Multiple sequence alignment - TraesCS2A01G523200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G523200 chr2A 100.000 4502 0 0 1 4502 745005299 745000798 0.000000e+00 8314.0
1 TraesCS2A01G523200 chr2D 91.016 2638 176 34 329 2951 613333953 613331362 0.000000e+00 3502.0
2 TraesCS2A01G523200 chr2D 93.649 866 36 8 3503 4362 613330756 613329904 0.000000e+00 1277.0
3 TraesCS2A01G523200 chr2D 85.514 214 26 4 3301 3511 613331016 613330805 7.580000e-53 219.0
4 TraesCS2A01G523200 chr2D 85.350 157 21 2 3704 3858 613327442 613327286 1.300000e-35 161.0
5 TraesCS2A01G523200 chr2D 91.964 112 7 2 3183 3293 629724371 629724481 6.030000e-34 156.0
6 TraesCS2A01G523200 chr2D 90.991 111 8 2 3184 3293 622370716 622370825 1.010000e-31 148.0
7 TraesCS2A01G523200 chr2D 93.617 47 1 1 4314 4360 580791782 580791826 8.080000e-08 69.4
8 TraesCS2A01G523200 chr2B 91.619 1754 107 25 1220 2951 748711326 748709591 0.000000e+00 2388.0
9 TraesCS2A01G523200 chr2B 94.688 433 15 4 3503 3932 748708662 748708235 0.000000e+00 665.0
10 TraesCS2A01G523200 chr2B 96.732 306 10 0 3206 3511 748709016 748708711 1.120000e-140 510.0
11 TraesCS2A01G523200 chr2B 96.916 227 6 1 2954 3180 748709514 748709289 3.290000e-101 379.0
12 TraesCS2A01G523200 chr2B 84.184 392 39 13 761 1149 748711742 748711371 4.280000e-95 359.0
13 TraesCS2A01G523200 chr2B 87.324 71 7 2 3881 3950 770164801 770164732 3.730000e-11 80.5
14 TraesCS2A01G523200 chr7D 91.557 379 28 4 3870 4245 481184659 481184282 1.860000e-143 520.0
15 TraesCS2A01G523200 chr7D 90.435 115 8 3 3180 3293 533622691 533622803 1.010000e-31 148.0
16 TraesCS2A01G523200 chr3D 93.165 278 17 2 3870 4145 417787890 417787613 1.510000e-109 407.0
17 TraesCS2A01G523200 chr3D 94.326 141 3 1 4362 4502 186618776 186618641 1.270000e-50 211.0
18 TraesCS2A01G523200 chr4D 87.956 274 14 2 3870 4142 252185165 252185420 5.660000e-79 305.0
19 TraesCS2A01G523200 chr4D 84.762 105 12 3 4362 4463 324087980 324087877 7.970000e-18 102.0
20 TraesCS2A01G523200 chr6D 92.908 141 4 2 4362 4501 420628452 420628587 2.750000e-47 200.0
21 TraesCS2A01G523200 chr6A 91.549 142 6 2 4362 4502 29023383 29023519 1.650000e-44 191.0
22 TraesCS2A01G523200 chr6A 92.063 126 4 2 4378 4502 29023559 29023679 5.990000e-39 172.0
23 TraesCS2A01G523200 chr6A 89.286 140 9 2 4364 4502 29024248 29024382 2.150000e-38 171.0
24 TraesCS2A01G523200 chr1D 93.333 105 6 1 3190 3293 10281236 10281340 2.170000e-33 154.0
25 TraesCS2A01G523200 chr1D 75.940 133 14 14 186 302 450112653 450112523 8.000000e-03 52.8
26 TraesCS2A01G523200 chr5D 93.333 105 4 3 3190 3293 320323945 320324047 7.800000e-33 152.0
27 TraesCS2A01G523200 chr5D 90.179 112 9 2 3183 3293 384783383 384783493 1.310000e-30 145.0
28 TraesCS2A01G523200 chr5D 89.091 55 2 3 4314 4366 129474031 129473979 1.050000e-06 65.8
29 TraesCS2A01G523200 chr3A 90.435 115 8 3 3180 3293 739975047 739974935 1.010000e-31 148.0
30 TraesCS2A01G523200 chr3A 86.154 65 7 2 3876 3939 123333730 123333667 8.080000e-08 69.4
31 TraesCS2A01G523200 chr3A 88.679 53 1 4 4309 4360 557105328 557105280 4.860000e-05 60.2
32 TraesCS2A01G523200 chr5B 90.179 112 9 2 3184 3294 160554394 160554284 1.310000e-30 145.0
33 TraesCS2A01G523200 chr5B 85.507 69 5 4 4301 4367 556774935 556775000 2.910000e-07 67.6
34 TraesCS2A01G523200 chr4A 90.566 53 3 1 4308 4360 624365994 624366044 8.080000e-08 69.4
35 TraesCS2A01G523200 chr4A 100.000 34 0 0 4362 4395 82617033 82617066 3.760000e-06 63.9
36 TraesCS2A01G523200 chr5A 93.478 46 1 1 4314 4359 169805394 169805351 2.910000e-07 67.6
37 TraesCS2A01G523200 chr5A 84.615 65 4 6 4302 4362 628102468 628102530 4.860000e-05 60.2
38 TraesCS2A01G523200 chr7B 84.375 64 9 1 4308 4370 687412614 687412677 1.350000e-05 62.1
39 TraesCS2A01G523200 chr1B 91.111 45 4 0 4359 4403 543826561 543826517 1.350000e-05 62.1
40 TraesCS2A01G523200 chr6B 94.595 37 2 0 4358 4394 198983546 198983582 1.750000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G523200 chr2A 745000798 745005299 4501 True 8314.00 8314 100.00000 1 4502 1 chr2A.!!$R1 4501
1 TraesCS2A01G523200 chr2D 613327286 613333953 6667 True 1289.75 3502 88.88225 329 4362 4 chr2D.!!$R1 4033
2 TraesCS2A01G523200 chr2B 748708235 748711742 3507 True 860.20 2388 92.82780 761 3932 5 chr2B.!!$R2 3171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.165727 TTGCAATCGTTAGTGCTGCG 59.834 50.000 0.0 0.0 46.66 5.18 F
112 113 0.247301 GCAATCGTTAGTGCTGCGAC 60.247 55.000 0.0 0.0 43.27 5.19 F
140 141 0.458889 TGCGTAAGTACATGGCCGAC 60.459 55.000 0.0 0.0 41.68 4.79 F
142 143 0.529119 CGTAAGTACATGGCCGACCC 60.529 60.000 0.0 0.0 33.59 4.46 F
1982 2021 0.326264 CTCCTTCCTGTTCTGTGGGG 59.674 60.000 0.0 0.0 0.00 4.96 F
2305 2344 1.296715 CAAGGAACAGTCGAGGGGG 59.703 63.158 0.0 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1775 0.760189 ACACATGCTTGCCTTTGGGT 60.760 50.000 0.00 0.00 34.45 4.51 R
1752 1788 5.245531 ACTACCAATGGTAAGTGACACATG 58.754 41.667 13.73 0.37 37.76 3.21 R
1970 2009 6.588719 TCATTATTTTTCCCCACAGAACAG 57.411 37.500 0.00 0.00 0.00 3.16 R
2101 2140 7.376072 GGACATTATTAGCACGCTTTGATTTAC 59.624 37.037 0.00 0.00 0.00 2.01 R
3245 3645 0.955919 CTTCCGTCCCAGCACCTTTC 60.956 60.000 0.00 0.00 0.00 2.62 R
4098 4561 0.318762 AATCGAGCCGGCTAGATTCC 59.681 55.000 41.88 25.15 42.04 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.412112 GGAGGTCCGGATCGAACG 59.588 66.667 7.81 5.96 0.00 3.95
27 28 2.278661 GAGGTCCGGATCGAACGC 60.279 66.667 7.81 0.00 0.00 4.84
28 29 2.754658 AGGTCCGGATCGAACGCT 60.755 61.111 7.81 0.00 0.00 5.07
29 30 2.278661 GGTCCGGATCGAACGCTC 60.279 66.667 7.81 0.00 0.00 5.03
30 31 2.488355 GTCCGGATCGAACGCTCA 59.512 61.111 7.81 0.00 0.00 4.26
31 32 1.872679 GTCCGGATCGAACGCTCAC 60.873 63.158 7.81 0.00 0.00 3.51
33 34 2.099638 CGGATCGAACGCTCACGA 59.900 61.111 0.00 0.00 43.93 4.35
34 35 1.934956 CGGATCGAACGCTCACGAG 60.935 63.158 0.00 0.00 43.93 4.18
35 36 1.586564 GGATCGAACGCTCACGAGG 60.587 63.158 0.00 0.00 43.93 4.63
36 37 1.586564 GATCGAACGCTCACGAGGG 60.587 63.158 9.37 9.37 43.93 4.30
37 38 2.938539 GATCGAACGCTCACGAGGGG 62.939 65.000 14.72 0.00 44.60 4.79
38 39 4.796231 CGAACGCTCACGAGGGGG 62.796 72.222 14.72 0.00 44.60 5.40
59 60 1.523758 CTTGTGAGCACTGGTTACCC 58.476 55.000 0.00 0.00 0.00 3.69
60 61 1.072331 CTTGTGAGCACTGGTTACCCT 59.928 52.381 0.00 0.00 0.00 4.34
61 62 1.136828 TGTGAGCACTGGTTACCCTT 58.863 50.000 0.00 0.00 0.00 3.95
62 63 1.071699 TGTGAGCACTGGTTACCCTTC 59.928 52.381 0.00 0.00 0.00 3.46
63 64 0.690762 TGAGCACTGGTTACCCTTCC 59.309 55.000 0.00 0.00 0.00 3.46
64 65 0.984995 GAGCACTGGTTACCCTTCCT 59.015 55.000 0.00 0.00 0.00 3.36
65 66 0.693049 AGCACTGGTTACCCTTCCTG 59.307 55.000 0.00 0.00 0.00 3.86
66 67 0.322546 GCACTGGTTACCCTTCCTGG 60.323 60.000 0.00 0.00 0.00 4.45
67 68 0.322546 CACTGGTTACCCTTCCTGGC 60.323 60.000 0.00 0.00 0.00 4.85
68 69 1.078426 CTGGTTACCCTTCCTGGCG 60.078 63.158 0.00 0.00 0.00 5.69
69 70 2.437895 GGTTACCCTTCCTGGCGC 60.438 66.667 0.00 0.00 0.00 6.53
70 71 2.669240 GTTACCCTTCCTGGCGCT 59.331 61.111 7.64 0.00 0.00 5.92
71 72 1.002502 GTTACCCTTCCTGGCGCTT 60.003 57.895 7.64 0.00 0.00 4.68
72 73 0.251073 GTTACCCTTCCTGGCGCTTA 59.749 55.000 7.64 0.00 0.00 3.09
73 74 0.985760 TTACCCTTCCTGGCGCTTAA 59.014 50.000 7.64 0.00 0.00 1.85
74 75 0.539986 TACCCTTCCTGGCGCTTAAG 59.460 55.000 7.64 6.00 0.00 1.85
75 76 1.452108 CCCTTCCTGGCGCTTAAGG 60.452 63.158 7.64 14.52 38.58 2.69
76 77 2.115291 CCTTCCTGGCGCTTAAGGC 61.115 63.158 7.64 6.03 32.66 4.35
85 86 2.514824 GCTTAAGGCGCTGGGAGG 60.515 66.667 7.64 0.00 0.00 4.30
86 87 3.031417 GCTTAAGGCGCTGGGAGGA 62.031 63.158 7.64 0.00 0.00 3.71
87 88 1.144936 CTTAAGGCGCTGGGAGGAG 59.855 63.158 7.64 0.00 0.00 3.69
88 89 2.317149 CTTAAGGCGCTGGGAGGAGG 62.317 65.000 7.64 0.00 0.00 4.30
89 90 3.618855 TAAGGCGCTGGGAGGAGGT 62.619 63.158 7.64 0.00 0.00 3.85
92 93 3.394836 GCGCTGGGAGGAGGTCTT 61.395 66.667 0.00 0.00 0.00 3.01
93 94 2.581354 CGCTGGGAGGAGGTCTTG 59.419 66.667 0.00 0.00 0.00 3.02
94 95 2.270527 GCTGGGAGGAGGTCTTGC 59.729 66.667 0.00 0.00 0.00 4.01
95 96 2.596851 GCTGGGAGGAGGTCTTGCA 61.597 63.158 0.00 0.00 0.00 4.08
96 97 2.069776 CTGGGAGGAGGTCTTGCAA 58.930 57.895 0.00 0.00 0.00 4.08
97 98 0.622665 CTGGGAGGAGGTCTTGCAAT 59.377 55.000 0.00 0.00 0.00 3.56
98 99 0.620556 TGGGAGGAGGTCTTGCAATC 59.379 55.000 0.00 0.00 0.00 2.67
99 100 0.462759 GGGAGGAGGTCTTGCAATCG 60.463 60.000 0.00 0.00 0.00 3.34
100 101 0.250513 GGAGGAGGTCTTGCAATCGT 59.749 55.000 0.00 0.00 0.00 3.73
101 102 1.339151 GGAGGAGGTCTTGCAATCGTT 60.339 52.381 0.00 0.00 0.00 3.85
102 103 2.093658 GGAGGAGGTCTTGCAATCGTTA 60.094 50.000 0.00 0.00 0.00 3.18
103 104 3.190874 GAGGAGGTCTTGCAATCGTTAG 58.809 50.000 0.00 0.00 0.00 2.34
104 105 2.567615 AGGAGGTCTTGCAATCGTTAGT 59.432 45.455 0.00 0.00 0.00 2.24
105 106 2.673368 GGAGGTCTTGCAATCGTTAGTG 59.327 50.000 0.00 0.00 0.00 2.74
106 107 2.076863 AGGTCTTGCAATCGTTAGTGC 58.923 47.619 0.00 0.00 46.71 4.40
107 108 2.076863 GGTCTTGCAATCGTTAGTGCT 58.923 47.619 0.00 0.00 46.66 4.40
108 109 2.159653 GGTCTTGCAATCGTTAGTGCTG 60.160 50.000 0.00 0.00 46.66 4.41
109 110 1.464608 TCTTGCAATCGTTAGTGCTGC 59.535 47.619 0.00 0.00 46.66 5.25
110 111 0.165727 TTGCAATCGTTAGTGCTGCG 59.834 50.000 0.00 0.00 46.66 5.18
111 112 0.669012 TGCAATCGTTAGTGCTGCGA 60.669 50.000 0.00 0.00 46.66 5.10
112 113 0.247301 GCAATCGTTAGTGCTGCGAC 60.247 55.000 0.00 0.00 43.27 5.19
113 114 1.350193 CAATCGTTAGTGCTGCGACT 58.650 50.000 9.15 9.15 37.47 4.18
114 115 1.059692 CAATCGTTAGTGCTGCGACTG 59.940 52.381 12.80 0.00 37.47 3.51
115 116 1.078759 ATCGTTAGTGCTGCGACTGC 61.079 55.000 12.80 0.00 43.20 4.40
116 117 1.734477 CGTTAGTGCTGCGACTGCT 60.734 57.895 12.80 1.70 43.34 4.24
117 118 1.678269 CGTTAGTGCTGCGACTGCTC 61.678 60.000 12.80 6.51 43.34 4.26
118 119 0.667487 GTTAGTGCTGCGACTGCTCA 60.667 55.000 12.80 0.00 43.34 4.26
119 120 0.667487 TTAGTGCTGCGACTGCTCAC 60.667 55.000 12.80 5.52 43.34 3.51
120 121 2.802740 TAGTGCTGCGACTGCTCACG 62.803 60.000 12.80 0.00 44.32 4.35
121 122 4.284860 TGCTGCGACTGCTCACGT 62.285 61.111 0.00 0.00 43.34 4.49
122 123 3.771491 GCTGCGACTGCTCACGTG 61.771 66.667 9.94 9.94 43.34 4.49
123 124 3.771491 CTGCGACTGCTCACGTGC 61.771 66.667 11.67 0.00 43.34 5.34
126 127 2.127003 CGACTGCTCACGTGCGTA 60.127 61.111 11.67 2.80 35.36 4.42
127 128 1.728074 CGACTGCTCACGTGCGTAA 60.728 57.895 11.67 0.00 35.36 3.18
128 129 1.665544 CGACTGCTCACGTGCGTAAG 61.666 60.000 11.67 9.58 35.36 2.34
129 130 0.663568 GACTGCTCACGTGCGTAAGT 60.664 55.000 11.67 12.81 41.68 2.24
130 131 0.594602 ACTGCTCACGTGCGTAAGTA 59.405 50.000 11.67 1.34 41.68 2.24
138 139 4.506005 TGCGTAAGTACATGGCCG 57.494 55.556 0.00 0.00 41.68 6.13
139 140 1.891616 TGCGTAAGTACATGGCCGA 59.108 52.632 0.00 0.00 41.68 5.54
140 141 0.458889 TGCGTAAGTACATGGCCGAC 60.459 55.000 0.00 0.00 41.68 4.79
141 142 1.149964 GCGTAAGTACATGGCCGACC 61.150 60.000 0.00 0.00 41.68 4.79
142 143 0.529119 CGTAAGTACATGGCCGACCC 60.529 60.000 0.00 0.00 33.59 4.46
150 151 3.642078 TGGCCGACCCATTAGGAG 58.358 61.111 0.00 0.00 39.18 3.69
151 152 1.306654 TGGCCGACCCATTAGGAGT 60.307 57.895 0.00 0.00 39.18 3.85
152 153 1.335132 TGGCCGACCCATTAGGAGTC 61.335 60.000 0.00 0.00 39.18 3.36
153 154 1.446366 GCCGACCCATTAGGAGTCC 59.554 63.158 0.00 0.00 39.89 3.85
154 155 1.049289 GCCGACCCATTAGGAGTCCT 61.049 60.000 17.78 17.78 39.89 3.85
155 156 1.497161 CCGACCCATTAGGAGTCCTT 58.503 55.000 19.06 0.00 39.89 3.36
156 157 1.413077 CCGACCCATTAGGAGTCCTTC 59.587 57.143 19.06 6.62 39.89 3.46
164 165 3.379445 GGAGTCCTTCCCACGCGA 61.379 66.667 15.93 0.00 40.37 5.87
165 166 2.654877 GAGTCCTTCCCACGCGAA 59.345 61.111 15.93 0.00 0.00 4.70
166 167 1.446272 GAGTCCTTCCCACGCGAAG 60.446 63.158 15.93 5.57 39.22 3.79
167 168 2.156051 GAGTCCTTCCCACGCGAAGT 62.156 60.000 15.93 0.00 38.05 3.01
178 179 2.949714 ACGCGAAGTGATTGAACAAG 57.050 45.000 15.93 0.00 43.07 3.16
179 180 2.479837 ACGCGAAGTGATTGAACAAGA 58.520 42.857 15.93 0.00 43.07 3.02
180 181 2.869801 ACGCGAAGTGATTGAACAAGAA 59.130 40.909 15.93 0.00 43.07 2.52
181 182 3.311322 ACGCGAAGTGATTGAACAAGAAA 59.689 39.130 15.93 0.00 43.07 2.52
182 183 4.024048 ACGCGAAGTGATTGAACAAGAAAT 60.024 37.500 15.93 0.00 43.07 2.17
183 184 5.178623 ACGCGAAGTGATTGAACAAGAAATA 59.821 36.000 15.93 0.00 43.07 1.40
184 185 5.729883 CGCGAAGTGATTGAACAAGAAATAG 59.270 40.000 0.00 0.00 43.07 1.73
185 186 5.509622 GCGAAGTGATTGAACAAGAAATAGC 59.490 40.000 0.00 0.00 0.00 2.97
186 187 6.602179 CGAAGTGATTGAACAAGAAATAGCA 58.398 36.000 0.00 0.00 0.00 3.49
187 188 6.740002 CGAAGTGATTGAACAAGAAATAGCAG 59.260 38.462 0.00 0.00 0.00 4.24
188 189 7.516198 AAGTGATTGAACAAGAAATAGCAGT 57.484 32.000 0.00 0.00 0.00 4.40
189 190 7.516198 AGTGATTGAACAAGAAATAGCAGTT 57.484 32.000 0.00 0.00 0.00 3.16
190 191 7.945134 AGTGATTGAACAAGAAATAGCAGTTT 58.055 30.769 0.00 0.00 0.00 2.66
191 192 8.416329 AGTGATTGAACAAGAAATAGCAGTTTT 58.584 29.630 0.00 0.00 0.00 2.43
192 193 8.482429 GTGATTGAACAAGAAATAGCAGTTTTG 58.518 33.333 0.00 0.00 0.00 2.44
193 194 7.652909 TGATTGAACAAGAAATAGCAGTTTTGG 59.347 33.333 0.00 0.00 0.00 3.28
194 195 6.707440 TGAACAAGAAATAGCAGTTTTGGA 57.293 33.333 0.00 0.00 0.00 3.53
195 196 7.106439 TGAACAAGAAATAGCAGTTTTGGAA 57.894 32.000 0.00 0.00 0.00 3.53
196 197 7.551585 TGAACAAGAAATAGCAGTTTTGGAAA 58.448 30.769 0.00 0.00 0.00 3.13
197 198 7.491048 TGAACAAGAAATAGCAGTTTTGGAAAC 59.509 33.333 0.00 0.00 0.00 2.78
198 199 6.280643 ACAAGAAATAGCAGTTTTGGAAACC 58.719 36.000 0.27 0.00 0.00 3.27
199 200 6.098266 ACAAGAAATAGCAGTTTTGGAAACCT 59.902 34.615 0.27 0.00 0.00 3.50
200 201 6.731292 AGAAATAGCAGTTTTGGAAACCTT 57.269 33.333 0.27 0.00 0.00 3.50
201 202 6.749139 AGAAATAGCAGTTTTGGAAACCTTC 58.251 36.000 0.27 0.00 0.00 3.46
202 203 6.551227 AGAAATAGCAGTTTTGGAAACCTTCT 59.449 34.615 0.27 0.00 0.00 2.85
203 204 7.724061 AGAAATAGCAGTTTTGGAAACCTTCTA 59.276 33.333 0.27 1.35 0.00 2.10
204 205 7.454260 AATAGCAGTTTTGGAAACCTTCTAG 57.546 36.000 0.27 0.00 0.00 2.43
205 206 5.048846 AGCAGTTTTGGAAACCTTCTAGA 57.951 39.130 0.00 0.00 0.00 2.43
206 207 5.445964 AGCAGTTTTGGAAACCTTCTAGAA 58.554 37.500 4.81 4.81 0.00 2.10
207 208 5.532779 AGCAGTTTTGGAAACCTTCTAGAAG 59.467 40.000 23.31 23.31 38.14 2.85
222 223 7.809546 CTTCTAGAAGGTTCAAAGTTTTCCT 57.190 36.000 22.67 0.00 34.87 3.36
223 224 8.226819 CTTCTAGAAGGTTCAAAGTTTTCCTT 57.773 34.615 22.67 13.16 40.59 3.36
224 225 8.589701 TTCTAGAAGGTTCAAAGTTTTCCTTT 57.410 30.769 0.00 9.11 44.30 3.11
225 226 8.589701 TCTAGAAGGTTCAAAGTTTTCCTTTT 57.410 30.769 14.00 11.92 41.51 2.27
226 227 8.683615 TCTAGAAGGTTCAAAGTTTTCCTTTTC 58.316 33.333 14.00 6.47 41.51 2.29
227 228 6.330278 AGAAGGTTCAAAGTTTTCCTTTTCG 58.670 36.000 14.00 0.00 41.51 3.46
228 229 5.907866 AGGTTCAAAGTTTTCCTTTTCGA 57.092 34.783 0.00 0.00 41.51 3.71
229 230 6.275494 AGGTTCAAAGTTTTCCTTTTCGAA 57.725 33.333 0.00 0.00 41.51 3.71
230 231 6.693466 AGGTTCAAAGTTTTCCTTTTCGAAA 58.307 32.000 6.47 6.47 41.51 3.46
231 232 7.327975 AGGTTCAAAGTTTTCCTTTTCGAAAT 58.672 30.769 12.12 0.00 41.51 2.17
232 233 7.822334 AGGTTCAAAGTTTTCCTTTTCGAAATT 59.178 29.630 12.12 0.00 41.51 1.82
233 234 8.447833 GGTTCAAAGTTTTCCTTTTCGAAATTT 58.552 29.630 12.12 3.82 41.51 1.82
234 235 9.820229 GTTCAAAGTTTTCCTTTTCGAAATTTT 57.180 25.926 12.12 0.00 41.51 1.82
236 237 9.430623 TCAAAGTTTTCCTTTTCGAAATTTTCT 57.569 25.926 12.12 2.13 41.51 2.52
237 238 9.689075 CAAAGTTTTCCTTTTCGAAATTTTCTC 57.311 29.630 12.12 0.99 41.51 2.87
238 239 9.653287 AAAGTTTTCCTTTTCGAAATTTTCTCT 57.347 25.926 12.12 3.21 40.55 3.10
239 240 9.653287 AAGTTTTCCTTTTCGAAATTTTCTCTT 57.347 25.926 12.12 8.65 32.00 2.85
240 241 9.302345 AGTTTTCCTTTTCGAAATTTTCTCTTC 57.698 29.630 12.12 0.00 32.00 2.87
241 242 9.302345 GTTTTCCTTTTCGAAATTTTCTCTTCT 57.698 29.630 12.12 0.00 32.00 2.85
242 243 9.869757 TTTTCCTTTTCGAAATTTTCTCTTCTT 57.130 25.926 12.12 0.00 32.00 2.52
243 244 9.869757 TTTCCTTTTCGAAATTTTCTCTTCTTT 57.130 25.926 12.12 0.00 0.00 2.52
244 245 9.869757 TTCCTTTTCGAAATTTTCTCTTCTTTT 57.130 25.926 12.12 0.00 0.00 2.27
245 246 9.869757 TCCTTTTCGAAATTTTCTCTTCTTTTT 57.130 25.926 12.12 0.00 0.00 1.94
449 451 9.925268 CCAAAAATCTTCAGAAATTCAAAAGTG 57.075 29.630 0.00 0.00 0.00 3.16
458 460 6.526325 TCAGAAATTCAAAAGTGTTCACGTTG 59.474 34.615 5.07 9.50 0.00 4.10
464 466 6.683090 TCAAAAGTGTTCACGTTGAAAAAG 57.317 33.333 16.58 2.64 38.22 2.27
479 481 9.157104 ACGTTGAAAAAGTGGTCAAAATATTTT 57.843 25.926 7.64 7.64 37.09 1.82
489 492 9.819267 AGTGGTCAAAATATTTTAAAAACCGAA 57.181 25.926 12.98 2.74 0.00 4.30
552 555 8.558973 TGTTCCAAAAATTGTTCTGTGAAAAT 57.441 26.923 0.00 0.00 0.00 1.82
554 557 9.489393 GTTCCAAAAATTGTTCTGTGAAAATTC 57.511 29.630 0.00 0.00 0.00 2.17
579 582 9.834628 TCTTCGCGAATTTAAAAATTATTCAGT 57.165 25.926 23.67 0.00 38.64 3.41
580 583 9.871359 CTTCGCGAATTTAAAAATTATTCAGTG 57.129 29.630 23.67 0.00 38.64 3.66
581 584 9.613957 TTCGCGAATTTAAAAATTATTCAGTGA 57.386 25.926 19.38 0.00 38.64 3.41
582 585 9.613957 TCGCGAATTTAAAAATTATTCAGTGAA 57.386 25.926 6.20 8.27 38.64 3.18
706 709 3.090952 TGGCAAAATTTCAGTGAACGG 57.909 42.857 4.68 0.00 0.00 4.44
713 716 6.648502 CAAAATTTCAGTGAACGGGATTTTG 58.351 36.000 24.85 24.85 36.96 2.44
714 717 5.782893 AATTTCAGTGAACGGGATTTTGA 57.217 34.783 4.68 0.00 0.00 2.69
718 721 3.004315 TCAGTGAACGGGATTTTGAAAGC 59.996 43.478 0.00 0.00 0.00 3.51
721 724 2.619177 TGAACGGGATTTTGAAAGCGAA 59.381 40.909 0.00 0.00 0.00 4.70
734 737 5.493133 TGAAAGCGAACAATGTTTACACT 57.507 34.783 0.00 0.00 0.00 3.55
739 742 3.548014 GCGAACAATGTTTACACTGCACT 60.548 43.478 0.00 0.00 0.00 4.40
742 745 5.432885 AACAATGTTTACACTGCACTACC 57.567 39.130 0.00 0.00 0.00 3.18
752 755 1.065854 ACTGCACTACCTGATTCAGCC 60.066 52.381 8.23 0.00 0.00 4.85
759 762 4.528674 CTGATTCAGCCCGTCAGG 57.471 61.111 0.00 0.00 36.57 3.86
871 874 2.650116 CCAGGGAGAGACCACACGG 61.650 68.421 0.00 0.00 41.20 4.94
876 879 1.542492 GGAGAGACCACACGGAGTAA 58.458 55.000 0.00 0.00 37.32 2.24
983 989 2.940147 CTCGCATCTTTCGAGGGATAG 58.060 52.381 4.66 1.78 46.82 2.08
984 990 2.294791 CTCGCATCTTTCGAGGGATAGT 59.705 50.000 4.66 0.00 46.82 2.12
987 993 3.502595 CGCATCTTTCGAGGGATAGTAGA 59.497 47.826 2.64 0.00 0.00 2.59
988 994 4.156922 CGCATCTTTCGAGGGATAGTAGAT 59.843 45.833 2.64 0.00 0.00 1.98
999 1005 2.448453 GATAGTAGATAGGCGGCAGGT 58.552 52.381 13.08 0.00 0.00 4.00
1101 1107 4.564110 GGCGGGGTCCCTGTATGC 62.564 72.222 18.58 9.42 31.34 3.14
1105 1111 1.456287 GGGGTCCCTGTATGCCATC 59.544 63.158 8.15 0.00 0.00 3.51
1115 1121 3.198068 CTGTATGCCATCGCTAACTTGT 58.802 45.455 0.00 0.00 35.36 3.16
1120 1126 2.621055 TGCCATCGCTAACTTGTTGTTT 59.379 40.909 0.00 0.00 39.89 2.83
1171 1195 2.144730 CAGAGATGAAGCTATGCTGCC 58.855 52.381 0.00 0.00 39.62 4.85
1199 1223 4.086457 TCTTGGGAAGTTGGAAATAAGCC 58.914 43.478 0.00 0.00 0.00 4.35
1203 1227 3.024547 GGAAGTTGGAAATAAGCCCTCC 58.975 50.000 0.00 0.00 0.00 4.30
1216 1240 2.412591 AGCCCTCCTGTTATGCTACAT 58.587 47.619 0.00 0.00 0.00 2.29
1218 1242 2.498167 CCCTCCTGTTATGCTACATGC 58.502 52.381 0.00 0.00 43.25 4.06
1252 1276 9.162764 TGTTCTAGTACCAATTTTATCTTCTGC 57.837 33.333 0.00 0.00 0.00 4.26
1319 1349 9.840427 TTGCTAGCTCATGTTTAAGTAATTTTC 57.160 29.630 17.23 0.00 0.00 2.29
1374 1404 1.003580 TGTGGGGACTGAAGCTGAATC 59.996 52.381 0.00 0.00 0.00 2.52
1429 1459 1.334869 CTTGTTGCTCAGGCGAGTTTT 59.665 47.619 7.88 0.00 41.71 2.43
1472 1502 6.434018 AAGAATGTTAAGAGCTGAAGCATC 57.566 37.500 4.90 0.00 45.16 3.91
1508 1538 7.393796 ACGTCCATATAAGGGAATAGAGTACTG 59.606 40.741 0.00 0.00 35.88 2.74
1532 1562 8.506168 TGTGAATTTATCATCTTTGGACCTAC 57.494 34.615 0.00 0.00 40.97 3.18
1533 1563 8.106462 TGTGAATTTATCATCTTTGGACCTACA 58.894 33.333 0.00 0.00 40.97 2.74
1534 1564 8.616076 GTGAATTTATCATCTTTGGACCTACAG 58.384 37.037 0.00 0.00 40.97 2.74
1535 1565 8.548025 TGAATTTATCATCTTTGGACCTACAGA 58.452 33.333 0.00 0.00 31.50 3.41
1536 1566 8.738645 AATTTATCATCTTTGGACCTACAGAC 57.261 34.615 0.00 0.00 0.00 3.51
1537 1567 7.496346 TTTATCATCTTTGGACCTACAGACT 57.504 36.000 0.00 0.00 0.00 3.24
1538 1568 7.496346 TTATCATCTTTGGACCTACAGACTT 57.504 36.000 0.00 0.00 0.00 3.01
1539 1569 8.603898 TTATCATCTTTGGACCTACAGACTTA 57.396 34.615 0.00 0.00 0.00 2.24
1544 1578 3.955650 TGGACCTACAGACTTAACAGC 57.044 47.619 0.00 0.00 0.00 4.40
1545 1579 3.236047 TGGACCTACAGACTTAACAGCA 58.764 45.455 0.00 0.00 0.00 4.41
1560 1594 6.206829 ACTTAACAGCACCCTAAATTCTTGTC 59.793 38.462 0.00 0.00 0.00 3.18
1592 1627 4.274459 GCTTGTTTCTATGATGGTAGCCAG 59.726 45.833 0.00 0.00 36.75 4.85
1593 1628 3.808728 TGTTTCTATGATGGTAGCCAGC 58.191 45.455 0.00 0.00 40.77 4.85
1598 1633 3.315544 TGATGGTAGCCAGCACCTA 57.684 52.632 1.62 1.58 45.45 3.08
1603 1638 3.260269 TGGTAGCCAGCACCTATATCT 57.740 47.619 10.99 0.00 36.96 1.98
1739 1775 0.607620 GCCAAAATGCAGCCCTAACA 59.392 50.000 0.00 0.00 0.00 2.41
1752 1788 0.603065 CCTAACACCCAAAGGCAAGC 59.397 55.000 0.00 0.00 36.11 4.01
1822 1858 8.156820 TCTGATCTTCAGTTTGATTTGAGGTTA 58.843 33.333 4.56 0.00 44.58 2.85
1970 2009 2.751806 CTCAAATGAGCCAACTCCTTCC 59.248 50.000 0.00 0.00 42.74 3.46
1978 2017 1.202818 GCCAACTCCTTCCTGTTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
1982 2021 0.326264 CTCCTTCCTGTTCTGTGGGG 59.674 60.000 0.00 0.00 0.00 4.96
1986 2025 2.424234 CCTTCCTGTTCTGTGGGGAAAA 60.424 50.000 0.00 0.00 37.39 2.29
2017 2056 6.196079 AGAAGAAAACAAGAGTTCCAACAC 57.804 37.500 0.00 0.00 36.84 3.32
2101 2140 4.746611 GGCATCCAACACAAAGAAGAAAAG 59.253 41.667 0.00 0.00 0.00 2.27
2102 2141 5.351458 GCATCCAACACAAAGAAGAAAAGT 58.649 37.500 0.00 0.00 0.00 2.66
2209 2248 5.426689 AATCTCTGCAGAACTCATTACCA 57.573 39.130 18.85 0.00 30.24 3.25
2214 2253 6.155221 TCTCTGCAGAACTCATTACCATAAGT 59.845 38.462 18.85 0.00 0.00 2.24
2243 2282 4.058124 TCCGAGTGTTTTTGTCTCATGAG 58.942 43.478 17.07 17.07 0.00 2.90
2305 2344 1.296715 CAAGGAACAGTCGAGGGGG 59.703 63.158 0.00 0.00 0.00 5.40
2354 2393 5.009854 TGAAAAACTTTTGGCAGAAGAGG 57.990 39.130 22.97 0.00 0.00 3.69
2864 2903 5.488262 TGATGAAGTTCAAGGATCTGTCA 57.512 39.130 10.14 3.60 0.00 3.58
3048 3166 7.811282 TCCTGGAAATACATCAGCCTAAAATA 58.189 34.615 0.00 0.00 0.00 1.40
3058 3176 7.445945 ACATCAGCCTAAAATATACACTCTCC 58.554 38.462 0.00 0.00 0.00 3.71
3067 3220 7.448748 AAAATATACACTCTCCACACCAAAC 57.551 36.000 0.00 0.00 0.00 2.93
3125 3278 7.038445 CCAGATGAATGGAATGGATAGTAGACT 60.038 40.741 0.00 0.00 43.57 3.24
3180 3333 5.187687 CCTATTAGCAGTTTTCCCCGTTTA 58.812 41.667 0.00 0.00 0.00 2.01
3183 3336 7.499895 CCTATTAGCAGTTTTCCCCGTTTATTA 59.500 37.037 0.00 0.00 0.00 0.98
3185 3338 7.706100 TTAGCAGTTTTCCCCGTTTATTATT 57.294 32.000 0.00 0.00 0.00 1.40
3186 3339 5.961272 AGCAGTTTTCCCCGTTTATTATTG 58.039 37.500 0.00 0.00 0.00 1.90
3187 3340 4.565166 GCAGTTTTCCCCGTTTATTATTGC 59.435 41.667 0.00 0.00 0.00 3.56
3188 3341 4.796312 CAGTTTTCCCCGTTTATTATTGCG 59.204 41.667 0.00 0.00 0.00 4.85
3189 3342 4.106909 GTTTTCCCCGTTTATTATTGCGG 58.893 43.478 0.00 0.00 43.40 5.69
3190 3343 3.278668 TTCCCCGTTTATTATTGCGGA 57.721 42.857 3.22 0.00 46.33 5.54
3191 3344 3.278668 TCCCCGTTTATTATTGCGGAA 57.721 42.857 3.22 0.00 46.33 4.30
3192 3345 3.618351 TCCCCGTTTATTATTGCGGAAA 58.382 40.909 0.00 0.00 46.33 3.13
3193 3346 4.208746 TCCCCGTTTATTATTGCGGAAAT 58.791 39.130 0.00 0.00 46.33 2.17
3194 3347 5.374921 TCCCCGTTTATTATTGCGGAAATA 58.625 37.500 0.00 0.00 46.33 1.40
3195 3348 5.470777 TCCCCGTTTATTATTGCGGAAATAG 59.529 40.000 0.00 0.00 46.33 1.73
3196 3349 5.335348 CCCCGTTTATTATTGCGGAAATAGG 60.335 44.000 0.00 0.00 46.33 2.57
3197 3350 5.335348 CCCGTTTATTATTGCGGAAATAGGG 60.335 44.000 0.00 0.00 46.33 3.53
3198 3351 5.239963 CCGTTTATTATTGCGGAAATAGGGT 59.760 40.000 0.00 0.00 46.33 4.34
3199 3352 6.238814 CCGTTTATTATTGCGGAAATAGGGTT 60.239 38.462 0.00 0.00 46.33 4.11
3200 3353 7.197703 CGTTTATTATTGCGGAAATAGGGTTT 58.802 34.615 0.00 0.00 32.30 3.27
3201 3354 7.377662 CGTTTATTATTGCGGAAATAGGGTTTC 59.622 37.037 0.00 0.00 32.30 2.78
3202 3355 5.784578 ATTATTGCGGAAATAGGGTTTCC 57.215 39.130 9.04 9.04 43.38 3.13
3203 3356 1.842052 TTGCGGAAATAGGGTTTCCC 58.158 50.000 12.52 0.00 43.80 3.97
3233 3633 6.892658 TTGTATTACAAAGCAACCATCACT 57.107 33.333 6.79 0.00 34.76 3.41
3245 3645 1.946768 ACCATCACTGAACAACCAACG 59.053 47.619 0.00 0.00 0.00 4.10
3259 3659 1.949257 CAACGAAAGGTGCTGGGAC 59.051 57.895 0.00 0.00 44.78 4.46
3289 3689 0.103937 CAGGCACGCCCAAAAGAAAA 59.896 50.000 3.95 0.00 36.58 2.29
3313 3713 4.843220 AGGCTGAGAAATGAAAGTTGTG 57.157 40.909 0.00 0.00 0.00 3.33
3328 3730 3.888934 AGTTGTGCGCTGTCTTTATTTG 58.111 40.909 9.73 0.00 0.00 2.32
3393 3795 7.156673 TCATATTCCTAACAATAACCTACCGC 58.843 38.462 0.00 0.00 0.00 5.68
3735 4197 4.567195 TGGCACATCCAGGAGACT 57.433 55.556 0.00 0.00 40.72 3.24
3783 4245 2.989422 ACATTAAGCGAAACACCAGC 57.011 45.000 0.00 0.00 0.00 4.85
3843 4305 2.172293 GTCCTCCTCTTGCTTCCATCAT 59.828 50.000 0.00 0.00 0.00 2.45
3874 4336 2.305927 CAGGCCTTTGTCCTCCTCTTTA 59.694 50.000 0.00 0.00 0.00 1.85
3973 4435 8.206867 TGTATAATTAGAGCACAATGAGCTTCT 58.793 33.333 6.63 7.98 43.58 2.85
4073 4535 5.992217 GGTATAAACAGTGCATCCCTCTAAG 59.008 44.000 0.00 0.00 0.00 2.18
4074 4536 5.700402 ATAAACAGTGCATCCCTCTAAGT 57.300 39.130 0.00 0.00 0.00 2.24
4091 4554 6.831353 CCTCTAAGTCTCTCCAAGAGTTGATA 59.169 42.308 4.03 0.00 45.40 2.15
4098 4561 4.686972 TCTCCAAGAGTTGATATGCTTCG 58.313 43.478 0.00 0.00 0.00 3.79
4103 4566 5.049818 CCAAGAGTTGATATGCTTCGGAATC 60.050 44.000 0.00 0.00 0.00 2.52
4104 4567 5.543507 AGAGTTGATATGCTTCGGAATCT 57.456 39.130 0.00 0.00 0.00 2.40
4105 4568 6.656632 AGAGTTGATATGCTTCGGAATCTA 57.343 37.500 0.00 0.00 0.00 1.98
4106 4569 6.686630 AGAGTTGATATGCTTCGGAATCTAG 58.313 40.000 0.00 0.00 0.00 2.43
4107 4570 5.233988 AGTTGATATGCTTCGGAATCTAGC 58.766 41.667 0.00 0.00 35.50 3.42
4108 4571 4.193826 TGATATGCTTCGGAATCTAGCC 57.806 45.455 0.00 0.00 34.03 3.93
4131 4594 3.880846 GATTGCGCCGGGCTCAAG 61.881 66.667 26.31 8.79 44.05 3.02
4143 4606 2.695359 GGGCTCAAGACGTCAACATAA 58.305 47.619 19.50 0.00 0.00 1.90
4160 4623 4.043596 ACATAAAGGAGAGGAGCAGGATT 58.956 43.478 0.00 0.00 0.00 3.01
4177 4640 2.124507 ATTAGCAGGGCGTGTGGTGT 62.125 55.000 9.16 0.00 0.00 4.16
4178 4641 2.332312 TTAGCAGGGCGTGTGGTGTT 62.332 55.000 9.16 0.00 0.00 3.32
4179 4642 1.473497 TAGCAGGGCGTGTGGTGTTA 61.473 55.000 9.16 0.00 0.00 2.41
4208 4671 2.835156 TCGTCTTGGGATTGTCCATGTA 59.165 45.455 0.00 0.00 38.64 2.29
4227 4690 5.300969 TGTAAGAATGCTTTGTGATCAGC 57.699 39.130 0.00 0.00 35.56 4.26
4279 4743 1.521141 GGTCGGGAAGGAAGGCTAC 59.479 63.158 0.00 0.00 0.00 3.58
4284 4748 1.574263 GGGAAGGAAGGCTACAGACT 58.426 55.000 0.00 0.00 32.33 3.24
4286 4750 2.306219 GGGAAGGAAGGCTACAGACTTT 59.694 50.000 0.00 0.00 44.93 2.66
4287 4751 3.339141 GGAAGGAAGGCTACAGACTTTG 58.661 50.000 0.00 0.00 44.93 2.77
4288 4752 3.244596 GGAAGGAAGGCTACAGACTTTGT 60.245 47.826 0.00 0.00 44.93 2.83
4289 4753 4.390264 GAAGGAAGGCTACAGACTTTGTT 58.610 43.478 0.00 0.00 44.93 2.83
4350 4816 1.011333 ACGCACGGGCATGTTTATAC 58.989 50.000 11.77 0.00 41.24 1.47
4377 4843 8.197988 AGTATAAAAACTAGAACATGAAGGCG 57.802 34.615 0.00 0.00 0.00 5.52
4378 4844 3.831715 AAAACTAGAACATGAAGGCGC 57.168 42.857 0.00 0.00 0.00 6.53
4379 4845 1.359848 AACTAGAACATGAAGGCGCG 58.640 50.000 0.00 0.00 0.00 6.86
4381 4847 2.082437 CTAGAACATGAAGGCGCGCG 62.082 60.000 28.44 28.44 0.00 6.86
4382 4848 2.829043 TAGAACATGAAGGCGCGCGT 62.829 55.000 32.35 24.51 0.00 6.01
4383 4849 3.308878 GAACATGAAGGCGCGCGTT 62.309 57.895 35.91 35.91 0.00 4.84
4384 4850 3.593551 AACATGAAGGCGCGCGTTG 62.594 57.895 39.57 28.75 0.00 4.10
4399 4865 4.849310 TTGCCACGCCCGCCTATC 62.849 66.667 0.00 0.00 0.00 2.08
4401 4867 4.547367 GCCACGCCCGCCTATCTT 62.547 66.667 0.00 0.00 0.00 2.40
4402 4868 2.588877 CCACGCCCGCCTATCTTG 60.589 66.667 0.00 0.00 0.00 3.02
4405 4871 1.144057 ACGCCCGCCTATCTTGAAG 59.856 57.895 0.00 0.00 0.00 3.02
4406 4872 1.595382 CGCCCGCCTATCTTGAAGG 60.595 63.158 0.00 0.00 37.17 3.46
4407 4873 1.527370 GCCCGCCTATCTTGAAGGT 59.473 57.895 0.00 0.00 36.43 3.50
4408 4874 0.107165 GCCCGCCTATCTTGAAGGTT 60.107 55.000 0.00 0.00 36.43 3.50
4409 4875 1.140252 GCCCGCCTATCTTGAAGGTTA 59.860 52.381 0.00 0.00 36.43 2.85
4410 4876 2.807108 GCCCGCCTATCTTGAAGGTTAG 60.807 54.545 0.00 0.00 36.43 2.34
4414 4880 4.752101 CCGCCTATCTTGAAGGTTAGATTG 59.248 45.833 0.00 0.00 36.43 2.67
4415 4881 5.360591 CGCCTATCTTGAAGGTTAGATTGT 58.639 41.667 0.00 0.00 36.43 2.71
4416 4882 6.462487 CCGCCTATCTTGAAGGTTAGATTGTA 60.462 42.308 0.00 0.00 36.43 2.41
4417 4883 6.642950 CGCCTATCTTGAAGGTTAGATTGTAG 59.357 42.308 0.00 0.00 36.43 2.74
4419 4885 7.654116 GCCTATCTTGAAGGTTAGATTGTAGTC 59.346 40.741 0.00 0.00 36.43 2.59
4420 4886 8.696374 CCTATCTTGAAGGTTAGATTGTAGTCA 58.304 37.037 0.00 0.00 33.38 3.41
4422 4888 8.954950 ATCTTGAAGGTTAGATTGTAGTCATG 57.045 34.615 0.00 0.00 0.00 3.07
4423 4889 8.134202 TCTTGAAGGTTAGATTGTAGTCATGA 57.866 34.615 0.00 0.00 0.00 3.07
4424 4890 8.253810 TCTTGAAGGTTAGATTGTAGTCATGAG 58.746 37.037 0.00 0.00 0.00 2.90
4425 4891 6.878317 TGAAGGTTAGATTGTAGTCATGAGG 58.122 40.000 0.00 0.00 0.00 3.86
4426 4892 6.667848 TGAAGGTTAGATTGTAGTCATGAGGA 59.332 38.462 0.00 0.00 0.00 3.71
4427 4893 7.180229 TGAAGGTTAGATTGTAGTCATGAGGAA 59.820 37.037 0.00 0.00 0.00 3.36
4428 4894 7.496346 AGGTTAGATTGTAGTCATGAGGAAA 57.504 36.000 0.00 0.00 0.00 3.13
4430 4896 8.383175 AGGTTAGATTGTAGTCATGAGGAAAAA 58.617 33.333 0.00 0.00 0.00 1.94
4431 4897 9.178758 GGTTAGATTGTAGTCATGAGGAAAAAT 57.821 33.333 0.00 0.00 0.00 1.82
4436 4902 9.956720 GATTGTAGTCATGAGGAAAAATATTGG 57.043 33.333 0.00 0.00 0.00 3.16
4437 4903 8.877864 TTGTAGTCATGAGGAAAAATATTGGT 57.122 30.769 0.00 0.00 0.00 3.67
4438 4904 9.967451 TTGTAGTCATGAGGAAAAATATTGGTA 57.033 29.630 0.00 0.00 0.00 3.25
4439 4905 9.613428 TGTAGTCATGAGGAAAAATATTGGTAG 57.387 33.333 0.00 0.00 0.00 3.18
4440 4906 9.614792 GTAGTCATGAGGAAAAATATTGGTAGT 57.385 33.333 0.00 0.00 0.00 2.73
4441 4907 8.511604 AGTCATGAGGAAAAATATTGGTAGTG 57.488 34.615 0.00 0.00 0.00 2.74
4442 4908 8.328758 AGTCATGAGGAAAAATATTGGTAGTGA 58.671 33.333 0.00 0.00 0.00 3.41
4443 4909 8.956426 GTCATGAGGAAAAATATTGGTAGTGAA 58.044 33.333 0.00 0.00 0.00 3.18
4444 4910 9.527157 TCATGAGGAAAAATATTGGTAGTGAAA 57.473 29.630 0.00 0.00 0.00 2.69
4446 4912 9.753674 ATGAGGAAAAATATTGGTAGTGAAAGA 57.246 29.630 0.00 0.00 0.00 2.52
4459 5156 8.792830 TGGTAGTGAAAGAGAATGAATTTAGG 57.207 34.615 0.00 0.00 0.00 2.69
4460 5157 7.829211 TGGTAGTGAAAGAGAATGAATTTAGGG 59.171 37.037 0.00 0.00 0.00 3.53
4461 5158 7.829706 GGTAGTGAAAGAGAATGAATTTAGGGT 59.170 37.037 0.00 0.00 0.00 4.34
4462 5159 9.886132 GTAGTGAAAGAGAATGAATTTAGGGTA 57.114 33.333 0.00 0.00 0.00 3.69
4476 5173 8.158132 TGAATTTAGGGTATAGAACACAACACA 58.842 33.333 0.00 0.00 31.97 3.72
4477 5174 7.916914 ATTTAGGGTATAGAACACAACACAC 57.083 36.000 0.00 0.00 31.97 3.82
4478 5175 4.967084 AGGGTATAGAACACAACACACA 57.033 40.909 0.00 0.00 31.97 3.72
4479 5176 5.499004 AGGGTATAGAACACAACACACAT 57.501 39.130 0.00 0.00 31.97 3.21
4480 5177 5.876357 AGGGTATAGAACACAACACACATT 58.124 37.500 0.00 0.00 31.97 2.71
4481 5178 5.705441 AGGGTATAGAACACAACACACATTG 59.295 40.000 0.00 0.00 31.97 2.82
4482 5179 5.390613 GGTATAGAACACAACACACATTGC 58.609 41.667 0.00 0.00 32.47 3.56
4483 5180 2.869233 AGAACACAACACACATTGCC 57.131 45.000 0.00 0.00 32.47 4.52
4484 5181 1.065401 AGAACACAACACACATTGCCG 59.935 47.619 0.00 0.00 32.47 5.69
4487 5184 1.065600 ACAACACACATTGCCGTGC 59.934 52.632 6.70 0.00 40.73 5.34
4488 5185 1.065436 CAACACACATTGCCGTGCA 59.935 52.632 6.70 0.00 40.73 4.57
4489 5186 0.318869 CAACACACATTGCCGTGCAT 60.319 50.000 6.70 0.00 40.73 3.96
4490 5187 0.318869 AACACACATTGCCGTGCATG 60.319 50.000 0.00 0.00 40.73 4.06
4491 5188 2.089936 CACACATTGCCGTGCATGC 61.090 57.895 11.82 11.82 40.73 4.06
4492 5189 2.258897 CACATTGCCGTGCATGCA 59.741 55.556 18.46 18.46 38.76 3.96
4493 5190 1.803922 CACATTGCCGTGCATGCAG 60.804 57.895 23.41 11.99 40.35 4.41
4494 5191 2.883730 CATTGCCGTGCATGCAGC 60.884 61.111 23.41 22.29 40.35 5.25
4495 5192 4.137872 ATTGCCGTGCATGCAGCC 62.138 61.111 23.41 12.75 44.83 4.85
4501 5198 1.154093 CGTGCATGCAGCCTGAAAG 60.154 57.895 23.41 1.43 44.83 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.412112 CGTTCGATCCGGACCTCC 59.588 66.667 6.12 0.00 30.62 4.30
10 11 2.278661 GCGTTCGATCCGGACCTC 60.279 66.667 6.12 0.00 30.62 3.85
11 12 2.754658 AGCGTTCGATCCGGACCT 60.755 61.111 6.12 0.00 30.62 3.85
12 13 2.278661 GAGCGTTCGATCCGGACC 60.279 66.667 6.12 0.00 30.62 4.46
13 14 1.872679 GTGAGCGTTCGATCCGGAC 60.873 63.158 6.12 0.00 31.15 4.79
14 15 2.488355 GTGAGCGTTCGATCCGGA 59.512 61.111 6.61 6.61 0.00 5.14
15 16 2.949678 CGTGAGCGTTCGATCCGG 60.950 66.667 7.94 0.00 0.00 5.14
16 17 1.934956 CTCGTGAGCGTTCGATCCG 60.935 63.158 7.94 10.47 39.49 4.18
17 18 1.586564 CCTCGTGAGCGTTCGATCC 60.587 63.158 7.94 0.00 39.49 3.36
18 19 1.586564 CCCTCGTGAGCGTTCGATC 60.587 63.158 3.48 3.48 39.49 3.69
19 20 2.490217 CCCTCGTGAGCGTTCGAT 59.510 61.111 0.00 0.00 39.49 3.59
20 21 3.744719 CCCCTCGTGAGCGTTCGA 61.745 66.667 0.00 0.00 39.49 3.71
21 22 4.796231 CCCCCTCGTGAGCGTTCG 62.796 72.222 0.00 0.00 39.49 3.95
53 54 0.251073 TAAGCGCCAGGAAGGGTAAC 59.749 55.000 2.29 0.00 38.09 2.50
54 55 0.985760 TTAAGCGCCAGGAAGGGTAA 59.014 50.000 2.29 0.00 38.09 2.85
55 56 0.539986 CTTAAGCGCCAGGAAGGGTA 59.460 55.000 2.29 0.00 38.09 3.69
56 57 1.299976 CTTAAGCGCCAGGAAGGGT 59.700 57.895 2.29 0.00 38.09 4.34
57 58 1.452108 CCTTAAGCGCCAGGAAGGG 60.452 63.158 11.64 0.00 35.74 3.95
58 59 2.115291 GCCTTAAGCGCCAGGAAGG 61.115 63.158 19.51 18.76 41.26 3.46
59 60 3.502572 GCCTTAAGCGCCAGGAAG 58.497 61.111 19.51 10.76 30.81 3.46
68 69 2.514824 CCTCCCAGCGCCTTAAGC 60.515 66.667 2.29 0.00 38.52 3.09
69 70 1.144936 CTCCTCCCAGCGCCTTAAG 59.855 63.158 2.29 0.00 0.00 1.85
70 71 2.367202 CCTCCTCCCAGCGCCTTAA 61.367 63.158 2.29 0.00 0.00 1.85
71 72 2.764128 CCTCCTCCCAGCGCCTTA 60.764 66.667 2.29 0.00 0.00 2.69
75 76 3.394836 AAGACCTCCTCCCAGCGC 61.395 66.667 0.00 0.00 0.00 5.92
76 77 2.581354 CAAGACCTCCTCCCAGCG 59.419 66.667 0.00 0.00 0.00 5.18
77 78 2.129555 TTGCAAGACCTCCTCCCAGC 62.130 60.000 0.00 0.00 0.00 4.85
78 79 0.622665 ATTGCAAGACCTCCTCCCAG 59.377 55.000 4.94 0.00 0.00 4.45
79 80 0.620556 GATTGCAAGACCTCCTCCCA 59.379 55.000 4.94 0.00 0.00 4.37
80 81 0.462759 CGATTGCAAGACCTCCTCCC 60.463 60.000 4.94 0.00 0.00 4.30
81 82 0.250513 ACGATTGCAAGACCTCCTCC 59.749 55.000 4.94 0.00 0.00 4.30
82 83 2.100605 AACGATTGCAAGACCTCCTC 57.899 50.000 4.94 0.00 0.00 3.71
83 84 2.567615 ACTAACGATTGCAAGACCTCCT 59.432 45.455 4.94 0.00 0.00 3.69
84 85 2.673368 CACTAACGATTGCAAGACCTCC 59.327 50.000 4.94 0.00 0.00 4.30
85 86 2.094417 GCACTAACGATTGCAAGACCTC 59.906 50.000 4.94 0.00 38.68 3.85
86 87 2.076863 GCACTAACGATTGCAAGACCT 58.923 47.619 4.94 0.00 38.68 3.85
87 88 2.076863 AGCACTAACGATTGCAAGACC 58.923 47.619 4.94 0.00 41.48 3.85
88 89 2.726066 GCAGCACTAACGATTGCAAGAC 60.726 50.000 4.94 0.55 41.48 3.01
89 90 1.464608 GCAGCACTAACGATTGCAAGA 59.535 47.619 4.94 0.00 41.48 3.02
90 91 1.787989 CGCAGCACTAACGATTGCAAG 60.788 52.381 4.94 0.00 41.48 4.01
91 92 0.165727 CGCAGCACTAACGATTGCAA 59.834 50.000 0.00 0.00 41.48 4.08
92 93 0.669012 TCGCAGCACTAACGATTGCA 60.669 50.000 0.00 0.00 41.48 4.08
93 94 0.247301 GTCGCAGCACTAACGATTGC 60.247 55.000 0.00 0.00 38.22 3.56
94 95 1.059692 CAGTCGCAGCACTAACGATTG 59.940 52.381 0.00 0.00 38.22 2.67
95 96 1.350193 CAGTCGCAGCACTAACGATT 58.650 50.000 0.00 0.00 38.22 3.34
96 97 1.078759 GCAGTCGCAGCACTAACGAT 61.079 55.000 0.00 0.00 38.22 3.73
97 98 1.733041 GCAGTCGCAGCACTAACGA 60.733 57.895 0.00 0.00 38.36 3.85
98 99 1.678269 GAGCAGTCGCAGCACTAACG 61.678 60.000 0.00 0.00 42.27 3.18
99 100 0.667487 TGAGCAGTCGCAGCACTAAC 60.667 55.000 0.00 0.00 42.27 2.34
100 101 0.667487 GTGAGCAGTCGCAGCACTAA 60.667 55.000 0.00 0.00 40.49 2.24
101 102 1.080501 GTGAGCAGTCGCAGCACTA 60.081 57.895 0.00 0.00 40.49 2.74
102 103 2.356793 GTGAGCAGTCGCAGCACT 60.357 61.111 0.00 0.00 40.49 4.40
103 104 3.771491 CGTGAGCAGTCGCAGCAC 61.771 66.667 0.00 0.00 42.27 4.40
104 105 4.284860 ACGTGAGCAGTCGCAGCA 62.285 61.111 0.00 0.00 42.27 4.41
105 106 3.771491 CACGTGAGCAGTCGCAGC 61.771 66.667 10.90 0.00 42.27 5.25
106 107 3.771491 GCACGTGAGCAGTCGCAG 61.771 66.667 22.23 0.00 42.27 5.18
109 110 1.665544 CTTACGCACGTGAGCAGTCG 61.666 60.000 22.23 14.55 0.00 4.18
110 111 0.663568 ACTTACGCACGTGAGCAGTC 60.664 55.000 22.23 0.00 35.47 3.51
111 112 0.594602 TACTTACGCACGTGAGCAGT 59.405 50.000 22.23 22.35 35.47 4.40
112 113 0.982673 GTACTTACGCACGTGAGCAG 59.017 55.000 22.23 17.77 35.47 4.24
113 114 0.311477 TGTACTTACGCACGTGAGCA 59.689 50.000 22.23 3.18 35.47 4.26
114 115 1.320555 CATGTACTTACGCACGTGAGC 59.679 52.381 22.23 3.21 35.47 4.26
115 116 1.917955 CCATGTACTTACGCACGTGAG 59.082 52.381 22.23 20.09 37.68 3.51
116 117 1.985334 CCATGTACTTACGCACGTGA 58.015 50.000 22.23 0.00 34.26 4.35
117 118 0.368907 GCCATGTACTTACGCACGTG 59.631 55.000 12.28 12.28 0.00 4.49
118 119 0.738412 GGCCATGTACTTACGCACGT 60.738 55.000 0.00 0.00 0.00 4.49
119 120 1.748647 CGGCCATGTACTTACGCACG 61.749 60.000 2.24 0.00 0.00 5.34
120 121 0.458889 TCGGCCATGTACTTACGCAC 60.459 55.000 2.24 0.00 0.00 5.34
121 122 0.458889 GTCGGCCATGTACTTACGCA 60.459 55.000 2.24 0.00 0.00 5.24
122 123 1.149964 GGTCGGCCATGTACTTACGC 61.150 60.000 0.00 0.00 34.09 4.42
123 124 0.529119 GGGTCGGCCATGTACTTACG 60.529 60.000 9.07 0.00 36.17 3.18
124 125 0.538118 TGGGTCGGCCATGTACTTAC 59.462 55.000 9.07 0.00 36.17 2.34
125 126 1.502690 ATGGGTCGGCCATGTACTTA 58.497 50.000 9.07 0.00 36.17 2.24
126 127 0.623723 AATGGGTCGGCCATGTACTT 59.376 50.000 9.07 0.00 36.17 2.24
127 128 1.416401 CTAATGGGTCGGCCATGTACT 59.584 52.381 9.07 0.00 36.17 2.73
128 129 1.542547 CCTAATGGGTCGGCCATGTAC 60.543 57.143 9.07 0.00 36.17 2.90
129 130 0.762418 CCTAATGGGTCGGCCATGTA 59.238 55.000 9.07 0.00 36.17 2.29
130 131 0.986019 TCCTAATGGGTCGGCCATGT 60.986 55.000 9.07 0.00 36.17 3.21
131 132 0.250467 CTCCTAATGGGTCGGCCATG 60.250 60.000 9.07 0.00 36.17 3.66
132 133 0.694444 ACTCCTAATGGGTCGGCCAT 60.694 55.000 9.07 0.00 36.17 4.40
133 134 1.306654 ACTCCTAATGGGTCGGCCA 60.307 57.895 9.07 0.00 36.17 5.36
134 135 1.446366 GACTCCTAATGGGTCGGCC 59.554 63.158 0.00 0.00 36.25 6.13
135 136 1.049289 AGGACTCCTAATGGGTCGGC 61.049 60.000 0.00 0.00 35.64 5.54
136 137 1.413077 GAAGGACTCCTAATGGGTCGG 59.587 57.143 0.00 0.00 35.64 4.79
137 138 1.413077 GGAAGGACTCCTAATGGGTCG 59.587 57.143 0.00 0.00 41.61 4.79
138 139 1.769465 GGGAAGGACTCCTAATGGGTC 59.231 57.143 0.00 0.00 44.68 4.46
139 140 1.082194 TGGGAAGGACTCCTAATGGGT 59.918 52.381 0.00 0.00 44.68 4.51
140 141 1.490910 GTGGGAAGGACTCCTAATGGG 59.509 57.143 0.00 0.00 44.68 4.00
141 142 1.139058 CGTGGGAAGGACTCCTAATGG 59.861 57.143 0.00 0.00 44.68 3.16
142 143 1.473434 GCGTGGGAAGGACTCCTAATG 60.473 57.143 0.00 0.00 44.68 1.90
143 144 0.831307 GCGTGGGAAGGACTCCTAAT 59.169 55.000 0.00 0.00 44.68 1.73
144 145 1.601419 CGCGTGGGAAGGACTCCTAA 61.601 60.000 0.00 0.00 44.68 2.69
145 146 2.050350 CGCGTGGGAAGGACTCCTA 61.050 63.158 0.00 0.00 44.68 2.94
146 147 3.382832 CGCGTGGGAAGGACTCCT 61.383 66.667 0.00 0.00 44.68 3.69
147 148 2.837371 CTTCGCGTGGGAAGGACTCC 62.837 65.000 16.42 0.00 44.54 3.85
148 149 1.446272 CTTCGCGTGGGAAGGACTC 60.446 63.158 16.42 0.00 39.76 3.36
149 150 2.207924 ACTTCGCGTGGGAAGGACT 61.208 57.895 24.66 6.95 46.06 3.85
150 151 2.027625 CACTTCGCGTGGGAAGGAC 61.028 63.158 24.66 0.00 46.06 3.85
151 152 1.541310 ATCACTTCGCGTGGGAAGGA 61.541 55.000 24.66 19.45 46.06 3.36
152 153 0.673644 AATCACTTCGCGTGGGAAGG 60.674 55.000 24.66 15.97 46.06 3.46
153 154 0.443869 CAATCACTTCGCGTGGGAAG 59.556 55.000 20.96 20.96 46.94 3.46
154 155 0.034198 TCAATCACTTCGCGTGGGAA 59.966 50.000 5.77 0.00 43.94 3.97
155 156 0.034198 TTCAATCACTTCGCGTGGGA 59.966 50.000 5.77 7.72 43.94 4.37
156 157 0.165944 GTTCAATCACTTCGCGTGGG 59.834 55.000 5.77 1.24 43.94 4.61
157 158 0.865111 TGTTCAATCACTTCGCGTGG 59.135 50.000 5.77 2.41 43.94 4.94
158 159 2.220824 TCTTGTTCAATCACTTCGCGTG 59.779 45.455 5.77 2.81 45.18 5.34
159 160 2.479837 TCTTGTTCAATCACTTCGCGT 58.520 42.857 5.77 0.00 0.00 6.01
160 161 3.519908 TTCTTGTTCAATCACTTCGCG 57.480 42.857 0.00 0.00 0.00 5.87
161 162 5.509622 GCTATTTCTTGTTCAATCACTTCGC 59.490 40.000 0.00 0.00 0.00 4.70
162 163 6.602179 TGCTATTTCTTGTTCAATCACTTCG 58.398 36.000 0.00 0.00 0.00 3.79
163 164 7.588512 ACTGCTATTTCTTGTTCAATCACTTC 58.411 34.615 0.00 0.00 0.00 3.01
164 165 7.516198 ACTGCTATTTCTTGTTCAATCACTT 57.484 32.000 0.00 0.00 0.00 3.16
165 166 7.516198 AACTGCTATTTCTTGTTCAATCACT 57.484 32.000 0.00 0.00 0.00 3.41
166 167 8.482429 CAAAACTGCTATTTCTTGTTCAATCAC 58.518 33.333 0.00 0.00 0.00 3.06
167 168 7.652909 CCAAAACTGCTATTTCTTGTTCAATCA 59.347 33.333 0.00 0.00 0.00 2.57
168 169 7.867403 TCCAAAACTGCTATTTCTTGTTCAATC 59.133 33.333 0.00 0.00 0.00 2.67
169 170 7.725251 TCCAAAACTGCTATTTCTTGTTCAAT 58.275 30.769 0.00 0.00 0.00 2.57
170 171 7.106439 TCCAAAACTGCTATTTCTTGTTCAA 57.894 32.000 0.00 0.00 0.00 2.69
171 172 6.707440 TCCAAAACTGCTATTTCTTGTTCA 57.293 33.333 0.00 0.00 0.00 3.18
172 173 7.042725 GGTTTCCAAAACTGCTATTTCTTGTTC 60.043 37.037 2.90 0.00 0.00 3.18
173 174 6.761242 GGTTTCCAAAACTGCTATTTCTTGTT 59.239 34.615 2.90 0.00 0.00 2.83
174 175 6.098266 AGGTTTCCAAAACTGCTATTTCTTGT 59.902 34.615 2.90 0.00 33.95 3.16
175 176 6.515832 AGGTTTCCAAAACTGCTATTTCTTG 58.484 36.000 2.90 0.00 33.95 3.02
176 177 6.731292 AGGTTTCCAAAACTGCTATTTCTT 57.269 33.333 2.90 0.00 33.95 2.52
177 178 6.551227 AGAAGGTTTCCAAAACTGCTATTTCT 59.449 34.615 0.00 0.00 39.87 2.52
178 179 6.749139 AGAAGGTTTCCAAAACTGCTATTTC 58.251 36.000 0.00 0.00 39.87 2.17
179 180 6.731292 AGAAGGTTTCCAAAACTGCTATTT 57.269 33.333 0.00 0.00 39.87 1.40
180 181 7.231467 TCTAGAAGGTTTCCAAAACTGCTATT 58.769 34.615 5.42 0.00 41.78 1.73
181 182 6.779860 TCTAGAAGGTTTCCAAAACTGCTAT 58.220 36.000 5.42 0.00 41.78 2.97
182 183 6.182507 TCTAGAAGGTTTCCAAAACTGCTA 57.817 37.500 4.94 4.94 39.87 3.49
183 184 5.048846 TCTAGAAGGTTTCCAAAACTGCT 57.951 39.130 3.03 3.03 43.96 4.24
184 185 5.763088 CTTCTAGAAGGTTTCCAAAACTGC 58.237 41.667 22.67 0.00 35.78 4.40
198 199 7.809546 AGGAAAACTTTGAACCTTCTAGAAG 57.190 36.000 23.31 23.31 38.14 2.85
210 211 9.430623 AGAAAATTTCGAAAAGGAAAACTTTGA 57.569 25.926 15.66 0.00 40.64 2.69
211 212 9.689075 GAGAAAATTTCGAAAAGGAAAACTTTG 57.311 29.630 15.66 0.00 40.64 2.77
212 213 9.653287 AGAGAAAATTTCGAAAAGGAAAACTTT 57.347 25.926 15.66 5.41 42.10 2.66
213 214 9.653287 AAGAGAAAATTTCGAAAAGGAAAACTT 57.347 25.926 15.66 11.85 39.19 2.66
214 215 9.302345 GAAGAGAAAATTTCGAAAAGGAAAACT 57.698 29.630 15.66 8.08 39.19 2.66
215 216 9.302345 AGAAGAGAAAATTTCGAAAAGGAAAAC 57.698 29.630 15.66 4.66 39.19 2.43
216 217 9.869757 AAGAAGAGAAAATTTCGAAAAGGAAAA 57.130 25.926 15.66 0.00 39.19 2.29
217 218 9.869757 AAAGAAGAGAAAATTTCGAAAAGGAAA 57.130 25.926 15.66 0.00 39.96 3.13
218 219 9.869757 AAAAGAAGAGAAAATTTCGAAAAGGAA 57.130 25.926 15.66 0.00 34.02 3.36
219 220 9.869757 AAAAAGAAGAGAAAATTTCGAAAAGGA 57.130 25.926 15.66 0.00 34.02 3.36
428 430 9.305925 GTGAACACTTTTGAATTTCTGAAGATT 57.694 29.630 14.85 10.28 0.00 2.40
429 431 7.645340 CGTGAACACTTTTGAATTTCTGAAGAT 59.355 33.333 14.85 4.77 0.00 2.40
442 444 6.288419 CACTTTTTCAACGTGAACACTTTTG 58.712 36.000 0.00 6.60 35.89 2.44
447 449 3.828786 ACCACTTTTTCAACGTGAACAC 58.171 40.909 0.00 0.00 35.89 3.32
449 451 4.086199 TGACCACTTTTTCAACGTGAAC 57.914 40.909 0.00 0.00 35.89 3.18
528 531 9.489393 GAATTTTCACAGAACAATTTTTGGAAC 57.511 29.630 0.00 0.00 34.12 3.62
531 534 9.706846 GAAGAATTTTCACAGAACAATTTTTGG 57.293 29.630 0.00 0.00 34.12 3.28
540 543 4.128554 TCGCGAAGAATTTTCACAGAAC 57.871 40.909 6.20 0.00 0.00 3.01
554 557 9.871359 CACTGAATAATTTTTAAATTCGCGAAG 57.129 29.630 27.20 9.21 39.24 3.79
671 674 9.849166 GAAATTTTGCCAAATTCATGAATTCAT 57.151 25.926 29.08 15.36 41.02 2.57
672 675 8.847196 TGAAATTTTGCCAAATTCATGAATTCA 58.153 25.926 29.08 21.06 41.02 2.57
673 676 9.337091 CTGAAATTTTGCCAAATTCATGAATTC 57.663 29.630 29.08 19.05 41.02 2.17
674 677 8.852135 ACTGAAATTTTGCCAAATTCATGAATT 58.148 25.926 24.83 24.83 41.02 2.17
688 691 3.363341 TCCCGTTCACTGAAATTTTGC 57.637 42.857 0.00 0.00 0.00 3.68
696 699 3.004315 GCTTTCAAAATCCCGTTCACTGA 59.996 43.478 0.00 0.00 0.00 3.41
706 709 5.905480 AACATTGTTCGCTTTCAAAATCC 57.095 34.783 0.00 0.00 0.00 3.01
713 716 4.146443 GCAGTGTAAACATTGTTCGCTTTC 59.854 41.667 1.83 0.00 36.18 2.62
714 717 4.041723 GCAGTGTAAACATTGTTCGCTTT 58.958 39.130 1.83 0.00 36.18 3.51
718 721 4.209452 AGTGCAGTGTAAACATTGTTCG 57.791 40.909 1.83 0.00 36.18 3.95
721 724 4.515191 CAGGTAGTGCAGTGTAAACATTGT 59.485 41.667 3.69 0.00 36.18 2.71
734 737 0.253044 GGGCTGAATCAGGTAGTGCA 59.747 55.000 12.66 0.00 31.21 4.57
739 742 0.824109 CTGACGGGCTGAATCAGGTA 59.176 55.000 12.66 0.00 36.92 3.08
742 745 1.153289 CCCTGACGGGCTGAATCAG 60.153 63.158 5.78 5.78 45.33 2.90
752 755 4.802051 CATGGCCCACCCTGACGG 62.802 72.222 0.00 0.00 33.64 4.79
769 772 2.079925 CTGCAGTGTAAAGAAGGCCTC 58.920 52.381 5.23 0.00 0.00 4.70
818 821 2.335712 CCTGGTTCTGCGAAAGGGC 61.336 63.158 0.00 0.00 0.00 5.19
871 874 1.829849 AGAGGGGTTAAGCGGTTACTC 59.170 52.381 6.56 10.16 0.00 2.59
876 879 0.976590 GGAGAGAGGGGTTAAGCGGT 60.977 60.000 0.00 0.00 0.00 5.68
881 884 0.976073 CGGCTGGAGAGAGGGGTTAA 60.976 60.000 0.00 0.00 0.00 2.01
983 989 1.204941 CCATACCTGCCGCCTATCTAC 59.795 57.143 0.00 0.00 0.00 2.59
984 990 1.557099 CCATACCTGCCGCCTATCTA 58.443 55.000 0.00 0.00 0.00 1.98
987 993 2.750350 GCCATACCTGCCGCCTAT 59.250 61.111 0.00 0.00 0.00 2.57
988 994 3.923864 CGCCATACCTGCCGCCTA 61.924 66.667 0.00 0.00 0.00 3.93
999 1005 1.758440 GATGCACCTCCTCCGCCATA 61.758 60.000 0.00 0.00 0.00 2.74
1035 1041 3.834799 CGGTAGTCCTCCGCCCAC 61.835 72.222 0.00 0.00 41.48 4.61
1101 1107 5.108385 AGAAAACAACAAGTTAGCGATGG 57.892 39.130 0.00 0.00 40.26 3.51
1105 1111 5.205565 GGAGAAGAAAACAACAAGTTAGCG 58.794 41.667 0.00 0.00 40.26 4.26
1115 1121 7.282585 TGAAGAAGAGATGGAGAAGAAAACAA 58.717 34.615 0.00 0.00 0.00 2.83
1120 1126 7.332926 CGAAATTGAAGAAGAGATGGAGAAGAA 59.667 37.037 0.00 0.00 0.00 2.52
1171 1195 1.705186 TCCAACTTCCCAAGAGAAGGG 59.295 52.381 6.28 0.00 46.24 3.95
1216 1240 3.580895 TGGTACTAGAACACATTGGAGCA 59.419 43.478 0.00 0.00 0.00 4.26
1218 1242 7.687941 AAATTGGTACTAGAACACATTGGAG 57.312 36.000 0.00 0.00 0.00 3.86
1319 1349 6.405176 GGCCAATCCTACAGAAAAAGATTCAG 60.405 42.308 0.00 0.00 0.00 3.02
1328 1358 1.340991 GGCTGGCCAATCCTACAGAAA 60.341 52.381 7.01 0.00 35.81 2.52
1334 1364 2.443394 CCTCGGCTGGCCAATCCTA 61.443 63.158 18.48 9.28 35.37 2.94
1374 1404 3.061322 CCACACAATTTGCATTGGAGTG 58.939 45.455 15.39 15.39 43.82 3.51
1440 1470 9.319143 TCAGCTCTTAACATTCTTAGCTAATTC 57.681 33.333 6.64 0.00 38.20 2.17
1445 1475 5.584251 GCTTCAGCTCTTAACATTCTTAGCT 59.416 40.000 0.00 0.00 40.79 3.32
1480 1510 5.715753 ACTCTATTCCCTTATATGGACGTCC 59.284 44.000 28.17 28.17 0.00 4.79
1500 1530 9.388506 CCAAAGATGATAAATTCACAGTACTCT 57.611 33.333 0.00 0.00 37.11 3.24
1508 1538 8.506168 TGTAGGTCCAAAGATGATAAATTCAC 57.494 34.615 0.00 0.00 37.11 3.18
1532 1562 5.940470 AGAATTTAGGGTGCTGTTAAGTCTG 59.060 40.000 0.00 0.00 0.00 3.51
1533 1563 6.128138 AGAATTTAGGGTGCTGTTAAGTCT 57.872 37.500 0.00 0.00 0.00 3.24
1534 1564 6.206829 ACAAGAATTTAGGGTGCTGTTAAGTC 59.793 38.462 0.00 0.00 0.00 3.01
1535 1565 6.068670 ACAAGAATTTAGGGTGCTGTTAAGT 58.931 36.000 0.00 0.00 0.00 2.24
1536 1566 6.575162 ACAAGAATTTAGGGTGCTGTTAAG 57.425 37.500 0.00 0.00 0.00 1.85
1537 1567 5.180492 CGACAAGAATTTAGGGTGCTGTTAA 59.820 40.000 0.00 0.00 0.00 2.01
1538 1568 4.693566 CGACAAGAATTTAGGGTGCTGTTA 59.306 41.667 0.00 0.00 0.00 2.41
1539 1569 3.502211 CGACAAGAATTTAGGGTGCTGTT 59.498 43.478 0.00 0.00 0.00 3.16
1544 1578 4.876107 AGTATGCGACAAGAATTTAGGGTG 59.124 41.667 0.00 0.00 0.00 4.61
1545 1579 5.099042 AGTATGCGACAAGAATTTAGGGT 57.901 39.130 0.00 0.00 0.00 4.34
1560 1594 6.128715 CCATCATAGAAACAAGCTAGTATGCG 60.129 42.308 0.00 0.00 38.13 4.73
1592 1627 5.708230 ACTACTAGTGCTGAGATATAGGTGC 59.292 44.000 5.39 0.00 0.00 5.01
1593 1628 7.753309 AACTACTAGTGCTGAGATATAGGTG 57.247 40.000 5.39 0.00 0.00 4.00
1598 1633 6.127054 TGGCAAAACTACTAGTGCTGAGATAT 60.127 38.462 5.39 0.00 37.17 1.63
1603 1638 3.762407 TGGCAAAACTACTAGTGCTGA 57.238 42.857 5.39 0.00 37.17 4.26
1739 1775 0.760189 ACACATGCTTGCCTTTGGGT 60.760 50.000 0.00 0.00 34.45 4.51
1752 1788 5.245531 ACTACCAATGGTAAGTGACACATG 58.754 41.667 13.73 0.37 37.76 3.21
1798 1834 7.939039 ACTAACCTCAAATCAAACTGAAGATCA 59.061 33.333 0.00 0.00 0.00 2.92
1809 1845 7.054124 AGTCAGACAAACTAACCTCAAATCAA 58.946 34.615 2.66 0.00 0.00 2.57
1970 2009 6.588719 TCATTATTTTTCCCCACAGAACAG 57.411 37.500 0.00 0.00 0.00 3.16
1978 2017 8.709308 TGTTTTCTTCTTCATTATTTTTCCCCA 58.291 29.630 0.00 0.00 0.00 4.96
2101 2140 7.376072 GGACATTATTAGCACGCTTTGATTTAC 59.624 37.037 0.00 0.00 0.00 2.01
2102 2141 7.414436 GGACATTATTAGCACGCTTTGATTTA 58.586 34.615 0.00 0.00 0.00 1.40
2209 2248 7.281549 ACAAAAACACTCGGACTTTACACTTAT 59.718 33.333 0.00 0.00 0.00 1.73
2214 2253 5.180271 AGACAAAAACACTCGGACTTTACA 58.820 37.500 0.00 0.00 0.00 2.41
2243 2282 6.324561 AGGAAGAACTGCAGAAAGAAAATC 57.675 37.500 23.35 7.08 0.00 2.17
2287 2326 1.192146 TCCCCCTCGACTGTTCCTTG 61.192 60.000 0.00 0.00 0.00 3.61
2296 2335 0.605589 CACTGGTTTTCCCCCTCGAC 60.606 60.000 0.00 0.00 39.73 4.20
2354 2393 6.998074 TCTTCATCATTACCCATGTCCATTAC 59.002 38.462 0.00 0.00 34.06 1.89
2644 2683 2.094675 AGCTTACATGTGCCAACATCC 58.905 47.619 9.11 0.00 45.50 3.51
2680 2719 6.599244 GGGACATCAGTTGAAGTTCATATTGA 59.401 38.462 6.36 10.93 0.00 2.57
2864 2903 3.420893 TGCTAAGTATTGCACAAGCCTT 58.579 40.909 0.00 3.69 41.13 4.35
2918 2962 5.263599 TCCAAAAGCAGATGTACAATGGAT 58.736 37.500 0.00 0.00 29.93 3.41
2951 2995 3.726557 AAAGGAGCATCAATCTGGACA 57.273 42.857 0.00 0.00 36.25 4.02
2952 2996 4.460382 TGAAAAAGGAGCATCAATCTGGAC 59.540 41.667 0.00 0.00 36.25 4.02
3048 3166 3.904339 AGAGTTTGGTGTGGAGAGTGTAT 59.096 43.478 0.00 0.00 0.00 2.29
3095 3248 4.011966 TCCATTCCATTCATCTGGATCG 57.988 45.455 0.00 0.00 44.66 3.69
3125 3278 9.625747 TCTCATTATGCATGTGGAGTTTAATTA 57.374 29.630 10.16 0.00 34.06 1.40
3180 3333 4.587262 GGGAAACCCTATTTCCGCAATAAT 59.413 41.667 11.33 0.00 46.77 1.28
3183 3336 2.384828 GGGAAACCCTATTTCCGCAAT 58.615 47.619 11.33 0.00 46.77 3.56
3185 3338 3.581163 GGGAAACCCTATTTCCGCA 57.419 52.632 11.33 0.00 46.77 5.69
3233 3633 1.133407 GCACCTTTCGTTGGTTGTTCA 59.867 47.619 0.00 0.00 35.28 3.18
3245 3645 0.955919 CTTCCGTCCCAGCACCTTTC 60.956 60.000 0.00 0.00 0.00 2.62
3259 3659 3.730761 GTGCCTGTGCTGCTTCCG 61.731 66.667 0.00 0.00 38.71 4.30
3289 3689 5.009410 CACAACTTTCATTTCTCAGCCTTCT 59.991 40.000 0.00 0.00 0.00 2.85
3313 3713 5.449304 ACTACAAACAAATAAAGACAGCGC 58.551 37.500 0.00 0.00 0.00 5.92
3562 4022 4.444449 GGTGGAGTCCTACAAAACTGACTT 60.444 45.833 11.33 0.00 38.15 3.01
3610 4070 4.152402 CACCACGAGAAATTCAAGACGAAT 59.848 41.667 0.00 0.00 46.70 3.34
3618 4078 6.693466 TGATAGTTACACCACGAGAAATTCA 58.307 36.000 0.00 0.00 0.00 2.57
3698 4160 9.817809 TGTGCCACTTGTGTATTATTTTAAAAA 57.182 25.926 4.44 0.00 0.00 1.94
3699 4161 9.988815 ATGTGCCACTTGTGTATTATTTTAAAA 57.011 25.926 2.51 2.51 0.00 1.52
3700 4162 9.632807 GATGTGCCACTTGTGTATTATTTTAAA 57.367 29.630 0.00 0.00 0.00 1.52
3701 4163 8.247562 GGATGTGCCACTTGTGTATTATTTTAA 58.752 33.333 0.00 0.00 36.34 1.52
3702 4164 7.394641 TGGATGTGCCACTTGTGTATTATTTTA 59.605 33.333 0.00 0.00 43.33 1.52
3735 4197 6.127758 GCTCAATGGTATATGGTTGTTTCACA 60.128 38.462 0.00 0.00 0.00 3.58
3783 4245 2.097466 ACCTGTGAACAAGTTGAAAGCG 59.903 45.455 10.54 0.00 0.00 4.68
3843 4305 3.282021 GACAAAGGCCTGCTCAATGATA 58.718 45.455 5.69 0.00 0.00 2.15
3973 4435 7.051696 ACCCAAATTCCTTTCCCTTTCTATA 57.948 36.000 0.00 0.00 0.00 1.31
4073 4535 5.275067 AGCATATCAACTCTTGGAGAGAC 57.725 43.478 11.65 0.00 45.07 3.36
4074 4536 5.451103 CGAAGCATATCAACTCTTGGAGAGA 60.451 44.000 11.65 2.95 45.07 3.10
4098 4561 0.318762 AATCGAGCCGGCTAGATTCC 59.681 55.000 41.88 25.15 42.04 3.01
4103 4566 3.032609 CGCAATCGAGCCGGCTAG 61.033 66.667 32.97 30.58 38.10 3.42
4128 4591 4.627467 CCTCTCCTTTATGTTGACGTCTTG 59.373 45.833 17.92 0.00 0.00 3.02
4131 4594 4.425520 CTCCTCTCCTTTATGTTGACGTC 58.574 47.826 9.11 9.11 0.00 4.34
4143 4606 2.046292 GCTAATCCTGCTCCTCTCCTT 58.954 52.381 0.00 0.00 0.00 3.36
4160 4623 1.473497 TAACACCACACGCCCTGCTA 61.473 55.000 0.00 0.00 0.00 3.49
4202 4665 6.198650 TGATCACAAAGCATTCTTACATGG 57.801 37.500 0.00 0.00 31.02 3.66
4208 4671 3.192844 CCAGCTGATCACAAAGCATTCTT 59.807 43.478 17.39 0.00 42.06 2.52
4303 4769 6.068473 ACGGGAGATAAAAAGACACAAAAC 57.932 37.500 0.00 0.00 0.00 2.43
4304 4770 6.500041 CAACGGGAGATAAAAAGACACAAAA 58.500 36.000 0.00 0.00 0.00 2.44
4305 4771 5.506649 GCAACGGGAGATAAAAAGACACAAA 60.507 40.000 0.00 0.00 0.00 2.83
4362 4828 1.638467 GCGCGCCTTCATGTTCTAG 59.362 57.895 23.24 0.00 0.00 2.43
4363 4829 2.164663 CGCGCGCCTTCATGTTCTA 61.165 57.895 27.72 0.00 0.00 2.10
4366 4832 3.353836 AACGCGCGCCTTCATGTT 61.354 55.556 32.58 19.36 0.00 2.71
4382 4848 4.849310 GATAGGCGGGCGTGGCAA 62.849 66.667 4.82 0.00 36.77 4.52
4384 4850 4.547367 AAGATAGGCGGGCGTGGC 62.547 66.667 0.00 0.00 0.00 5.01
4385 4851 2.587322 TTCAAGATAGGCGGGCGTGG 62.587 60.000 0.00 0.00 0.00 4.94
4386 4852 1.153449 TTCAAGATAGGCGGGCGTG 60.153 57.895 0.00 0.00 0.00 5.34
4387 4853 1.144057 CTTCAAGATAGGCGGGCGT 59.856 57.895 0.00 0.00 0.00 5.68
4389 4855 0.107165 AACCTTCAAGATAGGCGGGC 60.107 55.000 0.00 0.00 36.17 6.13
4391 4857 4.608948 ATCTAACCTTCAAGATAGGCGG 57.391 45.455 0.00 0.00 36.17 6.13
4392 4858 5.360591 ACAATCTAACCTTCAAGATAGGCG 58.639 41.667 0.00 0.00 36.17 5.52
4393 4859 7.501844 ACTACAATCTAACCTTCAAGATAGGC 58.498 38.462 0.00 0.00 36.17 3.93
4394 4860 8.696374 TGACTACAATCTAACCTTCAAGATAGG 58.304 37.037 0.00 0.00 38.79 2.57
4397 4863 8.762645 TCATGACTACAATCTAACCTTCAAGAT 58.237 33.333 0.00 0.00 33.87 2.40
4398 4864 8.134202 TCATGACTACAATCTAACCTTCAAGA 57.866 34.615 0.00 0.00 0.00 3.02
4399 4865 7.493971 CCTCATGACTACAATCTAACCTTCAAG 59.506 40.741 0.00 0.00 0.00 3.02
4400 4866 7.180229 TCCTCATGACTACAATCTAACCTTCAA 59.820 37.037 0.00 0.00 0.00 2.69
4401 4867 6.667848 TCCTCATGACTACAATCTAACCTTCA 59.332 38.462 0.00 0.00 0.00 3.02
4402 4868 7.113658 TCCTCATGACTACAATCTAACCTTC 57.886 40.000 0.00 0.00 0.00 3.46
4405 4871 8.561738 TTTTTCCTCATGACTACAATCTAACC 57.438 34.615 0.00 0.00 0.00 2.85
4410 4876 9.956720 CCAATATTTTTCCTCATGACTACAATC 57.043 33.333 0.00 0.00 0.00 2.67
4414 4880 9.614792 ACTACCAATATTTTTCCTCATGACTAC 57.385 33.333 0.00 0.00 0.00 2.73
4415 4881 9.613428 CACTACCAATATTTTTCCTCATGACTA 57.387 33.333 0.00 0.00 0.00 2.59
4416 4882 8.328758 TCACTACCAATATTTTTCCTCATGACT 58.671 33.333 0.00 0.00 0.00 3.41
4417 4883 8.506168 TCACTACCAATATTTTTCCTCATGAC 57.494 34.615 0.00 0.00 0.00 3.06
4419 4885 9.793252 CTTTCACTACCAATATTTTTCCTCATG 57.207 33.333 0.00 0.00 0.00 3.07
4420 4886 9.753674 TCTTTCACTACCAATATTTTTCCTCAT 57.246 29.630 0.00 0.00 0.00 2.90
4421 4887 9.231297 CTCTTTCACTACCAATATTTTTCCTCA 57.769 33.333 0.00 0.00 0.00 3.86
4422 4888 9.449719 TCTCTTTCACTACCAATATTTTTCCTC 57.550 33.333 0.00 0.00 0.00 3.71
4423 4889 9.807921 TTCTCTTTCACTACCAATATTTTTCCT 57.192 29.630 0.00 0.00 0.00 3.36
4433 4899 9.231297 CCTAAATTCATTCTCTTTCACTACCAA 57.769 33.333 0.00 0.00 0.00 3.67
4434 4900 7.829211 CCCTAAATTCATTCTCTTTCACTACCA 59.171 37.037 0.00 0.00 0.00 3.25
4435 4901 7.829706 ACCCTAAATTCATTCTCTTTCACTACC 59.170 37.037 0.00 0.00 0.00 3.18
4436 4902 8.794335 ACCCTAAATTCATTCTCTTTCACTAC 57.206 34.615 0.00 0.00 0.00 2.73
4459 5156 5.390613 GCAATGTGTGTTGTGTTCTATACC 58.609 41.667 0.00 0.00 0.00 2.73
4460 5157 5.390613 GGCAATGTGTGTTGTGTTCTATAC 58.609 41.667 0.00 0.00 0.00 1.47
4461 5158 4.153296 CGGCAATGTGTGTTGTGTTCTATA 59.847 41.667 0.00 0.00 0.00 1.31
4462 5159 3.058293 CGGCAATGTGTGTTGTGTTCTAT 60.058 43.478 0.00 0.00 0.00 1.98
4463 5160 2.289274 CGGCAATGTGTGTTGTGTTCTA 59.711 45.455 0.00 0.00 0.00 2.10
4465 5162 1.202245 ACGGCAATGTGTGTTGTGTTC 60.202 47.619 0.00 0.00 0.00 3.18
4467 5164 0.100325 CACGGCAATGTGTGTTGTGT 59.900 50.000 0.00 0.00 35.12 3.72
4468 5165 1.208009 GCACGGCAATGTGTGTTGTG 61.208 55.000 8.93 0.00 41.94 3.33
4469 5166 1.065600 GCACGGCAATGTGTGTTGT 59.934 52.632 8.93 0.00 41.94 3.32
4470 5167 0.318869 ATGCACGGCAATGTGTGTTG 60.319 50.000 2.68 0.00 43.62 3.33
4472 5169 1.286570 CATGCACGGCAATGTGTGT 59.713 52.632 2.68 0.00 43.62 3.72
4473 5170 2.089936 GCATGCACGGCAATGTGTG 61.090 57.895 14.21 3.91 43.62 3.82
4476 5173 2.569657 CTGCATGCACGGCAATGT 59.430 55.556 18.46 0.00 43.62 2.71
4477 5174 2.883730 GCTGCATGCACGGCAATG 60.884 61.111 22.91 11.10 43.62 2.82
4478 5175 4.137872 GGCTGCATGCACGGCAAT 62.138 61.111 27.15 0.00 43.62 3.56
4482 5179 2.537792 CTTTCAGGCTGCATGCACGG 62.538 60.000 18.46 9.68 45.15 4.94
4483 5180 1.154093 CTTTCAGGCTGCATGCACG 60.154 57.895 18.46 14.14 45.15 5.34
4484 5181 4.883026 CTTTCAGGCTGCATGCAC 57.117 55.556 18.46 13.69 45.15 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.