Multiple sequence alignment - TraesCS2A01G524300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G524300 chr2A 100.000 4515 0 0 1 4515 745268178 745263664 0.000000e+00 8338
1 TraesCS2A01G524300 chr2A 84.563 2481 360 10 1119 3580 27969935 27967459 0.000000e+00 2438
2 TraesCS2A01G524300 chr2A 84.211 456 60 9 3160 3609 745264929 745264480 2.490000e-117 433
3 TraesCS2A01G524300 chr2B 96.128 3771 126 12 754 4515 749421866 749418107 0.000000e+00 6137
4 TraesCS2A01G524300 chr2B 84.421 2574 375 12 1131 3682 41147452 41144883 0.000000e+00 2508
5 TraesCS2A01G524300 chr2B 88.993 536 51 6 3148 3679 749419443 749418912 0.000000e+00 656
6 TraesCS2A01G524300 chr2B 82.847 548 84 8 3178 3720 749419473 749418931 2.440000e-132 483
7 TraesCS2A01G524300 chr2B 83.968 499 72 5 3208 3702 749419473 749418979 5.290000e-129 472
8 TraesCS2A01G524300 chr2D 95.517 2409 94 12 1289 3690 615063362 615060961 0.000000e+00 3838
9 TraesCS2A01G524300 chr2D 84.809 2508 356 12 1093 3580 25354603 25352101 0.000000e+00 2497
10 TraesCS2A01G524300 chr2D 97.160 1338 36 1 3178 4515 615061503 615060168 0.000000e+00 2259
11 TraesCS2A01G524300 chr2D 95.865 532 16 2 748 1279 615064193 615063668 0.000000e+00 856
12 TraesCS2A01G524300 chr2D 84.188 468 62 9 3148 3609 615061443 615060982 1.150000e-120 444
13 TraesCS2A01G524300 chr2D 82.239 518 82 8 3208 3720 615061503 615060991 5.360000e-119 438
14 TraesCS2A01G524300 chr5A 98.003 751 15 0 1 751 563465882 563465132 0.000000e+00 1304
15 TraesCS2A01G524300 chr7B 95.600 750 29 4 2 751 516487103 516486358 0.000000e+00 1199


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G524300 chr2A 745263664 745268178 4514 True 4385.5 8338 92.1055 1 4515 2 chr2A.!!$R2 4514
1 TraesCS2A01G524300 chr2A 27967459 27969935 2476 True 2438.0 2438 84.5630 1119 3580 1 chr2A.!!$R1 2461
2 TraesCS2A01G524300 chr2B 41144883 41147452 2569 True 2508.0 2508 84.4210 1131 3682 1 chr2B.!!$R1 2551
3 TraesCS2A01G524300 chr2B 749418107 749421866 3759 True 1937.0 6137 87.9840 754 4515 4 chr2B.!!$R2 3761
4 TraesCS2A01G524300 chr2D 25352101 25354603 2502 True 2497.0 2497 84.8090 1093 3580 1 chr2D.!!$R1 2487
5 TraesCS2A01G524300 chr2D 615060168 615064193 4025 True 1567.0 3838 90.9938 748 4515 5 chr2D.!!$R2 3767
6 TraesCS2A01G524300 chr5A 563465132 563465882 750 True 1304.0 1304 98.0030 1 751 1 chr5A.!!$R1 750
7 TraesCS2A01G524300 chr7B 516486358 516487103 745 True 1199.0 1199 95.6000 2 751 1 chr7B.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 931 0.529378 CTGAGCCCATTTGGTTCTGC 59.471 55.000 0.0 0.0 44.3 4.26 F
1611 1911 1.706575 CTCCTTCTCCCCCTCCTCA 59.293 63.158 0.0 0.0 0.0 3.86 F
3286 3754 0.105778 GCAGCCAGGGTATGACTCTC 59.894 60.000 0.0 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2325 1.014044 TGTTGACGCCGATGAAGCTC 61.014 55.0 0.00 0.0 0.00 4.09 R
3471 4029 0.107312 CATAACCTGGCTGCTGCTCT 60.107 55.0 15.64 0.0 39.59 4.09 R
4308 4869 1.424493 CTCCGGCTGTTCTTGATCGC 61.424 60.0 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 222 8.568794 TCTTCCAGATTACATTCATCTAGTACG 58.431 37.037 0.00 0.00 29.36 3.67
244 245 2.686405 CTCTAAAAGCCTGCATGCATCA 59.314 45.455 22.97 0.00 0.00 3.07
362 363 3.372025 GCCCTCTCAAGTAATCCCATGTT 60.372 47.826 0.00 0.00 0.00 2.71
388 389 1.063654 TTCCGGTCTCCCCTTGGTTT 61.064 55.000 0.00 0.00 0.00 3.27
423 424 0.552848 AAACCTCCATCCCGATGCAT 59.447 50.000 0.00 0.00 37.49 3.96
547 548 3.118000 TCGCTTACTGAGACCTCTATCCA 60.118 47.826 0.00 0.00 0.00 3.41
699 700 1.780503 GCCCTGGCAATTCCAACTAT 58.219 50.000 2.58 0.00 46.01 2.12
756 757 1.741770 GAAGCTTGCACGTCGGGAT 60.742 57.895 2.10 0.00 0.00 3.85
777 778 5.238214 GGATCTCTTTAGCATTCATGGTGAC 59.762 44.000 1.64 0.00 39.14 3.67
841 842 1.834188 AATAGGTTGGGTTTGGAGCG 58.166 50.000 0.00 0.00 0.00 5.03
879 880 4.926140 AACAAAAGCCCAAGAGAGAAAG 57.074 40.909 0.00 0.00 0.00 2.62
880 881 4.170468 ACAAAAGCCCAAGAGAGAAAGA 57.830 40.909 0.00 0.00 0.00 2.52
928 931 0.529378 CTGAGCCCATTTGGTTCTGC 59.471 55.000 0.00 0.00 44.30 4.26
969 973 3.039526 CCTCCTCTCCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
970 974 2.612251 CTCCTCTCCCCTCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
971 975 3.036959 TCCTCTCCCCTCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
972 976 4.179599 CCTCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
973 977 4.179599 CTCTCCCCTCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1051 1055 3.934962 GCCGCCTCTCCATCTCCC 61.935 72.222 0.00 0.00 0.00 4.30
1609 1909 1.869452 ACCTCCTTCTCCCCCTCCT 60.869 63.158 0.00 0.00 0.00 3.69
1611 1911 1.706575 CTCCTTCTCCCCCTCCTCA 59.293 63.158 0.00 0.00 0.00 3.86
2025 2325 3.656045 GACAACCACAACCCGCCG 61.656 66.667 0.00 0.00 0.00 6.46
2206 2506 0.747255 GAACGGGATGCTAGCAGAGA 59.253 55.000 23.89 0.00 0.00 3.10
2291 2591 0.730834 CTGGTCGACTCGTGCTTCAG 60.731 60.000 16.46 7.61 0.00 3.02
2310 2610 1.149174 GGATGGCCGTGTGGATGAT 59.851 57.895 0.00 0.00 37.49 2.45
2426 2726 0.820891 GCTGGCCGGATTGATGATGT 60.821 55.000 18.31 0.00 0.00 3.06
2637 2937 1.202627 GCTGATCGCCAGGAAGAGATT 60.203 52.381 0.00 0.00 43.13 2.40
2749 3061 4.501714 CGCCGGGTAGCTACGCAA 62.502 66.667 32.48 0.00 38.87 4.85
3233 3701 2.092212 CAGGGTATGGCTCTCACCAAAT 60.092 50.000 0.00 0.00 44.65 2.32
3281 3749 2.591753 GCAGCAGCCAGGGTATGA 59.408 61.111 7.13 0.00 33.58 2.15
3282 3750 1.821332 GCAGCAGCCAGGGTATGAC 60.821 63.158 7.13 0.00 33.58 3.06
3283 3751 1.910722 CAGCAGCCAGGGTATGACT 59.089 57.895 0.00 0.00 0.00 3.41
3284 3752 0.179062 CAGCAGCCAGGGTATGACTC 60.179 60.000 0.00 0.00 0.00 3.36
3285 3753 0.326048 AGCAGCCAGGGTATGACTCT 60.326 55.000 0.00 0.00 0.00 3.24
3286 3754 0.105778 GCAGCCAGGGTATGACTCTC 59.894 60.000 0.00 0.00 0.00 3.20
3287 3755 1.489481 CAGCCAGGGTATGACTCTCA 58.511 55.000 0.00 0.00 0.00 3.27
3288 3756 1.411977 CAGCCAGGGTATGACTCTCAG 59.588 57.143 0.00 0.00 0.00 3.35
3289 3757 0.105778 GCCAGGGTATGACTCTCAGC 59.894 60.000 0.00 0.00 0.00 4.26
3290 3758 1.489481 CCAGGGTATGACTCTCAGCA 58.511 55.000 0.00 0.00 0.00 4.41
3291 3759 1.833630 CCAGGGTATGACTCTCAGCAA 59.166 52.381 0.00 0.00 0.00 3.91
3292 3760 2.158986 CCAGGGTATGACTCTCAGCAAG 60.159 54.545 0.00 0.00 0.00 4.01
3293 3761 1.484240 AGGGTATGACTCTCAGCAAGC 59.516 52.381 0.00 0.00 0.00 4.01
3294 3762 1.565305 GGTATGACTCTCAGCAAGCG 58.435 55.000 0.00 0.00 0.00 4.68
3295 3763 0.926846 GTATGACTCTCAGCAAGCGC 59.073 55.000 0.00 0.00 38.99 5.92
3296 3764 0.532115 TATGACTCTCAGCAAGCGCA 59.468 50.000 11.47 0.00 42.27 6.09
3297 3765 0.740164 ATGACTCTCAGCAAGCGCAG 60.740 55.000 11.47 2.01 42.27 5.18
3310 3778 2.898840 CGCAGCAGCCCAGGTATG 60.899 66.667 0.00 0.00 37.52 2.39
3443 4001 2.104451 CAGGATATGGCTCTCAGCAAGT 59.896 50.000 0.00 0.00 44.75 3.16
3444 4002 2.104451 AGGATATGGCTCTCAGCAAGTG 59.896 50.000 0.00 0.00 44.75 3.16
3445 4003 1.872313 GATATGGCTCTCAGCAAGTGC 59.128 52.381 0.00 0.00 44.75 4.40
3446 4004 0.614812 TATGGCTCTCAGCAAGTGCA 59.385 50.000 6.00 0.00 44.75 4.57
3447 4005 0.251033 ATGGCTCTCAGCAAGTGCAA 60.251 50.000 6.00 4.60 44.75 4.08
3448 4006 1.168407 TGGCTCTCAGCAAGTGCAAC 61.168 55.000 6.00 1.00 44.75 4.17
3449 4007 1.168407 GGCTCTCAGCAAGTGCAACA 61.168 55.000 6.00 0.00 44.75 3.33
3450 4008 0.664761 GCTCTCAGCAAGTGCAACAA 59.335 50.000 6.00 0.00 42.73 2.83
3451 4009 1.066002 GCTCTCAGCAAGTGCAACAAA 59.934 47.619 6.00 0.00 42.73 2.83
3452 4010 2.724349 CTCTCAGCAAGTGCAACAAAC 58.276 47.619 6.00 0.00 45.16 2.93
3453 4011 2.090760 TCTCAGCAAGTGCAACAAACA 58.909 42.857 6.00 0.00 45.16 2.83
3454 4012 2.097954 TCTCAGCAAGTGCAACAAACAG 59.902 45.455 6.00 0.00 45.16 3.16
3455 4013 1.134753 TCAGCAAGTGCAACAAACAGG 59.865 47.619 6.00 0.00 45.16 4.00
3456 4014 0.461135 AGCAAGTGCAACAAACAGGG 59.539 50.000 6.00 0.00 45.16 4.45
3457 4015 0.175531 GCAAGTGCAACAAACAGGGT 59.824 50.000 0.00 0.00 41.43 4.34
3458 4016 1.407258 GCAAGTGCAACAAACAGGGTA 59.593 47.619 0.00 0.00 41.43 3.69
3459 4017 2.035832 GCAAGTGCAACAAACAGGGTAT 59.964 45.455 0.00 0.00 41.43 2.73
3460 4018 3.641648 CAAGTGCAACAAACAGGGTATG 58.358 45.455 0.00 0.00 41.43 2.39
3461 4019 2.238521 AGTGCAACAAACAGGGTATGG 58.761 47.619 0.00 0.00 41.43 2.74
3462 4020 0.965439 TGCAACAAACAGGGTATGGC 59.035 50.000 0.00 0.00 0.00 4.40
3463 4021 1.256812 GCAACAAACAGGGTATGGCT 58.743 50.000 0.00 0.00 0.00 4.75
3464 4022 1.202348 GCAACAAACAGGGTATGGCTC 59.798 52.381 0.00 0.00 0.00 4.70
3465 4023 2.795329 CAACAAACAGGGTATGGCTCT 58.205 47.619 0.00 0.00 0.00 4.09
3466 4024 2.749621 CAACAAACAGGGTATGGCTCTC 59.250 50.000 0.00 0.00 0.00 3.20
3467 4025 1.985159 ACAAACAGGGTATGGCTCTCA 59.015 47.619 0.00 0.00 0.00 3.27
3468 4026 2.026822 ACAAACAGGGTATGGCTCTCAG 60.027 50.000 0.00 0.00 0.00 3.35
3469 4027 0.543749 AACAGGGTATGGCTCTCAGC 59.456 55.000 0.00 0.00 41.46 4.26
3470 4028 0.618680 ACAGGGTATGGCTCTCAGCA 60.619 55.000 0.00 0.00 44.75 4.41
3471 4029 0.543277 CAGGGTATGGCTCTCAGCAA 59.457 55.000 0.00 0.00 44.75 3.91
3472 4030 0.835941 AGGGTATGGCTCTCAGCAAG 59.164 55.000 0.00 0.00 44.75 4.01
3473 4031 0.833287 GGGTATGGCTCTCAGCAAGA 59.167 55.000 0.00 0.00 44.75 3.02
3752 4313 1.699083 TCCTGAAGCACCACAATCTGA 59.301 47.619 0.00 0.00 0.00 3.27
3754 4315 2.497138 CTGAAGCACCACAATCTGACA 58.503 47.619 0.00 0.00 0.00 3.58
4180 4741 4.274705 CCCCTTATTTTTGTTGTTTGTGCC 59.725 41.667 0.00 0.00 0.00 5.01
4248 4809 1.214589 GCTTGCAGGGCATTGTGAG 59.785 57.895 8.54 0.00 38.76 3.51
4249 4810 1.214589 CTTGCAGGGCATTGTGAGC 59.785 57.895 0.00 0.00 38.76 4.26
4308 4869 4.400251 ACATGGATGCAAATGTCTGTTAGG 59.600 41.667 7.10 0.00 31.33 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 222 2.086869 TGCATGCAGGCTTTTAGAGAC 58.913 47.619 25.23 0.00 34.04 3.36
244 245 0.261696 GGGTAACATCAGGCCCCAAT 59.738 55.000 0.00 0.00 35.32 3.16
362 363 2.822215 GGGAGACCGGAAGCATCTA 58.178 57.895 9.46 0.00 43.64 1.98
388 389 2.377193 AGGTTTACTGGGTTGTATGGCA 59.623 45.455 0.00 0.00 0.00 4.92
547 548 4.095185 TCAAACGACGGTTGAAGTTTTCAT 59.905 37.500 25.23 0.00 39.84 2.57
666 667 0.247185 CAGGGCATGCAAAAATCCGT 59.753 50.000 21.36 0.00 0.00 4.69
699 700 4.068599 TGTCCTGTCGCAATGAAAATACA 58.931 39.130 0.00 0.00 0.00 2.29
756 757 4.081697 TCGTCACCATGAATGCTAAAGAGA 60.082 41.667 0.00 0.00 0.00 3.10
824 825 0.475044 AACGCTCCAAACCCAACCTA 59.525 50.000 0.00 0.00 0.00 3.08
841 842 6.033937 GCTTTTGTTTCACTCTCAACTCAAAC 59.966 38.462 0.00 0.00 0.00 2.93
879 880 0.112412 TTGGTTTTGGCCCCTCTCTC 59.888 55.000 0.00 0.00 0.00 3.20
880 881 0.178961 GTTGGTTTTGGCCCCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
928 931 2.711542 GGGGTAGGATTTGTGTGTCAG 58.288 52.381 0.00 0.00 0.00 3.51
1051 1055 1.826024 CGAGGTGGGATTGGGAGAG 59.174 63.158 0.00 0.00 0.00 3.20
1609 1909 1.681327 GGTGGCGGTAGGAGACTGA 60.681 63.158 0.00 0.00 43.88 3.41
2025 2325 1.014044 TGTTGACGCCGATGAAGCTC 61.014 55.000 0.00 0.00 0.00 4.09
2291 2591 2.343475 ATCATCCACACGGCCATCCC 62.343 60.000 2.24 0.00 0.00 3.85
2310 2610 6.629128 CATTTTGTGGAAATACTGCATGGTA 58.371 36.000 0.00 0.00 35.79 3.25
2358 2658 8.540397 GATTGAAGAAAGCGATATTGAACTTC 57.460 34.615 0.00 0.00 34.87 3.01
2426 2726 4.626287 GCATCCTTCCATACACCTTCAAGA 60.626 45.833 0.00 0.00 0.00 3.02
2749 3061 2.375509 AGCCTAGTTTGCCTTGGTTAGT 59.624 45.455 0.00 0.00 38.24 2.24
3233 3701 2.111669 CATATCCGGGCTGCTGCA 59.888 61.111 17.89 0.88 41.91 4.41
3281 3749 2.741598 GCTGCGCTTGCTGAGAGT 60.742 61.111 9.73 0.00 39.69 3.24
3282 3750 2.741211 TGCTGCGCTTGCTGAGAG 60.741 61.111 22.08 5.28 39.69 3.20
3283 3751 2.741211 CTGCTGCGCTTGCTGAGA 60.741 61.111 22.08 5.76 39.69 3.27
3284 3752 4.462417 GCTGCTGCGCTTGCTGAG 62.462 66.667 26.46 17.64 39.69 3.35
3293 3761 2.898840 CATACCTGGGCTGCTGCG 60.899 66.667 9.65 0.00 40.82 5.18
3294 3762 2.517875 CCATACCTGGGCTGCTGC 60.518 66.667 7.10 7.10 39.04 5.25
3301 3769 1.340399 TGCTGAGAGCCATACCTGGG 61.340 60.000 0.00 0.00 43.36 4.45
3302 3770 0.543277 TTGCTGAGAGCCATACCTGG 59.457 55.000 0.00 0.00 46.17 4.45
3303 3771 1.474677 CCTTGCTGAGAGCCATACCTG 60.475 57.143 0.00 0.00 41.51 4.00
3304 3772 0.835941 CCTTGCTGAGAGCCATACCT 59.164 55.000 0.00 0.00 41.51 3.08
3305 3773 0.543749 ACCTTGCTGAGAGCCATACC 59.456 55.000 0.00 0.00 41.51 2.73
3306 3774 1.208052 TGACCTTGCTGAGAGCCATAC 59.792 52.381 0.00 0.00 41.51 2.39
3307 3775 1.571955 TGACCTTGCTGAGAGCCATA 58.428 50.000 0.00 0.00 41.51 2.74
3308 3776 0.694771 TTGACCTTGCTGAGAGCCAT 59.305 50.000 0.00 0.00 41.51 4.40
3309 3777 0.250467 GTTGACCTTGCTGAGAGCCA 60.250 55.000 0.00 0.00 41.51 4.75
3310 3778 0.250467 TGTTGACCTTGCTGAGAGCC 60.250 55.000 0.00 0.00 41.51 4.70
3443 4001 0.965439 GCCATACCCTGTTTGTTGCA 59.035 50.000 0.00 0.00 0.00 4.08
3444 4002 1.202348 GAGCCATACCCTGTTTGTTGC 59.798 52.381 0.00 0.00 0.00 4.17
3445 4003 2.749621 GAGAGCCATACCCTGTTTGTTG 59.250 50.000 0.00 0.00 0.00 3.33
3446 4004 2.375174 TGAGAGCCATACCCTGTTTGTT 59.625 45.455 0.00 0.00 0.00 2.83
3447 4005 1.985159 TGAGAGCCATACCCTGTTTGT 59.015 47.619 0.00 0.00 0.00 2.83
3448 4006 2.636830 CTGAGAGCCATACCCTGTTTG 58.363 52.381 0.00 0.00 0.00 2.93
3449 4007 1.065126 GCTGAGAGCCATACCCTGTTT 60.065 52.381 0.00 0.00 34.48 2.83
3450 4008 0.543749 GCTGAGAGCCATACCCTGTT 59.456 55.000 0.00 0.00 34.48 3.16
3451 4009 0.618680 TGCTGAGAGCCATACCCTGT 60.619 55.000 0.00 0.00 41.51 4.00
3452 4010 0.543277 TTGCTGAGAGCCATACCCTG 59.457 55.000 0.00 0.00 41.51 4.45
3453 4011 0.835941 CTTGCTGAGAGCCATACCCT 59.164 55.000 0.00 0.00 41.51 4.34
3454 4012 0.833287 TCTTGCTGAGAGCCATACCC 59.167 55.000 0.00 0.00 41.51 3.69
3455 4013 2.237393 CTCTTGCTGAGAGCCATACC 57.763 55.000 5.02 0.00 45.05 2.73
3463 4021 1.375652 GCTGCTGCTCTTGCTGAGA 60.376 57.895 8.53 1.46 45.39 3.27
3464 4022 2.400158 GGCTGCTGCTCTTGCTGAG 61.400 63.158 15.64 3.46 45.33 3.35
3465 4023 2.359602 GGCTGCTGCTCTTGCTGA 60.360 61.111 15.64 0.00 40.01 4.26
3466 4024 2.671963 TGGCTGCTGCTCTTGCTG 60.672 61.111 15.64 0.00 40.48 4.41
3467 4025 2.360100 CTGGCTGCTGCTCTTGCT 60.360 61.111 15.64 0.00 40.48 3.91
3468 4026 3.441290 CCTGGCTGCTGCTCTTGC 61.441 66.667 15.64 0.00 39.59 4.01
3469 4027 0.321919 TAACCTGGCTGCTGCTCTTG 60.322 55.000 15.64 4.72 39.59 3.02
3470 4028 0.622665 ATAACCTGGCTGCTGCTCTT 59.377 50.000 15.64 4.55 39.59 2.85
3471 4029 0.107312 CATAACCTGGCTGCTGCTCT 60.107 55.000 15.64 0.00 39.59 4.09
3472 4030 1.099879 CCATAACCTGGCTGCTGCTC 61.100 60.000 15.64 6.34 38.47 4.26
3473 4031 1.077212 CCATAACCTGGCTGCTGCT 60.077 57.895 15.64 0.00 38.47 4.24
3512 4070 0.978667 TTGGTGCGAGCCATACCCTA 60.979 55.000 0.00 0.00 38.48 3.53
3610 4171 1.598130 GCTGTTCCGCTTGGTGAGT 60.598 57.895 0.00 0.00 0.00 3.41
3752 4313 1.672356 GTCCGAGCACTGCCAATGT 60.672 57.895 0.00 0.00 0.00 2.71
3754 4315 1.078848 GAGTCCGAGCACTGCCAAT 60.079 57.895 0.00 0.00 0.00 3.16
4180 4741 8.727910 GGGGTCTACAAGTAAATTAAAACAGAG 58.272 37.037 0.00 0.00 0.00 3.35
4248 4809 3.952535 ACAAAGACGACAGAATTGTTGC 58.047 40.909 0.00 0.00 41.62 4.17
4249 4810 5.229887 CCAAACAAAGACGACAGAATTGTTG 59.770 40.000 3.29 0.00 41.79 3.33
4308 4869 1.424493 CTCCGGCTGTTCTTGATCGC 61.424 60.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.