AutoCloner

Multiple sequence alignment - TraesCS2A01G522700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G522700	chr2A	100.000	5754	0	0	1	5754	744814365	744808612	0.000000e+00	10626
1	TraesCS2A01G522700	chr2A	81.202	3362	568	39	4	3338	739822791	739819467	0.000000e+00	2649
2	TraesCS2A01G522700	chr2A	74.880	1043	227	31	1050	2077	133661544	133660522	5.290000e-120	442
3	TraesCS2A01G522700	chr2D	96.081	5793	182	15	1	5750	88599594	88605384	0.000000e+00	9398
4	TraesCS2A01G522700	chr2D	95.720	3808	121	9	1926	5692	88683963	88687769	0.000000e+00	6091
5	TraesCS2A01G522700	chr2D	97.004	1936	52	6	1	1933	88668177	88670109	0.000000e+00	3249
6	TraesCS2A01G522700	chr7D	81.724	3387	559	43	1	3356	575626266	575629623	0.000000e+00	2771
7	TraesCS2A01G522700	chr7D	93.443	244	16	0	5507	5750	575651500	575651743	4.240000e-96	363
8	TraesCS2A01G522700	chr7D	94.215	121	7	0	5085	5205	574054771	574054891	9.850000e-43	185
9	TraesCS2A01G522700	chr3D	81.676	3400	555	53	1	3368	419645690	419642327	0.000000e+00	2765
10	TraesCS2A01G522700	chr3D	81.561	3395	569	43	1	3368	355129597	355126233	0.000000e+00	2748
11	TraesCS2A01G522700	chr3D	94.191	241	14	0	5510	5750	355116762	355116522	9.110000e-98	368
12	TraesCS2A01G522700	chr3D	94.191	241	14	0	5510	5750	419633244	419633004	9.110000e-98	368
13	TraesCS2A01G522700	chr5D	81.673	3383	563	43	1	3356	90275423	90278775	0.000000e+00	2760
14	TraesCS2A01G522700	chr5D	81.619	3384	564	44	1	3356	564857748	564861101	0.000000e+00	2750
15	TraesCS2A01G522700	chr5D	81.250	1216	207	17	2151	3356	409707286	409708490	0.000000e+00	963
16	TraesCS2A01G522700	chr5D	93.443	244	16	0	5507	5750	564870141	564870384	4.240000e-96	363
17	TraesCS2A01G522700	chr5D	95.745	141	6	0	5507	5647	90287151	90287291	1.610000e-55	228
18	TraesCS2A01G522700	chrUn	81.500	3400	558	56	1	3368	70185496	70182136	0.000000e+00	2728
19	TraesCS2A01G522700	chrUn	74.281	1112	239	33	994	2093	136594158	136593082	5.330000e-115	425
20	TraesCS2A01G522700	chrUn	94.191	241	14	0	5510	5750	70173054	70172814	9.110000e-98	368
21	TraesCS2A01G522700	chr2B	81.220	3360	571	40	4	3338	679736346	679733022	0.000000e+00	2654
22	TraesCS2A01G522700	chr2B	80.664	512	90	7	2832	3338	770715452	770714945	6.990000e-104	388
23	TraesCS2A01G522700	chr6D	83.905	1808	249	27	1	1800	97148192	97146419	0.000000e+00	1688
24	TraesCS2A01G522700	chr5A	80.255	1646	305	16	4	1635	47676816	47675177	0.000000e+00	1221
25	TraesCS2A01G522700	chr4D	83.670	1139	178	8	8	1142	284438684	284437550	0.000000e+00	1066
26	TraesCS2A01G522700	chr1B	76.360	1066	198	29	4508	5548	645977777	645978813	1.840000e-144	523
27	TraesCS2A01G522700	chr1B	76.007	1067	201	29	4508	5548	646031288	646032325	8.610000e-138	501
28	TraesCS2A01G522700	chr1B	75.772	1069	200	32	4508	5548	646004143	646005180	8.670000e-133	484
29	TraesCS2A01G522700	chr3A	75.207	1089	238	29	1019	2093	98595128	98594058	2.410000e-133	486
30	TraesCS2A01G522700	chr7B	94.215	121	7	0	5085	5205	415338370	415338490	9.850000e-43	185

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G522700	chr2A	744808612	744814365	5753	True	10626	10626	100.000	1	5754	1	chr2A.!!$R3	5753
1	TraesCS2A01G522700	chr2A	739819467	739822791	3324	True	2649	2649	81.202	4	3338	1	chr2A.!!$R2	3334
2	TraesCS2A01G522700	chr2A	133660522	133661544	1022	True	442	442	74.880	1050	2077	1	chr2A.!!$R1	1027
3	TraesCS2A01G522700	chr2D	88599594	88605384	5790	False	9398	9398	96.081	1	5750	1	chr2D.!!$F1	5749
4	TraesCS2A01G522700	chr2D	88683963	88687769	3806	False	6091	6091	95.720	1926	5692	1	chr2D.!!$F3	3766
5	TraesCS2A01G522700	chr2D	88668177	88670109	1932	False	3249	3249	97.004	1	1933	1	chr2D.!!$F2	1932
6	TraesCS2A01G522700	chr7D	575626266	575629623	3357	False	2771	2771	81.724	1	3356	1	chr7D.!!$F2	3355
7	TraesCS2A01G522700	chr3D	419642327	419645690	3363	True	2765	2765	81.676	1	3368	1	chr3D.!!$R4	3367
8	TraesCS2A01G522700	chr3D	355126233	355129597	3364	True	2748	2748	81.561	1	3368	1	chr3D.!!$R2	3367
9	TraesCS2A01G522700	chr5D	90275423	90278775	3352	False	2760	2760	81.673	1	3356	1	chr5D.!!$F1	3355
10	TraesCS2A01G522700	chr5D	564857748	564861101	3353	False	2750	2750	81.619	1	3356	1	chr5D.!!$F4	3355
11	TraesCS2A01G522700	chr5D	409707286	409708490	1204	False	963	963	81.250	2151	3356	1	chr5D.!!$F3	1205
12	TraesCS2A01G522700	chrUn	70182136	70185496	3360	True	2728	2728	81.500	1	3368	1	chrUn.!!$R2	3367
13	TraesCS2A01G522700	chrUn	136593082	136594158	1076	True	425	425	74.281	994	2093	1	chrUn.!!$R3	1099
14	TraesCS2A01G522700	chr2B	679733022	679736346	3324	True	2654	2654	81.220	4	3338	1	chr2B.!!$R1	3334
15	TraesCS2A01G522700	chr2B	770714945	770715452	507	True	388	388	80.664	2832	3338	1	chr2B.!!$R2	506
16	TraesCS2A01G522700	chr6D	97146419	97148192	1773	True	1688	1688	83.905	1	1800	1	chr6D.!!$R1	1799
17	TraesCS2A01G522700	chr5A	47675177	47676816	1639	True	1221	1221	80.255	4	1635	1	chr5A.!!$R1	1631
18	TraesCS2A01G522700	chr4D	284437550	284438684	1134	True	1066	1066	83.670	8	1142	1	chr4D.!!$R1	1134
19	TraesCS2A01G522700	chr1B	645977777	645978813	1036	False	523	523	76.360	4508	5548	1	chr1B.!!$F1	1040
20	TraesCS2A01G522700	chr1B	646031288	646032325	1037	False	501	501	76.007	4508	5548	1	chr1B.!!$F3	1040
21	TraesCS2A01G522700	chr1B	646004143	646005180	1037	False	484	484	75.772	4508	5548	1	chr1B.!!$F2	1040
22	TraesCS2A01G522700	chr3A	98594058	98595128	1070	True	486	486	75.207	1019	2093	1	chr3A.!!$R1	1074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
769	774	0.988832	TTCCTGCAATAGAACCGGGT	59.011	50.000	6.32	0.00	0.00	5.28	F
1032	1053	1.207791	GGATGAGCCTTCTCTCCCAA	58.792	55.000	0.00	0.00	40.03	4.12	F
2241	2272	2.434359	CCTGTTCGCGAACCTCCC	60.434	66.667	40.08	21.87	40.46	4.30	F
3320	3363	1.668628	CGCCGCAAGCTTTTTATTGGT	60.669	47.619	0.00	0.00	40.39	3.67	F
3677	3720	0.248012	TTCCGCGCCTATGACAAAGA	59.752	50.000	0.00	0.00	0.00	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2693	2729	1.180029	GTCATGAGTGGCTTGCCAAT	58.820	50.000	16.55	15.59	0.00	3.16	R
3021	3057	3.373130	CACAACGAGTGTAGACGATCCTA	59.627	47.826	0.00	0.00	43.40	2.94	R
3373	3416	0.895559	GACAACCTTTCCAGCCTGGG	60.896	60.000	11.68	0.00	38.32	4.45	R
4625	4690	1.337260	GGTCTGTTCAGCACGACATCT	60.337	52.381	0.00	0.00	31.43	2.90	R
5263	5346	3.676093	TCACAGACGACTCATAGACACT	58.324	45.455	0.00	0.00	0.00	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	61	1.862201	CACCAACGAACGAAACTGCTA	59.138	47.619	0.14	0.00	0.00	3.49
144	145	9.646427	GTTGTGATACTATAGGGAATTCATCTC	57.354	37.037	7.93	1.30	0.00	2.75
213	214	9.320295	TGAATGGGATTAAGGTCAATAACTTTT	57.680	29.630	0.00	0.00	0.00	2.27
269	270	5.367644	TCCCATCATGCTCTTGAGAAATCTA	59.632	40.000	1.30	0.00	0.00	1.98
322	323	6.209391	ACAAGGCTTATAATCACAAAGCTTGT	59.791	34.615	0.00	13.39	46.75	3.16
441	442	2.416547	CCTTTCACTTTGCATCGTCGAT	59.583	45.455	0.75	0.75	0.00	3.59
767	772	2.691409	TCTTCCTGCAATAGAACCGG	57.309	50.000	0.00	0.00	0.00	5.28
769	774	0.988832	TTCCTGCAATAGAACCGGGT	59.011	50.000	6.32	0.00	0.00	5.28
967	977	5.132897	TGCTCTTTCTTTCTCTGTCTCTC	57.867	43.478	0.00	0.00	0.00	3.20
970	980	5.279456	GCTCTTTCTTTCTCTGTCTCTCCTT	60.279	44.000	0.00	0.00	0.00	3.36
1032	1053	1.207791	GGATGAGCCTTCTCTCCCAA	58.792	55.000	0.00	0.00	40.03	4.12
1320	1347	6.352516	AGGCAGTGTTTATCTAATGAAGAGG	58.647	40.000	0.00	0.00	37.74	3.69
1621	1652	3.057876	TGGCCGAATTATTGTTGTCACAC	60.058	43.478	0.00	0.00	30.32	3.82
1951	1982	2.851263	TAGCCCGTTGTTCAATCTGT	57.149	45.000	0.00	0.00	0.00	3.41
2241	2272	2.434359	CCTGTTCGCGAACCTCCC	60.434	66.667	40.08	21.87	40.46	4.30
2693	2729	4.402829	TGATAGGGCTGCAAAACAAGTTA	58.597	39.130	0.50	0.00	0.00	2.24
2939	2975	3.585289	TGACCTTGTACCCTTTGCATCTA	59.415	43.478	0.00	0.00	0.00	1.98
3021	3057	3.718956	CCCATTCCCACCTCTTTCTCTAT	59.281	47.826	0.00	0.00	0.00	1.98
3169	3205	4.834496	TCTGCATTCAAAGGAAAAGGACAT	59.166	37.500	0.00	0.00	36.43	3.06
3179	3215	4.666512	AGGAAAAGGACATGCTATTGTGT	58.333	39.130	0.00	0.00	0.00	3.72
3221	3259	6.503217	TCAATCCTCCATTTCTCCTAGCATAT	59.497	38.462	0.00	0.00	0.00	1.78
3227	3265	9.206690	CCTCCATTTCTCCTAGCATATATTCTA	57.793	37.037	0.00	0.00	0.00	2.10
3263	3305	4.742438	TTGCCTACGACTGATGTTTTTC	57.258	40.909	0.00	0.00	0.00	2.29
3320	3363	1.668628	CGCCGCAAGCTTTTTATTGGT	60.669	47.619	0.00	0.00	40.39	3.67
3344	3387	3.528597	CCTAAGTCTAAGGGCACTGAC	57.471	52.381	0.00	0.00	0.00	3.51
3356	3399	1.901085	CACTGACCTACCTGCCTCC	59.099	63.158	0.00	0.00	0.00	4.30
3467	3510	0.527565	CCATGCCAACTGTTAGTGCC	59.472	55.000	0.00	0.00	0.00	5.01
3535	3578	5.287752	GCTTGATGTGCAATAATCTGTGTTG	59.712	40.000	0.00	0.00	35.59	3.33
3648	3691	4.092968	GGTAAAGGCTCATGAACTGTTACG	59.907	45.833	0.00	0.00	0.00	3.18
3677	3720	0.248012	TTCCGCGCCTATGACAAAGA	59.752	50.000	0.00	0.00	0.00	2.52
3681	3724	1.258982	CGCGCCTATGACAAAGACATC	59.741	52.381	0.00	0.00	0.00	3.06
3769	3812	7.707035	GGAATATCTCCTGGTTTAGTATATGCG	59.293	40.741	0.00	0.00	41.61	4.73
3810	3853	9.725206	TTTCTAATATAGTTCTAGGGTCCAGTT	57.275	33.333	0.00	0.00	0.00	3.16
3848	3891	7.279536	TGCTGCTTTGTCATATCTCTTAAGAAG	59.720	37.037	6.63	1.45	34.49	2.85
3889	3933	1.000171	GCCAGTTTGCTCCCTTTTCTG	60.000	52.381	0.00	0.00	0.00	3.02
3948	3992	9.202273	GGCACAACAAATATTATCAACTTTTCA	57.798	29.630	0.00	0.00	0.00	2.69
3969	4013	8.545229	TTTCACTGTTTTGTTGTTCATTGATT	57.455	26.923	0.00	0.00	0.00	2.57
3994	4038	4.885907	ACTGTAAGCTAGACGCCTATACAA	59.114	41.667	0.00	0.00	40.39	2.41
4062	4106	8.826765	TCTTTTAGATGAAAACCACCTCTCTAT	58.173	33.333	0.00	0.00	33.39	1.98
4132	4176	6.647334	TTTGATCAGGCATTTCTTTGTACA	57.353	33.333	0.00	0.00	0.00	2.90
4625	4690	5.970317	TCAAGTAAAGTCTACGATGGACA	57.030	39.130	0.00	0.00	36.29	4.02
4772	4842	1.729586	AGACAGGGCTTTGACACCTA	58.270	50.000	0.00	0.00	32.22	3.08
4773	4843	2.269940	AGACAGGGCTTTGACACCTAT	58.730	47.619	0.00	0.00	32.22	2.57
4799	4869	2.296792	TGTGTCAAACCACTGTCATGG	58.703	47.619	0.00	0.00	46.10	3.66
4948	5028	7.963532	TCTAAGTCCTCTTGTTGTTCTTATGT	58.036	34.615	0.00	0.00	35.36	2.29
5047	5130	2.677836	GCCGAGCTAAACATCATGTTCA	59.322	45.455	2.74	0.00	40.14	3.18
5078	5161	3.751698	GGTTAACTGTTCCAGATGACCAC	59.248	47.826	5.42	0.00	40.68	4.16
5263	5346	8.648693	GTTTCCTATCATCCTAAGCCTTTAGTA	58.351	37.037	0.00	0.00	35.51	1.82
5288	5379	0.733150	TATGAGTCGTCTGTGAGCCG	59.267	55.000	0.00	0.00	0.00	5.52
5442	5533	3.054802	ACCAGCTCTAGACTTTTCCCATG	60.055	47.826	0.00	0.00	0.00	3.66
5579	5676	2.956333	GCCCTGGTTTACAGTCAAAGTT	59.044	45.455	0.00	0.00	46.06	2.66
5662	5759	2.522836	AATTGCCATTGTGCGTTCAA	57.477	40.000	0.00	0.00	0.00	2.69
5724	5821	4.450419	CGCAGGTTGAAAAATTATTGGCAA	59.550	37.500	0.68	0.68	0.00	4.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
269	270	6.909550	TTACATAAGCCTGTTGATTGGTTT	57.090	33.333	0.00	0.00	0.00	3.27
322	323	6.119536	ACAATCGCCTCAATAACCTTATCAA	58.880	36.000	0.00	0.00	0.00	2.57
441	442	4.399483	AGGACACTCTAACAGGGAACTA	57.601	45.455	0.00	0.00	40.21	2.24
712	714	7.148820	CCACAAAAACATACCTAAGCAAATTCG	60.149	37.037	0.00	0.00	0.00	3.34
719	724	6.745116	AGAAACCACAAAAACATACCTAAGC	58.255	36.000	0.00	0.00	0.00	3.09
967	977	2.856222	AGCAGAGGTGAGAAAACAAGG	58.144	47.619	0.00	0.00	0.00	3.61
970	980	3.281727	ACAAGCAGAGGTGAGAAAACA	57.718	42.857	0.00	0.00	0.00	2.83
1032	1053	6.070366	TCCAGAACATCTCTCTGTCATTGATT	60.070	38.462	0.00	0.00	38.96	2.57
1202	1229	7.138736	CACATTTACATTAGAATTTAGGGGCG	58.861	38.462	0.00	0.00	0.00	6.13
1320	1347	3.184986	GCTTTGATGGTTTGCACATGAAC	59.815	43.478	0.00	0.00	0.00	3.18
1576	1607	7.415541	GCCAATCACATCTGTAAATAGCAAAGA	60.416	37.037	0.00	0.00	0.00	2.52
1621	1652	5.228579	TGTGAGTGTACAACAACAATGTG	57.771	39.130	0.00	0.00	40.46	3.21
1951	1982	2.029470	GGGAAAATGTGCATCAAACCGA	60.029	45.455	0.00	0.00	0.00	4.69
2133	2164	9.927668	CTGGATTAAAAATGGTTAATTGTGACT	57.072	29.630	0.00	0.00	34.53	3.41
2136	2167	7.823799	AGGCTGGATTAAAAATGGTTAATTGTG	59.176	33.333	0.00	0.00	34.53	3.33
2693	2729	1.180029	GTCATGAGTGGCTTGCCAAT	58.820	50.000	16.55	15.59	0.00	3.16
3021	3057	3.373130	CACAACGAGTGTAGACGATCCTA	59.627	47.826	0.00	0.00	43.40	2.94
3179	3215	5.491078	AGGATTGATACCTGGGTGTTTTAGA	59.509	40.000	2.07	0.00	36.30	2.10
3227	3265	7.444487	AGTCGTAGGCAAAGAAGAAGTATTTTT	59.556	33.333	0.00	0.00	0.00	1.94
3344	3387	1.327690	TGCTAACGGAGGCAGGTAGG	61.328	60.000	2.76	0.00	34.22	3.18
3373	3416	0.895559	GACAACCTTTCCAGCCTGGG	60.896	60.000	11.68	0.00	38.32	4.45
3414	3457	2.755469	ATTTCCAGCGGCGGCAAT	60.755	55.556	19.21	6.38	43.41	3.56
3535	3578	1.812571	CAACCTGTACAGATTGGTGCC	59.187	52.381	24.68	0.00	32.53	5.01
3560	3603	1.604278	GCAGTTGTGGTTTCAGTCTCC	59.396	52.381	0.00	0.00	0.00	3.71
3648	3691	2.453638	GGCGCGGAAGTAGCTGAAC	61.454	63.158	8.83	0.00	37.14	3.18
3677	3720	4.810790	CAAGACAGGAGTAAAGTCGATGT	58.189	43.478	0.00	0.00	37.36	3.06
3681	3724	3.057174	AGAGCAAGACAGGAGTAAAGTCG	60.057	47.826	0.00	0.00	37.36	4.18
3769	3812	1.818642	AGAAAGAGCACAGACCATGC	58.181	50.000	0.00	0.00	43.74	4.06
3801	3844	4.142249	GCAAATACAATGGTAACTGGACCC	60.142	45.833	0.00	0.00	38.89	4.46
3810	3853	5.242615	TGACAAAGCAGCAAATACAATGGTA	59.757	36.000	0.00	0.00	0.00	3.25
3848	3891	5.578776	GGCAACAAAATAGTATGTACCAGC	58.421	41.667	0.00	0.00	0.00	4.85
3889	3933	3.743521	TCTGCATATACCAATGAGCCAC	58.256	45.455	0.00	0.00	0.00	5.01
3948	3992	7.276218	CAGTGAATCAATGAACAACAAAACAGT	59.724	33.333	4.50	0.00	30.53	3.55
3955	3999	6.262944	AGCTTACAGTGAATCAATGAACAACA	59.737	34.615	17.94	0.00	33.46	3.33
4005	4049	5.745227	ACCCACTGGATTACTAAATCACAG	58.255	41.667	0.00	11.65	42.88	3.66
4006	4050	5.487488	AGACCCACTGGATTACTAAATCACA	59.513	40.000	0.00	0.00	42.88	3.58
4082	4126	1.012086	GCATGCATCAGCGAAGAAGA	58.988	50.000	14.21	0.00	46.23	2.87
4107	4151	8.243426	GTGTACAAAGAAATGCCTGATCAAATA	58.757	33.333	0.00	0.00	0.00	1.40
4132	4176	4.858850	TCATGAATGTGGAAATAGCAGGT	58.141	39.130	0.00	0.00	0.00	4.00
4197	4242	6.503524	GTGCAAGGAAAAATAACTGAGAACA	58.496	36.000	0.00	0.00	0.00	3.18
4418	4466	1.679153	GAAAGAACTTTGGGACGCCAA	59.321	47.619	4.48	0.00	32.11	4.52
4481	4544	8.816894	TGGAATTGAAGAGATGTTAGTCTTACT	58.183	33.333	0.00	0.00	33.04	2.24
4492	4555	9.993454	TGTAGAATAGATGGAATTGAAGAGATG	57.007	33.333	0.00	0.00	0.00	2.90
4625	4690	1.337260	GGTCTGTTCAGCACGACATCT	60.337	52.381	0.00	0.00	31.43	2.90
4772	4842	6.061441	TGACAGTGGTTTGACACAATTCTAT	58.939	36.000	0.00	0.00	43.72	1.98
4773	4843	5.432645	TGACAGTGGTTTGACACAATTCTA	58.567	37.500	0.00	0.00	43.72	2.10
4799	4869	4.032558	CGAGGACGTAAATAAAGGAGTTGC	59.967	45.833	0.00	0.00	34.56	4.17
4948	5028	9.890629	ATATAAGACATAAGAAGAAGCACACAA	57.109	29.630	0.00	0.00	0.00	3.33
5047	5130	4.798882	TGGAACAGTTAACCAACAGGAAT	58.201	39.130	0.88	0.00	37.10	3.01
5078	5161	8.344831	TCAAACATACACAAAGAACATCTTGAG	58.655	33.333	0.00	0.00	36.71	3.02
5263	5346	3.676093	TCACAGACGACTCATAGACACT	58.324	45.455	0.00	0.00	0.00	3.55
5288	5379	3.730761	CACACAGCAGCGGAAGGC	61.731	66.667	0.00	0.00	44.05	4.35
5442	5533	6.590234	ACCTTCTTTCCCAATGTTTCATAC	57.410	37.500	0.00	0.00	0.00	2.39
5549	5646	3.947834	CTGTAAACCAGGGCCTTGATTAG	59.052	47.826	18.01	1.40	37.54	1.73
5571	5668	4.037923	TGAAGGGCAGAATTCAACTTTGAC	59.962	41.667	8.44	0.00	36.83	3.18
5579	5676	4.343231	TGCTATTTGAAGGGCAGAATTCA	58.657	39.130	8.44	0.00	33.73	2.57
5692	5789	4.920640	TTTTCAACCTGCGGTCAAATAA	57.079	36.364	0.69	0.00	33.12	1.40
5693	5790	4.920640	TTTTTCAACCTGCGGTCAAATA	57.079	36.364	0.69	0.00	33.12	1.40
5699	5796	4.565022	CCAATAATTTTTCAACCTGCGGT	58.435	39.130	0.00	0.00	37.65	5.68
5704	5801	7.278875	TCAAGTTGCCAATAATTTTTCAACCT	58.721	30.769	0.00	0.00	35.67	3.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.