Multiple sequence alignment - TraesCS2A01G522900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G522900 chr2A 100.000 2435 0 0 1 2435 744942978 744945412 0.000000e+00 4497.0
1 TraesCS2A01G522900 chr2A 94.311 1459 81 2 1 1458 673552422 673550965 0.000000e+00 2233.0
2 TraesCS2A01G522900 chr2A 100.000 50 0 0 1524 1573 673550696 673550647 2.580000e-15 93.5
3 TraesCS2A01G522900 chr1D 92.600 1446 105 1 1 1446 423027260 423028703 0.000000e+00 2076.0
4 TraesCS2A01G522900 chr1D 94.017 117 4 3 1458 1574 423028793 423028906 8.950000e-40 174.0
5 TraesCS2A01G522900 chr1D 98.824 85 1 0 1488 1572 423029314 423029398 4.190000e-33 152.0
6 TraesCS2A01G522900 chr1D 100.000 77 0 0 1496 1572 423029467 423029543 2.520000e-30 143.0
7 TraesCS2A01G522900 chr1D 98.246 57 1 0 1517 1573 423028693 423028749 1.540000e-17 100.0
8 TraesCS2A01G522900 chr6D 86.115 1462 194 5 1 1460 303612827 303611373 0.000000e+00 1567.0
9 TraesCS2A01G522900 chr1B 83.926 1238 186 12 341 1573 393528541 393527312 0.000000e+00 1171.0
10 TraesCS2A01G522900 chr7D 84.505 626 77 10 825 1449 580485961 580485355 3.460000e-168 601.0
11 TraesCS2A01G522900 chr7D 72.555 634 147 22 959 1573 407257780 407258405 5.350000e-42 182.0
12 TraesCS2A01G522900 chr2D 81.671 431 47 18 1612 2037 613313668 613314071 1.800000e-86 329.0
13 TraesCS2A01G522900 chr2D 94.118 51 3 0 2142 2192 613315987 613316037 7.220000e-11 78.7
14 TraesCS2A01G522900 chr6A 70.795 1510 370 65 101 1573 73649981 73648506 1.840000e-71 279.0
15 TraesCS2A01G522900 chr7B 98.039 51 1 0 1523 1573 337929728 337929678 3.330000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G522900 chr2A 744942978 744945412 2434 False 4497.00 4497 100.0000 1 2435 1 chr2A.!!$F1 2434
1 TraesCS2A01G522900 chr2A 673550647 673552422 1775 True 1163.25 2233 97.1555 1 1573 2 chr2A.!!$R1 1572
2 TraesCS2A01G522900 chr1D 423027260 423029543 2283 False 529.00 2076 96.7374 1 1574 5 chr1D.!!$F1 1573
3 TraesCS2A01G522900 chr6D 303611373 303612827 1454 True 1567.00 1567 86.1150 1 1460 1 chr6D.!!$R1 1459
4 TraesCS2A01G522900 chr1B 393527312 393528541 1229 True 1171.00 1171 83.9260 341 1573 1 chr1B.!!$R1 1232
5 TraesCS2A01G522900 chr7D 580485355 580485961 606 True 601.00 601 84.5050 825 1449 1 chr7D.!!$R1 624
6 TraesCS2A01G522900 chr2D 613313668 613316037 2369 False 203.85 329 87.8945 1612 2192 2 chr2D.!!$F1 580
7 TraesCS2A01G522900 chr6A 73648506 73649981 1475 True 279.00 279 70.7950 101 1573 1 chr6A.!!$R1 1472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1005 0.036164 TGCGCCCAACAAGTGTAGAT 59.964 50.0 4.18 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 4615 0.027848 GTGTCGACGGCTAGCTAGTC 59.972 60.0 24.19 24.19 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.800826 GTTCGCCCCTATCCATGTT 57.199 52.632 0.00 0.00 0.00 2.71
99 100 1.133809 AGTCCTACCTTGGCTTGCCA 61.134 55.000 10.65 10.65 0.00 4.92
124 125 3.756963 GTCCACCTCCAAACTAAACATCC 59.243 47.826 0.00 0.00 0.00 3.51
134 135 4.871933 AACTAAACATCCCAGCCTTTTG 57.128 40.909 0.00 0.00 0.00 2.44
265 267 2.355599 CTATGAGCGCGCTCCTGG 60.356 66.667 46.98 37.89 42.09 4.45
300 302 2.413371 GCTTCAGGAGATTGACAAACGC 60.413 50.000 0.00 0.00 0.00 4.84
380 382 2.352032 GGGACCTAGTGTGCGCTCT 61.352 63.158 9.73 7.08 35.88 4.09
386 388 1.605457 CCTAGTGTGCGCTCTGTTCAA 60.605 52.381 9.73 0.00 0.00 2.69
481 483 4.260170 ACACGATTCTAACTCTACTCCGT 58.740 43.478 0.00 0.00 0.00 4.69
482 484 5.423015 ACACGATTCTAACTCTACTCCGTA 58.577 41.667 0.00 0.00 0.00 4.02
547 549 0.182299 CTTGGGAGCTGGGGATTCTC 59.818 60.000 0.00 0.00 0.00 2.87
567 569 2.031163 GCTTCTCCAGTGTGGCGT 59.969 61.111 0.00 0.00 37.47 5.68
664 674 1.177401 GAATGACCTTTGGCTCCCAC 58.823 55.000 0.00 0.00 30.78 4.61
683 693 0.811915 CACACCCAGACTACTCTCGG 59.188 60.000 0.00 0.00 31.18 4.63
690 700 0.612174 AGACTACTCTCGGCTGCCAA 60.612 55.000 20.29 0.00 0.00 4.52
692 702 1.681793 GACTACTCTCGGCTGCCAATA 59.318 52.381 20.29 2.16 0.00 1.90
728 738 1.559682 ACACTCCAATAGGCAATCGGT 59.440 47.619 0.00 0.00 33.74 4.69
853 864 3.369157 GGCTACAGTTAACTTGGATCCGT 60.369 47.826 5.07 1.54 0.00 4.69
994 1005 0.036164 TGCGCCCAACAAGTGTAGAT 59.964 50.000 4.18 0.00 0.00 1.98
1156 1167 1.825281 GCCGCTATGGGATGAGCTCT 61.825 60.000 16.19 0.00 38.63 4.09
1158 1169 2.106566 CCGCTATGGGATGAGCTCTAT 58.893 52.381 16.19 6.82 36.50 1.98
1248 1259 3.868077 GCTCTACAGTTCTCATCGCAATT 59.132 43.478 0.00 0.00 0.00 2.32
1293 1304 2.680913 CGCCAAGGTCTTTCGCCAG 61.681 63.158 0.00 0.00 0.00 4.85
1451 1463 8.942338 AGATTGTAACGCTATGTAATCTTTGA 57.058 30.769 0.00 0.00 32.63 2.69
1475 1565 1.075600 CCCCCACCTCTCTCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
1482 1572 0.108585 CCTCTCTCTCTCCCCTCTCG 59.891 65.000 0.00 0.00 0.00 4.04
1484 1574 1.225983 CTCTCTCTCCCCTCTCGCA 59.774 63.158 0.00 0.00 0.00 5.10
1500 1594 1.673337 GCAACCCCCGTGTAACCTC 60.673 63.158 0.00 0.00 0.00 3.85
1592 1885 4.519906 AATGGATTTGAAGTATCCGGGT 57.480 40.909 0.00 0.00 43.72 5.28
1593 1886 3.275617 TGGATTTGAAGTATCCGGGTG 57.724 47.619 0.00 0.00 43.72 4.61
1595 1888 2.943033 GGATTTGAAGTATCCGGGTGTG 59.057 50.000 0.00 0.00 32.82 3.82
1596 1889 3.370103 GGATTTGAAGTATCCGGGTGTGA 60.370 47.826 0.00 0.00 32.82 3.58
1597 1890 3.773418 TTTGAAGTATCCGGGTGTGAA 57.227 42.857 0.00 0.00 0.00 3.18
1598 1891 3.773418 TTGAAGTATCCGGGTGTGAAA 57.227 42.857 0.00 0.00 0.00 2.69
1599 1892 3.992943 TGAAGTATCCGGGTGTGAAAT 57.007 42.857 0.00 0.00 0.00 2.17
1601 1894 4.761975 TGAAGTATCCGGGTGTGAAATAC 58.238 43.478 0.00 0.00 0.00 1.89
1602 1895 4.223255 TGAAGTATCCGGGTGTGAAATACA 59.777 41.667 0.00 0.00 36.82 2.29
1604 1897 5.367945 AGTATCCGGGTGTGAAATACATT 57.632 39.130 0.00 0.00 42.24 2.71
1606 1899 7.074653 AGTATCCGGGTGTGAAATACATTAT 57.925 36.000 0.00 0.00 42.24 1.28
1607 1900 7.514721 AGTATCCGGGTGTGAAATACATTATT 58.485 34.615 0.00 0.00 42.24 1.40
1609 1902 9.275398 GTATCCGGGTGTGAAATACATTATTTA 57.725 33.333 0.00 0.00 42.24 1.40
1610 1903 7.795482 TCCGGGTGTGAAATACATTATTTAG 57.205 36.000 0.00 0.00 42.24 1.85
1625 1918 8.942338 ACATTATTTAGTGTTCTAATCTCGCA 57.058 30.769 0.00 0.00 36.25 5.10
1646 1939 2.032924 ACGGCTCTTTCCTTTTGAAACG 59.967 45.455 0.00 0.00 38.04 3.60
1660 1953 2.124903 TGAAACGAGCGTTGTCTCTTC 58.875 47.619 9.19 2.82 38.47 2.87
1672 1965 4.307432 GTTGTCTCTTCCGATCAACAGAA 58.693 43.478 0.00 0.00 35.70 3.02
1673 1966 4.600692 TGTCTCTTCCGATCAACAGAAA 57.399 40.909 0.00 0.00 0.00 2.52
1696 1989 2.500582 GTGCTTTCGCGCTTGAGC 60.501 61.111 15.86 15.86 43.21 4.26
1711 2004 0.247460 TGAGCCATTCGAGAGTGTGG 59.753 55.000 0.00 0.00 38.88 4.17
1715 2008 0.460987 CCATTCGAGAGTGTGGCCTC 60.461 60.000 3.32 0.00 32.10 4.70
1720 2013 1.439644 GAGAGTGTGGCCTCGGATC 59.560 63.158 3.32 0.00 36.56 3.36
1721 2014 2.105128 GAGTGTGGCCTCGGATCG 59.895 66.667 3.32 0.00 0.00 3.69
1756 2051 2.413239 CGATACCAATCATCAATGCCGC 60.413 50.000 0.00 0.00 31.93 6.53
1772 2286 3.731728 GCCCATGCCTGGAGTGGA 61.732 66.667 9.96 0.00 46.37 4.02
1773 2287 3.089838 CCCATGCCTGGAGTGGAA 58.910 61.111 9.96 0.00 46.37 3.53
1774 2288 1.383799 CCCATGCCTGGAGTGGAAA 59.616 57.895 9.96 0.00 46.37 3.13
1775 2289 0.967380 CCCATGCCTGGAGTGGAAAC 60.967 60.000 9.96 0.00 46.37 2.78
1776 2290 0.967380 CCATGCCTGGAGTGGAAACC 60.967 60.000 0.97 0.00 46.37 3.27
1777 2291 0.038744 CATGCCTGGAGTGGAAACCT 59.961 55.000 0.00 0.00 0.00 3.50
1778 2292 0.779997 ATGCCTGGAGTGGAAACCTT 59.220 50.000 0.00 0.00 0.00 3.50
1802 2316 4.033709 TCCAGAACCTTCTCCAGATTAGG 58.966 47.826 0.00 0.00 34.74 2.69
1806 2320 3.383698 ACCTTCTCCAGATTAGGTCGA 57.616 47.619 0.00 0.00 36.25 4.20
1843 2369 9.807649 AGTACCAATATAACCAGTTAAAGTACG 57.192 33.333 0.00 0.00 0.00 3.67
1851 2377 3.504520 ACCAGTTAAAGTACGCCCATTTG 59.495 43.478 0.00 0.00 0.00 2.32
1852 2378 3.754323 CCAGTTAAAGTACGCCCATTTGA 59.246 43.478 0.00 0.00 0.00 2.69
1856 2382 6.307800 CAGTTAAAGTACGCCCATTTGATTTG 59.692 38.462 0.00 0.00 0.00 2.32
1857 2383 6.207810 AGTTAAAGTACGCCCATTTGATTTGA 59.792 34.615 0.00 0.00 0.00 2.69
1858 2384 4.701956 AAGTACGCCCATTTGATTTGAG 57.298 40.909 0.00 0.00 0.00 3.02
1859 2385 3.686016 AGTACGCCCATTTGATTTGAGT 58.314 40.909 0.00 0.00 0.00 3.41
1860 2386 3.440173 AGTACGCCCATTTGATTTGAGTG 59.560 43.478 0.00 0.00 0.00 3.51
1861 2387 1.545582 ACGCCCATTTGATTTGAGTGG 59.454 47.619 0.00 0.00 0.00 4.00
1862 2388 1.545582 CGCCCATTTGATTTGAGTGGT 59.454 47.619 0.00 0.00 0.00 4.16
1863 2389 2.752354 CGCCCATTTGATTTGAGTGGTA 59.248 45.455 0.00 0.00 0.00 3.25
1864 2390 3.381272 CGCCCATTTGATTTGAGTGGTAT 59.619 43.478 0.00 0.00 0.00 2.73
1865 2391 4.578516 CGCCCATTTGATTTGAGTGGTATA 59.421 41.667 0.00 0.00 0.00 1.47
1866 2392 5.505654 CGCCCATTTGATTTGAGTGGTATAC 60.506 44.000 0.00 0.00 0.00 1.47
1867 2393 5.594317 GCCCATTTGATTTGAGTGGTATACT 59.406 40.000 2.25 0.00 44.02 2.12
1877 2403 1.208776 AGTGGTATACTCAAACCGGGC 59.791 52.381 6.32 0.00 38.70 6.13
1878 2404 0.542805 TGGTATACTCAAACCGGGCC 59.457 55.000 6.32 0.00 38.70 5.80
1879 2405 0.531311 GGTATACTCAAACCGGGCCG 60.531 60.000 21.46 21.46 0.00 6.13
1889 2415 4.446413 CCGGGCCGGTGTACTCAC 62.446 72.222 36.52 0.00 42.73 3.51
1908 2434 6.051717 ACTCACAATCCATGATAAGCTACAC 58.948 40.000 0.00 0.00 0.00 2.90
1926 2452 3.395639 ACACAATTTGTCCATCGTACGT 58.604 40.909 16.05 0.00 29.79 3.57
1927 2453 4.558178 ACACAATTTGTCCATCGTACGTA 58.442 39.130 16.05 2.34 29.79 3.57
1928 2454 4.386652 ACACAATTTGTCCATCGTACGTAC 59.613 41.667 15.90 15.90 29.79 3.67
1929 2455 4.624024 CACAATTTGTCCATCGTACGTACT 59.376 41.667 22.55 2.79 0.00 2.73
1930 2456 4.624024 ACAATTTGTCCATCGTACGTACTG 59.376 41.667 22.55 14.82 0.00 2.74
1931 2457 3.921119 TTTGTCCATCGTACGTACTGT 57.079 42.857 22.55 8.82 0.00 3.55
1939 2465 7.227314 TGTCCATCGTACGTACTGTATTATTCT 59.773 37.037 22.55 0.00 35.02 2.40
1977 2503 2.267227 GACGTCGATGCTGCGTGTTC 62.267 60.000 4.06 0.00 39.06 3.18
2007 2533 7.039784 TGCAGTCTGGTCTTTAAAATGCTTATT 60.040 33.333 1.14 0.00 32.53 1.40
2014 2540 9.748708 TGGTCTTTAAAATGCTTATTATCATGC 57.251 29.630 0.00 0.00 0.00 4.06
2019 2545 8.537049 TTAAAATGCTTATTATCATGCATGCC 57.463 30.769 22.25 0.00 44.15 4.40
2027 2553 1.624336 ATCATGCATGCCATACCACC 58.376 50.000 22.25 0.00 31.47 4.61
2037 2563 4.534647 TGCCATACCACCTGGAAATAAT 57.465 40.909 0.00 0.00 38.94 1.28
2038 2564 4.214310 TGCCATACCACCTGGAAATAATG 58.786 43.478 0.00 0.00 38.94 1.90
2039 2565 4.215109 GCCATACCACCTGGAAATAATGT 58.785 43.478 0.00 0.00 38.94 2.71
2040 2566 4.037923 GCCATACCACCTGGAAATAATGTG 59.962 45.833 0.00 0.00 38.94 3.21
2052 2600 6.865411 TGGAAATAATGTGTGATCAATGGTG 58.135 36.000 0.00 0.00 0.00 4.17
2078 2626 1.816074 TGTGCTCCCCGTTTGATTAC 58.184 50.000 0.00 0.00 0.00 1.89
2079 2627 1.349688 TGTGCTCCCCGTTTGATTACT 59.650 47.619 0.00 0.00 0.00 2.24
2080 2628 2.224670 TGTGCTCCCCGTTTGATTACTT 60.225 45.455 0.00 0.00 0.00 2.24
2081 2629 2.161609 GTGCTCCCCGTTTGATTACTTG 59.838 50.000 0.00 0.00 0.00 3.16
2082 2630 2.039216 TGCTCCCCGTTTGATTACTTGA 59.961 45.455 0.00 0.00 0.00 3.02
2083 2631 3.279434 GCTCCCCGTTTGATTACTTGAT 58.721 45.455 0.00 0.00 0.00 2.57
2084 2632 3.694566 GCTCCCCGTTTGATTACTTGATT 59.305 43.478 0.00 0.00 0.00 2.57
2085 2633 4.879545 GCTCCCCGTTTGATTACTTGATTA 59.120 41.667 0.00 0.00 0.00 1.75
2086 2634 5.007724 GCTCCCCGTTTGATTACTTGATTAG 59.992 44.000 0.00 0.00 0.00 1.73
2132 2681 8.610855 TGCGTACGAAAATGCTAGATATATAC 57.389 34.615 21.65 0.00 32.39 1.47
2133 2682 8.238631 TGCGTACGAAAATGCTAGATATATACA 58.761 33.333 21.65 0.00 32.39 2.29
2134 2683 9.234384 GCGTACGAAAATGCTAGATATATACAT 57.766 33.333 21.65 0.00 0.00 2.29
2171 4516 3.377172 CGGTTCACCACCCAATAATCTTC 59.623 47.826 0.00 0.00 43.83 2.87
2173 4518 4.258543 GTTCACCACCCAATAATCTTCGA 58.741 43.478 0.00 0.00 0.00 3.71
2192 4537 0.896923 AACATGTCGGCCAATGCATT 59.103 45.000 5.99 5.99 40.13 3.56
2193 4538 1.761449 ACATGTCGGCCAATGCATTA 58.239 45.000 12.53 0.00 40.13 1.90
2194 4539 2.309613 ACATGTCGGCCAATGCATTAT 58.690 42.857 12.53 0.00 40.13 1.28
2196 4541 0.385029 TGTCGGCCAATGCATTATGC 59.615 50.000 19.65 19.65 45.29 3.14
2206 4551 3.900446 GCATTATGCATCCCTTGGC 57.100 52.632 12.80 0.00 44.26 4.52
2207 4552 1.335145 GCATTATGCATCCCTTGGCT 58.665 50.000 12.80 0.00 44.26 4.75
2208 4553 1.690352 GCATTATGCATCCCTTGGCTT 59.310 47.619 12.80 0.00 44.26 4.35
2209 4554 2.547218 GCATTATGCATCCCTTGGCTTG 60.547 50.000 12.80 0.00 44.26 4.01
2210 4555 2.530460 TTATGCATCCCTTGGCTTGT 57.470 45.000 0.19 0.00 0.00 3.16
2211 4556 1.766494 TATGCATCCCTTGGCTTGTG 58.234 50.000 0.19 0.00 0.00 3.33
2212 4557 1.610554 ATGCATCCCTTGGCTTGTGC 61.611 55.000 0.00 0.00 38.76 4.57
2226 4571 4.292977 GCTTGTGCCCAATAATCTGTAC 57.707 45.455 0.00 0.00 0.00 2.90
2227 4572 3.694072 GCTTGTGCCCAATAATCTGTACA 59.306 43.478 0.00 0.00 0.00 2.90
2228 4573 4.157656 GCTTGTGCCCAATAATCTGTACAA 59.842 41.667 0.00 0.00 0.00 2.41
2229 4574 5.336372 GCTTGTGCCCAATAATCTGTACAAA 60.336 40.000 0.00 0.00 0.00 2.83
2230 4575 6.627953 GCTTGTGCCCAATAATCTGTACAAAT 60.628 38.462 0.00 0.00 0.00 2.32
2231 4576 6.206395 TGTGCCCAATAATCTGTACAAATG 57.794 37.500 0.00 0.00 0.00 2.32
2232 4577 5.714333 TGTGCCCAATAATCTGTACAAATGT 59.286 36.000 0.00 0.00 0.00 2.71
2233 4578 6.887002 TGTGCCCAATAATCTGTACAAATGTA 59.113 34.615 0.00 0.00 0.00 2.29
2234 4579 7.559533 TGTGCCCAATAATCTGTACAAATGTAT 59.440 33.333 0.00 0.00 32.54 2.29
2235 4580 8.413229 GTGCCCAATAATCTGTACAAATGTATT 58.587 33.333 0.00 0.00 32.54 1.89
2236 4581 8.412456 TGCCCAATAATCTGTACAAATGTATTG 58.588 33.333 15.04 15.04 32.54 1.90
2237 4582 8.629158 GCCCAATAATCTGTACAAATGTATTGA 58.371 33.333 19.71 5.21 31.95 2.57
2242 4587 7.587037 AATCTGTACAAATGTATTGATGGGG 57.413 36.000 0.00 0.00 32.54 4.96
2243 4588 6.320434 TCTGTACAAATGTATTGATGGGGA 57.680 37.500 0.00 0.00 32.54 4.81
2244 4589 6.119536 TCTGTACAAATGTATTGATGGGGAC 58.880 40.000 0.00 0.00 32.54 4.46
2245 4590 5.821097 TGTACAAATGTATTGATGGGGACA 58.179 37.500 0.00 0.00 37.56 4.02
2246 4591 5.650266 TGTACAAATGTATTGATGGGGACAC 59.350 40.000 0.00 0.00 36.50 3.67
2247 4592 5.220777 GTACAAATGTATTGATGGGGACACG 60.221 44.000 0.00 0.00 36.50 4.49
2248 4593 7.569707 GTACAAATGTATTGATGGGGACACGT 61.570 42.308 0.00 0.00 36.50 4.49
2249 4594 9.471701 GTACAAATGTATTGATGGGGACACGTG 62.472 44.444 15.48 15.48 36.50 4.49
2262 4607 3.363351 ACGTGGACGGGAAGAGTC 58.637 61.111 3.93 0.00 44.95 3.36
2270 4615 3.130227 GGGAAGAGTCCGATCGGG 58.870 66.667 32.79 15.22 46.04 5.14
2271 4616 1.455217 GGGAAGAGTCCGATCGGGA 60.455 63.158 32.79 17.32 46.04 5.14
2279 4624 3.627645 TCCGATCGGGACTAGCTAG 57.372 57.895 32.79 19.44 40.94 3.42
2280 4625 0.605860 TCCGATCGGGACTAGCTAGC 60.606 60.000 32.79 6.62 40.94 3.42
2281 4626 1.587933 CCGATCGGGACTAGCTAGCC 61.588 65.000 26.95 20.36 38.47 3.93
2282 4627 1.877367 GATCGGGACTAGCTAGCCG 59.123 63.158 25.47 25.47 32.48 5.52
2283 4628 0.890090 GATCGGGACTAGCTAGCCGT 60.890 60.000 28.16 19.75 32.86 5.68
2284 4629 0.890090 ATCGGGACTAGCTAGCCGTC 60.890 60.000 28.16 20.72 32.86 4.79
2285 4630 2.894565 CGGGACTAGCTAGCCGTCG 61.895 68.421 23.96 18.53 0.00 5.12
2286 4631 1.525535 GGGACTAGCTAGCCGTCGA 60.526 63.158 20.91 0.00 0.00 4.20
2287 4632 1.648174 GGACTAGCTAGCCGTCGAC 59.352 63.158 20.91 5.18 0.00 4.20
2288 4633 1.094073 GGACTAGCTAGCCGTCGACA 61.094 60.000 20.91 0.00 0.00 4.35
2289 4634 0.027848 GACTAGCTAGCCGTCGACAC 59.972 60.000 20.91 6.93 0.00 3.67
2290 4635 1.355916 CTAGCTAGCCGTCGACACC 59.644 63.158 17.16 5.31 0.00 4.16
2291 4636 1.374343 CTAGCTAGCCGTCGACACCA 61.374 60.000 17.16 0.00 0.00 4.17
2292 4637 1.374343 TAGCTAGCCGTCGACACCAG 61.374 60.000 17.16 6.51 0.00 4.00
2293 4638 2.202623 CTAGCCGTCGACACCAGC 60.203 66.667 17.16 12.15 0.00 4.85
2294 4639 2.675423 TAGCCGTCGACACCAGCT 60.675 61.111 17.16 18.39 34.01 4.24
2295 4640 2.874010 CTAGCCGTCGACACCAGCTG 62.874 65.000 22.36 6.78 32.28 4.24
2306 4651 2.598394 CCAGCTGGTTGTGGGTGG 60.598 66.667 25.53 0.00 43.18 4.61
2307 4652 2.598394 CAGCTGGTTGTGGGTGGG 60.598 66.667 5.57 0.00 0.00 4.61
2308 4653 3.103213 AGCTGGTTGTGGGTGGGT 61.103 61.111 0.00 0.00 0.00 4.51
2309 4654 2.912025 GCTGGTTGTGGGTGGGTG 60.912 66.667 0.00 0.00 0.00 4.61
2310 4655 2.923035 CTGGTTGTGGGTGGGTGA 59.077 61.111 0.00 0.00 0.00 4.02
2311 4656 1.228793 CTGGTTGTGGGTGGGTGAA 59.771 57.895 0.00 0.00 0.00 3.18
2312 4657 0.178964 CTGGTTGTGGGTGGGTGAAT 60.179 55.000 0.00 0.00 0.00 2.57
2313 4658 0.178975 TGGTTGTGGGTGGGTGAATC 60.179 55.000 0.00 0.00 0.00 2.52
2314 4659 0.178975 GGTTGTGGGTGGGTGAATCA 60.179 55.000 0.00 0.00 0.00 2.57
2315 4660 1.247567 GTTGTGGGTGGGTGAATCAG 58.752 55.000 0.00 0.00 0.00 2.90
2316 4661 0.539438 TTGTGGGTGGGTGAATCAGC 60.539 55.000 3.49 3.49 0.00 4.26
2317 4662 2.040544 GTGGGTGGGTGAATCAGCG 61.041 63.158 6.35 0.00 33.86 5.18
2318 4663 2.438434 GGGTGGGTGAATCAGCGG 60.438 66.667 6.35 0.00 33.86 5.52
2319 4664 2.351276 GGTGGGTGAATCAGCGGT 59.649 61.111 6.35 0.00 32.08 5.68
2320 4665 1.303317 GGTGGGTGAATCAGCGGTT 60.303 57.895 6.35 0.00 32.08 4.44
2321 4666 1.586154 GGTGGGTGAATCAGCGGTTG 61.586 60.000 6.35 0.00 32.08 3.77
2322 4667 1.971167 TGGGTGAATCAGCGGTTGC 60.971 57.895 6.35 0.00 43.24 4.17
2323 4668 2.700773 GGGTGAATCAGCGGTTGCC 61.701 63.158 6.35 0.00 44.31 4.52
2324 4669 1.675641 GGTGAATCAGCGGTTGCCT 60.676 57.895 0.00 0.00 44.31 4.75
2325 4670 1.244019 GGTGAATCAGCGGTTGCCTT 61.244 55.000 0.00 0.00 44.31 4.35
2326 4671 0.169009 GTGAATCAGCGGTTGCCTTC 59.831 55.000 0.00 0.00 44.31 3.46
2327 4672 0.250684 TGAATCAGCGGTTGCCTTCA 60.251 50.000 5.87 5.87 44.31 3.02
2328 4673 0.169009 GAATCAGCGGTTGCCTTCAC 59.831 55.000 0.00 0.00 44.31 3.18
2329 4674 1.244019 AATCAGCGGTTGCCTTCACC 61.244 55.000 0.00 0.00 44.31 4.02
2333 4678 2.943653 CGGTTGCCTTCACCGTTC 59.056 61.111 3.27 0.00 41.62 3.95
2334 4679 1.890041 CGGTTGCCTTCACCGTTCA 60.890 57.895 3.27 0.00 41.62 3.18
2335 4680 1.234615 CGGTTGCCTTCACCGTTCAT 61.235 55.000 3.27 0.00 41.62 2.57
2336 4681 0.521735 GGTTGCCTTCACCGTTCATC 59.478 55.000 0.00 0.00 0.00 2.92
2337 4682 0.521735 GTTGCCTTCACCGTTCATCC 59.478 55.000 0.00 0.00 0.00 3.51
2338 4683 0.400213 TTGCCTTCACCGTTCATCCT 59.600 50.000 0.00 0.00 0.00 3.24
2339 4684 0.036388 TGCCTTCACCGTTCATCCTC 60.036 55.000 0.00 0.00 0.00 3.71
2340 4685 0.036388 GCCTTCACCGTTCATCCTCA 60.036 55.000 0.00 0.00 0.00 3.86
2341 4686 1.407437 GCCTTCACCGTTCATCCTCAT 60.407 52.381 0.00 0.00 0.00 2.90
2342 4687 2.941415 GCCTTCACCGTTCATCCTCATT 60.941 50.000 0.00 0.00 0.00 2.57
2343 4688 2.679837 CCTTCACCGTTCATCCTCATTG 59.320 50.000 0.00 0.00 0.00 2.82
2344 4689 3.338249 CTTCACCGTTCATCCTCATTGT 58.662 45.455 0.00 0.00 0.00 2.71
2345 4690 2.972625 TCACCGTTCATCCTCATTGTC 58.027 47.619 0.00 0.00 0.00 3.18
2346 4691 2.301583 TCACCGTTCATCCTCATTGTCA 59.698 45.455 0.00 0.00 0.00 3.58
2347 4692 3.073678 CACCGTTCATCCTCATTGTCAA 58.926 45.455 0.00 0.00 0.00 3.18
2348 4693 3.074412 ACCGTTCATCCTCATTGTCAAC 58.926 45.455 0.00 0.00 0.00 3.18
2349 4694 2.094258 CCGTTCATCCTCATTGTCAACG 59.906 50.000 0.00 0.00 35.94 4.10
2350 4695 2.736721 CGTTCATCCTCATTGTCAACGT 59.263 45.455 0.00 0.00 32.49 3.99
2351 4696 3.186409 CGTTCATCCTCATTGTCAACGTT 59.814 43.478 0.00 0.00 32.49 3.99
2352 4697 4.319477 CGTTCATCCTCATTGTCAACGTTT 60.319 41.667 0.00 0.00 32.49 3.60
2353 4698 5.107259 CGTTCATCCTCATTGTCAACGTTTA 60.107 40.000 0.00 0.00 32.49 2.01
2354 4699 6.565060 CGTTCATCCTCATTGTCAACGTTTAA 60.565 38.462 0.00 0.00 32.49 1.52
2355 4700 7.305474 GTTCATCCTCATTGTCAACGTTTAAT 58.695 34.615 0.00 0.00 0.00 1.40
2356 4701 7.072177 TCATCCTCATTGTCAACGTTTAATC 57.928 36.000 0.00 0.00 0.00 1.75
2357 4702 5.873179 TCCTCATTGTCAACGTTTAATCC 57.127 39.130 0.00 0.00 0.00 3.01
2358 4703 4.390603 TCCTCATTGTCAACGTTTAATCCG 59.609 41.667 0.00 0.00 0.00 4.18
2359 4704 4.390603 CCTCATTGTCAACGTTTAATCCGA 59.609 41.667 0.00 0.00 0.00 4.55
2360 4705 5.106869 CCTCATTGTCAACGTTTAATCCGAA 60.107 40.000 0.00 0.00 0.00 4.30
2361 4706 5.922546 TCATTGTCAACGTTTAATCCGAAG 58.077 37.500 0.00 0.00 0.00 3.79
2362 4707 5.697178 TCATTGTCAACGTTTAATCCGAAGA 59.303 36.000 0.00 0.00 0.00 2.87
2363 4708 5.987777 TTGTCAACGTTTAATCCGAAGAA 57.012 34.783 0.00 0.00 0.00 2.52
2364 4709 5.987777 TGTCAACGTTTAATCCGAAGAAA 57.012 34.783 0.00 0.00 0.00 2.52
2365 4710 6.360844 TGTCAACGTTTAATCCGAAGAAAA 57.639 33.333 0.00 0.00 0.00 2.29
2366 4711 6.193761 TGTCAACGTTTAATCCGAAGAAAAC 58.806 36.000 0.00 0.00 0.00 2.43
2367 4712 6.037391 TGTCAACGTTTAATCCGAAGAAAACT 59.963 34.615 0.00 0.00 0.00 2.66
2368 4713 6.356190 GTCAACGTTTAATCCGAAGAAAACTG 59.644 38.462 0.00 0.00 0.00 3.16
2369 4714 5.352643 ACGTTTAATCCGAAGAAAACTGG 57.647 39.130 2.47 0.00 0.00 4.00
2370 4715 5.058490 ACGTTTAATCCGAAGAAAACTGGA 58.942 37.500 2.47 0.00 34.45 3.86
2371 4716 5.178809 ACGTTTAATCCGAAGAAAACTGGAG 59.821 40.000 2.47 0.00 33.21 3.86
2372 4717 5.407387 CGTTTAATCCGAAGAAAACTGGAGA 59.593 40.000 0.00 0.00 33.21 3.71
2373 4718 6.073440 CGTTTAATCCGAAGAAAACTGGAGAA 60.073 38.462 0.00 0.00 33.21 2.87
2374 4719 7.519328 CGTTTAATCCGAAGAAAACTGGAGAAA 60.519 37.037 0.00 0.00 33.21 2.52
2375 4720 5.948992 AATCCGAAGAAAACTGGAGAAAG 57.051 39.130 0.00 0.00 33.21 2.62
2376 4721 4.682778 TCCGAAGAAAACTGGAGAAAGA 57.317 40.909 0.00 0.00 0.00 2.52
2377 4722 5.031066 TCCGAAGAAAACTGGAGAAAGAA 57.969 39.130 0.00 0.00 0.00 2.52
2378 4723 5.057149 TCCGAAGAAAACTGGAGAAAGAAG 58.943 41.667 0.00 0.00 0.00 2.85
2379 4724 5.057149 CCGAAGAAAACTGGAGAAAGAAGA 58.943 41.667 0.00 0.00 0.00 2.87
2380 4725 5.703130 CCGAAGAAAACTGGAGAAAGAAGAT 59.297 40.000 0.00 0.00 0.00 2.40
2381 4726 6.348050 CCGAAGAAAACTGGAGAAAGAAGATG 60.348 42.308 0.00 0.00 0.00 2.90
2382 4727 6.203723 CGAAGAAAACTGGAGAAAGAAGATGT 59.796 38.462 0.00 0.00 0.00 3.06
2383 4728 6.874288 AGAAAACTGGAGAAAGAAGATGTG 57.126 37.500 0.00 0.00 0.00 3.21
2384 4729 6.360618 AGAAAACTGGAGAAAGAAGATGTGT 58.639 36.000 0.00 0.00 0.00 3.72
2385 4730 6.261826 AGAAAACTGGAGAAAGAAGATGTGTG 59.738 38.462 0.00 0.00 0.00 3.82
2386 4731 4.013267 ACTGGAGAAAGAAGATGTGTGG 57.987 45.455 0.00 0.00 0.00 4.17
2387 4732 2.746362 CTGGAGAAAGAAGATGTGTGGC 59.254 50.000 0.00 0.00 0.00 5.01
2388 4733 1.734465 GGAGAAAGAAGATGTGTGGCG 59.266 52.381 0.00 0.00 0.00 5.69
2389 4734 1.129437 GAGAAAGAAGATGTGTGGCGC 59.871 52.381 0.00 0.00 0.00 6.53
2390 4735 0.169009 GAAAGAAGATGTGTGGCGCC 59.831 55.000 22.73 22.73 0.00 6.53
2391 4736 0.537143 AAAGAAGATGTGTGGCGCCA 60.537 50.000 29.03 29.03 0.00 5.69
2392 4737 1.237285 AAGAAGATGTGTGGCGCCAC 61.237 55.000 45.20 45.20 46.33 5.01
2400 4745 3.723348 GTGGCGCCACGGTTTCTC 61.723 66.667 41.21 18.68 37.19 2.87
2403 4748 3.723348 GCGCCACGGTTTCTCCAC 61.723 66.667 0.00 0.00 35.57 4.02
2404 4749 3.411351 CGCCACGGTTTCTCCACG 61.411 66.667 0.00 0.00 35.57 4.94
2405 4750 2.280592 GCCACGGTTTCTCCACGT 60.281 61.111 0.00 0.00 42.17 4.49
2406 4751 1.005867 GCCACGGTTTCTCCACGTA 60.006 57.895 0.00 0.00 39.02 3.57
2407 4752 1.012486 GCCACGGTTTCTCCACGTAG 61.012 60.000 0.00 0.00 39.02 3.51
2408 4753 0.599558 CCACGGTTTCTCCACGTAGA 59.400 55.000 0.00 0.00 39.02 2.59
2409 4754 1.402456 CCACGGTTTCTCCACGTAGAG 60.402 57.143 4.45 4.45 39.02 2.43
2410 4755 1.268899 CACGGTTTCTCCACGTAGAGT 59.731 52.381 10.83 0.00 39.02 3.24
2421 4766 1.912110 CACGTAGAGTGCGACTTTAGC 59.088 52.381 0.00 0.00 44.72 3.09
2422 4767 1.135460 ACGTAGAGTGCGACTTTAGCC 60.135 52.381 0.00 0.00 0.00 3.93
2423 4768 1.546834 GTAGAGTGCGACTTTAGCCG 58.453 55.000 0.00 0.00 0.00 5.52
2424 4769 0.454600 TAGAGTGCGACTTTAGCCGG 59.545 55.000 0.00 0.00 0.00 6.13
2425 4770 1.080025 GAGTGCGACTTTAGCCGGT 60.080 57.895 1.90 0.00 0.00 5.28
2426 4771 1.352156 GAGTGCGACTTTAGCCGGTG 61.352 60.000 1.90 0.00 0.00 4.94
2427 4772 2.047655 TGCGACTTTAGCCGGTGG 60.048 61.111 1.90 0.00 0.00 4.61
2428 4773 2.263540 GCGACTTTAGCCGGTGGA 59.736 61.111 1.90 0.00 0.00 4.02
2429 4774 1.153429 GCGACTTTAGCCGGTGGAT 60.153 57.895 1.90 0.00 0.00 3.41
2430 4775 1.152383 GCGACTTTAGCCGGTGGATC 61.152 60.000 1.90 0.00 0.00 3.36
2431 4776 0.870307 CGACTTTAGCCGGTGGATCG 60.870 60.000 1.90 1.76 0.00 3.69
2432 4777 0.458669 GACTTTAGCCGGTGGATCGA 59.541 55.000 1.90 0.00 0.00 3.59
2433 4778 0.899720 ACTTTAGCCGGTGGATCGAA 59.100 50.000 1.90 0.00 0.00 3.71
2434 4779 1.287425 CTTTAGCCGGTGGATCGAAC 58.713 55.000 1.90 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.072505 GGAGGTTTCCGGCTCAACA 59.927 57.895 0.00 0.00 32.79 3.33
18 19 3.702048 CGGGAGGTTTCCGGCTCA 61.702 66.667 0.00 0.00 45.04 4.26
99 100 3.201266 TGTTTAGTTTGGAGGTGGACAGT 59.799 43.478 0.00 0.00 0.00 3.55
134 135 6.526674 ACGGTCAATTTTATCGATCAAAAAGC 59.473 34.615 8.71 6.69 0.00 3.51
203 205 0.462047 CGCCCGAACTAGAATTGCCT 60.462 55.000 0.00 0.00 0.00 4.75
265 267 0.750850 TGAAGCGTCCCTATAGGCAC 59.249 55.000 13.85 8.16 34.51 5.01
300 302 0.829182 ACCAAAAGAAGGCCCTGCAG 60.829 55.000 6.78 6.78 0.00 4.41
380 382 3.141272 ACCTAGACCCCCATTTTTGAACA 59.859 43.478 0.00 0.00 0.00 3.18
386 388 3.011369 GGAGAAACCTAGACCCCCATTTT 59.989 47.826 0.00 0.00 35.41 1.82
481 483 9.914834 ATATTTGTTAACCAAGTAGGATGCTTA 57.085 29.630 2.48 0.00 39.72 3.09
482 484 8.686334 CATATTTGTTAACCAAGTAGGATGCTT 58.314 33.333 2.48 0.00 43.67 3.91
547 549 2.320587 GCCACACTGGAGAAGCGTG 61.321 63.158 0.00 0.00 40.96 5.34
664 674 0.811915 CCGAGAGTAGTCTGGGTGTG 59.188 60.000 18.11 0.00 42.41 3.82
760 771 2.747446 GAGGCGCAAGATCAAGGTTTAA 59.253 45.455 10.83 0.00 43.02 1.52
768 779 0.464036 ATAACCGAGGCGCAAGATCA 59.536 50.000 10.83 0.00 43.02 2.92
853 864 4.581868 CAAACCCTTTTATCGTCCACCTA 58.418 43.478 0.00 0.00 0.00 3.08
858 869 2.163613 CCTGCAAACCCTTTTATCGTCC 59.836 50.000 0.00 0.00 0.00 4.79
922 933 1.001974 TGTCGGGTGTTCATTCCAGAG 59.998 52.381 0.00 0.00 0.00 3.35
994 1005 2.290832 TGTGAGCCAGCCACATGAATAA 60.291 45.455 0.00 0.00 39.36 1.40
1129 1140 1.901948 CCCATAGCGGCCGTAGAGA 60.902 63.158 28.70 8.06 0.00 3.10
1179 1190 4.357142 GCCAGATATCTGCAATGTTGTTG 58.643 43.478 24.81 9.91 42.47 3.33
1248 1259 2.801342 GCGCTTCCATGTGTTCCAAAAA 60.801 45.455 0.00 0.00 0.00 1.94
1293 1304 0.678048 GGTGAATGTGCAGGGTCTCC 60.678 60.000 0.00 0.00 0.00 3.71
1417 1429 0.650512 CGTTACAATCTCGCGGCAAT 59.349 50.000 6.13 0.00 0.00 3.56
1462 1552 1.222567 GAGAGGGGAGAGAGAGAGGT 58.777 60.000 0.00 0.00 0.00 3.85
1468 1558 1.671901 GGTTGCGAGAGGGGAGAGAG 61.672 65.000 0.00 0.00 0.00 3.20
1469 1559 1.682684 GGTTGCGAGAGGGGAGAGA 60.683 63.158 0.00 0.00 0.00 3.10
1470 1560 2.726351 GGGTTGCGAGAGGGGAGAG 61.726 68.421 0.00 0.00 0.00 3.20
1482 1572 1.673337 GAGGTTACACGGGGGTTGC 60.673 63.158 0.00 0.00 0.00 4.17
1484 1574 1.151965 AGGAGGTTACACGGGGGTT 60.152 57.895 0.00 0.00 0.00 4.11
1491 1581 5.548406 AGATGTTTACACAGGAGGTTACAC 58.452 41.667 0.00 0.00 35.94 2.90
1574 1867 2.943033 CACACCCGGATACTTCAAATCC 59.057 50.000 0.73 0.00 39.71 3.01
1575 1868 3.869065 TCACACCCGGATACTTCAAATC 58.131 45.455 0.73 0.00 0.00 2.17
1578 1871 3.773418 TTTCACACCCGGATACTTCAA 57.227 42.857 0.73 0.00 0.00 2.69
1579 1872 3.992943 ATTTCACACCCGGATACTTCA 57.007 42.857 0.73 0.00 0.00 3.02
1582 1875 5.367945 AATGTATTTCACACCCGGATACT 57.632 39.130 0.73 0.00 40.86 2.12
1583 1876 7.739498 AATAATGTATTTCACACCCGGATAC 57.261 36.000 0.73 1.10 40.86 2.24
1584 1877 9.496873 CTAAATAATGTATTTCACACCCGGATA 57.503 33.333 0.73 0.00 40.86 2.59
1585 1878 7.996644 ACTAAATAATGTATTTCACACCCGGAT 59.003 33.333 0.73 0.00 40.86 4.18
1586 1879 7.281324 CACTAAATAATGTATTTCACACCCGGA 59.719 37.037 0.73 0.00 40.86 5.14
1587 1880 7.066525 ACACTAAATAATGTATTTCACACCCGG 59.933 37.037 0.00 0.00 40.86 5.73
1588 1881 7.981142 ACACTAAATAATGTATTTCACACCCG 58.019 34.615 0.00 0.00 40.86 5.28
1589 1882 9.783256 GAACACTAAATAATGTATTTCACACCC 57.217 33.333 0.00 0.00 40.86 4.61
1601 1894 7.998767 CGTGCGAGATTAGAACACTAAATAATG 59.001 37.037 0.00 0.00 31.27 1.90
1602 1895 7.169308 CCGTGCGAGATTAGAACACTAAATAAT 59.831 37.037 0.00 0.00 31.27 1.28
1604 1897 5.975344 CCGTGCGAGATTAGAACACTAAATA 59.025 40.000 0.00 0.00 31.27 1.40
1606 1899 4.171005 CCGTGCGAGATTAGAACACTAAA 58.829 43.478 0.00 0.00 31.27 1.85
1607 1900 3.766151 CCGTGCGAGATTAGAACACTAA 58.234 45.455 0.00 0.00 0.00 2.24
1609 1902 1.736032 GCCGTGCGAGATTAGAACACT 60.736 52.381 0.00 0.00 0.00 3.55
1610 1903 0.645868 GCCGTGCGAGATTAGAACAC 59.354 55.000 0.00 0.00 0.00 3.32
1619 1912 1.816863 AAGGAAAGAGCCGTGCGAGA 61.817 55.000 0.00 0.00 0.00 4.04
1625 1918 2.032924 CGTTTCAAAAGGAAAGAGCCGT 59.967 45.455 0.00 0.00 45.76 5.68
1660 1953 2.095567 CACTGGCTTTTCTGTTGATCGG 60.096 50.000 0.00 0.00 0.00 4.18
1684 1977 2.739704 CGAATGGCTCAAGCGCGAA 61.740 57.895 12.10 0.00 43.26 4.70
1685 1978 3.188100 CGAATGGCTCAAGCGCGA 61.188 61.111 12.10 0.00 43.26 5.87
1686 1979 3.147889 CTCGAATGGCTCAAGCGCG 62.148 63.158 0.00 0.00 43.26 6.86
1687 1980 1.760268 CTCTCGAATGGCTCAAGCGC 61.760 60.000 0.00 0.00 43.26 5.92
1696 1989 0.460987 GAGGCCACACTCTCGAATGG 60.461 60.000 5.01 0.00 34.65 3.16
1711 2004 1.946650 CGAGAAAGCGATCCGAGGC 60.947 63.158 0.00 0.00 0.00 4.70
1715 2008 1.518929 GACATTCGAGAAAGCGATCCG 59.481 52.381 0.00 0.00 40.35 4.18
1767 2281 2.106684 GGTTCTGGAGAAGGTTTCCACT 59.893 50.000 0.00 0.00 39.74 4.00
1768 2282 2.106684 AGGTTCTGGAGAAGGTTTCCAC 59.893 50.000 0.00 0.00 39.74 4.02
1769 2283 2.418669 AGGTTCTGGAGAAGGTTTCCA 58.581 47.619 0.00 0.00 42.30 3.53
1770 2284 3.073209 AGAAGGTTCTGGAGAAGGTTTCC 59.927 47.826 0.00 0.00 35.89 3.13
1771 2285 4.320023 GAGAAGGTTCTGGAGAAGGTTTC 58.680 47.826 0.00 0.00 37.73 2.78
1772 2286 3.073209 GGAGAAGGTTCTGGAGAAGGTTT 59.927 47.826 0.00 0.00 37.73 3.27
1773 2287 2.640332 GGAGAAGGTTCTGGAGAAGGTT 59.360 50.000 0.00 0.00 37.73 3.50
1774 2288 2.261729 GGAGAAGGTTCTGGAGAAGGT 58.738 52.381 0.00 0.00 37.73 3.50
1775 2289 2.235898 CTGGAGAAGGTTCTGGAGAAGG 59.764 54.545 0.00 0.00 37.73 3.46
1776 2290 3.169099 TCTGGAGAAGGTTCTGGAGAAG 58.831 50.000 0.00 0.00 37.73 2.85
1777 2291 3.260269 TCTGGAGAAGGTTCTGGAGAA 57.740 47.619 0.00 0.00 37.73 2.87
1778 2292 3.481559 ATCTGGAGAAGGTTCTGGAGA 57.518 47.619 0.00 0.00 37.73 3.71
1828 2354 2.934886 TGGGCGTACTTTAACTGGTT 57.065 45.000 0.00 0.00 0.00 3.67
1830 2356 3.754323 TCAAATGGGCGTACTTTAACTGG 59.246 43.478 0.00 0.00 0.00 4.00
1831 2357 5.560966 ATCAAATGGGCGTACTTTAACTG 57.439 39.130 0.00 0.00 0.00 3.16
1833 2359 6.383415 TCAAATCAAATGGGCGTACTTTAAC 58.617 36.000 0.00 0.00 0.00 2.01
1836 2362 4.522789 ACTCAAATCAAATGGGCGTACTTT 59.477 37.500 0.00 0.00 0.00 2.66
1843 2369 5.594317 AGTATACCACTCAAATCAAATGGGC 59.406 40.000 0.00 0.00 34.56 5.36
1857 2383 1.208776 GCCCGGTTTGAGTATACCACT 59.791 52.381 0.00 0.00 41.47 4.00
1858 2384 1.660167 GCCCGGTTTGAGTATACCAC 58.340 55.000 0.00 0.00 33.94 4.16
1859 2385 0.542805 GGCCCGGTTTGAGTATACCA 59.457 55.000 0.00 0.00 33.94 3.25
1860 2386 0.531311 CGGCCCGGTTTGAGTATACC 60.531 60.000 0.00 0.00 0.00 2.73
1861 2387 0.531311 CCGGCCCGGTTTGAGTATAC 60.531 60.000 15.86 0.00 42.73 1.47
1862 2388 1.824658 CCGGCCCGGTTTGAGTATA 59.175 57.895 15.86 0.00 42.73 1.47
1863 2389 2.587889 CCGGCCCGGTTTGAGTAT 59.412 61.111 15.86 0.00 42.73 2.12
1873 2399 2.515996 ATTGTGAGTACACCGGCCCG 62.516 60.000 0.00 0.00 45.40 6.13
1874 2400 0.743345 GATTGTGAGTACACCGGCCC 60.743 60.000 0.00 0.00 45.40 5.80
1875 2401 0.743345 GGATTGTGAGTACACCGGCC 60.743 60.000 0.00 0.00 45.40 6.13
1876 2402 0.036765 TGGATTGTGAGTACACCGGC 60.037 55.000 0.00 0.00 45.40 6.13
1877 2403 2.093711 TCATGGATTGTGAGTACACCGG 60.094 50.000 0.00 0.00 45.40 5.28
1878 2404 3.245518 TCATGGATTGTGAGTACACCG 57.754 47.619 0.00 0.00 45.40 4.94
1879 2405 5.237344 GCTTATCATGGATTGTGAGTACACC 59.763 44.000 0.00 0.00 45.40 4.16
1880 2406 6.051717 AGCTTATCATGGATTGTGAGTACAC 58.948 40.000 0.00 0.00 46.09 2.90
1881 2407 6.239217 AGCTTATCATGGATTGTGAGTACA 57.761 37.500 0.00 0.00 34.31 2.90
1882 2408 7.169982 GTGTAGCTTATCATGGATTGTGAGTAC 59.830 40.741 0.00 0.00 0.00 2.73
1889 2415 8.192774 ACAAATTGTGTAGCTTATCATGGATTG 58.807 33.333 0.00 0.00 39.29 2.67
1908 2434 4.624024 ACAGTACGTACGATGGACAAATTG 59.376 41.667 24.41 10.25 0.00 2.32
1927 2453 9.787435 TGGTTGTAAAGTTGAGAATAATACAGT 57.213 29.630 0.00 0.00 0.00 3.55
1929 2455 8.714179 CGTGGTTGTAAAGTTGAGAATAATACA 58.286 33.333 0.00 0.00 0.00 2.29
1930 2456 7.691050 GCGTGGTTGTAAAGTTGAGAATAATAC 59.309 37.037 0.00 0.00 0.00 1.89
1931 2457 7.148373 GGCGTGGTTGTAAAGTTGAGAATAATA 60.148 37.037 0.00 0.00 0.00 0.98
1939 2465 0.938713 CGGCGTGGTTGTAAAGTTGA 59.061 50.000 0.00 0.00 0.00 3.18
1972 2498 1.160329 ACCAGACTGCAAGCGAACAC 61.160 55.000 0.00 0.00 37.60 3.32
1977 2503 1.795768 TAAAGACCAGACTGCAAGCG 58.204 50.000 0.00 0.00 37.60 4.68
2007 2533 2.376181 AGGTGGTATGGCATGCATGATA 59.624 45.455 30.64 16.45 0.00 2.15
2010 2536 0.671796 CAGGTGGTATGGCATGCATG 59.328 55.000 22.70 22.70 0.00 4.06
2011 2537 0.468585 CCAGGTGGTATGGCATGCAT 60.469 55.000 21.36 13.33 0.00 3.96
2013 2539 0.395586 TTCCAGGTGGTATGGCATGC 60.396 55.000 9.90 9.90 37.76 4.06
2014 2540 2.142356 TTTCCAGGTGGTATGGCATG 57.858 50.000 10.98 0.00 37.76 4.06
2016 2542 4.214310 CATTATTTCCAGGTGGTATGGCA 58.786 43.478 0.00 0.00 37.76 4.92
2017 2543 4.037923 CACATTATTTCCAGGTGGTATGGC 59.962 45.833 0.00 0.00 37.76 4.40
2018 2544 5.067674 CACACATTATTTCCAGGTGGTATGG 59.932 44.000 0.00 0.00 39.33 2.74
2019 2545 5.885352 TCACACATTATTTCCAGGTGGTATG 59.115 40.000 0.00 0.00 36.34 2.39
2027 2553 6.976349 CACCATTGATCACACATTATTTCCAG 59.024 38.462 0.00 0.00 0.00 3.86
2037 2563 0.883153 GCAGCACCATTGATCACACA 59.117 50.000 0.00 0.00 0.00 3.72
2038 2564 0.171903 GGCAGCACCATTGATCACAC 59.828 55.000 0.00 0.00 38.86 3.82
2039 2565 0.251253 TGGCAGCACCATTGATCACA 60.251 50.000 0.00 0.00 46.36 3.58
2040 2566 2.570365 TGGCAGCACCATTGATCAC 58.430 52.632 0.00 0.00 46.36 3.06
2103 2651 1.790755 AGCATTTTCGTACGCAGTGA 58.209 45.000 11.24 0.00 45.73 3.41
2104 2652 2.921121 TCTAGCATTTTCGTACGCAGTG 59.079 45.455 11.24 7.83 45.73 3.66
2106 2654 7.742019 ATATATCTAGCATTTTCGTACGCAG 57.258 36.000 11.24 0.00 0.00 5.18
2107 2655 8.238631 TGTATATATCTAGCATTTTCGTACGCA 58.761 33.333 11.24 0.00 0.00 5.24
2138 2687 1.279840 GTGAACCGTGAGCTGTTGC 59.720 57.895 0.00 0.00 40.05 4.17
2140 2689 0.814010 GTGGTGAACCGTGAGCTGTT 60.814 55.000 0.00 0.00 39.43 3.16
2173 4518 0.896923 AATGCATTGGCCGACATGTT 59.103 45.000 12.09 0.00 40.13 2.71
2192 4537 1.766494 CACAAGCCAAGGGATGCATA 58.234 50.000 0.00 0.00 0.00 3.14
2193 4538 1.610554 GCACAAGCCAAGGGATGCAT 61.611 55.000 0.00 0.00 33.27 3.96
2194 4539 2.277591 GCACAAGCCAAGGGATGCA 61.278 57.895 0.00 0.00 33.27 3.96
2205 4550 3.694072 TGTACAGATTATTGGGCACAAGC 59.306 43.478 7.78 0.00 40.49 4.01
2206 4551 5.895636 TTGTACAGATTATTGGGCACAAG 57.104 39.130 7.78 0.00 40.49 3.16
2207 4552 6.210385 ACATTTGTACAGATTATTGGGCACAA 59.790 34.615 2.55 2.55 41.59 3.33
2208 4553 5.714333 ACATTTGTACAGATTATTGGGCACA 59.286 36.000 0.00 0.00 0.00 4.57
2209 4554 6.207691 ACATTTGTACAGATTATTGGGCAC 57.792 37.500 0.00 0.00 0.00 5.01
2210 4555 8.412456 CAATACATTTGTACAGATTATTGGGCA 58.588 33.333 19.75 0.00 32.72 5.36
2211 4556 8.629158 TCAATACATTTGTACAGATTATTGGGC 58.371 33.333 22.96 0.00 32.72 5.36
2216 4561 9.300681 CCCCATCAATACATTTGTACAGATTAT 57.699 33.333 0.00 0.00 32.72 1.28
2217 4562 8.498575 TCCCCATCAATACATTTGTACAGATTA 58.501 33.333 0.00 0.00 32.72 1.75
2218 4563 7.285401 GTCCCCATCAATACATTTGTACAGATT 59.715 37.037 0.00 0.00 32.72 2.40
2219 4564 6.772716 GTCCCCATCAATACATTTGTACAGAT 59.227 38.462 0.00 0.00 32.72 2.90
2220 4565 6.119536 GTCCCCATCAATACATTTGTACAGA 58.880 40.000 0.00 0.00 32.72 3.41
2221 4566 5.885352 TGTCCCCATCAATACATTTGTACAG 59.115 40.000 0.00 0.00 32.72 2.74
2222 4567 5.650266 GTGTCCCCATCAATACATTTGTACA 59.350 40.000 0.00 0.00 32.72 2.90
2223 4568 5.220777 CGTGTCCCCATCAATACATTTGTAC 60.221 44.000 0.00 0.00 32.72 2.90
2224 4569 4.878971 CGTGTCCCCATCAATACATTTGTA 59.121 41.667 0.00 0.00 34.67 2.41
2225 4570 3.694072 CGTGTCCCCATCAATACATTTGT 59.306 43.478 0.00 0.00 0.00 2.83
2226 4571 3.694072 ACGTGTCCCCATCAATACATTTG 59.306 43.478 0.00 0.00 0.00 2.32
2227 4572 3.694072 CACGTGTCCCCATCAATACATTT 59.306 43.478 7.58 0.00 0.00 2.32
2228 4573 3.278574 CACGTGTCCCCATCAATACATT 58.721 45.455 7.58 0.00 0.00 2.71
2229 4574 2.421388 CCACGTGTCCCCATCAATACAT 60.421 50.000 15.65 0.00 0.00 2.29
2230 4575 1.065782 CCACGTGTCCCCATCAATACA 60.066 52.381 15.65 0.00 0.00 2.29
2231 4576 1.208535 TCCACGTGTCCCCATCAATAC 59.791 52.381 15.65 0.00 0.00 1.89
2232 4577 1.208535 GTCCACGTGTCCCCATCAATA 59.791 52.381 15.65 0.00 0.00 1.90
2233 4578 0.035439 GTCCACGTGTCCCCATCAAT 60.035 55.000 15.65 0.00 0.00 2.57
2234 4579 1.373435 GTCCACGTGTCCCCATCAA 59.627 57.895 15.65 0.00 0.00 2.57
2235 4580 2.938086 CGTCCACGTGTCCCCATCA 61.938 63.158 15.65 0.00 34.11 3.07
2236 4581 2.125673 CGTCCACGTGTCCCCATC 60.126 66.667 15.65 0.00 34.11 3.51
2237 4582 3.702048 CCGTCCACGTGTCCCCAT 61.702 66.667 15.65 0.00 37.74 4.00
2240 4585 3.584868 CTTCCCGTCCACGTGTCCC 62.585 68.421 15.65 0.39 37.74 4.46
2241 4586 2.048503 CTTCCCGTCCACGTGTCC 60.049 66.667 15.65 3.10 37.74 4.02
2242 4587 1.080705 CTCTTCCCGTCCACGTGTC 60.081 63.158 15.65 6.36 37.74 3.67
2243 4588 1.803366 GACTCTTCCCGTCCACGTGT 61.803 60.000 15.65 0.00 37.74 4.49
2244 4589 1.080705 GACTCTTCCCGTCCACGTG 60.081 63.158 9.08 9.08 37.74 4.49
2245 4590 3.363351 GACTCTTCCCGTCCACGT 58.637 61.111 0.00 0.00 37.74 4.49
2249 4594 1.734748 GATCGGACTCTTCCCGTCC 59.265 63.158 0.00 0.00 46.53 4.79
2250 4595 1.355916 CGATCGGACTCTTCCCGTC 59.644 63.158 7.38 0.00 46.53 4.79
2251 4596 2.119655 CCGATCGGACTCTTCCCGT 61.120 63.158 30.62 0.00 46.53 5.28
2253 4598 1.455217 TCCCGATCGGACTCTTCCC 60.455 63.158 35.42 0.00 38.99 3.97
2254 4599 4.254721 TCCCGATCGGACTCTTCC 57.745 61.111 35.42 0.00 34.86 3.46
2261 4606 0.605860 GCTAGCTAGTCCCGATCGGA 60.606 60.000 35.42 18.23 38.83 4.55
2262 4607 1.587933 GGCTAGCTAGTCCCGATCGG 61.588 65.000 27.65 27.65 0.00 4.18
2263 4608 1.877367 GGCTAGCTAGTCCCGATCG 59.123 63.158 21.62 8.51 0.00 3.69
2264 4609 0.890090 ACGGCTAGCTAGTCCCGATC 60.890 60.000 33.23 13.42 0.00 3.69
2265 4610 0.890090 GACGGCTAGCTAGTCCCGAT 60.890 60.000 33.23 22.15 0.00 4.18
2266 4611 1.525535 GACGGCTAGCTAGTCCCGA 60.526 63.158 33.23 0.00 0.00 5.14
2267 4612 2.894565 CGACGGCTAGCTAGTCCCG 61.895 68.421 28.04 28.04 0.00 5.14
2268 4613 1.525535 TCGACGGCTAGCTAGTCCC 60.526 63.158 26.29 12.87 0.00 4.46
2269 4614 1.094073 TGTCGACGGCTAGCTAGTCC 61.094 60.000 26.29 19.11 0.00 3.85
2270 4615 0.027848 GTGTCGACGGCTAGCTAGTC 59.972 60.000 24.19 24.19 0.00 2.59
2271 4616 1.375098 GGTGTCGACGGCTAGCTAGT 61.375 60.000 21.62 14.99 0.00 2.57
2272 4617 1.355916 GGTGTCGACGGCTAGCTAG 59.644 63.158 16.84 16.84 0.00 3.42
2273 4618 1.374343 CTGGTGTCGACGGCTAGCTA 61.374 60.000 15.72 0.00 0.00 3.32
2274 4619 2.675423 TGGTGTCGACGGCTAGCT 60.675 61.111 15.72 0.00 0.00 3.32
2275 4620 2.202623 CTGGTGTCGACGGCTAGC 60.203 66.667 11.62 6.04 0.00 3.42
2276 4621 2.202623 GCTGGTGTCGACGGCTAG 60.203 66.667 11.62 13.98 0.00 3.42
2277 4622 2.675423 AGCTGGTGTCGACGGCTA 60.675 61.111 18.54 8.96 32.40 3.93
2278 4623 4.363990 CAGCTGGTGTCGACGGCT 62.364 66.667 11.62 14.12 33.78 5.52
2289 4634 2.598394 CCACCCACAACCAGCTGG 60.598 66.667 31.60 31.60 42.17 4.85
2290 4635 2.598394 CCCACCCACAACCAGCTG 60.598 66.667 6.78 6.78 0.00 4.24
2291 4636 3.103213 ACCCACCCACAACCAGCT 61.103 61.111 0.00 0.00 0.00 4.24
2292 4637 2.912025 CACCCACCCACAACCAGC 60.912 66.667 0.00 0.00 0.00 4.85
2293 4638 0.178964 ATTCACCCACCCACAACCAG 60.179 55.000 0.00 0.00 0.00 4.00
2294 4639 0.178975 GATTCACCCACCCACAACCA 60.179 55.000 0.00 0.00 0.00 3.67
2295 4640 0.178975 TGATTCACCCACCCACAACC 60.179 55.000 0.00 0.00 0.00 3.77
2296 4641 1.247567 CTGATTCACCCACCCACAAC 58.752 55.000 0.00 0.00 0.00 3.32
2297 4642 0.539438 GCTGATTCACCCACCCACAA 60.539 55.000 0.00 0.00 0.00 3.33
2298 4643 1.074775 GCTGATTCACCCACCCACA 59.925 57.895 0.00 0.00 0.00 4.17
2299 4644 2.040544 CGCTGATTCACCCACCCAC 61.041 63.158 0.00 0.00 0.00 4.61
2300 4645 2.350895 CGCTGATTCACCCACCCA 59.649 61.111 0.00 0.00 0.00 4.51
2301 4646 2.438434 CCGCTGATTCACCCACCC 60.438 66.667 0.00 0.00 0.00 4.61
2302 4647 1.303317 AACCGCTGATTCACCCACC 60.303 57.895 0.00 0.00 0.00 4.61
2303 4648 1.875963 CAACCGCTGATTCACCCAC 59.124 57.895 0.00 0.00 0.00 4.61
2304 4649 1.971167 GCAACCGCTGATTCACCCA 60.971 57.895 0.00 0.00 34.30 4.51
2305 4650 2.700773 GGCAACCGCTGATTCACCC 61.701 63.158 0.00 0.00 38.60 4.61
2306 4651 1.244019 AAGGCAACCGCTGATTCACC 61.244 55.000 0.00 0.00 38.60 4.02
2307 4652 0.169009 GAAGGCAACCGCTGATTCAC 59.831 55.000 0.00 0.00 38.60 3.18
2308 4653 0.250684 TGAAGGCAACCGCTGATTCA 60.251 50.000 0.00 0.00 38.60 2.57
2309 4654 0.169009 GTGAAGGCAACCGCTGATTC 59.831 55.000 0.00 0.00 38.60 2.52
2310 4655 1.244019 GGTGAAGGCAACCGCTGATT 61.244 55.000 0.00 0.00 38.60 2.57
2311 4656 1.675641 GGTGAAGGCAACCGCTGAT 60.676 57.895 0.00 0.00 38.60 2.90
2312 4657 2.281484 GGTGAAGGCAACCGCTGA 60.281 61.111 0.00 0.00 38.60 4.26
2313 4658 3.726517 CGGTGAAGGCAACCGCTG 61.727 66.667 12.44 0.00 40.25 5.18
2317 4662 0.521735 GATGAACGGTGAAGGCAACC 59.478 55.000 0.00 0.00 37.17 3.77
2318 4663 0.521735 GGATGAACGGTGAAGGCAAC 59.478 55.000 0.00 0.00 0.00 4.17
2319 4664 0.400213 AGGATGAACGGTGAAGGCAA 59.600 50.000 0.00 0.00 0.00 4.52
2320 4665 0.036388 GAGGATGAACGGTGAAGGCA 60.036 55.000 0.00 0.00 0.00 4.75
2321 4666 0.036388 TGAGGATGAACGGTGAAGGC 60.036 55.000 0.00 0.00 0.00 4.35
2322 4667 2.679837 CAATGAGGATGAACGGTGAAGG 59.320 50.000 0.00 0.00 0.00 3.46
2323 4668 3.338249 ACAATGAGGATGAACGGTGAAG 58.662 45.455 0.00 0.00 0.00 3.02
2324 4669 3.244387 TGACAATGAGGATGAACGGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
2325 4670 2.301583 TGACAATGAGGATGAACGGTGA 59.698 45.455 0.00 0.00 0.00 4.02
2326 4671 2.698803 TGACAATGAGGATGAACGGTG 58.301 47.619 0.00 0.00 0.00 4.94
2327 4672 3.074412 GTTGACAATGAGGATGAACGGT 58.926 45.455 0.00 0.00 0.00 4.83
2328 4673 2.094258 CGTTGACAATGAGGATGAACGG 59.906 50.000 0.75 0.00 0.00 4.44
2329 4674 2.736721 ACGTTGACAATGAGGATGAACG 59.263 45.455 14.34 0.00 37.19 3.95
2330 4675 4.749245 AACGTTGACAATGAGGATGAAC 57.251 40.909 14.34 0.00 0.00 3.18
2331 4676 6.869315 TTAAACGTTGACAATGAGGATGAA 57.131 33.333 14.34 0.00 0.00 2.57
2332 4677 6.093495 GGATTAAACGTTGACAATGAGGATGA 59.907 38.462 14.34 0.00 0.00 2.92
2333 4678 6.258160 GGATTAAACGTTGACAATGAGGATG 58.742 40.000 14.34 0.00 0.00 3.51
2334 4679 5.064707 CGGATTAAACGTTGACAATGAGGAT 59.935 40.000 14.34 2.92 0.00 3.24
2335 4680 4.390603 CGGATTAAACGTTGACAATGAGGA 59.609 41.667 14.34 0.00 0.00 3.71
2336 4681 4.390603 TCGGATTAAACGTTGACAATGAGG 59.609 41.667 14.34 0.00 0.00 3.86
2337 4682 5.524511 TCGGATTAAACGTTGACAATGAG 57.475 39.130 14.34 0.96 0.00 2.90
2338 4683 5.697178 TCTTCGGATTAAACGTTGACAATGA 59.303 36.000 14.34 0.00 0.00 2.57
2339 4684 5.922546 TCTTCGGATTAAACGTTGACAATG 58.077 37.500 0.00 5.83 0.00 2.82
2340 4685 6.548441 TTCTTCGGATTAAACGTTGACAAT 57.452 33.333 0.00 1.93 0.00 2.71
2341 4686 5.987777 TTCTTCGGATTAAACGTTGACAA 57.012 34.783 0.00 0.00 0.00 3.18
2342 4687 5.987777 TTTCTTCGGATTAAACGTTGACA 57.012 34.783 0.00 0.00 0.00 3.58
2343 4688 6.356190 CAGTTTTCTTCGGATTAAACGTTGAC 59.644 38.462 0.00 0.00 36.03 3.18
2344 4689 6.423862 CAGTTTTCTTCGGATTAAACGTTGA 58.576 36.000 0.00 0.00 36.03 3.18
2345 4690 5.623673 CCAGTTTTCTTCGGATTAAACGTTG 59.376 40.000 0.00 0.00 36.03 4.10
2346 4691 5.528320 TCCAGTTTTCTTCGGATTAAACGTT 59.472 36.000 0.00 0.00 36.03 3.99
2347 4692 5.058490 TCCAGTTTTCTTCGGATTAAACGT 58.942 37.500 3.36 0.00 36.03 3.99
2348 4693 5.407387 TCTCCAGTTTTCTTCGGATTAAACG 59.593 40.000 0.00 0.00 36.03 3.60
2349 4694 6.796705 TCTCCAGTTTTCTTCGGATTAAAC 57.203 37.500 0.00 0.00 0.00 2.01
2350 4695 7.717875 TCTTTCTCCAGTTTTCTTCGGATTAAA 59.282 33.333 0.00 0.00 0.00 1.52
2351 4696 7.221450 TCTTTCTCCAGTTTTCTTCGGATTAA 58.779 34.615 0.00 0.00 0.00 1.40
2352 4697 6.765403 TCTTTCTCCAGTTTTCTTCGGATTA 58.235 36.000 0.00 0.00 0.00 1.75
2353 4698 5.621193 TCTTTCTCCAGTTTTCTTCGGATT 58.379 37.500 0.00 0.00 0.00 3.01
2354 4699 5.228945 TCTTTCTCCAGTTTTCTTCGGAT 57.771 39.130 0.00 0.00 0.00 4.18
2355 4700 4.682778 TCTTTCTCCAGTTTTCTTCGGA 57.317 40.909 0.00 0.00 0.00 4.55
2356 4701 5.057149 TCTTCTTTCTCCAGTTTTCTTCGG 58.943 41.667 0.00 0.00 0.00 4.30
2357 4702 6.203723 ACATCTTCTTTCTCCAGTTTTCTTCG 59.796 38.462 0.00 0.00 0.00 3.79
2358 4703 7.012799 ACACATCTTCTTTCTCCAGTTTTCTTC 59.987 37.037 0.00 0.00 0.00 2.87
2359 4704 6.830838 ACACATCTTCTTTCTCCAGTTTTCTT 59.169 34.615 0.00 0.00 0.00 2.52
2360 4705 6.261826 CACACATCTTCTTTCTCCAGTTTTCT 59.738 38.462 0.00 0.00 0.00 2.52
2361 4706 6.433766 CACACATCTTCTTTCTCCAGTTTTC 58.566 40.000 0.00 0.00 0.00 2.29
2362 4707 5.300286 CCACACATCTTCTTTCTCCAGTTTT 59.700 40.000 0.00 0.00 0.00 2.43
2363 4708 4.823989 CCACACATCTTCTTTCTCCAGTTT 59.176 41.667 0.00 0.00 0.00 2.66
2364 4709 4.392940 CCACACATCTTCTTTCTCCAGTT 58.607 43.478 0.00 0.00 0.00 3.16
2365 4710 3.808618 GCCACACATCTTCTTTCTCCAGT 60.809 47.826 0.00 0.00 0.00 4.00
2366 4711 2.746362 GCCACACATCTTCTTTCTCCAG 59.254 50.000 0.00 0.00 0.00 3.86
2367 4712 2.783135 GCCACACATCTTCTTTCTCCA 58.217 47.619 0.00 0.00 0.00 3.86
2368 4713 1.734465 CGCCACACATCTTCTTTCTCC 59.266 52.381 0.00 0.00 0.00 3.71
2369 4714 1.129437 GCGCCACACATCTTCTTTCTC 59.871 52.381 0.00 0.00 0.00 2.87
2370 4715 1.160137 GCGCCACACATCTTCTTTCT 58.840 50.000 0.00 0.00 0.00 2.52
2371 4716 0.169009 GGCGCCACACATCTTCTTTC 59.831 55.000 24.80 0.00 0.00 2.62
2372 4717 0.537143 TGGCGCCACACATCTTCTTT 60.537 50.000 29.03 0.00 0.00 2.52
2373 4718 1.073025 TGGCGCCACACATCTTCTT 59.927 52.632 29.03 0.00 0.00 2.52
2374 4719 1.672356 GTGGCGCCACACATCTTCT 60.672 57.895 46.18 0.00 45.53 2.85
2375 4720 2.870372 GTGGCGCCACACATCTTC 59.130 61.111 46.18 22.96 45.53 2.87
2383 4728 3.723348 GAGAAACCGTGGCGCCAC 61.723 66.667 43.07 43.07 43.01 5.01
2386 4731 3.723348 GTGGAGAAACCGTGGCGC 61.723 66.667 0.00 0.00 42.61 6.53
2387 4732 2.752322 TACGTGGAGAAACCGTGGCG 62.752 60.000 0.00 0.00 42.61 5.69
2388 4733 1.005867 TACGTGGAGAAACCGTGGC 60.006 57.895 0.00 0.00 42.61 5.01
2389 4734 0.599558 TCTACGTGGAGAAACCGTGG 59.400 55.000 0.00 0.00 42.61 4.94
2390 4735 1.268899 ACTCTACGTGGAGAAACCGTG 59.731 52.381 32.47 7.42 42.61 4.94
2391 4736 1.268899 CACTCTACGTGGAGAAACCGT 59.731 52.381 32.47 9.55 42.61 4.83
2392 4737 1.978542 CACTCTACGTGGAGAAACCG 58.021 55.000 32.47 12.79 42.61 4.44
2393 4738 1.711206 GCACTCTACGTGGAGAAACC 58.289 55.000 32.47 14.51 43.97 3.27
2394 4739 1.068748 TCGCACTCTACGTGGAGAAAC 60.069 52.381 32.47 19.57 43.97 2.78
2395 4740 1.068748 GTCGCACTCTACGTGGAGAAA 60.069 52.381 32.47 13.18 43.97 2.52
2396 4741 0.520404 GTCGCACTCTACGTGGAGAA 59.480 55.000 32.47 13.50 43.97 2.87
2397 4742 0.321387 AGTCGCACTCTACGTGGAGA 60.321 55.000 32.47 11.84 43.97 3.71
2398 4743 0.522180 AAGTCGCACTCTACGTGGAG 59.478 55.000 25.48 25.48 43.97 3.86
2399 4744 0.956633 AAAGTCGCACTCTACGTGGA 59.043 50.000 0.34 0.34 43.97 4.02
2400 4745 2.516923 CTAAAGTCGCACTCTACGTGG 58.483 52.381 0.00 0.00 43.97 4.94
2401 4746 1.912110 GCTAAAGTCGCACTCTACGTG 59.088 52.381 0.00 0.00 46.58 4.49
2402 4747 1.135460 GGCTAAAGTCGCACTCTACGT 60.135 52.381 0.00 0.00 0.00 3.57
2403 4748 1.546834 GGCTAAAGTCGCACTCTACG 58.453 55.000 0.00 0.00 0.00 3.51
2404 4749 1.546834 CGGCTAAAGTCGCACTCTAC 58.453 55.000 0.00 0.00 35.94 2.59
2405 4750 0.454600 CCGGCTAAAGTCGCACTCTA 59.545 55.000 0.00 0.00 42.59 2.43
2406 4751 1.215647 CCGGCTAAAGTCGCACTCT 59.784 57.895 0.00 0.00 42.59 3.24
2407 4752 1.080025 ACCGGCTAAAGTCGCACTC 60.080 57.895 0.00 0.00 42.59 3.51
2408 4753 1.374252 CACCGGCTAAAGTCGCACT 60.374 57.895 0.00 0.00 42.59 4.40
2409 4754 2.388232 CCACCGGCTAAAGTCGCAC 61.388 63.158 0.00 0.00 42.59 5.34
2410 4755 1.895020 ATCCACCGGCTAAAGTCGCA 61.895 55.000 0.00 0.00 42.59 5.10
2411 4756 1.152383 GATCCACCGGCTAAAGTCGC 61.152 60.000 0.00 0.00 42.59 5.19
2412 4757 0.870307 CGATCCACCGGCTAAAGTCG 60.870 60.000 0.00 0.16 43.72 4.18
2413 4758 0.458669 TCGATCCACCGGCTAAAGTC 59.541 55.000 0.00 0.00 0.00 3.01
2414 4759 0.899720 TTCGATCCACCGGCTAAAGT 59.100 50.000 0.00 0.00 0.00 2.66
2415 4760 1.287425 GTTCGATCCACCGGCTAAAG 58.713 55.000 0.00 0.00 0.00 1.85
2416 4761 3.446507 GTTCGATCCACCGGCTAAA 57.553 52.632 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.