755 92.4820 677 1904 1 chr2D.!!$F1 1227
11 TraesCS2A01G524600 chr2D 615380807 615381619 812 True 222.8 355 92.4430 1 649 4 chr2D.!!$R1 648
12 TraesCS2A01G524600 chr6D 343674297 343675525 1228 True 1753.0 1753 92.4450 677 1903 1 chr6D.!!$R1 1226
13 TraesCS2A01G524600 chr6D 464682892 464684117 1225 True 1720.0 1720 92.0200 677 1900 1 chr6D.!!$R2 1223
14 TraesCS2A01G524600 chr1A 63479080 63480305 1225 True 1729.0 1729 92.1140 677 1904 1 chr1A.!!$R1 1227
15 TraesCS2A01G524600 chr1A 75775615 75776295 680 False 1105.0 1105 96.0350 1905 2582 1 chr1A.!!$F1 677
16 TraesCS2A01G524600 chr7D 556245060 556246287 1227 False 1692.0 1692 91.5580 677 1904 1 chr7D.!!$F1 1227
17 TraesCS2A01G524600 chr3A 63244354 63245033 679 True 1116.0 1116 96.3240 1905 2582 1 chr3A.!!$R1 677
18 TraesCS2A01G524600 chr6A 554597467 554598147 680 False 1110.0 1110 96.1880 1905 2582 1 chr6A.!!$F2 677
19 TraesCS2A01G524600 chr6A 397339107 397339796 689 False 1096.0 1096 95.3690 1894 2582 1 chr6A.!!$F1 688
20 TraesCS2A01G524600 chr2B 749800095 749800709 614 True 313.5 372 87.1135 1 510 2 chr2B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.034089 GTGGTGGGGAATTGGAGGAG 60.034 60.0 0.0 0.0 0.00 3.69 F
229 230 0.034380 AGTCTACTGCGGGTCAGCTA 60.034 55.0 0.0 0.0 46.76 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1747 0.670546 GCTTGTAGAACTGGCGCTCA 60.671 55.000 7.64 2.39 0.00 4.26 R
1892 2355 1.072505 ACCGACAGCGACCCATTTT 59.927 52.632 0.00 0.00 40.82 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.908081 GCGAGCCCATGCCCATTG 61.908 66.667 0.00 0.00 38.69 2.82
65 66 3.443045 CCCATTGCCGGCTGACAC 61.443 66.667 29.70 0.00 0.00 3.67
66 67 3.443045 CCATTGCCGGCTGACACC 61.443 66.667 29.70 0.00 0.00 4.16
73 74 4.293648 CGGCTGACACCGTGTCCA 62.294 66.667 25.39 14.19 46.40 4.02
74 75 2.347490 GGCTGACACCGTGTCCAT 59.653 61.111 25.39 0.00 46.40 3.41
75 76 2.034879 GGCTGACACCGTGTCCATG 61.035 63.158 25.39 17.08 46.40 3.66
76 77 2.034879 GCTGACACCGTGTCCATGG 61.035 63.158 25.39 4.97 46.40 3.66
77 78 2.031919 TGACACCGTGTCCATGGC 59.968 61.111 25.39 2.72 46.40 4.40
78 79 3.118454 GACACCGTGTCCATGGCG 61.118 66.667 19.30 4.92 41.37 5.69
113 114 4.504916 CGCGTGCAGGGAGAGGAG 62.505 72.222 8.72 0.00 34.27 3.69
114 115 4.154347 GCGTGCAGGGAGAGGAGG 62.154 72.222 8.72 0.00 0.00 4.30
115 116 2.363018 CGTGCAGGGAGAGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
116 117 2.422231 CGTGCAGGGAGAGGAGGAG 61.422 68.421 0.00 0.00 0.00 3.69
117 118 1.305718 GTGCAGGGAGAGGAGGAGT 60.306 63.158 0.00 0.00 0.00 3.85
118 119 1.000993 TGCAGGGAGAGGAGGAGTC 59.999 63.158 0.00 0.00 0.00 3.36
119 120 1.760480 GCAGGGAGAGGAGGAGTCC 60.760 68.421 0.00 0.00 44.33 3.85
128 129 2.495809 GGAGGAGTCCGAGGAAGAC 58.504 63.158 2.76 0.00 31.37 3.01
129 130 0.323542 GGAGGAGTCCGAGGAAGACA 60.324 60.000 2.76 0.00 36.68 3.41
130 131 1.686741 GGAGGAGTCCGAGGAAGACAT 60.687 57.143 2.76 0.00 36.68 3.06
131 132 1.407258 GAGGAGTCCGAGGAAGACATG 59.593 57.143 2.76 0.00 36.68 3.21
132 133 0.461961 GGAGTCCGAGGAAGACATGG 59.538 60.000 0.00 0.00 36.68 3.66
133 134 1.475403 GAGTCCGAGGAAGACATGGA 58.525 55.000 0.00 0.00 36.68 3.41
134 135 1.407258 GAGTCCGAGGAAGACATGGAG 59.593 57.143 0.00 0.00 36.68 3.86
135 136 0.461961 GTCCGAGGAAGACATGGAGG 59.538 60.000 0.00 0.00 34.27 4.30
136 137 0.335019 TCCGAGGAAGACATGGAGGA 59.665 55.000 0.00 0.00 0.00 3.71
137 138 0.749649 CCGAGGAAGACATGGAGGAG 59.250 60.000 0.00 0.00 0.00 3.69
138 139 1.686428 CCGAGGAAGACATGGAGGAGA 60.686 57.143 0.00 0.00 0.00 3.71
139 140 1.680735 CGAGGAAGACATGGAGGAGAG 59.319 57.143 0.00 0.00 0.00 3.20
140 141 2.745968 GAGGAAGACATGGAGGAGAGT 58.254 52.381 0.00 0.00 0.00 3.24
141 142 2.693074 GAGGAAGACATGGAGGAGAGTC 59.307 54.545 0.00 0.00 0.00 3.36
142 143 2.043664 AGGAAGACATGGAGGAGAGTCA 59.956 50.000 0.00 0.00 33.56 3.41
143 144 3.037549 GGAAGACATGGAGGAGAGTCAT 58.962 50.000 0.00 0.00 33.56 3.06
144 145 3.454082 GGAAGACATGGAGGAGAGTCATT 59.546 47.826 0.00 0.00 33.56 2.57
145 146 4.651503 GGAAGACATGGAGGAGAGTCATTA 59.348 45.833 0.00 0.00 33.56 1.90
146 147 5.306678 GGAAGACATGGAGGAGAGTCATTAT 59.693 44.000 0.00 0.00 33.56 1.28
147 148 5.804944 AGACATGGAGGAGAGTCATTATG 57.195 43.478 0.00 0.00 33.56 1.90
148 149 5.462240 AGACATGGAGGAGAGTCATTATGA 58.538 41.667 0.00 0.00 33.56 2.15
149 150 5.539574 AGACATGGAGGAGAGTCATTATGAG 59.460 44.000 0.00 0.00 33.56 2.90
150 151 4.040217 ACATGGAGGAGAGTCATTATGAGC 59.960 45.833 0.00 0.00 0.00 4.26
151 152 2.625314 TGGAGGAGAGTCATTATGAGCG 59.375 50.000 0.00 0.00 0.00 5.03
152 153 2.029470 GGAGGAGAGTCATTATGAGCGG 60.029 54.545 0.00 0.00 0.00 5.52
153 154 2.887783 GAGGAGAGTCATTATGAGCGGA 59.112 50.000 0.00 0.00 0.00 5.54
154 155 3.300388 AGGAGAGTCATTATGAGCGGAA 58.700 45.455 0.00 0.00 0.00 4.30
155 156 3.320541 AGGAGAGTCATTATGAGCGGAAG 59.679 47.826 0.00 0.00 0.00 3.46
156 157 3.319405 GGAGAGTCATTATGAGCGGAAGA 59.681 47.826 0.00 0.00 0.00 2.87
157 158 4.202161 GGAGAGTCATTATGAGCGGAAGAA 60.202 45.833 0.00 0.00 0.00 2.52
158 159 4.942852 AGAGTCATTATGAGCGGAAGAAG 58.057 43.478 0.00 0.00 0.00 2.85
159 160 4.054671 GAGTCATTATGAGCGGAAGAAGG 58.945 47.826 0.00 0.00 0.00 3.46
160 161 3.706594 AGTCATTATGAGCGGAAGAAGGA 59.293 43.478 0.00 0.00 0.00 3.36
161 162 4.162320 AGTCATTATGAGCGGAAGAAGGAA 59.838 41.667 0.00 0.00 0.00 3.36
162 163 4.876107 GTCATTATGAGCGGAAGAAGGAAA 59.124 41.667 0.00 0.00 0.00 3.13
163 164 5.529060 GTCATTATGAGCGGAAGAAGGAAAT 59.471 40.000 0.00 0.00 0.00 2.17
164 165 5.528690 TCATTATGAGCGGAAGAAGGAAATG 59.471 40.000 0.00 0.00 0.00 2.32
165 166 3.634397 ATGAGCGGAAGAAGGAAATGA 57.366 42.857 0.00 0.00 0.00 2.57
166 167 3.417069 TGAGCGGAAGAAGGAAATGAA 57.583 42.857 0.00 0.00 0.00 2.57
167 168 3.074412 TGAGCGGAAGAAGGAAATGAAC 58.926 45.455 0.00 0.00 0.00 3.18
168 169 3.074412 GAGCGGAAGAAGGAAATGAACA 58.926 45.455 0.00 0.00 0.00 3.18
169 170 3.077359 AGCGGAAGAAGGAAATGAACAG 58.923 45.455 0.00 0.00 0.00 3.16
170 171 2.162408 GCGGAAGAAGGAAATGAACAGG 59.838 50.000 0.00 0.00 0.00 4.00
171 172 2.749621 CGGAAGAAGGAAATGAACAGGG 59.250 50.000 0.00 0.00 0.00 4.45
172 173 3.767711 GGAAGAAGGAAATGAACAGGGT 58.232 45.455 0.00 0.00 0.00 4.34
173 174 4.564821 CGGAAGAAGGAAATGAACAGGGTA 60.565 45.833 0.00 0.00 0.00 3.69
174 175 4.700692 GGAAGAAGGAAATGAACAGGGTAC 59.299 45.833 0.00 0.00 0.00 3.34
175 176 3.939066 AGAAGGAAATGAACAGGGTACG 58.061 45.455 0.00 0.00 0.00 3.67
176 177 2.109425 AGGAAATGAACAGGGTACGC 57.891 50.000 0.77 0.77 0.00 4.42
177 178 0.725117 GGAAATGAACAGGGTACGCG 59.275 55.000 3.53 3.53 0.00 6.01
178 179 1.435577 GAAATGAACAGGGTACGCGT 58.564 50.000 19.17 19.17 0.00 6.01
179 180 1.127951 GAAATGAACAGGGTACGCGTG 59.872 52.381 24.59 7.13 0.00 5.34
180 181 0.672401 AATGAACAGGGTACGCGTGG 60.672 55.000 24.59 8.53 0.00 4.94
181 182 1.823169 ATGAACAGGGTACGCGTGGT 61.823 55.000 24.59 1.95 0.00 4.16
182 183 2.025418 GAACAGGGTACGCGTGGTG 61.025 63.158 24.59 15.49 0.00 4.17
183 184 3.524648 AACAGGGTACGCGTGGTGG 62.525 63.158 24.59 10.05 0.00 4.61
184 185 4.752879 CAGGGTACGCGTGGTGGG 62.753 72.222 24.59 4.72 0.00 4.61
187 188 4.006357 GGTACGCGTGGTGGGGAA 62.006 66.667 24.59 0.00 34.15 3.97
188 189 2.266689 GTACGCGTGGTGGGGAAT 59.733 61.111 24.59 0.00 34.15 3.01
189 190 1.376295 GTACGCGTGGTGGGGAATT 60.376 57.895 24.59 0.00 34.15 2.17
190 191 1.376166 TACGCGTGGTGGGGAATTG 60.376 57.895 24.59 0.00 34.15 2.32
191 192 2.806503 TACGCGTGGTGGGGAATTGG 62.807 60.000 24.59 0.00 34.15 3.16
192 193 2.034999 GCGTGGTGGGGAATTGGA 59.965 61.111 0.00 0.00 0.00 3.53
193 194 2.046285 GCGTGGTGGGGAATTGGAG 61.046 63.158 0.00 0.00 0.00 3.86
194 195 1.378514 CGTGGTGGGGAATTGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
195 196 1.847798 CGTGGTGGGGAATTGGAGGA 61.848 60.000 0.00 0.00 0.00 3.71
196 197 0.034089 GTGGTGGGGAATTGGAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
197 198 0.477597 TGGTGGGGAATTGGAGGAGT 60.478 55.000 0.00 0.00 0.00 3.85
198 199 1.203505 TGGTGGGGAATTGGAGGAGTA 60.204 52.381 0.00 0.00 0.00 2.59
199 200 1.920351 GGTGGGGAATTGGAGGAGTAA 59.080 52.381 0.00 0.00 0.00 2.24
200 201 2.092375 GGTGGGGAATTGGAGGAGTAAG 60.092 54.545 0.00 0.00 0.00 2.34
201 202 2.844348 GTGGGGAATTGGAGGAGTAAGA 59.156 50.000 0.00 0.00 0.00 2.10
202 203 3.459969 GTGGGGAATTGGAGGAGTAAGAT 59.540 47.826 0.00 0.00 0.00 2.40
203 204 4.079730 GTGGGGAATTGGAGGAGTAAGATT 60.080 45.833 0.00 0.00 0.00 2.40
204 205 4.079787 TGGGGAATTGGAGGAGTAAGATTG 60.080 45.833 0.00 0.00 0.00 2.67
205 206 4.166144 GGGGAATTGGAGGAGTAAGATTGA 59.834 45.833 0.00 0.00 0.00 2.57
206 207 5.163045 GGGGAATTGGAGGAGTAAGATTGAT 60.163 44.000 0.00 0.00 0.00 2.57
207 208 5.767168 GGGAATTGGAGGAGTAAGATTGATG 59.233 44.000 0.00 0.00 0.00 3.07
208 209 5.240403 GGAATTGGAGGAGTAAGATTGATGC 59.760 44.000 0.00 0.00 0.00 3.91
209 210 4.842531 TTGGAGGAGTAAGATTGATGCA 57.157 40.909 0.00 0.00 0.00 3.96
210 211 4.842531 TGGAGGAGTAAGATTGATGCAA 57.157 40.909 0.00 0.00 0.00 4.08
211 212 4.774124 TGGAGGAGTAAGATTGATGCAAG 58.226 43.478 0.00 0.00 0.00 4.01
212 213 4.225942 TGGAGGAGTAAGATTGATGCAAGT 59.774 41.667 0.00 0.00 0.00 3.16
213 214 4.813697 GGAGGAGTAAGATTGATGCAAGTC 59.186 45.833 0.00 0.00 0.00 3.01
214 215 5.396213 GGAGGAGTAAGATTGATGCAAGTCT 60.396 44.000 0.00 0.00 0.00 3.24
215 216 6.183360 GGAGGAGTAAGATTGATGCAAGTCTA 60.183 42.308 0.00 0.00 0.00 2.59
216 217 6.578023 AGGAGTAAGATTGATGCAAGTCTAC 58.422 40.000 0.00 0.00 0.00 2.59
217 218 6.382570 AGGAGTAAGATTGATGCAAGTCTACT 59.617 38.462 0.00 0.00 0.00 2.57
218 219 6.478344 GGAGTAAGATTGATGCAAGTCTACTG 59.522 42.308 0.00 0.00 0.00 2.74
219 220 5.814705 AGTAAGATTGATGCAAGTCTACTGC 59.185 40.000 0.00 0.00 0.00 4.40
220 221 3.193263 AGATTGATGCAAGTCTACTGCG 58.807 45.455 0.00 0.00 0.00 5.18
221 222 1.725641 TTGATGCAAGTCTACTGCGG 58.274 50.000 0.00 0.00 0.00 5.69
222 223 0.108186 TGATGCAAGTCTACTGCGGG 60.108 55.000 0.00 0.00 0.00 6.13
223 224 0.108138 GATGCAAGTCTACTGCGGGT 60.108 55.000 0.00 0.00 0.00 5.28
224 225 0.108138 ATGCAAGTCTACTGCGGGTC 60.108 55.000 0.00 0.00 0.00 4.46
225 226 1.292223 GCAAGTCTACTGCGGGTCA 59.708 57.895 0.00 0.00 0.00 4.02
227 228 0.737715 CAAGTCTACTGCGGGTCAGC 60.738 60.000 0.00 0.00 46.76 4.26
228 229 0.900647 AAGTCTACTGCGGGTCAGCT 60.901 55.000 0.00 0.00 46.76 4.24
229 230 0.034380 AGTCTACTGCGGGTCAGCTA 60.034 55.000 0.00 0.00 46.76 3.32
230 231 1.033574 GTCTACTGCGGGTCAGCTAT 58.966 55.000 0.00 0.00 46.76 2.97
231 232 1.032794 TCTACTGCGGGTCAGCTATG 58.967 55.000 0.00 0.00 46.76 2.23
232 233 1.032794 CTACTGCGGGTCAGCTATGA 58.967 55.000 0.00 0.00 46.76 2.15
233 234 1.615883 CTACTGCGGGTCAGCTATGAT 59.384 52.381 0.00 0.00 46.76 2.45
234 235 0.390860 ACTGCGGGTCAGCTATGATC 59.609 55.000 0.00 0.00 46.76 2.92
235 236 0.390492 CTGCGGGTCAGCTATGATCA 59.610 55.000 0.00 0.00 38.40 2.92
236 237 0.104855 TGCGGGTCAGCTATGATCAC 59.895 55.000 0.00 0.00 38.40 3.06
237 238 0.104855 GCGGGTCAGCTATGATCACA 59.895 55.000 0.00 0.00 38.40 3.58
238 239 1.270518 GCGGGTCAGCTATGATCACAT 60.271 52.381 0.00 0.00 38.40 3.21
239 240 2.808202 GCGGGTCAGCTATGATCACATT 60.808 50.000 0.00 0.00 38.40 2.71
240 241 3.062763 CGGGTCAGCTATGATCACATTC 58.937 50.000 0.00 0.00 38.40 2.67
241 242 3.406764 GGGTCAGCTATGATCACATTCC 58.593 50.000 0.00 0.00 38.40 3.01
242 243 3.181451 GGGTCAGCTATGATCACATTCCA 60.181 47.826 0.00 0.00 38.40 3.53
243 244 4.063689 GGTCAGCTATGATCACATTCCAG 58.936 47.826 0.00 0.00 36.49 3.86
244 245 4.063689 GTCAGCTATGATCACATTCCAGG 58.936 47.826 0.00 0.00 37.87 4.45
245 246 2.812591 CAGCTATGATCACATTCCAGGC 59.187 50.000 0.00 0.00 37.87 4.85
246 247 2.157738 GCTATGATCACATTCCAGGCC 58.842 52.381 0.00 0.00 37.87 5.19
247 248 2.420642 CTATGATCACATTCCAGGCCG 58.579 52.381 0.00 0.00 37.87 6.13
248 249 0.820891 ATGATCACATTCCAGGCCGC 60.821 55.000 0.00 0.00 32.21 6.53
249 250 1.451927 GATCACATTCCAGGCCGCA 60.452 57.895 0.00 0.00 0.00 5.69
250 251 1.442526 GATCACATTCCAGGCCGCAG 61.443 60.000 0.00 0.00 0.00 5.18
263 264 4.760047 CGCAGGTCAACGAGGGGG 62.760 72.222 0.00 0.00 0.00 5.40
264 265 3.319198 GCAGGTCAACGAGGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
265 266 2.670148 GCAGGTCAACGAGGGGGAT 61.670 63.158 0.00 0.00 0.00 3.85
266 267 1.221840 CAGGTCAACGAGGGGGATG 59.778 63.158 0.00 0.00 0.00 3.51
267 268 2.124695 GGTCAACGAGGGGGATGC 60.125 66.667 0.00 0.00 0.00 3.91
268 269 2.670148 GGTCAACGAGGGGGATGCT 61.670 63.158 0.00 0.00 0.00 3.79
269 270 1.153349 GTCAACGAGGGGGATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
270 271 1.306141 TCAACGAGGGGGATGCTCT 60.306 57.895 0.00 0.00 0.00 4.09
271 272 0.909610 TCAACGAGGGGGATGCTCTT 60.910 55.000 0.00 0.00 0.00 2.85
272 273 0.745845 CAACGAGGGGGATGCTCTTG 60.746 60.000 0.00 0.00 0.00 3.02
273 274 1.915078 AACGAGGGGGATGCTCTTGG 61.915 60.000 0.00 0.00 0.00 3.61
274 275 2.922234 GAGGGGGATGCTCTTGGG 59.078 66.667 0.00 0.00 0.00 4.12
275 276 3.424105 AGGGGGATGCTCTTGGGC 61.424 66.667 0.00 0.00 0.00 5.36
276 277 3.424105 GGGGGATGCTCTTGGGCT 61.424 66.667 0.00 0.00 0.00 5.19
277 278 2.123982 GGGGATGCTCTTGGGCTG 60.124 66.667 0.00 0.00 0.00 4.85
278 279 2.679716 GGGATGCTCTTGGGCTGT 59.320 61.111 0.00 0.00 0.00 4.40
279 280 1.751927 GGGATGCTCTTGGGCTGTG 60.752 63.158 0.00 0.00 0.00 3.66
280 281 1.751927 GGATGCTCTTGGGCTGTGG 60.752 63.158 0.00 0.00 0.00 4.17
281 282 1.751927 GATGCTCTTGGGCTGTGGG 60.752 63.158 0.00 0.00 0.00 4.61
282 283 3.951769 ATGCTCTTGGGCTGTGGGC 62.952 63.158 0.00 0.00 40.90 5.36
292 293 4.007644 CTGTGGGCGCACTCCTCA 62.008 66.667 30.85 12.48 0.00 3.86
293 294 4.314440 TGTGGGCGCACTCCTCAC 62.314 66.667 30.85 0.00 0.00 3.51
294 295 4.314440 GTGGGCGCACTCCTCACA 62.314 66.667 25.28 0.00 31.71 3.58
295 296 4.007644 TGGGCGCACTCCTCACAG 62.008 66.667 12.74 0.00 0.00 3.66
296 297 3.695606 GGGCGCACTCCTCACAGA 61.696 66.667 10.83 0.00 0.00 3.41
297 298 2.125753 GGCGCACTCCTCACAGAG 60.126 66.667 10.83 0.00 39.91 3.35
299 300 1.445238 GCGCACTCCTCACAGAGTC 60.445 63.158 0.30 0.00 45.38 3.36
300 301 1.872197 GCGCACTCCTCACAGAGTCT 61.872 60.000 0.30 0.00 45.38 3.24
301 302 0.109365 CGCACTCCTCACAGAGTCTG 60.109 60.000 18.83 18.83 45.38 3.51
302 303 0.965439 GCACTCCTCACAGAGTCTGT 59.035 55.000 20.34 20.34 45.38 3.41
310 311 2.220953 ACAGAGTCTGTGCCAACCA 58.779 52.632 24.93 0.00 43.63 3.67
311 312 0.546122 ACAGAGTCTGTGCCAACCAA 59.454 50.000 24.93 0.00 43.63 3.67
312 313 1.143684 ACAGAGTCTGTGCCAACCAAT 59.856 47.619 24.93 0.00 43.63 3.16
313 314 1.538512 CAGAGTCTGTGCCAACCAATG 59.461 52.381 12.28 0.00 0.00 2.82
314 315 1.421268 AGAGTCTGTGCCAACCAATGA 59.579 47.619 0.00 0.00 0.00 2.57
315 316 2.040813 AGAGTCTGTGCCAACCAATGAT 59.959 45.455 0.00 0.00 0.00 2.45
316 317 3.264193 AGAGTCTGTGCCAACCAATGATA 59.736 43.478 0.00 0.00 0.00 2.15
317 318 4.009675 GAGTCTGTGCCAACCAATGATAA 58.990 43.478 0.00 0.00 0.00 1.75
318 319 3.758554 AGTCTGTGCCAACCAATGATAAC 59.241 43.478 0.00 0.00 0.00 1.89
319 320 3.505680 GTCTGTGCCAACCAATGATAACA 59.494 43.478 0.00 0.00 0.00 2.41
320 321 4.158394 GTCTGTGCCAACCAATGATAACAT 59.842 41.667 0.00 0.00 38.50 2.71
321 322 4.771577 TCTGTGCCAACCAATGATAACATT 59.228 37.500 0.00 0.00 46.10 2.71
346 347 9.577110 TTGTCTTACTATCATTTAACTACACCG 57.423 33.333 0.00 0.00 0.00 4.94
347 348 8.959548 TGTCTTACTATCATTTAACTACACCGA 58.040 33.333 0.00 0.00 0.00 4.69
348 349 9.448294 GTCTTACTATCATTTAACTACACCGAG 57.552 37.037 0.00 0.00 0.00 4.63
349 350 9.399797 TCTTACTATCATTTAACTACACCGAGA 57.600 33.333 0.00 0.00 0.00 4.04
360 361 9.525409 TTTAACTACACCGAGAAATAGAATAGC 57.475 33.333 0.00 0.00 0.00 2.97
361 362 6.963083 ACTACACCGAGAAATAGAATAGCT 57.037 37.500 0.00 0.00 0.00 3.32
362 363 6.740110 ACTACACCGAGAAATAGAATAGCTG 58.260 40.000 0.00 0.00 0.00 4.24
363 364 5.599999 ACACCGAGAAATAGAATAGCTGT 57.400 39.130 0.00 0.00 0.00 4.40
364 365 6.710597 ACACCGAGAAATAGAATAGCTGTA 57.289 37.500 0.00 0.00 0.00 2.74
365 366 6.505272 ACACCGAGAAATAGAATAGCTGTAC 58.495 40.000 0.00 0.00 0.00 2.90
366 367 5.625721 CACCGAGAAATAGAATAGCTGTACG 59.374 44.000 0.00 0.00 0.00 3.67
367 368 5.530171 ACCGAGAAATAGAATAGCTGTACGA 59.470 40.000 0.00 0.00 0.00 3.43
368 369 6.039047 ACCGAGAAATAGAATAGCTGTACGAA 59.961 38.462 0.00 0.00 0.00 3.85
369 370 7.085116 CCGAGAAATAGAATAGCTGTACGAAT 58.915 38.462 0.00 0.00 0.00 3.34
370 371 8.235226 CCGAGAAATAGAATAGCTGTACGAATA 58.765 37.037 0.00 0.00 0.00 1.75
371 372 9.053135 CGAGAAATAGAATAGCTGTACGAATAC 57.947 37.037 0.00 0.00 0.00 1.89
377 378 6.660722 AGAATAGCTGTACGAATACTCTTCG 58.339 40.000 0.00 5.87 46.36 3.79
386 387 4.563524 CGAATACTCTTCGTTGGTCAAC 57.436 45.455 3.91 3.91 37.18 3.18
387 388 3.985279 CGAATACTCTTCGTTGGTCAACA 59.015 43.478 13.35 0.00 41.20 3.33
388 389 4.143389 CGAATACTCTTCGTTGGTCAACAC 60.143 45.833 13.35 0.00 41.20 3.32
389 390 2.981859 ACTCTTCGTTGGTCAACACT 57.018 45.000 13.35 0.00 41.20 3.55
390 391 2.550978 ACTCTTCGTTGGTCAACACTG 58.449 47.619 13.35 3.50 41.20 3.66
391 392 1.867233 CTCTTCGTTGGTCAACACTGG 59.133 52.381 13.35 0.00 41.20 4.00
392 393 1.483004 TCTTCGTTGGTCAACACTGGA 59.517 47.619 13.35 0.91 41.20 3.86
393 394 1.597663 CTTCGTTGGTCAACACTGGAC 59.402 52.381 13.35 0.00 41.20 4.02
394 395 0.528901 TCGTTGGTCAACACTGGACG 60.529 55.000 13.35 0.00 41.20 4.79
395 396 1.647084 GTTGGTCAACACTGGACGC 59.353 57.895 8.77 0.00 40.84 5.19
396 397 0.814010 GTTGGTCAACACTGGACGCT 60.814 55.000 8.77 0.00 40.84 5.07
397 398 0.107410 TTGGTCAACACTGGACGCTT 60.107 50.000 0.00 0.00 36.12 4.68
398 399 0.813610 TGGTCAACACTGGACGCTTG 60.814 55.000 0.00 0.00 36.12 4.01
399 400 1.507141 GGTCAACACTGGACGCTTGG 61.507 60.000 0.00 0.00 36.12 3.61
400 401 1.227823 TCAACACTGGACGCTTGGG 60.228 57.895 0.00 0.00 0.00 4.12
401 402 2.113139 AACACTGGACGCTTGGGG 59.887 61.111 0.00 0.00 0.00 4.96
402 403 2.448582 AACACTGGACGCTTGGGGA 61.449 57.895 0.00 0.00 0.00 4.81
403 404 1.779061 AACACTGGACGCTTGGGGAT 61.779 55.000 0.00 0.00 0.00 3.85
404 405 1.746615 CACTGGACGCTTGGGGATG 60.747 63.158 0.00 0.00 0.00 3.51
405 406 1.918293 ACTGGACGCTTGGGGATGA 60.918 57.895 0.00 0.00 0.00 2.92
406 407 1.450312 CTGGACGCTTGGGGATGAC 60.450 63.158 0.00 0.00 0.00 3.06
407 408 2.511600 GGACGCTTGGGGATGACG 60.512 66.667 0.00 0.00 0.00 4.35
408 409 2.577059 GACGCTTGGGGATGACGA 59.423 61.111 0.00 0.00 0.00 4.20
409 410 1.079405 GACGCTTGGGGATGACGAA 60.079 57.895 0.00 0.00 0.00 3.85
410 411 0.672401 GACGCTTGGGGATGACGAAA 60.672 55.000 0.00 0.00 0.00 3.46
411 412 0.673644 ACGCTTGGGGATGACGAAAG 60.674 55.000 0.00 0.00 0.00 2.62
426 427 2.354821 ACGAAAGTTTGTTCTGAGGTGC 59.645 45.455 0.00 0.00 46.40 5.01
427 428 2.614057 CGAAAGTTTGTTCTGAGGTGCT 59.386 45.455 0.00 0.00 0.00 4.40
428 429 3.303395 CGAAAGTTTGTTCTGAGGTGCTC 60.303 47.826 0.00 0.00 0.00 4.26
429 430 3.281727 AAGTTTGTTCTGAGGTGCTCA 57.718 42.857 0.00 0.00 38.25 4.26
430 431 3.498774 AGTTTGTTCTGAGGTGCTCAT 57.501 42.857 0.00 0.00 39.92 2.90
431 432 3.825328 AGTTTGTTCTGAGGTGCTCATT 58.175 40.909 0.00 0.00 39.92 2.57
432 433 4.210331 AGTTTGTTCTGAGGTGCTCATTT 58.790 39.130 0.00 0.00 39.92 2.32
433 434 4.037208 AGTTTGTTCTGAGGTGCTCATTTG 59.963 41.667 0.00 0.00 39.92 2.32
434 435 2.507484 TGTTCTGAGGTGCTCATTTGG 58.493 47.619 0.00 0.00 39.92 3.28
435 436 2.106338 TGTTCTGAGGTGCTCATTTGGA 59.894 45.455 0.00 0.00 39.92 3.53
436 437 3.149196 GTTCTGAGGTGCTCATTTGGAA 58.851 45.455 0.00 0.00 39.92 3.53
437 438 3.726557 TCTGAGGTGCTCATTTGGAAT 57.273 42.857 0.00 0.00 39.92 3.01
438 439 4.038271 TCTGAGGTGCTCATTTGGAATT 57.962 40.909 0.00 0.00 39.92 2.17
439 440 4.410099 TCTGAGGTGCTCATTTGGAATTT 58.590 39.130 0.00 0.00 39.92 1.82
440 441 4.460382 TCTGAGGTGCTCATTTGGAATTTC 59.540 41.667 0.00 0.00 39.92 2.17
441 442 4.151121 TGAGGTGCTCATTTGGAATTTCA 58.849 39.130 0.00 0.00 35.39 2.69
442 443 4.588106 TGAGGTGCTCATTTGGAATTTCAA 59.412 37.500 0.00 0.00 35.39 2.69
443 444 5.070180 TGAGGTGCTCATTTGGAATTTCAAA 59.930 36.000 14.25 14.25 40.37 2.69
444 445 5.927819 AGGTGCTCATTTGGAATTTCAAAA 58.072 33.333 15.78 1.49 39.64 2.44
445 446 6.536447 AGGTGCTCATTTGGAATTTCAAAAT 58.464 32.000 15.78 6.01 39.64 1.82
446 447 6.652062 AGGTGCTCATTTGGAATTTCAAAATC 59.348 34.615 15.78 0.00 39.64 2.17
447 448 6.652062 GGTGCTCATTTGGAATTTCAAAATCT 59.348 34.615 15.78 0.00 39.64 2.40
448 449 7.173735 GGTGCTCATTTGGAATTTCAAAATCTT 59.826 33.333 15.78 0.00 39.64 2.40
449 450 8.013378 GTGCTCATTTGGAATTTCAAAATCTTG 58.987 33.333 15.78 9.64 39.64 3.02
450 451 7.019418 GCTCATTTGGAATTTCAAAATCTTGC 58.981 34.615 15.78 11.62 39.64 4.01
451 452 7.308109 GCTCATTTGGAATTTCAAAATCTTGCA 60.308 33.333 15.78 0.86 39.64 4.08
452 453 8.447924 TCATTTGGAATTTCAAAATCTTGCAA 57.552 26.923 15.78 0.00 39.64 4.08
453 454 8.900781 TCATTTGGAATTTCAAAATCTTGCAAA 58.099 25.926 15.78 4.67 39.64 3.68
454 455 9.685828 CATTTGGAATTTCAAAATCTTGCAAAT 57.314 25.926 15.78 8.02 37.50 2.32
456 457 9.517609 TTTGGAATTTCAAAATCTTGCAAATTG 57.482 25.926 9.56 4.25 35.17 2.32
457 458 7.649973 TGGAATTTCAAAATCTTGCAAATTGG 58.350 30.769 0.00 0.00 35.17 3.16
458 459 7.501559 TGGAATTTCAAAATCTTGCAAATTGGA 59.498 29.630 0.00 0.00 35.17 3.53
459 460 7.804600 GGAATTTCAAAATCTTGCAAATTGGAC 59.195 33.333 0.00 0.00 35.17 4.02
460 461 7.804843 ATTTCAAAATCTTGCAAATTGGACA 57.195 28.000 0.00 0.00 32.14 4.02
461 462 7.804843 TTTCAAAATCTTGCAAATTGGACAT 57.195 28.000 0.00 0.00 32.14 3.06
462 463 8.899427 TTTCAAAATCTTGCAAATTGGACATA 57.101 26.923 0.00 0.00 32.14 2.29
463 464 8.899427 TTCAAAATCTTGCAAATTGGACATAA 57.101 26.923 0.00 0.00 32.14 1.90
464 465 9.504708 TTCAAAATCTTGCAAATTGGACATAAT 57.495 25.926 0.00 0.00 32.14 1.28
469 470 9.768662 AATCTTGCAAATTGGACATAATAATCC 57.231 29.630 0.00 0.00 35.37 3.01
470 471 7.424803 TCTTGCAAATTGGACATAATAATCCG 58.575 34.615 0.00 0.00 37.87 4.18
471 472 6.951062 TGCAAATTGGACATAATAATCCGA 57.049 33.333 0.00 0.00 37.87 4.55
472 473 7.523293 TGCAAATTGGACATAATAATCCGAT 57.477 32.000 0.00 0.00 40.33 4.18
473 474 7.369607 TGCAAATTGGACATAATAATCCGATG 58.630 34.615 0.00 0.00 38.84 3.84
474 475 7.230309 TGCAAATTGGACATAATAATCCGATGA 59.770 33.333 0.00 0.00 38.84 2.92
475 476 8.246180 GCAAATTGGACATAATAATCCGATGAT 58.754 33.333 0.00 0.00 38.84 2.45
479 480 9.784531 ATTGGACATAATAATCCGATGATATCC 57.215 33.333 0.00 0.00 37.66 2.59
480 481 7.735917 TGGACATAATAATCCGATGATATCCC 58.264 38.462 0.00 0.00 37.87 3.85
481 482 6.868864 GGACATAATAATCCGATGATATCCCG 59.131 42.308 0.00 4.07 0.00 5.14
482 483 7.361457 ACATAATAATCCGATGATATCCCGT 57.639 36.000 11.86 0.00 0.00 5.28
483 484 7.210174 ACATAATAATCCGATGATATCCCGTG 58.790 38.462 11.86 5.48 0.00 4.94
484 485 4.672587 ATAATCCGATGATATCCCGTGG 57.327 45.455 11.86 4.55 0.00 4.94
485 486 1.938585 ATCCGATGATATCCCGTGGT 58.061 50.000 11.86 0.70 0.00 4.16
486 487 1.712056 TCCGATGATATCCCGTGGTT 58.288 50.000 11.86 0.00 0.00 3.67
487 488 1.343142 TCCGATGATATCCCGTGGTTG 59.657 52.381 11.86 0.07 0.00 3.77
488 489 1.148310 CGATGATATCCCGTGGTTGC 58.852 55.000 0.00 0.00 0.00 4.17
489 490 1.523758 GATGATATCCCGTGGTTGCC 58.476 55.000 0.00 0.00 0.00 4.52
490 491 0.250295 ATGATATCCCGTGGTTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
491 492 1.597027 GATATCCCGTGGTTGCCGG 60.597 63.158 0.00 0.00 45.07 6.13
492 493 2.319890 GATATCCCGTGGTTGCCGGT 62.320 60.000 1.90 0.00 43.98 5.28
493 494 1.049855 ATATCCCGTGGTTGCCGGTA 61.050 55.000 1.90 0.00 43.98 4.02
494 495 1.049855 TATCCCGTGGTTGCCGGTAT 61.050 55.000 1.90 0.00 43.98 2.73
495 496 2.319890 ATCCCGTGGTTGCCGGTATC 62.320 60.000 1.90 0.00 43.98 2.24
496 497 2.888534 CCGTGGTTGCCGGTATCG 60.889 66.667 1.90 1.67 40.59 2.92
506 507 3.207354 CGGTATCGGTGAGCCAGT 58.793 61.111 0.00 0.00 34.09 4.00
507 508 1.065928 CGGTATCGGTGAGCCAGTC 59.934 63.158 0.00 0.00 34.09 3.51
508 509 1.442148 GGTATCGGTGAGCCAGTCC 59.558 63.158 0.00 0.00 34.09 3.85
509 510 1.327690 GGTATCGGTGAGCCAGTCCA 61.328 60.000 0.00 0.00 34.09 4.02
510 511 0.179108 GTATCGGTGAGCCAGTCCAC 60.179 60.000 0.00 0.00 34.09 4.02
511 512 1.663379 TATCGGTGAGCCAGTCCACG 61.663 60.000 0.00 0.00 34.30 4.94
512 513 4.742201 CGGTGAGCCAGTCCACGG 62.742 72.222 0.00 0.00 34.30 4.94
513 514 3.626924 GGTGAGCCAGTCCACGGT 61.627 66.667 0.00 0.00 34.30 4.83
514 515 2.048127 GTGAGCCAGTCCACGGTC 60.048 66.667 0.00 0.00 0.00 4.79
515 516 2.523168 TGAGCCAGTCCACGGTCA 60.523 61.111 0.00 0.00 0.00 4.02
516 517 2.262915 GAGCCAGTCCACGGTCAG 59.737 66.667 0.00 0.00 0.00 3.51
517 518 3.941657 GAGCCAGTCCACGGTCAGC 62.942 68.421 0.00 0.00 0.00 4.26
519 520 3.625897 CCAGTCCACGGTCAGCCA 61.626 66.667 0.00 0.00 34.09 4.75
520 521 2.425592 CAGTCCACGGTCAGCCAA 59.574 61.111 0.00 0.00 34.09 4.52
521 522 1.227823 CAGTCCACGGTCAGCCAAA 60.228 57.895 0.00 0.00 34.09 3.28
522 523 0.606401 CAGTCCACGGTCAGCCAAAT 60.606 55.000 0.00 0.00 34.09 2.32
523 524 0.606401 AGTCCACGGTCAGCCAAATG 60.606 55.000 0.00 0.00 34.09 2.32
524 525 1.303236 TCCACGGTCAGCCAAATGG 60.303 57.895 0.00 0.00 34.76 3.16
547 548 1.218047 TCCAAGAAGGATGCGGACG 59.782 57.895 0.00 0.00 43.07 4.79
548 549 1.815421 CCAAGAAGGATGCGGACGG 60.815 63.158 0.00 0.00 41.22 4.79
549 550 1.815421 CAAGAAGGATGCGGACGGG 60.815 63.158 0.00 0.00 0.00 5.28
550 551 1.987855 AAGAAGGATGCGGACGGGA 60.988 57.895 0.00 0.00 0.00 5.14
551 552 1.961180 AAGAAGGATGCGGACGGGAG 61.961 60.000 0.00 0.00 0.00 4.30
552 553 3.447025 GAAGGATGCGGACGGGAGG 62.447 68.421 0.00 0.00 0.00 4.30
553 554 3.976490 AAGGATGCGGACGGGAGGA 62.976 63.158 0.00 0.00 0.00 3.71
554 555 3.467226 GGATGCGGACGGGAGGAA 61.467 66.667 0.00 0.00 0.00 3.36
555 556 2.808206 GGATGCGGACGGGAGGAAT 61.808 63.158 0.00 0.00 0.00 3.01
556 557 1.595382 GATGCGGACGGGAGGAATG 60.595 63.158 0.00 0.00 0.00 2.67
557 558 2.028125 GATGCGGACGGGAGGAATGA 62.028 60.000 0.00 0.00 0.00 2.57
558 559 2.032860 ATGCGGACGGGAGGAATGAG 62.033 60.000 0.00 0.00 0.00 2.90
559 560 2.815308 CGGACGGGAGGAATGAGG 59.185 66.667 0.00 0.00 0.00 3.86
560 561 1.756950 CGGACGGGAGGAATGAGGA 60.757 63.158 0.00 0.00 0.00 3.71
561 562 1.327690 CGGACGGGAGGAATGAGGAA 61.328 60.000 0.00 0.00 0.00 3.36
562 563 0.178301 GGACGGGAGGAATGAGGAAC 59.822 60.000 0.00 0.00 0.00 3.62
563 564 0.179108 GACGGGAGGAATGAGGAACG 60.179 60.000 0.00 0.00 0.00 3.95
564 565 1.144057 CGGGAGGAATGAGGAACGG 59.856 63.158 0.00 0.00 0.00 4.44
565 566 1.327690 CGGGAGGAATGAGGAACGGA 61.328 60.000 0.00 0.00 0.00 4.69
566 567 0.178301 GGGAGGAATGAGGAACGGAC 59.822 60.000 0.00 0.00 0.00 4.79
567 568 0.179108 GGAGGAATGAGGAACGGACG 60.179 60.000 0.00 0.00 0.00 4.79
568 569 0.531200 GAGGAATGAGGAACGGACGT 59.469 55.000 0.00 0.00 0.00 4.34
569 570 0.246635 AGGAATGAGGAACGGACGTG 59.753 55.000 0.00 0.00 0.00 4.49
570 571 1.359459 GGAATGAGGAACGGACGTGC 61.359 60.000 0.00 0.00 0.00 5.34
571 572 1.683790 GAATGAGGAACGGACGTGCG 61.684 60.000 28.33 28.33 0.00 5.34
572 573 3.642778 ATGAGGAACGGACGTGCGG 62.643 63.158 32.46 15.18 0.00 5.69
576 577 4.353437 GAACGGACGTGCGGGAGT 62.353 66.667 32.46 15.08 0.00 3.85
577 578 4.353437 AACGGACGTGCGGGAGTC 62.353 66.667 32.46 0.00 36.70 3.36
579 580 4.351938 CGGACGTGCGGGAGTCAA 62.352 66.667 22.68 0.00 39.01 3.18
580 581 2.737376 GGACGTGCGGGAGTCAAC 60.737 66.667 0.00 0.00 39.01 3.18
581 582 3.103911 GACGTGCGGGAGTCAACG 61.104 66.667 0.00 2.47 37.34 4.10
582 583 3.547249 GACGTGCGGGAGTCAACGA 62.547 63.158 10.22 0.00 37.34 3.85
583 584 2.805353 CGTGCGGGAGTCAACGAG 60.805 66.667 10.22 0.00 0.00 4.18
584 585 3.112709 GTGCGGGAGTCAACGAGC 61.113 66.667 10.22 0.02 0.00 5.03
585 586 3.611674 TGCGGGAGTCAACGAGCA 61.612 61.111 10.22 2.50 0.00 4.26
586 587 2.357034 GCGGGAGTCAACGAGCAA 60.357 61.111 10.22 0.00 0.00 3.91
587 588 1.959226 GCGGGAGTCAACGAGCAAA 60.959 57.895 10.22 0.00 0.00 3.68
588 589 1.503818 GCGGGAGTCAACGAGCAAAA 61.504 55.000 10.22 0.00 0.00 2.44
589 590 0.941542 CGGGAGTCAACGAGCAAAAA 59.058 50.000 0.64 0.00 0.00 1.94
611 612 7.563724 AAAACCACCAGTTAGATTACTAGGA 57.436 36.000 0.00 0.00 37.88 2.94
612 613 6.793505 AACCACCAGTTAGATTACTAGGAG 57.206 41.667 0.00 0.00 36.74 3.69
613 614 5.840081 ACCACCAGTTAGATTACTAGGAGT 58.160 41.667 0.00 0.00 0.00 3.85
614 615 5.657302 ACCACCAGTTAGATTACTAGGAGTG 59.343 44.000 0.00 0.00 0.00 3.51
615 616 5.892119 CCACCAGTTAGATTACTAGGAGTGA 59.108 44.000 0.00 0.00 0.00 3.41
616 617 6.039941 CCACCAGTTAGATTACTAGGAGTGAG 59.960 46.154 0.00 0.00 0.00 3.51
617 618 6.039941 CACCAGTTAGATTACTAGGAGTGAGG 59.960 46.154 0.00 0.00 0.00 3.86
618 619 5.010213 CCAGTTAGATTACTAGGAGTGAGGC 59.990 48.000 0.00 0.00 0.00 4.70
619 620 5.830991 CAGTTAGATTACTAGGAGTGAGGCT 59.169 44.000 0.00 0.00 0.00 4.58
620 621 6.999272 CAGTTAGATTACTAGGAGTGAGGCTA 59.001 42.308 0.00 0.00 0.00 3.93
621 622 7.668052 CAGTTAGATTACTAGGAGTGAGGCTAT 59.332 40.741 0.00 0.00 0.00 2.97
622 623 8.892530 AGTTAGATTACTAGGAGTGAGGCTATA 58.107 37.037 0.00 0.00 0.00 1.31
623 624 8.949177 GTTAGATTACTAGGAGTGAGGCTATAC 58.051 40.741 0.00 0.00 0.00 1.47
624 625 6.174760 AGATTACTAGGAGTGAGGCTATACG 58.825 44.000 0.00 0.00 0.00 3.06
625 626 2.506444 ACTAGGAGTGAGGCTATACGC 58.494 52.381 0.00 0.00 38.13 4.42
626 627 1.465387 CTAGGAGTGAGGCTATACGCG 59.535 57.143 3.53 3.53 40.44 6.01
627 628 0.465824 AGGAGTGAGGCTATACGCGT 60.466 55.000 19.17 19.17 40.44 6.01
628 629 0.384669 GGAGTGAGGCTATACGCGTT 59.615 55.000 20.78 8.23 40.44 4.84
629 630 1.478137 GAGTGAGGCTATACGCGTTG 58.522 55.000 20.78 9.79 40.44 4.10
630 631 1.065102 GAGTGAGGCTATACGCGTTGA 59.935 52.381 20.78 0.00 40.44 3.18
631 632 1.197910 GTGAGGCTATACGCGTTGAC 58.802 55.000 20.78 11.00 40.44 3.18
632 633 0.248336 TGAGGCTATACGCGTTGACG 60.248 55.000 20.78 5.01 40.44 4.35
650 651 8.897457 CGTTGACGCTCTAATATATGAACTAT 57.103 34.615 0.00 0.00 0.00 2.12
651 652 9.343103 CGTTGACGCTCTAATATATGAACTATT 57.657 33.333 0.00 0.00 0.00 1.73
669 670 9.394767 TGAACTATTTATGCAAATCTTAGAGCA 57.605 29.630 0.00 0.00 41.73 4.26
672 673 9.401058 ACTATTTATGCAAATCTTAGAGCAACT 57.599 29.630 0.00 0.00 40.76 3.16
673 674 9.875675 CTATTTATGCAAATCTTAGAGCAACTC 57.124 33.333 0.00 0.00 40.76 3.01
674 675 6.683974 TTATGCAAATCTTAGAGCAACTCC 57.316 37.500 0.00 0.00 40.76 3.85
675 676 4.019792 TGCAAATCTTAGAGCAACTCCA 57.980 40.909 0.00 0.00 33.48 3.86
679 680 4.537135 AATCTTAGAGCAACTCCAACGA 57.463 40.909 0.00 0.00 0.00 3.85
685 686 0.935196 AGCAACTCCAACGACGTTTC 59.065 50.000 11.24 0.00 0.00 2.78
706 707 2.286872 TGTCCGCTTTTTGTCCGTTTA 58.713 42.857 0.00 0.00 0.00 2.01
742 743 2.014594 CCGTCCGCCATCTTTTAGC 58.985 57.895 0.00 0.00 0.00 3.09
788 791 1.102978 CCGACCCATTTTCATGACCC 58.897 55.000 0.00 0.00 31.07 4.46
812 817 2.567067 GTGTTTAACATCGTGCCGTTC 58.433 47.619 0.00 0.00 0.00 3.95
815 820 0.322322 TTAACATCGTGCCGTTCCCT 59.678 50.000 0.00 0.00 0.00 4.20
830 835 1.903404 CCCTTGGTTTTGGCGCTCT 60.903 57.895 7.64 0.00 0.00 4.09
833 838 1.523758 CTTGGTTTTGGCGCTCTAGT 58.476 50.000 7.64 0.00 0.00 2.57
1008 1020 0.459899 TCTGCGCTACCATGTCGATT 59.540 50.000 9.73 0.00 0.00 3.34
1012 1024 0.595053 CGCTACCATGTCGATTCGCT 60.595 55.000 0.00 0.00 0.00 4.93
1014 1026 1.802880 GCTACCATGTCGATTCGCTGT 60.803 52.381 0.00 0.00 0.00 4.40
1729 2190 2.680352 GCCCGGTGAGGACAGAGA 60.680 66.667 0.00 0.00 45.00 3.10
1772 2235 3.118454 CCGCACCGACGCAAATCT 61.118 61.111 0.00 0.00 0.00 2.40
2086 2552 7.052873 GGTAGTACAAGAGTAGATCTACCACA 58.947 42.308 25.93 6.26 41.98 4.17
2089 2555 7.176490 AGTACAAGAGTAGATCTACCACAAGT 58.824 38.462 25.93 21.39 37.23 3.16
2501 2967 3.065371 GTCCGGCTCCATAAATGTTGAAG 59.935 47.826 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.034059 AGGCTCGTCTCCAACAACAG 59.966 55.000 0.00 0.00 0.00 3.16
61 62 3.118454 CGCCATGGACACGGTGTC 61.118 66.667 28.65 28.65 46.23 3.67
62 63 4.697756 CCGCCATGGACACGGTGT 62.698 66.667 18.40 14.66 42.01 4.16
96 97 4.504916 CTCCTCTCCCTGCACGCG 62.505 72.222 3.53 3.53 0.00 6.01
97 98 4.154347 CCTCCTCTCCCTGCACGC 62.154 72.222 0.00 0.00 0.00 5.34
98 99 2.363018 TCCTCCTCTCCCTGCACG 60.363 66.667 0.00 0.00 0.00 5.34
99 100 1.305718 ACTCCTCCTCTCCCTGCAC 60.306 63.158 0.00 0.00 0.00 4.57
100 101 1.000993 GACTCCTCCTCTCCCTGCA 59.999 63.158 0.00 0.00 0.00 4.41
101 102 1.760480 GGACTCCTCCTCTCCCTGC 60.760 68.421 0.00 0.00 33.07 4.85
102 103 1.454847 CGGACTCCTCCTCTCCCTG 60.455 68.421 0.00 0.00 33.79 4.45
103 104 1.619975 TCGGACTCCTCCTCTCCCT 60.620 63.158 0.00 0.00 33.79 4.20
104 105 1.152839 CTCGGACTCCTCCTCTCCC 60.153 68.421 0.00 0.00 33.79 4.30
105 106 1.152839 CCTCGGACTCCTCCTCTCC 60.153 68.421 0.00 0.00 33.79 3.71
106 107 0.256464 TTCCTCGGACTCCTCCTCTC 59.744 60.000 0.00 0.00 33.79 3.20
107 108 0.257616 CTTCCTCGGACTCCTCCTCT 59.742 60.000 0.00 0.00 33.79 3.69
108 109 0.256464 TCTTCCTCGGACTCCTCCTC 59.744 60.000 0.00 0.00 33.79 3.71
109 110 0.033894 GTCTTCCTCGGACTCCTCCT 60.034 60.000 0.00 0.00 33.79 3.69
110 111 0.323542 TGTCTTCCTCGGACTCCTCC 60.324 60.000 0.00 0.00 35.04 4.30
111 112 1.407258 CATGTCTTCCTCGGACTCCTC 59.593 57.143 0.00 0.00 35.04 3.71
112 113 1.479709 CATGTCTTCCTCGGACTCCT 58.520 55.000 0.00 0.00 35.04 3.69
113 114 0.461961 CCATGTCTTCCTCGGACTCC 59.538 60.000 0.00 0.00 35.04 3.85
114 115 1.407258 CTCCATGTCTTCCTCGGACTC 59.593 57.143 0.00 0.00 35.04 3.36
115 116 1.479709 CTCCATGTCTTCCTCGGACT 58.520 55.000 0.00 0.00 35.04 3.85
116 117 0.461961 CCTCCATGTCTTCCTCGGAC 59.538 60.000 0.00 0.00 0.00 4.79
117 118 0.335019 TCCTCCATGTCTTCCTCGGA 59.665 55.000 0.00 0.00 0.00 4.55
118 119 0.749649 CTCCTCCATGTCTTCCTCGG 59.250 60.000 0.00 0.00 0.00 4.63
119 120 1.680735 CTCTCCTCCATGTCTTCCTCG 59.319 57.143 0.00 0.00 0.00 4.63
120 121 2.693074 GACTCTCCTCCATGTCTTCCTC 59.307 54.545 0.00 0.00 0.00 3.71
121 122 2.043664 TGACTCTCCTCCATGTCTTCCT 59.956 50.000 0.00 0.00 0.00 3.36
122 123 2.461695 TGACTCTCCTCCATGTCTTCC 58.538 52.381 0.00 0.00 0.00 3.46
123 124 4.751767 AATGACTCTCCTCCATGTCTTC 57.248 45.455 0.00 0.00 0.00 2.87
124 125 5.901853 TCATAATGACTCTCCTCCATGTCTT 59.098 40.000 0.00 0.00 0.00 3.01
125 126 5.462240 TCATAATGACTCTCCTCCATGTCT 58.538 41.667 0.00 0.00 0.00 3.41
126 127 5.782047 CTCATAATGACTCTCCTCCATGTC 58.218 45.833 0.00 0.00 0.00 3.06
127 128 4.040217 GCTCATAATGACTCTCCTCCATGT 59.960 45.833 0.00 0.00 0.00 3.21
128 129 4.567971 GCTCATAATGACTCTCCTCCATG 58.432 47.826 0.00 0.00 0.00 3.66
129 130 3.257873 CGCTCATAATGACTCTCCTCCAT 59.742 47.826 0.00 0.00 0.00 3.41
130 131 2.625314 CGCTCATAATGACTCTCCTCCA 59.375 50.000 0.00 0.00 0.00 3.86
131 132 2.029470 CCGCTCATAATGACTCTCCTCC 60.029 54.545 0.00 0.00 0.00 4.30
132 133 2.887783 TCCGCTCATAATGACTCTCCTC 59.112 50.000 0.00 0.00 0.00 3.71
133 134 2.950781 TCCGCTCATAATGACTCTCCT 58.049 47.619 0.00 0.00 0.00 3.69
134 135 3.319405 TCTTCCGCTCATAATGACTCTCC 59.681 47.826 0.00 0.00 0.00 3.71
135 136 4.576216 TCTTCCGCTCATAATGACTCTC 57.424 45.455 0.00 0.00 0.00 3.20
136 137 4.202202 CCTTCTTCCGCTCATAATGACTCT 60.202 45.833 0.00 0.00 0.00 3.24
137 138 4.054671 CCTTCTTCCGCTCATAATGACTC 58.945 47.826 0.00 0.00 0.00 3.36
138 139 3.706594 TCCTTCTTCCGCTCATAATGACT 59.293 43.478 0.00 0.00 0.00 3.41
139 140 4.060038 TCCTTCTTCCGCTCATAATGAC 57.940 45.455 0.00 0.00 0.00 3.06
140 141 4.753516 TTCCTTCTTCCGCTCATAATGA 57.246 40.909 0.00 0.00 0.00 2.57
141 142 5.528690 TCATTTCCTTCTTCCGCTCATAATG 59.471 40.000 0.00 0.00 0.00 1.90
142 143 5.684704 TCATTTCCTTCTTCCGCTCATAAT 58.315 37.500 0.00 0.00 0.00 1.28
143 144 5.097742 TCATTTCCTTCTTCCGCTCATAA 57.902 39.130 0.00 0.00 0.00 1.90
144 145 4.753516 TCATTTCCTTCTTCCGCTCATA 57.246 40.909 0.00 0.00 0.00 2.15
145 146 3.634397 TCATTTCCTTCTTCCGCTCAT 57.366 42.857 0.00 0.00 0.00 2.90
146 147 3.074412 GTTCATTTCCTTCTTCCGCTCA 58.926 45.455 0.00 0.00 0.00 4.26
147 148 3.074412 TGTTCATTTCCTTCTTCCGCTC 58.926 45.455 0.00 0.00 0.00 5.03
148 149 3.077359 CTGTTCATTTCCTTCTTCCGCT 58.923 45.455 0.00 0.00 0.00 5.52
149 150 2.162408 CCTGTTCATTTCCTTCTTCCGC 59.838 50.000 0.00 0.00 0.00 5.54
150 151 2.749621 CCCTGTTCATTTCCTTCTTCCG 59.250 50.000 0.00 0.00 0.00 4.30
151 152 3.767711 ACCCTGTTCATTTCCTTCTTCC 58.232 45.455 0.00 0.00 0.00 3.46
152 153 4.392138 CGTACCCTGTTCATTTCCTTCTTC 59.608 45.833 0.00 0.00 0.00 2.87
153 154 4.324267 CGTACCCTGTTCATTTCCTTCTT 58.676 43.478 0.00 0.00 0.00 2.52
154 155 3.868754 GCGTACCCTGTTCATTTCCTTCT 60.869 47.826 0.00 0.00 0.00 2.85
155 156 2.418976 GCGTACCCTGTTCATTTCCTTC 59.581 50.000 0.00 0.00 0.00 3.46
156 157 2.433436 GCGTACCCTGTTCATTTCCTT 58.567 47.619 0.00 0.00 0.00 3.36
157 158 1.674817 CGCGTACCCTGTTCATTTCCT 60.675 52.381 0.00 0.00 0.00 3.36
158 159 0.725117 CGCGTACCCTGTTCATTTCC 59.275 55.000 0.00 0.00 0.00 3.13
159 160 1.127951 CACGCGTACCCTGTTCATTTC 59.872 52.381 13.44 0.00 0.00 2.17
160 161 1.153353 CACGCGTACCCTGTTCATTT 58.847 50.000 13.44 0.00 0.00 2.32
161 162 0.672401 CCACGCGTACCCTGTTCATT 60.672 55.000 13.44 0.00 0.00 2.57
162 163 1.079405 CCACGCGTACCCTGTTCAT 60.079 57.895 13.44 0.00 0.00 2.57
163 164 2.340809 CCACGCGTACCCTGTTCA 59.659 61.111 13.44 0.00 0.00 3.18
164 165 2.025418 CACCACGCGTACCCTGTTC 61.025 63.158 13.44 0.00 0.00 3.18
165 166 2.029964 CACCACGCGTACCCTGTT 59.970 61.111 13.44 0.00 0.00 3.16
166 167 3.998672 CCACCACGCGTACCCTGT 61.999 66.667 13.44 1.13 0.00 4.00
167 168 4.752879 CCCACCACGCGTACCCTG 62.753 72.222 13.44 4.46 0.00 4.45
170 171 2.808181 AATTCCCCACCACGCGTACC 62.808 60.000 13.44 0.00 0.00 3.34
171 172 1.376295 AATTCCCCACCACGCGTAC 60.376 57.895 13.44 0.00 0.00 3.67
172 173 1.376166 CAATTCCCCACCACGCGTA 60.376 57.895 13.44 0.00 0.00 4.42
173 174 2.671619 CAATTCCCCACCACGCGT 60.672 61.111 5.58 5.58 0.00 6.01
174 175 3.439540 CCAATTCCCCACCACGCG 61.440 66.667 3.53 3.53 0.00 6.01
175 176 2.034999 TCCAATTCCCCACCACGC 59.965 61.111 0.00 0.00 0.00 5.34
176 177 1.378514 CCTCCAATTCCCCACCACG 60.379 63.158 0.00 0.00 0.00 4.94
177 178 0.034089 CTCCTCCAATTCCCCACCAC 60.034 60.000 0.00 0.00 0.00 4.16
178 179 0.477597 ACTCCTCCAATTCCCCACCA 60.478 55.000 0.00 0.00 0.00 4.17
179 180 1.591768 TACTCCTCCAATTCCCCACC 58.408 55.000 0.00 0.00 0.00 4.61
180 181 2.844348 TCTTACTCCTCCAATTCCCCAC 59.156 50.000 0.00 0.00 0.00 4.61
181 182 3.214694 TCTTACTCCTCCAATTCCCCA 57.785 47.619 0.00 0.00 0.00 4.96
182 183 4.166144 TCAATCTTACTCCTCCAATTCCCC 59.834 45.833 0.00 0.00 0.00 4.81
183 184 5.373812 TCAATCTTACTCCTCCAATTCCC 57.626 43.478 0.00 0.00 0.00 3.97
184 185 5.240403 GCATCAATCTTACTCCTCCAATTCC 59.760 44.000 0.00 0.00 0.00 3.01
185 186 5.824624 TGCATCAATCTTACTCCTCCAATTC 59.175 40.000 0.00 0.00 0.00 2.17
186 187 5.759059 TGCATCAATCTTACTCCTCCAATT 58.241 37.500 0.00 0.00 0.00 2.32
187 188 5.378230 TGCATCAATCTTACTCCTCCAAT 57.622 39.130 0.00 0.00 0.00 3.16
188 189 4.842531 TGCATCAATCTTACTCCTCCAA 57.157 40.909 0.00 0.00 0.00 3.53
189 190 4.225942 ACTTGCATCAATCTTACTCCTCCA 59.774 41.667 0.00 0.00 0.00 3.86
190 191 4.775236 ACTTGCATCAATCTTACTCCTCC 58.225 43.478 0.00 0.00 0.00 4.30
191 192 5.669477 AGACTTGCATCAATCTTACTCCTC 58.331 41.667 0.00 0.00 0.00 3.71
192 193 5.690464 AGACTTGCATCAATCTTACTCCT 57.310 39.130 0.00 0.00 0.00 3.69
193 194 6.478344 CAGTAGACTTGCATCAATCTTACTCC 59.522 42.308 0.00 0.00 0.00 3.85
194 195 6.019156 GCAGTAGACTTGCATCAATCTTACTC 60.019 42.308 0.00 0.00 0.00 2.59
195 196 5.814705 GCAGTAGACTTGCATCAATCTTACT 59.185 40.000 0.00 0.00 0.00 2.24
196 197 5.276584 CGCAGTAGACTTGCATCAATCTTAC 60.277 44.000 0.35 0.00 0.00 2.34
197 198 4.805719 CGCAGTAGACTTGCATCAATCTTA 59.194 41.667 0.35 0.00 0.00 2.10
198 199 3.620374 CGCAGTAGACTTGCATCAATCTT 59.380 43.478 0.35 0.00 0.00 2.40
199 200 3.193263 CGCAGTAGACTTGCATCAATCT 58.807 45.455 0.35 0.00 0.00 2.40
200 201 2.286294 CCGCAGTAGACTTGCATCAATC 59.714 50.000 0.35 0.00 0.00 2.67
201 202 2.283298 CCGCAGTAGACTTGCATCAAT 58.717 47.619 0.35 0.00 0.00 2.57
202 203 1.675714 CCCGCAGTAGACTTGCATCAA 60.676 52.381 0.35 0.00 0.00 2.57
203 204 0.108186 CCCGCAGTAGACTTGCATCA 60.108 55.000 0.35 0.00 0.00 3.07
204 205 0.108138 ACCCGCAGTAGACTTGCATC 60.108 55.000 0.35 0.00 0.00 3.91
205 206 0.108138 GACCCGCAGTAGACTTGCAT 60.108 55.000 0.35 0.00 0.00 3.96
206 207 1.292223 GACCCGCAGTAGACTTGCA 59.708 57.895 0.35 0.00 0.00 4.08
207 208 0.737715 CTGACCCGCAGTAGACTTGC 60.738 60.000 0.00 0.00 39.85 4.01
208 209 0.737715 GCTGACCCGCAGTAGACTTG 60.738 60.000 0.00 0.00 46.62 3.16
209 210 0.900647 AGCTGACCCGCAGTAGACTT 60.901 55.000 0.00 0.00 46.62 3.01
210 211 0.034380 TAGCTGACCCGCAGTAGACT 60.034 55.000 0.00 0.00 46.62 3.24
211 212 1.033574 ATAGCTGACCCGCAGTAGAC 58.966 55.000 0.00 0.00 46.62 2.59
212 213 1.032794 CATAGCTGACCCGCAGTAGA 58.967 55.000 0.00 0.00 46.62 2.59
213 214 1.032794 TCATAGCTGACCCGCAGTAG 58.967 55.000 0.00 0.00 46.62 2.57
214 215 1.613925 GATCATAGCTGACCCGCAGTA 59.386 52.381 0.00 0.00 46.62 2.74
215 216 0.390860 GATCATAGCTGACCCGCAGT 59.609 55.000 0.00 0.00 46.62 4.40
216 217 5.670422 ATGTGATCATAGCTGACCCGCAG 62.670 52.174 0.00 0.00 38.89 5.18
217 218 0.104855 GTGATCATAGCTGACCCGCA 59.895 55.000 0.00 0.00 33.22 5.69
218 219 0.104855 TGTGATCATAGCTGACCCGC 59.895 55.000 0.00 0.00 33.22 6.13
219 220 2.827800 ATGTGATCATAGCTGACCCG 57.172 50.000 0.00 0.00 33.22 5.28
220 221 3.181451 TGGAATGTGATCATAGCTGACCC 60.181 47.826 0.00 0.00 33.22 4.46
221 222 4.063689 CTGGAATGTGATCATAGCTGACC 58.936 47.826 0.00 0.00 33.22 4.02
222 223 4.063689 CCTGGAATGTGATCATAGCTGAC 58.936 47.826 0.00 0.00 33.22 3.51
223 224 3.495629 GCCTGGAATGTGATCATAGCTGA 60.496 47.826 0.00 0.00 33.49 4.26
224 225 2.812591 GCCTGGAATGTGATCATAGCTG 59.187 50.000 0.00 0.00 33.49 4.24
225 226 2.224719 GGCCTGGAATGTGATCATAGCT 60.225 50.000 0.00 0.00 33.49 3.32
226 227 2.157738 GGCCTGGAATGTGATCATAGC 58.842 52.381 0.00 0.00 33.49 2.97
227 228 2.420642 CGGCCTGGAATGTGATCATAG 58.579 52.381 0.00 0.00 33.49 2.23
228 229 1.543208 GCGGCCTGGAATGTGATCATA 60.543 52.381 0.00 0.00 33.49 2.15
229 230 0.820891 GCGGCCTGGAATGTGATCAT 60.821 55.000 0.00 0.00 35.59 2.45
230 231 1.451927 GCGGCCTGGAATGTGATCA 60.452 57.895 0.00 0.00 0.00 2.92
231 232 1.442526 CTGCGGCCTGGAATGTGATC 61.443 60.000 0.00 0.00 0.00 2.92
232 233 1.452651 CTGCGGCCTGGAATGTGAT 60.453 57.895 0.00 0.00 0.00 3.06
233 234 2.046023 CTGCGGCCTGGAATGTGA 60.046 61.111 0.00 0.00 0.00 3.58
234 235 3.136123 CCTGCGGCCTGGAATGTG 61.136 66.667 0.00 0.00 32.15 3.21
235 236 3.628646 GACCTGCGGCCTGGAATGT 62.629 63.158 14.63 2.79 34.43 2.71
236 237 2.825836 GACCTGCGGCCTGGAATG 60.826 66.667 14.63 0.00 34.43 2.67
237 238 2.905996 TTGACCTGCGGCCTGGAAT 61.906 57.895 14.63 0.00 34.43 3.01
238 239 3.565214 TTGACCTGCGGCCTGGAA 61.565 61.111 14.63 1.80 34.43 3.53
239 240 4.329545 GTTGACCTGCGGCCTGGA 62.330 66.667 14.63 1.30 34.43 3.86
241 242 4.680237 TCGTTGACCTGCGGCCTG 62.680 66.667 0.00 0.00 0.00 4.85
242 243 4.379243 CTCGTTGACCTGCGGCCT 62.379 66.667 0.00 0.00 0.00 5.19
245 246 4.760047 CCCCTCGTTGACCTGCGG 62.760 72.222 0.00 0.00 0.00 5.69
246 247 4.760047 CCCCCTCGTTGACCTGCG 62.760 72.222 0.00 0.00 0.00 5.18
247 248 2.670148 ATCCCCCTCGTTGACCTGC 61.670 63.158 0.00 0.00 0.00 4.85
248 249 1.221840 CATCCCCCTCGTTGACCTG 59.778 63.158 0.00 0.00 0.00 4.00
249 250 2.670148 GCATCCCCCTCGTTGACCT 61.670 63.158 0.00 0.00 0.00 3.85
250 251 2.124695 GCATCCCCCTCGTTGACC 60.125 66.667 0.00 0.00 0.00 4.02
251 252 1.153349 GAGCATCCCCCTCGTTGAC 60.153 63.158 0.00 0.00 0.00 3.18
252 253 0.909610 AAGAGCATCCCCCTCGTTGA 60.910 55.000 0.00 0.00 33.66 3.18
253 254 0.745845 CAAGAGCATCCCCCTCGTTG 60.746 60.000 0.00 0.00 33.66 4.10
254 255 1.604378 CAAGAGCATCCCCCTCGTT 59.396 57.895 0.00 0.00 33.66 3.85
255 256 2.370445 CCAAGAGCATCCCCCTCGT 61.370 63.158 0.00 0.00 33.66 4.18
256 257 2.507944 CCAAGAGCATCCCCCTCG 59.492 66.667 0.00 0.00 33.66 4.63
257 258 2.922234 CCCAAGAGCATCCCCCTC 59.078 66.667 0.00 0.00 33.66 4.30
258 259 3.424105 GCCCAAGAGCATCCCCCT 61.424 66.667 0.00 0.00 33.66 4.79
259 260 3.424105 AGCCCAAGAGCATCCCCC 61.424 66.667 0.00 0.00 33.66 5.40
260 261 2.123982 CAGCCCAAGAGCATCCCC 60.124 66.667 0.00 0.00 33.66 4.81
261 262 1.751927 CACAGCCCAAGAGCATCCC 60.752 63.158 0.00 0.00 33.66 3.85
262 263 1.751927 CCACAGCCCAAGAGCATCC 60.752 63.158 0.00 0.00 33.66 3.51
263 264 1.751927 CCCACAGCCCAAGAGCATC 60.752 63.158 0.00 0.00 34.23 3.91
264 265 2.357836 CCCACAGCCCAAGAGCAT 59.642 61.111 0.00 0.00 34.23 3.79
265 266 4.666253 GCCCACAGCCCAAGAGCA 62.666 66.667 0.00 0.00 34.35 4.26
275 276 4.007644 TGAGGAGTGCGCCCACAG 62.008 66.667 4.18 0.00 44.53 3.66
276 277 4.314440 GTGAGGAGTGCGCCCACA 62.314 66.667 4.18 0.19 44.53 4.17
277 278 4.314440 TGTGAGGAGTGCGCCCAC 62.314 66.667 4.18 0.00 42.39 4.61
278 279 4.007644 CTGTGAGGAGTGCGCCCA 62.008 66.667 4.18 0.00 0.00 5.36
279 280 3.655810 CTCTGTGAGGAGTGCGCCC 62.656 68.421 4.18 0.00 0.00 6.13
280 281 2.125753 CTCTGTGAGGAGTGCGCC 60.126 66.667 4.18 0.00 0.00 6.53
281 282 1.445238 GACTCTGTGAGGAGTGCGC 60.445 63.158 0.00 0.00 45.32 6.09
282 283 0.109365 CAGACTCTGTGAGGAGTGCG 60.109 60.000 1.71 0.00 45.32 5.34
283 284 0.965439 ACAGACTCTGTGAGGAGTGC 59.035 55.000 11.07 0.00 45.32 4.40
292 293 0.546122 TTGGTTGGCACAGACTCTGT 59.454 50.000 5.82 5.82 46.51 3.41
293 294 1.538512 CATTGGTTGGCACAGACTCTG 59.461 52.381 4.36 4.36 42.39 3.35
294 295 1.421268 TCATTGGTTGGCACAGACTCT 59.579 47.619 0.00 0.00 42.39 3.24
295 296 1.896220 TCATTGGTTGGCACAGACTC 58.104 50.000 0.00 0.00 42.39 3.36
296 297 2.592102 ATCATTGGTTGGCACAGACT 57.408 45.000 0.00 0.00 42.39 3.24
297 298 3.505680 TGTTATCATTGGTTGGCACAGAC 59.494 43.478 0.00 0.00 42.39 3.51
298 299 3.760738 TGTTATCATTGGTTGGCACAGA 58.239 40.909 0.00 0.00 42.39 3.41
299 300 4.724074 ATGTTATCATTGGTTGGCACAG 57.276 40.909 0.00 0.00 42.39 3.66
320 321 9.577110 CGGTGTAGTTAAATGATAGTAAGACAA 57.423 33.333 0.00 0.00 0.00 3.18
321 322 8.959548 TCGGTGTAGTTAAATGATAGTAAGACA 58.040 33.333 0.00 0.00 0.00 3.41
322 323 9.448294 CTCGGTGTAGTTAAATGATAGTAAGAC 57.552 37.037 0.00 0.00 0.00 3.01
323 324 9.399797 TCTCGGTGTAGTTAAATGATAGTAAGA 57.600 33.333 0.00 0.00 0.00 2.10
334 335 9.525409 GCTATTCTATTTCTCGGTGTAGTTAAA 57.475 33.333 0.00 0.00 0.00 1.52
335 336 8.910944 AGCTATTCTATTTCTCGGTGTAGTTAA 58.089 33.333 0.00 0.00 0.00 2.01
336 337 8.350722 CAGCTATTCTATTTCTCGGTGTAGTTA 58.649 37.037 0.00 0.00 0.00 2.24
337 338 7.147880 ACAGCTATTCTATTTCTCGGTGTAGTT 60.148 37.037 0.00 0.00 30.93 2.24
338 339 6.321690 ACAGCTATTCTATTTCTCGGTGTAGT 59.678 38.462 0.00 0.00 30.93 2.73
339 340 6.740110 ACAGCTATTCTATTTCTCGGTGTAG 58.260 40.000 0.00 0.00 30.93 2.74
340 341 6.710597 ACAGCTATTCTATTTCTCGGTGTA 57.289 37.500 0.00 0.00 30.93 2.90
341 342 5.599999 ACAGCTATTCTATTTCTCGGTGT 57.400 39.130 0.00 0.00 0.00 4.16
342 343 5.625721 CGTACAGCTATTCTATTTCTCGGTG 59.374 44.000 0.00 0.00 0.00 4.94
343 344 5.530171 TCGTACAGCTATTCTATTTCTCGGT 59.470 40.000 0.00 0.00 0.00 4.69
344 345 5.998553 TCGTACAGCTATTCTATTTCTCGG 58.001 41.667 0.00 0.00 0.00 4.63
345 346 9.053135 GTATTCGTACAGCTATTCTATTTCTCG 57.947 37.037 0.00 0.00 0.00 4.04
351 352 8.444715 CGAAGAGTATTCGTACAGCTATTCTAT 58.555 37.037 11.67 0.00 37.18 1.98
352 353 7.794880 CGAAGAGTATTCGTACAGCTATTCTA 58.205 38.462 11.67 0.00 37.18 2.10
353 354 6.660722 CGAAGAGTATTCGTACAGCTATTCT 58.339 40.000 11.67 0.00 37.18 2.40
354 355 6.898451 CGAAGAGTATTCGTACAGCTATTC 57.102 41.667 11.67 0.00 37.18 1.75
365 366 3.985279 TGTTGACCAACGAAGAGTATTCG 59.015 43.478 17.81 17.81 43.94 3.34
366 367 4.989168 AGTGTTGACCAACGAAGAGTATTC 59.011 41.667 8.18 0.00 43.94 1.75
367 368 4.750098 CAGTGTTGACCAACGAAGAGTATT 59.250 41.667 8.18 0.00 43.94 1.89
368 369 4.307432 CAGTGTTGACCAACGAAGAGTAT 58.693 43.478 8.18 0.00 43.94 2.12
369 370 3.491964 CCAGTGTTGACCAACGAAGAGTA 60.492 47.826 8.18 0.00 43.94 2.59
370 371 2.550978 CAGTGTTGACCAACGAAGAGT 58.449 47.619 8.18 0.00 43.94 3.24
371 372 1.867233 CCAGTGTTGACCAACGAAGAG 59.133 52.381 8.18 0.00 43.94 2.85
372 373 1.483004 TCCAGTGTTGACCAACGAAGA 59.517 47.619 8.18 0.87 43.94 2.87
373 374 1.597663 GTCCAGTGTTGACCAACGAAG 59.402 52.381 8.18 1.14 43.94 3.79
374 375 1.658994 GTCCAGTGTTGACCAACGAA 58.341 50.000 8.18 0.00 43.94 3.85
375 376 0.528901 CGTCCAGTGTTGACCAACGA 60.529 55.000 8.18 0.00 43.94 3.85
376 377 1.931551 CGTCCAGTGTTGACCAACG 59.068 57.895 8.18 0.00 43.94 4.10
377 378 0.814010 AGCGTCCAGTGTTGACCAAC 60.814 55.000 5.97 5.97 41.50 3.77
378 379 0.107410 AAGCGTCCAGTGTTGACCAA 60.107 50.000 0.00 0.00 0.00 3.67
379 380 0.813610 CAAGCGTCCAGTGTTGACCA 60.814 55.000 0.00 0.00 0.00 4.02
380 381 1.507141 CCAAGCGTCCAGTGTTGACC 61.507 60.000 0.00 0.00 0.00 4.02
381 382 1.507141 CCCAAGCGTCCAGTGTTGAC 61.507 60.000 0.00 0.00 0.00 3.18
382 383 1.227823 CCCAAGCGTCCAGTGTTGA 60.228 57.895 0.00 0.00 0.00 3.18
383 384 2.260869 CCCCAAGCGTCCAGTGTTG 61.261 63.158 0.00 0.00 0.00 3.33
384 385 1.779061 ATCCCCAAGCGTCCAGTGTT 61.779 55.000 0.00 0.00 0.00 3.32
385 386 2.224159 ATCCCCAAGCGTCCAGTGT 61.224 57.895 0.00 0.00 0.00 3.55
386 387 1.746615 CATCCCCAAGCGTCCAGTG 60.747 63.158 0.00 0.00 0.00 3.66
387 388 1.918293 TCATCCCCAAGCGTCCAGT 60.918 57.895 0.00 0.00 0.00 4.00
388 389 1.450312 GTCATCCCCAAGCGTCCAG 60.450 63.158 0.00 0.00 0.00 3.86
389 390 2.668632 GTCATCCCCAAGCGTCCA 59.331 61.111 0.00 0.00 0.00 4.02
390 391 2.511600 CGTCATCCCCAAGCGTCC 60.512 66.667 0.00 0.00 0.00 4.79
391 392 0.672401 TTTCGTCATCCCCAAGCGTC 60.672 55.000 0.00 0.00 0.00 5.19
392 393 0.673644 CTTTCGTCATCCCCAAGCGT 60.674 55.000 0.00 0.00 0.00 5.07
393 394 0.673644 ACTTTCGTCATCCCCAAGCG 60.674 55.000 0.00 0.00 0.00 4.68
394 395 1.534729 AACTTTCGTCATCCCCAAGC 58.465 50.000 0.00 0.00 0.00 4.01
395 396 2.884639 ACAAACTTTCGTCATCCCCAAG 59.115 45.455 0.00 0.00 0.00 3.61
396 397 2.938838 ACAAACTTTCGTCATCCCCAA 58.061 42.857 0.00 0.00 0.00 4.12
397 398 2.649531 ACAAACTTTCGTCATCCCCA 57.350 45.000 0.00 0.00 0.00 4.96
398 399 3.058224 CAGAACAAACTTTCGTCATCCCC 60.058 47.826 0.00 0.00 0.00 4.81
399 400 3.813166 TCAGAACAAACTTTCGTCATCCC 59.187 43.478 0.00 0.00 0.00 3.85
400 401 4.083802 CCTCAGAACAAACTTTCGTCATCC 60.084 45.833 0.00 0.00 0.00 3.51
401 402 4.511826 ACCTCAGAACAAACTTTCGTCATC 59.488 41.667 0.00 0.00 0.00 2.92
402 403 4.273480 CACCTCAGAACAAACTTTCGTCAT 59.727 41.667 0.00 0.00 0.00 3.06
403 404 3.621268 CACCTCAGAACAAACTTTCGTCA 59.379 43.478 0.00 0.00 0.00 4.35
404 405 3.546218 GCACCTCAGAACAAACTTTCGTC 60.546 47.826 0.00 0.00 0.00 4.20
405 406 2.354821 GCACCTCAGAACAAACTTTCGT 59.645 45.455 0.00 0.00 0.00 3.85
406 407 2.614057 AGCACCTCAGAACAAACTTTCG 59.386 45.455 0.00 0.00 0.00 3.46
407 408 3.627577 TGAGCACCTCAGAACAAACTTTC 59.372 43.478 0.00 0.00 35.39 2.62
408 409 3.620488 TGAGCACCTCAGAACAAACTTT 58.380 40.909 0.00 0.00 35.39 2.66
409 410 3.281727 TGAGCACCTCAGAACAAACTT 57.718 42.857 0.00 0.00 35.39 2.66
410 411 3.498774 ATGAGCACCTCAGAACAAACT 57.501 42.857 1.20 0.00 44.08 2.66
411 412 4.293415 CAAATGAGCACCTCAGAACAAAC 58.707 43.478 1.20 0.00 44.08 2.93
412 413 3.318839 CCAAATGAGCACCTCAGAACAAA 59.681 43.478 1.20 0.00 44.08 2.83
413 414 2.886523 CCAAATGAGCACCTCAGAACAA 59.113 45.455 1.20 0.00 44.08 2.83
414 415 2.106338 TCCAAATGAGCACCTCAGAACA 59.894 45.455 1.20 0.00 44.08 3.18
415 416 2.783135 TCCAAATGAGCACCTCAGAAC 58.217 47.619 1.20 0.00 44.08 3.01
416 417 3.507162 TTCCAAATGAGCACCTCAGAA 57.493 42.857 1.20 0.00 44.08 3.02
417 418 3.726557 ATTCCAAATGAGCACCTCAGA 57.273 42.857 1.20 0.00 44.08 3.27
418 419 4.219070 TGAAATTCCAAATGAGCACCTCAG 59.781 41.667 1.20 0.00 44.08 3.35
419 420 4.151121 TGAAATTCCAAATGAGCACCTCA 58.849 39.130 0.00 0.00 44.99 3.86
420 421 4.789012 TGAAATTCCAAATGAGCACCTC 57.211 40.909 0.00 0.00 0.00 3.85
421 422 5.549742 TTTGAAATTCCAAATGAGCACCT 57.450 34.783 0.00 0.00 31.73 4.00
422 423 6.652062 AGATTTTGAAATTCCAAATGAGCACC 59.348 34.615 9.37 0.00 36.12 5.01
423 424 7.662604 AGATTTTGAAATTCCAAATGAGCAC 57.337 32.000 9.37 0.00 36.12 4.40
424 425 7.308109 GCAAGATTTTGAAATTCCAAATGAGCA 60.308 33.333 9.37 0.00 36.12 4.26
425 426 7.019418 GCAAGATTTTGAAATTCCAAATGAGC 58.981 34.615 9.37 7.06 36.12 4.26
426 427 8.090250 TGCAAGATTTTGAAATTCCAAATGAG 57.910 30.769 9.37 1.95 36.12 2.90
427 428 8.447924 TTGCAAGATTTTGAAATTCCAAATGA 57.552 26.923 9.37 0.00 36.12 2.57
428 429 9.685828 ATTTGCAAGATTTTGAAATTCCAAATG 57.314 25.926 9.37 0.00 36.12 2.32
430 431 9.517609 CAATTTGCAAGATTTTGAAATTCCAAA 57.482 25.926 0.00 0.64 34.96 3.28
431 432 8.136165 CCAATTTGCAAGATTTTGAAATTCCAA 58.864 29.630 0.00 0.00 34.96 3.53
432 433 7.501559 TCCAATTTGCAAGATTTTGAAATTCCA 59.498 29.630 0.00 0.00 34.96 3.53
433 434 7.804600 GTCCAATTTGCAAGATTTTGAAATTCC 59.195 33.333 0.00 0.00 34.96 3.01
434 435 8.344098 TGTCCAATTTGCAAGATTTTGAAATTC 58.656 29.630 0.00 0.00 34.96 2.17
435 436 8.223177 TGTCCAATTTGCAAGATTTTGAAATT 57.777 26.923 0.00 6.71 36.09 1.82
436 437 7.804843 TGTCCAATTTGCAAGATTTTGAAAT 57.195 28.000 0.00 1.33 36.36 2.17
437 438 7.804843 ATGTCCAATTTGCAAGATTTTGAAA 57.195 28.000 0.00 0.00 36.36 2.69
438 439 8.899427 TTATGTCCAATTTGCAAGATTTTGAA 57.101 26.923 0.00 0.00 36.36 2.69
443 444 9.768662 GGATTATTATGTCCAATTTGCAAGATT 57.231 29.630 0.00 0.21 34.57 2.40
444 445 8.084073 CGGATTATTATGTCCAATTTGCAAGAT 58.916 33.333 0.00 0.00 34.05 2.40
445 446 7.284261 TCGGATTATTATGTCCAATTTGCAAGA 59.716 33.333 0.00 0.00 34.05 3.02
446 447 7.424803 TCGGATTATTATGTCCAATTTGCAAG 58.575 34.615 0.00 0.00 34.05 4.01
447 448 7.340122 TCGGATTATTATGTCCAATTTGCAA 57.660 32.000 0.00 0.00 34.05 4.08
448 449 6.951062 TCGGATTATTATGTCCAATTTGCA 57.049 33.333 0.00 0.00 34.05 4.08
449 450 7.592938 TCATCGGATTATTATGTCCAATTTGC 58.407 34.615 0.00 0.00 34.05 3.68
453 454 9.784531 GGATATCATCGGATTATTATGTCCAAT 57.215 33.333 4.83 0.00 34.89 3.16
454 455 8.210946 GGGATATCATCGGATTATTATGTCCAA 58.789 37.037 4.83 0.00 34.89 3.53
455 456 7.471399 CGGGATATCATCGGATTATTATGTCCA 60.471 40.741 4.83 0.00 34.89 4.02
456 457 6.868864 CGGGATATCATCGGATTATTATGTCC 59.131 42.308 4.83 0.00 34.89 4.02
457 458 7.382488 CACGGGATATCATCGGATTATTATGTC 59.618 40.741 17.78 0.00 34.89 3.06
458 459 7.210174 CACGGGATATCATCGGATTATTATGT 58.790 38.462 17.78 0.00 34.89 2.29
459 460 6.646653 CCACGGGATATCATCGGATTATTATG 59.353 42.308 17.78 7.66 34.89 1.90
460 461 6.326583 ACCACGGGATATCATCGGATTATTAT 59.673 38.462 17.78 0.00 34.89 1.28
461 462 5.659525 ACCACGGGATATCATCGGATTATTA 59.340 40.000 17.78 0.00 34.89 0.98
462 463 4.469945 ACCACGGGATATCATCGGATTATT 59.530 41.667 17.78 0.00 34.89 1.40
463 464 4.030913 ACCACGGGATATCATCGGATTAT 58.969 43.478 17.78 0.00 34.89 1.28
464 465 3.437213 ACCACGGGATATCATCGGATTA 58.563 45.455 17.78 0.00 34.89 1.75
465 466 2.257207 ACCACGGGATATCATCGGATT 58.743 47.619 17.78 3.34 34.89 3.01
466 467 1.938585 ACCACGGGATATCATCGGAT 58.061 50.000 17.78 0.00 37.55 4.18
467 468 1.343142 CAACCACGGGATATCATCGGA 59.657 52.381 17.78 0.00 0.00 4.55
468 469 1.795768 CAACCACGGGATATCATCGG 58.204 55.000 17.78 9.45 0.00 4.18
469 470 1.148310 GCAACCACGGGATATCATCG 58.852 55.000 13.73 13.73 0.00 3.84
470 471 1.523758 GGCAACCACGGGATATCATC 58.476 55.000 4.83 0.00 0.00 2.92
471 472 0.250295 CGGCAACCACGGGATATCAT 60.250 55.000 4.83 0.00 0.00 2.45
472 473 1.145156 CGGCAACCACGGGATATCA 59.855 57.895 4.83 0.00 0.00 2.15
473 474 4.043168 CGGCAACCACGGGATATC 57.957 61.111 0.00 0.00 0.00 1.63
489 490 1.065928 GACTGGCTCACCGATACCG 59.934 63.158 0.00 0.00 39.70 4.02
490 491 1.327690 TGGACTGGCTCACCGATACC 61.328 60.000 0.00 0.00 39.70 2.73
491 492 0.179108 GTGGACTGGCTCACCGATAC 60.179 60.000 0.00 0.00 39.70 2.24
492 493 1.663379 CGTGGACTGGCTCACCGATA 61.663 60.000 0.00 0.00 39.70 2.92
493 494 2.982130 GTGGACTGGCTCACCGAT 59.018 61.111 0.00 0.00 39.70 4.18
494 495 3.680786 CGTGGACTGGCTCACCGA 61.681 66.667 0.00 0.00 39.70 4.69
495 496 4.742201 CCGTGGACTGGCTCACCG 62.742 72.222 0.00 0.00 39.70 4.94
496 497 3.591254 GACCGTGGACTGGCTCACC 62.591 68.421 0.00 0.00 0.00 4.02
497 498 2.048127 GACCGTGGACTGGCTCAC 60.048 66.667 0.00 0.00 0.00 3.51
498 499 2.523168 TGACCGTGGACTGGCTCA 60.523 61.111 0.00 0.00 0.00 4.26
499 500 2.262915 CTGACCGTGGACTGGCTC 59.737 66.667 0.00 0.00 0.00 4.70
500 501 4.008933 GCTGACCGTGGACTGGCT 62.009 66.667 0.00 0.00 0.00 4.75
502 503 2.674563 TTTGGCTGACCGTGGACTGG 62.675 60.000 0.00 0.00 39.70 4.00
503 504 0.606401 ATTTGGCTGACCGTGGACTG 60.606 55.000 0.00 0.00 39.70 3.51
504 505 0.606401 CATTTGGCTGACCGTGGACT 60.606 55.000 0.00 0.00 39.70 3.85
505 506 1.586154 CCATTTGGCTGACCGTGGAC 61.586 60.000 0.00 0.00 37.63 4.02
506 507 1.303236 CCATTTGGCTGACCGTGGA 60.303 57.895 0.00 0.00 37.63 4.02
507 508 3.277133 CCATTTGGCTGACCGTGG 58.723 61.111 0.00 0.00 39.70 4.94
530 531 1.815421 CCGTCCGCATCCTTCTTGG 60.815 63.158 0.00 0.00 37.10 3.61
531 532 1.815421 CCCGTCCGCATCCTTCTTG 60.815 63.158 0.00 0.00 0.00 3.02
532 533 1.961180 CTCCCGTCCGCATCCTTCTT 61.961 60.000 0.00 0.00 0.00 2.52
533 534 2.363795 TCCCGTCCGCATCCTTCT 60.364 61.111 0.00 0.00 0.00 2.85
534 535 2.107141 CTCCCGTCCGCATCCTTC 59.893 66.667 0.00 0.00 0.00 3.46
535 536 3.470888 CCTCCCGTCCGCATCCTT 61.471 66.667 0.00 0.00 0.00 3.36
536 537 3.976490 TTCCTCCCGTCCGCATCCT 62.976 63.158 0.00 0.00 0.00 3.24
537 538 2.808206 ATTCCTCCCGTCCGCATCC 61.808 63.158 0.00 0.00 0.00 3.51
538 539 1.595382 CATTCCTCCCGTCCGCATC 60.595 63.158 0.00 0.00 0.00 3.91
539 540 2.032860 CTCATTCCTCCCGTCCGCAT 62.033 60.000 0.00 0.00 0.00 4.73
540 541 2.682136 TCATTCCTCCCGTCCGCA 60.682 61.111 0.00 0.00 0.00 5.69
541 542 2.107141 CTCATTCCTCCCGTCCGC 59.893 66.667 0.00 0.00 0.00 5.54
542 543 1.327690 TTCCTCATTCCTCCCGTCCG 61.328 60.000 0.00 0.00 0.00 4.79
543 544 0.178301 GTTCCTCATTCCTCCCGTCC 59.822 60.000 0.00 0.00 0.00 4.79
544 545 0.179108 CGTTCCTCATTCCTCCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
545 546 1.614241 CCGTTCCTCATTCCTCCCGT 61.614 60.000 0.00 0.00 0.00 5.28
546 547 1.144057 CCGTTCCTCATTCCTCCCG 59.856 63.158 0.00 0.00 0.00 5.14
547 548 0.178301 GTCCGTTCCTCATTCCTCCC 59.822 60.000 0.00 0.00 0.00 4.30
548 549 0.179108 CGTCCGTTCCTCATTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
549 550 0.531200 ACGTCCGTTCCTCATTCCTC 59.469 55.000 0.00 0.00 0.00 3.71
550 551 0.246635 CACGTCCGTTCCTCATTCCT 59.753 55.000 0.00 0.00 0.00 3.36
551 552 1.359459 GCACGTCCGTTCCTCATTCC 61.359 60.000 0.00 0.00 0.00 3.01
552 553 1.683790 CGCACGTCCGTTCCTCATTC 61.684 60.000 0.00 0.00 0.00 2.67
553 554 1.736645 CGCACGTCCGTTCCTCATT 60.737 57.895 0.00 0.00 0.00 2.57
554 555 2.126071 CGCACGTCCGTTCCTCAT 60.126 61.111 0.00 0.00 0.00 2.90
555 556 4.351938 CCGCACGTCCGTTCCTCA 62.352 66.667 0.00 0.00 0.00 3.86
559 560 4.353437 ACTCCCGCACGTCCGTTC 62.353 66.667 0.00 0.00 0.00 3.95
560 561 4.353437 GACTCCCGCACGTCCGTT 62.353 66.667 0.00 0.00 0.00 4.44
562 563 4.351938 TTGACTCCCGCACGTCCG 62.352 66.667 0.00 0.00 0.00 4.79
563 564 2.737376 GTTGACTCCCGCACGTCC 60.737 66.667 0.00 0.00 0.00 4.79
564 565 3.103911 CGTTGACTCCCGCACGTC 61.104 66.667 0.00 0.00 0.00 4.34
565 566 3.553437 CTCGTTGACTCCCGCACGT 62.553 63.158 0.00 0.00 0.00 4.49
566 567 2.805353 CTCGTTGACTCCCGCACG 60.805 66.667 0.00 0.00 0.00 5.34
567 568 3.112709 GCTCGTTGACTCCCGCAC 61.113 66.667 0.00 0.00 0.00 5.34
568 569 2.652382 TTTGCTCGTTGACTCCCGCA 62.652 55.000 0.00 0.00 0.00 5.69
569 570 1.503818 TTTTGCTCGTTGACTCCCGC 61.504 55.000 0.00 0.00 0.00 6.13
570 571 0.941542 TTTTTGCTCGTTGACTCCCG 59.058 50.000 0.00 0.00 0.00 5.14
586 587 7.981142 TCCTAGTAATCTAACTGGTGGTTTTT 58.019 34.615 0.00 0.00 39.17 1.94
587 588 7.237055 ACTCCTAGTAATCTAACTGGTGGTTTT 59.763 37.037 0.00 0.00 39.17 2.43
588 589 6.729569 ACTCCTAGTAATCTAACTGGTGGTTT 59.270 38.462 0.00 0.00 39.17 3.27
589 590 6.154706 CACTCCTAGTAATCTAACTGGTGGTT 59.845 42.308 0.00 0.00 41.54 3.67
590 591 5.657302 CACTCCTAGTAATCTAACTGGTGGT 59.343 44.000 0.00 0.00 0.00 4.16
591 592 5.892119 TCACTCCTAGTAATCTAACTGGTGG 59.108 44.000 0.00 0.00 0.00 4.61
592 593 6.039941 CCTCACTCCTAGTAATCTAACTGGTG 59.960 46.154 0.00 0.00 0.00 4.17
593 594 6.130569 CCTCACTCCTAGTAATCTAACTGGT 58.869 44.000 0.00 0.00 0.00 4.00
594 595 5.010213 GCCTCACTCCTAGTAATCTAACTGG 59.990 48.000 0.00 0.00 0.00 4.00
595 596 5.830991 AGCCTCACTCCTAGTAATCTAACTG 59.169 44.000 0.00 0.00 0.00 3.16
596 597 6.020881 AGCCTCACTCCTAGTAATCTAACT 57.979 41.667 0.00 0.00 0.00 2.24
597 598 8.949177 GTATAGCCTCACTCCTAGTAATCTAAC 58.051 40.741 0.00 0.00 0.00 2.34
598 599 7.823310 CGTATAGCCTCACTCCTAGTAATCTAA 59.177 40.741 0.00 0.00 0.00 2.10
599 600 7.329499 CGTATAGCCTCACTCCTAGTAATCTA 58.671 42.308 0.00 0.00 0.00 1.98
600 601 6.174760 CGTATAGCCTCACTCCTAGTAATCT 58.825 44.000 0.00 0.00 0.00 2.40
601 602 5.163733 GCGTATAGCCTCACTCCTAGTAATC 60.164 48.000 0.00 0.00 40.81 1.75
602 603 4.701171 GCGTATAGCCTCACTCCTAGTAAT 59.299 45.833 0.00 0.00 40.81 1.89
603 604 4.070716 GCGTATAGCCTCACTCCTAGTAA 58.929 47.826 0.00 0.00 40.81 2.24
604 605 3.672808 GCGTATAGCCTCACTCCTAGTA 58.327 50.000 0.00 0.00 40.81 1.82
605 606 2.506444 GCGTATAGCCTCACTCCTAGT 58.494 52.381 0.00 0.00 40.81 2.57
606 607 1.465387 CGCGTATAGCCTCACTCCTAG 59.535 57.143 0.00 0.00 44.76 3.02
607 608 1.202734 ACGCGTATAGCCTCACTCCTA 60.203 52.381 11.67 0.00 44.76 2.94
608 609 0.465824 ACGCGTATAGCCTCACTCCT 60.466 55.000 11.67 0.00 44.76 3.69
609 610 0.384669 AACGCGTATAGCCTCACTCC 59.615 55.000 14.46 0.00 44.76 3.85
610 611 1.065102 TCAACGCGTATAGCCTCACTC 59.935 52.381 14.46 0.00 44.76 3.51
611 612 1.100510 TCAACGCGTATAGCCTCACT 58.899 50.000 14.46 0.00 44.76 3.41
612 613 1.197910 GTCAACGCGTATAGCCTCAC 58.802 55.000 14.46 0.00 44.76 3.51
613 614 0.248336 CGTCAACGCGTATAGCCTCA 60.248 55.000 14.46 0.00 44.76 3.86
614 615 2.492388 CGTCAACGCGTATAGCCTC 58.508 57.895 14.46 0.00 44.76 4.70
615 616 4.704007 CGTCAACGCGTATAGCCT 57.296 55.556 14.46 0.00 44.76 4.58
625 626 8.897457 ATAGTTCATATATTAGAGCGTCAACG 57.103 34.615 0.00 0.00 43.27 4.10
643 644 9.394767 TGCTCTAAGATTTGCATAAATAGTTCA 57.605 29.630 0.00 0.00 36.66 3.18
646 647 9.401058 AGTTGCTCTAAGATTTGCATAAATAGT 57.599 29.630 0.00 0.00 36.66 2.12
647 648 9.875675 GAGTTGCTCTAAGATTTGCATAAATAG 57.124 33.333 0.00 0.00 36.66 1.73
648 649 8.840321 GGAGTTGCTCTAAGATTTGCATAAATA 58.160 33.333 0.00 0.00 36.66 1.40
649 650 7.340232 TGGAGTTGCTCTAAGATTTGCATAAAT 59.660 33.333 0.00 0.00 39.16 1.40
650 651 6.658816 TGGAGTTGCTCTAAGATTTGCATAAA 59.341 34.615 0.00 0.00 35.27 1.40
651 652 6.179756 TGGAGTTGCTCTAAGATTTGCATAA 58.820 36.000 0.00 0.00 35.27 1.90
652 653 5.744171 TGGAGTTGCTCTAAGATTTGCATA 58.256 37.500 0.00 0.00 35.27 3.14
653 654 4.592942 TGGAGTTGCTCTAAGATTTGCAT 58.407 39.130 0.00 0.00 35.27 3.96
654 655 4.019792 TGGAGTTGCTCTAAGATTTGCA 57.980 40.909 0.00 0.00 0.00 4.08
655 656 4.670221 CGTTGGAGTTGCTCTAAGATTTGC 60.670 45.833 0.00 0.00 31.92 3.68
656 657 4.690748 TCGTTGGAGTTGCTCTAAGATTTG 59.309 41.667 0.00 0.00 31.92 2.32
657 658 4.691216 GTCGTTGGAGTTGCTCTAAGATTT 59.309 41.667 0.00 0.00 31.92 2.17
658 659 4.246458 GTCGTTGGAGTTGCTCTAAGATT 58.754 43.478 0.00 0.00 31.92 2.40
659 660 3.673594 CGTCGTTGGAGTTGCTCTAAGAT 60.674 47.826 0.00 0.00 31.92 2.40
660 661 2.351447 CGTCGTTGGAGTTGCTCTAAGA 60.351 50.000 0.00 0.00 31.92 2.10
661 662 1.986378 CGTCGTTGGAGTTGCTCTAAG 59.014 52.381 0.00 0.00 31.92 2.18
662 663 1.338973 ACGTCGTTGGAGTTGCTCTAA 59.661 47.619 0.00 0.00 0.00 2.10
663 664 0.956633 ACGTCGTTGGAGTTGCTCTA 59.043 50.000 0.00 0.00 0.00 2.43
664 665 0.104304 AACGTCGTTGGAGTTGCTCT 59.896 50.000 10.39 0.00 0.00 4.09
665 666 0.935196 AAACGTCGTTGGAGTTGCTC 59.065 50.000 12.12 0.00 0.00 4.26
666 667 0.935196 GAAACGTCGTTGGAGTTGCT 59.065 50.000 12.12 0.00 0.00 3.91
667 668 0.935196 AGAAACGTCGTTGGAGTTGC 59.065 50.000 12.12 0.00 0.00 4.17
668 669 1.931172 ACAGAAACGTCGTTGGAGTTG 59.069 47.619 12.12 8.38 0.00 3.16
669 670 2.199236 GACAGAAACGTCGTTGGAGTT 58.801 47.619 12.12 0.00 0.00 3.01
670 671 1.537562 GGACAGAAACGTCGTTGGAGT 60.538 52.381 12.12 10.06 36.73 3.85
671 672 1.137513 GGACAGAAACGTCGTTGGAG 58.862 55.000 12.12 6.87 36.73 3.86
672 673 0.595567 CGGACAGAAACGTCGTTGGA 60.596 55.000 12.12 0.00 36.73 3.53
673 674 1.850640 CGGACAGAAACGTCGTTGG 59.149 57.895 12.12 7.22 36.73 3.77
674 675 1.200839 GCGGACAGAAACGTCGTTG 59.799 57.895 12.12 2.41 36.73 4.10
675 676 0.529119 AAGCGGACAGAAACGTCGTT 60.529 50.000 4.40 4.40 36.73 3.85
679 680 1.741145 ACAAAAAGCGGACAGAAACGT 59.259 42.857 0.00 0.00 0.00 3.99
685 686 0.661020 AACGGACAAAAAGCGGACAG 59.339 50.000 0.00 0.00 0.00 3.51
733 734 2.092323 GCCGACCCAAAGCTAAAAGAT 58.908 47.619 0.00 0.00 0.00 2.40
742 743 3.726517 CGCACTGCCGACCCAAAG 61.727 66.667 0.00 0.00 0.00 2.77
788 791 0.787908 GCACGATGTTAAACACGCGG 60.788 55.000 12.47 1.27 34.75 6.46
812 817 0.608035 TAGAGCGCCAAAACCAAGGG 60.608 55.000 2.29 0.00 0.00 3.95
815 820 1.234821 CACTAGAGCGCCAAAACCAA 58.765 50.000 2.29 0.00 0.00 3.67
830 835 1.375013 GAACCTTTCCCGCGCACTA 60.375 57.895 8.75 0.00 0.00 2.74
878 890 2.855514 GCTGGAGCGCCAAAACCAA 61.856 57.895 11.38 0.00 45.41 3.67
996 1008 1.749063 AGACAGCGAATCGACATGGTA 59.251 47.619 6.91 0.00 0.00 3.25
1012 1024 2.463589 AAATCCGAAGCGCCCAGACA 62.464 55.000 2.29 0.00 0.00 3.41
1014 1026 1.002624 AAAATCCGAAGCGCCCAGA 60.003 52.632 2.29 0.00 0.00 3.86
1162 1175 2.835431 CCGACGAGGCCTCAGGAT 60.835 66.667 31.67 14.21 0.00 3.24
1359 1747 0.670546 GCTTGTAGAACTGGCGCTCA 60.671 55.000 7.64 2.39 0.00 4.26
1665 2126 4.880537 CACTCGCCCGCCTGCTAG 62.881 72.222 0.00 0.00 0.00 3.42
1743 2204 2.028484 GTGCGGACACAAGACGGA 59.972 61.111 0.63 0.00 46.61 4.69
1772 2235 2.282039 CCGGCCCATTTTTGAGCCA 61.282 57.895 0.00 0.00 46.08 4.75
1883 2346 1.969589 GACCCATTTTGTCCGCGGT 60.970 57.895 27.15 0.06 0.00 5.68
1892 2355 1.072505 ACCGACAGCGACCCATTTT 59.927 52.632 0.00 0.00 40.82 1.82
2086 2552 3.252351 AGGGTTTAGCCTCTCTGAACTT 58.748 45.455 0.00 0.00 40.14 2.66
2089 2555 4.332683 TCTAGGGTTTAGCCTCTCTGAA 57.667 45.455 3.32 0.00 37.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.