Multiple sequence alignment - TraesCS2A01G522500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G522500 chr2A 100.000 3152 0 0 1 3152 744806650 744803499 0.000000e+00 5821.0
1 TraesCS2A01G522500 chr2A 90.112 445 43 1 535 978 133643436 133642992 7.580000e-161 577.0
2 TraesCS2A01G522500 chr2A 91.623 382 29 3 2512 2893 439794590 439794212 2.780000e-145 525.0
3 TraesCS2A01G522500 chr2A 89.369 301 31 1 2106 2405 438725357 438725057 8.250000e-101 377.0
4 TraesCS2A01G522500 chr2A 87.692 65 8 0 3042 3106 608922900 608922836 3.370000e-10 76.8
5 TraesCS2A01G522500 chr6A 95.539 1457 45 1 968 2404 121671219 121672675 0.000000e+00 2313.0
6 TraesCS2A01G522500 chr6A 97.289 627 16 1 214 840 121670451 121671076 0.000000e+00 1062.0
7 TraesCS2A01G522500 chr6A 95.526 380 14 2 2514 2893 121672800 121673176 3.480000e-169 604.0
8 TraesCS2A01G522500 chr6A 91.623 382 29 3 2512 2893 558144332 558143954 2.780000e-145 525.0
9 TraesCS2A01G522500 chr6A 88.298 94 7 3 2383 2475 121672721 121672811 3.320000e-20 110.0
10 TraesCS2A01G522500 chr5D 94.303 1457 63 5 968 2405 409715027 409716482 0.000000e+00 2213.0
11 TraesCS2A01G522500 chr5D 92.666 1459 84 6 968 2405 564867722 564869178 0.000000e+00 2080.0
12 TraesCS2A01G522500 chr5D 91.904 457 37 0 520 976 154611169 154611625 9.530000e-180 640.0
13 TraesCS2A01G522500 chr5D 94.086 372 22 0 2522 2893 409717096 409717467 1.640000e-157 566.0
14 TraesCS2A01G522500 chr5D 93.089 246 17 0 968 1213 90285613 90285858 8.310000e-96 361.0
15 TraesCS2A01G522500 chrUn 93.814 1455 69 4 971 2405 70175474 70174021 0.000000e+00 2169.0
16 TraesCS2A01G522500 chr7D 93.621 1458 72 4 968 2405 575649080 575650536 0.000000e+00 2158.0
17 TraesCS2A01G522500 chr6B 93.496 1476 52 3 971 2405 139417786 139416314 0.000000e+00 2154.0
18 TraesCS2A01G522500 chr6B 96.539 1127 39 0 1279 2405 707973768 707974894 0.000000e+00 1866.0
19 TraesCS2A01G522500 chr6B 92.708 384 25 2 2510 2893 707975016 707975396 4.590000e-153 551.0
20 TraesCS2A01G522500 chr6B 91.623 382 29 3 2512 2893 100913396 100913018 2.780000e-145 525.0
21 TraesCS2A01G522500 chr6B 96.386 249 9 0 968 1216 707973330 707973578 8.140000e-111 411.0
22 TraesCS2A01G522500 chr6B 100.000 34 0 0 2408 2441 139416246 139416213 2.620000e-06 63.9
23 TraesCS2A01G522500 chr3D 93.471 1455 74 4 971 2405 419635664 419634211 0.000000e+00 2141.0
24 TraesCS2A01G522500 chr3D 93.402 1455 71 5 971 2405 355119177 355117728 0.000000e+00 2132.0
25 TraesCS2A01G522500 chr3D 96.471 85 3 0 2894 2978 223476104 223476188 1.180000e-29 141.0
26 TraesCS2A01G522500 chr2B 95.094 1223 36 4 971 2173 652607704 652606486 0.000000e+00 1905.0
27 TraesCS2A01G522500 chr2B 95.251 358 17 0 2536 2893 652605654 652605297 4.560000e-158 568.0
28 TraesCS2A01G522500 chr3B 95.012 1223 37 4 971 2173 741391120 741389902 0.000000e+00 1899.0
29 TraesCS2A01G522500 chr3B 96.471 85 3 0 2894 2978 317614316 317614232 1.180000e-29 141.0
30 TraesCS2A01G522500 chr2D 90.613 522 45 4 1 520 88611899 88612418 0.000000e+00 689.0
31 TraesCS2A01G522500 chr2D 82.828 99 10 5 3012 3106 469103624 469103529 7.250000e-12 82.4
32 TraesCS2A01G522500 chr6D 87.692 520 62 2 1 519 97145899 97145381 3.480000e-169 604.0
33 TraesCS2A01G522500 chr7B 91.991 437 14 3 971 1387 650233139 650232704 7.530000e-166 593.0
34 TraesCS2A01G522500 chr7B 86.990 515 65 2 1 514 745610013 745610526 2.110000e-161 579.0
35 TraesCS2A01G522500 chr7B 88.739 444 50 0 535 978 415326191 415326634 7.690000e-151 544.0
36 TraesCS2A01G522500 chr7B 84.326 319 49 1 148 466 704472872 704473189 8.490000e-81 311.0
37 TraesCS2A01G522500 chr3A 89.865 444 45 0 535 978 98513748 98513305 3.530000e-159 571.0
38 TraesCS2A01G522500 chr3A 91.560 391 30 3 2512 2902 27733206 27733593 1.290000e-148 536.0
39 TraesCS2A01G522500 chr3A 87.111 450 48 4 529 978 637957447 637957886 4.690000e-138 501.0
40 TraesCS2A01G522500 chr1A 88.444 450 52 0 529 978 177472548 177472997 7.690000e-151 544.0
41 TraesCS2A01G522500 chr1A 91.623 382 29 3 2512 2893 8169230 8169608 2.780000e-145 525.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G522500 chr2A 744803499 744806650 3151 True 5821.000000 5821 100.0000 1 3152 1 chr2A.!!$R5 3151
1 TraesCS2A01G522500 chr6A 121670451 121673176 2725 False 1022.250000 2313 94.1630 214 2893 4 chr6A.!!$F1 2679
2 TraesCS2A01G522500 chr5D 564867722 564869178 1456 False 2080.000000 2080 92.6660 968 2405 1 chr5D.!!$F3 1437
3 TraesCS2A01G522500 chr5D 409715027 409717467 2440 False 1389.500000 2213 94.1945 968 2893 2 chr5D.!!$F4 1925
4 TraesCS2A01G522500 chrUn 70174021 70175474 1453 True 2169.000000 2169 93.8140 971 2405 1 chrUn.!!$R1 1434
5 TraesCS2A01G522500 chr7D 575649080 575650536 1456 False 2158.000000 2158 93.6210 968 2405 1 chr7D.!!$F1 1437
6 TraesCS2A01G522500 chr6B 139416213 139417786 1573 True 1108.950000 2154 96.7480 971 2441 2 chr6B.!!$R2 1470
7 TraesCS2A01G522500 chr6B 707973330 707975396 2066 False 942.666667 1866 95.2110 968 2893 3 chr6B.!!$F1 1925
8 TraesCS2A01G522500 chr3D 419634211 419635664 1453 True 2141.000000 2141 93.4710 971 2405 1 chr3D.!!$R2 1434
9 TraesCS2A01G522500 chr3D 355117728 355119177 1449 True 2132.000000 2132 93.4020 971 2405 1 chr3D.!!$R1 1434
10 TraesCS2A01G522500 chr2B 652605297 652607704 2407 True 1236.500000 1905 95.1725 971 2893 2 chr2B.!!$R1 1922
11 TraesCS2A01G522500 chr3B 741389902 741391120 1218 True 1899.000000 1899 95.0120 971 2173 1 chr3B.!!$R2 1202
12 TraesCS2A01G522500 chr2D 88611899 88612418 519 False 689.000000 689 90.6130 1 520 1 chr2D.!!$F1 519
13 TraesCS2A01G522500 chr6D 97145381 97145899 518 True 604.000000 604 87.6920 1 519 1 chr6D.!!$R1 518
14 TraesCS2A01G522500 chr7B 745610013 745610526 513 False 579.000000 579 86.9900 1 514 1 chr7B.!!$F3 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.106819 AGATCCATGGTCTTGCTGCC 60.107 55.0 12.58 0.0 0.0 4.85 F
1419 1649 0.392461 GTGGCGCCTACAAGAATGGA 60.392 55.0 29.70 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2121 1.063266 ACCAACCATTTGACCAGGTGT 60.063 47.619 0.0 0.0 35.42 4.16 R
2982 4534 0.105453 AGGTGGAGTGGTCTGTGAGT 60.105 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.130312 GTTCTTGCTGATTATAACTACTATCGG 57.870 37.037 0.00 0.00 0.00 4.18
50 51 6.621613 TGCTGATTATAACTACTATCGGCTG 58.378 40.000 13.67 0.00 45.33 4.85
53 54 6.988522 TGATTATAACTACTATCGGCTGCAA 58.011 36.000 0.50 0.00 0.00 4.08
62 63 3.568007 ACTATCGGCTGCAACAAGAAAAA 59.432 39.130 0.50 0.00 0.00 1.94
66 67 2.865551 CGGCTGCAACAAGAAAAACAAT 59.134 40.909 0.50 0.00 0.00 2.71
69 70 4.571984 GGCTGCAACAAGAAAAACAATCTT 59.428 37.500 0.50 0.00 37.62 2.40
77 78 6.039781 CAAGAAAAACAATCTTGTGCAAGG 57.960 37.500 11.47 0.00 45.53 3.61
84 85 3.243636 ACAATCTTGTGCAAGGCTTTCAG 60.244 43.478 11.47 0.00 40.49 3.02
86 87 2.867624 TCTTGTGCAAGGCTTTCAGAT 58.132 42.857 11.47 0.00 38.88 2.90
88 89 3.753272 TCTTGTGCAAGGCTTTCAGATAC 59.247 43.478 11.47 0.00 38.88 2.24
89 90 2.436417 TGTGCAAGGCTTTCAGATACC 58.564 47.619 0.00 0.00 0.00 2.73
90 91 2.040278 TGTGCAAGGCTTTCAGATACCT 59.960 45.455 0.00 0.00 0.00 3.08
98 99 4.081198 AGGCTTTCAGATACCTTGTCAGAG 60.081 45.833 0.00 0.00 0.00 3.35
100 101 5.108517 GCTTTCAGATACCTTGTCAGAGAG 58.891 45.833 0.00 0.00 0.00 3.20
104 105 4.396478 TCAGATACCTTGTCAGAGAGAACG 59.604 45.833 0.00 0.00 0.00 3.95
105 106 4.396478 CAGATACCTTGTCAGAGAGAACGA 59.604 45.833 0.00 0.00 0.00 3.85
107 108 5.477291 AGATACCTTGTCAGAGAGAACGAAA 59.523 40.000 0.00 0.00 0.00 3.46
111 112 4.683781 CCTTGTCAGAGAGAACGAAAGAAG 59.316 45.833 0.00 0.00 0.00 2.85
125 126 0.663153 AAGAAGTCAACCAGCGCAAC 59.337 50.000 11.47 0.00 0.00 4.17
126 127 1.166531 AGAAGTCAACCAGCGCAACC 61.167 55.000 11.47 0.00 0.00 3.77
128 129 1.447317 AAGTCAACCAGCGCAACCAG 61.447 55.000 11.47 0.00 0.00 4.00
136 137 1.028330 CAGCGCAACCAGACCATCAT 61.028 55.000 11.47 0.00 0.00 2.45
184 185 0.170561 CTGGAAGAAGTGCATGCTGC 59.829 55.000 20.33 11.82 39.62 5.25
202 203 2.879026 CTGCATCAGACAAGATCCATGG 59.121 50.000 4.97 4.97 32.44 3.66
212 213 0.106819 AGATCCATGGTCTTGCTGCC 60.107 55.000 12.58 0.00 0.00 4.85
398 399 2.871022 CGATGGGCTTTCTGATGAAGAG 59.129 50.000 0.00 0.00 35.91 2.85
412 413 5.354767 TGATGAAGAGACCGATGAAGATTG 58.645 41.667 0.00 0.00 0.00 2.67
474 475 1.661341 CCCATGAGCACTGTCTAAGC 58.339 55.000 0.00 0.00 0.00 3.09
478 479 2.231716 TGAGCACTGTCTAAGCCCTA 57.768 50.000 0.00 0.00 0.00 3.53
483 484 3.702045 AGCACTGTCTAAGCCCTACTAAG 59.298 47.826 0.00 0.00 0.00 2.18
537 538 4.730903 GCTTCATGATGACAATGCTCACTG 60.731 45.833 12.54 0.00 0.00 3.66
578 579 4.877823 TGTCATATTGAGCCTGCTAAACTG 59.122 41.667 0.00 0.00 0.00 3.16
593 594 3.996150 AAACTGTCTCTTTGCCATGTG 57.004 42.857 0.00 0.00 0.00 3.21
625 626 0.750850 TATGGCTTCACCGCTAGGAC 59.249 55.000 0.00 0.00 43.94 3.85
710 711 5.372373 ACTCATAGCTTTGGCCTAGAAATC 58.628 41.667 3.32 0.00 39.73 2.17
773 774 4.565166 TGAAGTCTGTGTTGACGTGTTAAG 59.435 41.667 0.00 0.00 41.47 1.85
840 841 8.244494 TGTGATTCTTCTTTTCAGTATCTTCG 57.756 34.615 0.00 0.00 0.00 3.79
843 844 8.251026 TGATTCTTCTTTTCAGTATCTTCGCTA 58.749 33.333 0.00 0.00 0.00 4.26
849 850 9.647797 TTCTTTTCAGTATCTTCGCTATAAACA 57.352 29.630 0.00 0.00 0.00 2.83
850 851 9.817809 TCTTTTCAGTATCTTCGCTATAAACAT 57.182 29.630 0.00 0.00 0.00 2.71
871 974 9.777297 AAACATACATTCATTTGCTTTAACCTT 57.223 25.926 0.00 0.00 0.00 3.50
872 975 8.761575 ACATACATTCATTTGCTTTAACCTTG 57.238 30.769 0.00 0.00 0.00 3.61
874 977 5.609423 ACATTCATTTGCTTTAACCTTGCA 58.391 33.333 0.00 0.00 34.69 4.08
875 978 6.054295 ACATTCATTTGCTTTAACCTTGCAA 58.946 32.000 0.00 0.00 43.69 4.08
876 979 6.203338 ACATTCATTTGCTTTAACCTTGCAAG 59.797 34.615 19.93 19.93 45.52 4.01
887 990 2.773993 CCTTGCAAGGCCAAATCAAT 57.226 45.000 31.70 0.00 39.76 2.57
888 991 2.352388 CCTTGCAAGGCCAAATCAATG 58.648 47.619 31.70 4.57 39.76 2.82
889 992 2.027929 CCTTGCAAGGCCAAATCAATGA 60.028 45.455 31.70 0.00 39.76 2.57
890 993 3.557475 CCTTGCAAGGCCAAATCAATGAA 60.557 43.478 31.70 0.00 39.76 2.57
891 994 3.042871 TGCAAGGCCAAATCAATGAAC 57.957 42.857 5.01 0.00 0.00 3.18
892 995 2.367894 TGCAAGGCCAAATCAATGAACA 59.632 40.909 5.01 0.00 0.00 3.18
893 996 3.008157 TGCAAGGCCAAATCAATGAACAT 59.992 39.130 5.01 0.00 0.00 2.71
894 997 4.004982 GCAAGGCCAAATCAATGAACATT 58.995 39.130 5.01 0.00 0.00 2.71
895 998 4.456566 GCAAGGCCAAATCAATGAACATTT 59.543 37.500 5.01 0.00 0.00 2.32
896 999 5.618195 GCAAGGCCAAATCAATGAACATTTG 60.618 40.000 5.01 1.88 38.98 2.32
897 1000 4.004982 AGGCCAAATCAATGAACATTTGC 58.995 39.130 5.01 0.14 38.26 3.68
898 1001 4.004982 GGCCAAATCAATGAACATTTGCT 58.995 39.130 0.00 0.00 38.26 3.91
899 1002 5.046448 AGGCCAAATCAATGAACATTTGCTA 60.046 36.000 5.01 0.00 38.26 3.49
900 1003 5.292589 GGCCAAATCAATGAACATTTGCTAG 59.707 40.000 0.00 0.00 38.26 3.42
901 1004 5.220529 GCCAAATCAATGAACATTTGCTAGC 60.221 40.000 8.10 8.10 38.26 3.42
902 1005 5.870433 CCAAATCAATGAACATTTGCTAGCA 59.130 36.000 14.93 14.93 38.26 3.49
903 1006 6.537301 CCAAATCAATGAACATTTGCTAGCAT 59.463 34.615 20.13 2.09 38.26 3.79
904 1007 7.707464 CCAAATCAATGAACATTTGCTAGCATA 59.293 33.333 20.13 14.95 38.26 3.14
905 1008 9.089601 CAAATCAATGAACATTTGCTAGCATAA 57.910 29.630 20.13 15.51 34.18 1.90
906 1009 9.826574 AAATCAATGAACATTTGCTAGCATAAT 57.173 25.926 20.13 17.00 0.00 1.28
941 1044 8.422577 ACTATTTGCCCTTTTTACTCAATTCT 57.577 30.769 0.00 0.00 0.00 2.40
942 1045 8.523658 ACTATTTGCCCTTTTTACTCAATTCTC 58.476 33.333 0.00 0.00 0.00 2.87
943 1046 5.722021 TTGCCCTTTTTACTCAATTCTCC 57.278 39.130 0.00 0.00 0.00 3.71
944 1047 4.998051 TGCCCTTTTTACTCAATTCTCCT 58.002 39.130 0.00 0.00 0.00 3.69
945 1048 5.393866 TGCCCTTTTTACTCAATTCTCCTT 58.606 37.500 0.00 0.00 0.00 3.36
946 1049 5.243730 TGCCCTTTTTACTCAATTCTCCTTG 59.756 40.000 0.00 0.00 0.00 3.61
947 1050 5.243954 GCCCTTTTTACTCAATTCTCCTTGT 59.756 40.000 0.00 0.00 0.00 3.16
948 1051 6.239317 GCCCTTTTTACTCAATTCTCCTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
949 1052 7.371159 CCCTTTTTACTCAATTCTCCTTGTTC 58.629 38.462 0.00 0.00 0.00 3.18
950 1053 7.014230 CCCTTTTTACTCAATTCTCCTTGTTCA 59.986 37.037 0.00 0.00 0.00 3.18
951 1054 8.579863 CCTTTTTACTCAATTCTCCTTGTTCAT 58.420 33.333 0.00 0.00 0.00 2.57
952 1055 9.971922 CTTTTTACTCAATTCTCCTTGTTCATT 57.028 29.630 0.00 0.00 0.00 2.57
955 1058 6.749923 ACTCAATTCTCCTTGTTCATTAGC 57.250 37.500 0.00 0.00 0.00 3.09
956 1059 6.240894 ACTCAATTCTCCTTGTTCATTAGCA 58.759 36.000 0.00 0.00 0.00 3.49
957 1060 6.373774 ACTCAATTCTCCTTGTTCATTAGCAG 59.626 38.462 0.00 0.00 0.00 4.24
958 1061 6.475504 TCAATTCTCCTTGTTCATTAGCAGA 58.524 36.000 0.00 0.00 0.00 4.26
959 1062 7.114754 TCAATTCTCCTTGTTCATTAGCAGAT 58.885 34.615 0.00 0.00 0.00 2.90
960 1063 7.281774 TCAATTCTCCTTGTTCATTAGCAGATC 59.718 37.037 0.00 0.00 0.00 2.75
961 1064 5.682234 TCTCCTTGTTCATTAGCAGATCA 57.318 39.130 0.00 0.00 0.00 2.92
962 1065 6.053632 TCTCCTTGTTCATTAGCAGATCAA 57.946 37.500 0.00 0.00 0.00 2.57
963 1066 6.475504 TCTCCTTGTTCATTAGCAGATCAAA 58.524 36.000 0.00 0.00 0.00 2.69
964 1067 6.942005 TCTCCTTGTTCATTAGCAGATCAAAA 59.058 34.615 0.00 0.00 0.00 2.44
965 1068 7.448161 TCTCCTTGTTCATTAGCAGATCAAAAA 59.552 33.333 0.00 0.00 0.00 1.94
966 1069 7.370383 TCCTTGTTCATTAGCAGATCAAAAAC 58.630 34.615 0.00 0.00 0.00 2.43
967 1070 7.014134 TCCTTGTTCATTAGCAGATCAAAAACA 59.986 33.333 0.00 0.00 0.00 2.83
968 1071 7.816031 CCTTGTTCATTAGCAGATCAAAAACAT 59.184 33.333 0.00 0.00 0.00 2.71
969 1072 9.844790 CTTGTTCATTAGCAGATCAAAAACATA 57.155 29.630 0.00 0.00 0.00 2.29
1054 1157 1.381076 GGTTCCCCGGGATCAACAA 59.619 57.895 26.32 1.08 0.00 2.83
1120 1223 6.061441 TCACCAGTTGTAGTTCATTCATTGT 58.939 36.000 0.00 0.00 0.00 2.71
1277 1400 8.684386 TTTGAATGAGGTGATGTTGTAGTAAA 57.316 30.769 0.00 0.00 0.00 2.01
1419 1649 0.392461 GTGGCGCCTACAAGAATGGA 60.392 55.000 29.70 0.00 0.00 3.41
1492 1722 5.707298 CCTCACACTCAATCAAACTACCATT 59.293 40.000 0.00 0.00 0.00 3.16
1565 1795 6.929049 AGAAATTTTACCCTTACTTTGCTTGC 59.071 34.615 0.00 0.00 0.00 4.01
1727 1957 4.578871 TCTTCTTTGGAATTGCTCGATGA 58.421 39.130 0.00 0.00 0.00 2.92
1799 2030 1.074752 GCTGAAGACAGTGCTGCTAC 58.925 55.000 0.00 0.00 45.04 3.58
2442 3548 4.299155 TGTTCTCTCTGTAGTCAAAAGCG 58.701 43.478 0.00 0.00 0.00 4.68
2444 3550 3.154710 TCTCTCTGTAGTCAAAAGCGGA 58.845 45.455 0.00 0.00 0.00 5.54
2571 4123 8.924511 TTCCTGAAAACTATGACTCAAGAAAT 57.075 30.769 0.00 0.00 0.00 2.17
2591 4143 8.071177 AGAAATAAGCTTCCTTTTATGCATGT 57.929 30.769 10.16 0.00 32.47 3.21
2717 4269 5.931724 ACGATCATCAACAACAACTACATCA 59.068 36.000 0.00 0.00 0.00 3.07
2764 4316 7.611467 TCCTACATGACTTAGTGCATCATTTTT 59.389 33.333 0.00 0.00 30.58 1.94
2778 4330 9.525409 GTGCATCATTTTTAATCTTATCTGCTT 57.475 29.630 0.00 0.00 0.00 3.91
2893 4445 1.146358 GCGCAACGGGTCATCTAGTC 61.146 60.000 0.30 0.00 0.00 2.59
2894 4446 0.527817 CGCAACGGGTCATCTAGTCC 60.528 60.000 0.00 0.00 0.00 3.85
2895 4447 0.824759 GCAACGGGTCATCTAGTCCT 59.175 55.000 0.00 0.00 0.00 3.85
2896 4448 1.471676 GCAACGGGTCATCTAGTCCTG 60.472 57.143 0.00 0.00 37.75 3.86
2897 4449 1.825474 CAACGGGTCATCTAGTCCTGT 59.175 52.381 0.00 0.00 45.35 4.00
2898 4450 1.765230 ACGGGTCATCTAGTCCTGTC 58.235 55.000 0.00 0.00 40.42 3.51
2899 4451 1.005569 ACGGGTCATCTAGTCCTGTCA 59.994 52.381 0.00 0.00 40.42 3.58
2900 4452 2.100197 CGGGTCATCTAGTCCTGTCAA 58.900 52.381 0.00 0.00 0.00 3.18
2901 4453 2.496070 CGGGTCATCTAGTCCTGTCAAA 59.504 50.000 0.00 0.00 0.00 2.69
2902 4454 3.676324 CGGGTCATCTAGTCCTGTCAAAC 60.676 52.174 0.00 0.00 0.00 2.93
2903 4455 3.512680 GGTCATCTAGTCCTGTCAAACG 58.487 50.000 0.00 0.00 0.00 3.60
2904 4456 3.056749 GGTCATCTAGTCCTGTCAAACGT 60.057 47.826 0.00 0.00 0.00 3.99
2905 4457 4.557205 GTCATCTAGTCCTGTCAAACGTT 58.443 43.478 0.00 0.00 0.00 3.99
2906 4458 4.386049 GTCATCTAGTCCTGTCAAACGTTG 59.614 45.833 0.00 0.00 0.00 4.10
2907 4459 4.279922 TCATCTAGTCCTGTCAAACGTTGA 59.720 41.667 0.00 0.00 37.33 3.18
2914 4466 3.412061 TCAAACGTTGACCCACGC 58.588 55.556 0.00 0.00 44.37 5.34
2915 4467 1.449778 TCAAACGTTGACCCACGCA 60.450 52.632 0.00 0.00 44.37 5.24
2916 4468 1.010125 CAAACGTTGACCCACGCAG 60.010 57.895 0.00 0.00 44.37 5.18
2917 4469 2.830285 AAACGTTGACCCACGCAGC 61.830 57.895 0.00 0.00 44.37 5.25
2918 4470 3.750373 AACGTTGACCCACGCAGCT 62.750 57.895 0.00 0.00 44.37 4.24
2919 4471 2.972505 CGTTGACCCACGCAGCTT 60.973 61.111 0.00 0.00 32.43 3.74
2920 4472 2.542907 CGTTGACCCACGCAGCTTT 61.543 57.895 0.00 0.00 32.43 3.51
2921 4473 1.282875 GTTGACCCACGCAGCTTTC 59.717 57.895 0.00 0.00 0.00 2.62
2922 4474 1.153066 TTGACCCACGCAGCTTTCA 60.153 52.632 0.00 0.00 0.00 2.69
2923 4475 1.444119 TTGACCCACGCAGCTTTCAC 61.444 55.000 0.00 0.00 0.00 3.18
2924 4476 1.891919 GACCCACGCAGCTTTCACA 60.892 57.895 0.00 0.00 0.00 3.58
2925 4477 1.228245 ACCCACGCAGCTTTCACAT 60.228 52.632 0.00 0.00 0.00 3.21
2926 4478 1.237285 ACCCACGCAGCTTTCACATC 61.237 55.000 0.00 0.00 0.00 3.06
2927 4479 1.236616 CCCACGCAGCTTTCACATCA 61.237 55.000 0.00 0.00 0.00 3.07
2928 4480 0.110056 CCACGCAGCTTTCACATCAC 60.110 55.000 0.00 0.00 0.00 3.06
2929 4481 0.110056 CACGCAGCTTTCACATCACC 60.110 55.000 0.00 0.00 0.00 4.02
2930 4482 1.133253 CGCAGCTTTCACATCACCG 59.867 57.895 0.00 0.00 0.00 4.94
2931 4483 1.291184 CGCAGCTTTCACATCACCGA 61.291 55.000 0.00 0.00 0.00 4.69
2932 4484 1.089920 GCAGCTTTCACATCACCGAT 58.910 50.000 0.00 0.00 0.00 4.18
2933 4485 1.470098 GCAGCTTTCACATCACCGATT 59.530 47.619 0.00 0.00 0.00 3.34
2934 4486 2.476854 GCAGCTTTCACATCACCGATTC 60.477 50.000 0.00 0.00 0.00 2.52
2935 4487 2.743664 CAGCTTTCACATCACCGATTCA 59.256 45.455 0.00 0.00 0.00 2.57
2936 4488 2.744202 AGCTTTCACATCACCGATTCAC 59.256 45.455 0.00 0.00 0.00 3.18
2937 4489 2.159517 GCTTTCACATCACCGATTCACC 60.160 50.000 0.00 0.00 0.00 4.02
2938 4490 2.849294 TTCACATCACCGATTCACCA 57.151 45.000 0.00 0.00 0.00 4.17
2939 4491 2.385013 TCACATCACCGATTCACCAG 57.615 50.000 0.00 0.00 0.00 4.00
2940 4492 1.066215 TCACATCACCGATTCACCAGG 60.066 52.381 0.00 0.00 0.00 4.45
2941 4493 1.066215 CACATCACCGATTCACCAGGA 60.066 52.381 0.00 0.00 0.00 3.86
2942 4494 1.208052 ACATCACCGATTCACCAGGAG 59.792 52.381 0.00 0.00 0.00 3.69
2943 4495 0.179000 ATCACCGATTCACCAGGAGC 59.821 55.000 0.00 0.00 0.00 4.70
2944 4496 1.450312 CACCGATTCACCAGGAGCC 60.450 63.158 0.00 0.00 0.00 4.70
2945 4497 1.613630 ACCGATTCACCAGGAGCCT 60.614 57.895 0.00 0.00 0.00 4.58
2946 4498 1.144936 CCGATTCACCAGGAGCCTC 59.855 63.158 0.00 0.00 0.00 4.70
2947 4499 1.617018 CCGATTCACCAGGAGCCTCA 61.617 60.000 0.00 0.00 0.00 3.86
2948 4500 0.460987 CGATTCACCAGGAGCCTCAC 60.461 60.000 0.00 0.00 0.00 3.51
2949 4501 0.615331 GATTCACCAGGAGCCTCACA 59.385 55.000 0.00 0.00 0.00 3.58
2950 4502 1.003580 GATTCACCAGGAGCCTCACAA 59.996 52.381 0.00 0.00 0.00 3.33
2951 4503 1.067295 TTCACCAGGAGCCTCACAAT 58.933 50.000 0.00 0.00 0.00 2.71
2952 4504 0.615331 TCACCAGGAGCCTCACAATC 59.385 55.000 0.00 0.00 0.00 2.67
2953 4505 0.393537 CACCAGGAGCCTCACAATCC 60.394 60.000 0.00 0.00 0.00 3.01
2954 4506 0.548682 ACCAGGAGCCTCACAATCCT 60.549 55.000 0.00 0.00 44.41 3.24
2956 4508 2.305095 AGGAGCCTCACAATCCTGG 58.695 57.895 0.00 0.00 41.95 4.45
2957 4509 1.225704 GGAGCCTCACAATCCTGGG 59.774 63.158 0.00 0.00 0.00 4.45
2958 4510 1.274703 GGAGCCTCACAATCCTGGGA 61.275 60.000 0.00 0.00 32.65 4.37
2964 4516 3.191078 CTCACAATCCTGGGAGCTTAG 57.809 52.381 0.00 0.00 45.96 2.18
2965 4517 2.768527 CTCACAATCCTGGGAGCTTAGA 59.231 50.000 0.00 0.00 45.96 2.10
2966 4518 3.181329 TCACAATCCTGGGAGCTTAGAA 58.819 45.455 0.00 0.00 29.18 2.10
2967 4519 3.782523 TCACAATCCTGGGAGCTTAGAAT 59.217 43.478 0.00 0.00 29.18 2.40
2968 4520 4.228210 TCACAATCCTGGGAGCTTAGAATT 59.772 41.667 0.00 0.00 29.18 2.17
2969 4521 4.952335 CACAATCCTGGGAGCTTAGAATTT 59.048 41.667 0.00 0.00 0.00 1.82
2970 4522 4.952335 ACAATCCTGGGAGCTTAGAATTTG 59.048 41.667 0.00 0.00 0.00 2.32
2971 4523 4.870021 ATCCTGGGAGCTTAGAATTTGT 57.130 40.909 0.00 0.00 0.00 2.83
2972 4524 5.975988 ATCCTGGGAGCTTAGAATTTGTA 57.024 39.130 0.00 0.00 0.00 2.41
2973 4525 5.099042 TCCTGGGAGCTTAGAATTTGTAC 57.901 43.478 0.00 0.00 0.00 2.90
2974 4526 4.783227 TCCTGGGAGCTTAGAATTTGTACT 59.217 41.667 0.00 0.00 0.00 2.73
2975 4527 4.878397 CCTGGGAGCTTAGAATTTGTACTG 59.122 45.833 0.00 0.00 0.00 2.74
2976 4528 5.338381 CCTGGGAGCTTAGAATTTGTACTGA 60.338 44.000 0.00 0.00 0.00 3.41
2977 4529 6.313519 TGGGAGCTTAGAATTTGTACTGAT 57.686 37.500 0.00 0.00 0.00 2.90
2978 4530 6.115446 TGGGAGCTTAGAATTTGTACTGATG 58.885 40.000 0.00 0.00 0.00 3.07
2979 4531 6.116126 GGGAGCTTAGAATTTGTACTGATGT 58.884 40.000 0.00 0.00 0.00 3.06
2980 4532 6.037610 GGGAGCTTAGAATTTGTACTGATGTG 59.962 42.308 0.00 0.00 0.00 3.21
2981 4533 6.595716 GGAGCTTAGAATTTGTACTGATGTGT 59.404 38.462 0.00 0.00 0.00 3.72
2982 4534 7.764443 GGAGCTTAGAATTTGTACTGATGTGTA 59.236 37.037 0.00 0.00 0.00 2.90
2983 4535 8.480643 AGCTTAGAATTTGTACTGATGTGTAC 57.519 34.615 0.00 0.00 42.10 2.90
2984 4536 8.314751 AGCTTAGAATTTGTACTGATGTGTACT 58.685 33.333 6.41 0.00 42.22 2.73
2985 4537 8.596380 GCTTAGAATTTGTACTGATGTGTACTC 58.404 37.037 6.41 0.00 42.22 2.59
2986 4538 9.639601 CTTAGAATTTGTACTGATGTGTACTCA 57.360 33.333 0.00 0.00 42.22 3.41
2987 4539 7.891183 AGAATTTGTACTGATGTGTACTCAC 57.109 36.000 0.00 0.00 42.22 3.51
2997 4549 2.726832 GTGTACTCACAGACCACTCC 57.273 55.000 0.00 0.00 43.37 3.85
2998 4550 1.961394 GTGTACTCACAGACCACTCCA 59.039 52.381 0.00 0.00 43.37 3.86
2999 4551 1.961394 TGTACTCACAGACCACTCCAC 59.039 52.381 0.00 0.00 0.00 4.02
3000 4552 1.272769 GTACTCACAGACCACTCCACC 59.727 57.143 0.00 0.00 0.00 4.61
3001 4553 0.105453 ACTCACAGACCACTCCACCT 60.105 55.000 0.00 0.00 0.00 4.00
3002 4554 1.147191 ACTCACAGACCACTCCACCTA 59.853 52.381 0.00 0.00 0.00 3.08
3003 4555 2.225394 ACTCACAGACCACTCCACCTAT 60.225 50.000 0.00 0.00 0.00 2.57
3004 4556 3.011369 ACTCACAGACCACTCCACCTATA 59.989 47.826 0.00 0.00 0.00 1.31
3005 4557 3.632333 TCACAGACCACTCCACCTATAG 58.368 50.000 0.00 0.00 0.00 1.31
3006 4558 3.011369 TCACAGACCACTCCACCTATAGT 59.989 47.826 0.00 0.00 0.00 2.12
3007 4559 4.228895 TCACAGACCACTCCACCTATAGTA 59.771 45.833 0.00 0.00 0.00 1.82
3008 4560 4.338682 CACAGACCACTCCACCTATAGTAC 59.661 50.000 0.00 0.00 0.00 2.73
3009 4561 4.230041 ACAGACCACTCCACCTATAGTACT 59.770 45.833 0.00 0.00 0.00 2.73
3010 4562 5.202004 CAGACCACTCCACCTATAGTACTT 58.798 45.833 0.00 0.00 0.00 2.24
3011 4563 5.067936 CAGACCACTCCACCTATAGTACTTG 59.932 48.000 0.00 0.00 0.00 3.16
3012 4564 4.287552 ACCACTCCACCTATAGTACTTGG 58.712 47.826 0.00 1.90 0.00 3.61
3013 4565 4.264713 ACCACTCCACCTATAGTACTTGGT 60.265 45.833 0.00 4.86 0.00 3.67
3014 4566 4.099573 CCACTCCACCTATAGTACTTGGTG 59.900 50.000 23.93 23.93 46.74 4.17
3019 4571 5.263968 CACCTATAGTACTTGGTGGACAG 57.736 47.826 23.50 7.78 44.33 3.51
3020 4572 4.099573 CACCTATAGTACTTGGTGGACAGG 59.900 50.000 23.50 8.58 44.33 4.00
3021 4573 3.641906 CCTATAGTACTTGGTGGACAGGG 59.358 52.174 0.00 0.00 0.00 4.45
3022 4574 1.946984 TAGTACTTGGTGGACAGGGG 58.053 55.000 0.00 0.00 0.00 4.79
3023 4575 0.840722 AGTACTTGGTGGACAGGGGG 60.841 60.000 0.00 0.00 0.00 5.40
3024 4576 2.228480 TACTTGGTGGACAGGGGGC 61.228 63.158 0.00 0.00 0.00 5.80
3025 4577 2.993038 TACTTGGTGGACAGGGGGCA 62.993 60.000 0.00 0.00 0.00 5.36
3026 4578 2.863484 TTGGTGGACAGGGGGCAT 60.863 61.111 0.00 0.00 0.00 4.40
3027 4579 2.445492 CTTGGTGGACAGGGGGCATT 62.445 60.000 0.00 0.00 0.00 3.56
3028 4580 2.029892 TTGGTGGACAGGGGGCATTT 62.030 55.000 0.00 0.00 0.00 2.32
3029 4581 1.984026 GGTGGACAGGGGGCATTTG 60.984 63.158 0.00 0.00 0.00 2.32
3030 4582 2.283821 TGGACAGGGGGCATTTGC 60.284 61.111 0.00 0.00 41.14 3.68
3048 4600 4.410400 CCTCCCCCGGCACTTGAC 62.410 72.222 0.00 0.00 0.00 3.18
3049 4601 4.410400 CTCCCCCGGCACTTGACC 62.410 72.222 0.00 0.00 0.00 4.02
3053 4605 4.619227 CCCGGCACTTGACCACGT 62.619 66.667 0.00 0.00 0.00 4.49
3054 4606 2.590575 CCGGCACTTGACCACGTT 60.591 61.111 0.00 0.00 0.00 3.99
3055 4607 2.631428 CGGCACTTGACCACGTTG 59.369 61.111 0.00 0.00 0.00 4.10
3056 4608 2.177580 CGGCACTTGACCACGTTGT 61.178 57.895 0.00 0.00 0.00 3.32
3057 4609 0.876777 CGGCACTTGACCACGTTGTA 60.877 55.000 0.00 0.00 0.00 2.41
3058 4610 1.519408 GGCACTTGACCACGTTGTAT 58.481 50.000 0.00 0.00 0.00 2.29
3059 4611 1.877443 GGCACTTGACCACGTTGTATT 59.123 47.619 0.00 0.00 0.00 1.89
3060 4612 2.292292 GGCACTTGACCACGTTGTATTT 59.708 45.455 0.00 0.00 0.00 1.40
3061 4613 3.499157 GGCACTTGACCACGTTGTATTTA 59.501 43.478 0.00 0.00 0.00 1.40
3062 4614 4.155280 GGCACTTGACCACGTTGTATTTAT 59.845 41.667 0.00 0.00 0.00 1.40
3063 4615 5.335348 GGCACTTGACCACGTTGTATTTATT 60.335 40.000 0.00 0.00 0.00 1.40
3064 4616 6.146898 GCACTTGACCACGTTGTATTTATTT 58.853 36.000 0.00 0.00 0.00 1.40
3065 4617 7.299586 GCACTTGACCACGTTGTATTTATTTA 58.700 34.615 0.00 0.00 0.00 1.40
3066 4618 7.804129 GCACTTGACCACGTTGTATTTATTTAA 59.196 33.333 0.00 0.00 0.00 1.52
3067 4619 9.834628 CACTTGACCACGTTGTATTTATTTAAT 57.165 29.630 0.00 0.00 0.00 1.40
3134 4686 6.801539 ATTAACTTTGTCTCTGATTTGCGA 57.198 33.333 0.00 0.00 0.00 5.10
3135 4687 4.739046 AACTTTGTCTCTGATTTGCGAG 57.261 40.909 0.00 0.00 0.00 5.03
3136 4688 3.070018 ACTTTGTCTCTGATTTGCGAGG 58.930 45.455 0.00 0.00 0.00 4.63
3137 4689 1.442769 TTGTCTCTGATTTGCGAGGC 58.557 50.000 0.00 0.00 32.67 4.70
3138 4690 0.391661 TGTCTCTGATTTGCGAGGCC 60.392 55.000 0.00 0.00 31.03 5.19
3139 4691 0.107945 GTCTCTGATTTGCGAGGCCT 60.108 55.000 3.86 3.86 0.00 5.19
3140 4692 0.107993 TCTCTGATTTGCGAGGCCTG 60.108 55.000 12.00 3.42 0.00 4.85
3141 4693 1.712977 CTCTGATTTGCGAGGCCTGC 61.713 60.000 12.00 15.54 0.00 4.85
3142 4694 2.033911 TGATTTGCGAGGCCTGCA 59.966 55.556 21.35 21.35 41.38 4.41
3143 4695 1.378911 TGATTTGCGAGGCCTGCAT 60.379 52.632 24.38 14.37 42.84 3.96
3144 4696 0.966875 TGATTTGCGAGGCCTGCATT 60.967 50.000 24.38 17.14 42.84 3.56
3145 4697 0.526954 GATTTGCGAGGCCTGCATTG 60.527 55.000 24.38 6.04 42.84 2.82
3146 4698 1.952102 ATTTGCGAGGCCTGCATTGG 61.952 55.000 24.38 0.00 42.84 3.16
3147 4699 3.565961 TTGCGAGGCCTGCATTGGA 62.566 57.895 24.38 11.42 42.84 3.53
3148 4700 2.517875 GCGAGGCCTGCATTGGAT 60.518 61.111 12.00 0.00 0.00 3.41
3149 4701 2.842256 GCGAGGCCTGCATTGGATG 61.842 63.158 12.00 0.00 0.00 3.51
3150 4702 2.191513 CGAGGCCTGCATTGGATGG 61.192 63.158 12.00 0.00 0.00 3.51
3151 4703 2.443390 AGGCCTGCATTGGATGGC 60.443 61.111 3.11 3.86 44.22 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.707440 TCAGCAAGAACCTTGTTTTCATTA 57.293 33.333 8.29 0.00 0.00 1.90
47 48 5.495502 CAAGATTGTTTTTCTTGTTGCAGC 58.504 37.500 5.48 0.00 43.23 5.25
62 63 2.694628 TGAAAGCCTTGCACAAGATTGT 59.305 40.909 11.94 0.00 43.36 2.71
66 67 2.346766 TCTGAAAGCCTTGCACAAGA 57.653 45.000 11.94 0.00 40.79 3.02
69 70 2.040278 AGGTATCTGAAAGCCTTGCACA 59.960 45.455 0.00 0.00 0.00 4.57
70 71 2.716217 AGGTATCTGAAAGCCTTGCAC 58.284 47.619 0.00 0.00 0.00 4.57
77 78 5.078411 TCTCTGACAAGGTATCTGAAAGC 57.922 43.478 0.00 0.00 0.00 3.51
84 85 4.966965 TCGTTCTCTCTGACAAGGTATC 57.033 45.455 0.00 0.00 0.00 2.24
86 87 4.825634 TCTTTCGTTCTCTCTGACAAGGTA 59.174 41.667 0.00 0.00 0.00 3.08
88 89 4.244425 TCTTTCGTTCTCTCTGACAAGG 57.756 45.455 0.00 0.00 0.00 3.61
89 90 5.285651 ACTTCTTTCGTTCTCTCTGACAAG 58.714 41.667 0.00 0.00 0.00 3.16
90 91 5.163550 TGACTTCTTTCGTTCTCTCTGACAA 60.164 40.000 0.00 0.00 0.00 3.18
94 95 4.446051 GGTTGACTTCTTTCGTTCTCTCTG 59.554 45.833 0.00 0.00 0.00 3.35
98 99 3.059529 GCTGGTTGACTTCTTTCGTTCTC 60.060 47.826 0.00 0.00 0.00 2.87
100 101 2.348591 CGCTGGTTGACTTCTTTCGTTC 60.349 50.000 0.00 0.00 0.00 3.95
104 105 0.944386 TGCGCTGGTTGACTTCTTTC 59.056 50.000 9.73 0.00 0.00 2.62
105 106 1.065551 GTTGCGCTGGTTGACTTCTTT 59.934 47.619 9.73 0.00 0.00 2.52
107 108 1.166531 GGTTGCGCTGGTTGACTTCT 61.167 55.000 9.73 0.00 0.00 2.85
111 112 1.891919 TCTGGTTGCGCTGGTTGAC 60.892 57.895 9.73 0.00 0.00 3.18
136 137 3.380637 GGACGCCTCTTTAGTCATCTGTA 59.619 47.826 0.00 0.00 36.68 2.74
147 148 3.199946 TCCAGATAATTGGACGCCTCTTT 59.800 43.478 0.00 0.00 42.24 2.52
153 154 4.034510 CACTTCTTCCAGATAATTGGACGC 59.965 45.833 0.00 0.00 46.61 5.19
154 155 4.034510 GCACTTCTTCCAGATAATTGGACG 59.965 45.833 0.00 0.00 46.61 4.79
184 185 4.418973 AGACCATGGATCTTGTCTGATG 57.581 45.455 21.47 0.00 36.74 3.07
202 203 0.606401 TAAGGCAGTGGCAGCAAGAC 60.606 55.000 20.04 0.00 43.71 3.01
212 213 0.392193 CAGCAGGGTCTAAGGCAGTG 60.392 60.000 0.00 0.00 0.00 3.66
398 399 2.564771 TGATGGCAATCTTCATCGGTC 58.435 47.619 2.00 0.00 41.78 4.79
412 413 3.252701 GTCATCATCCATGTCTTGATGGC 59.747 47.826 20.62 17.77 44.34 4.40
519 520 3.682696 ACACAGTGAGCATTGTCATCAT 58.317 40.909 7.81 0.00 0.00 2.45
537 538 0.179073 CACTCATGGGGATCGGACAC 60.179 60.000 0.00 0.00 0.00 3.67
578 579 2.095364 CAGCTTCACATGGCAAAGAGAC 60.095 50.000 0.00 0.00 0.00 3.36
593 594 4.802876 GAAGCCATACATACACAGCTTC 57.197 45.455 6.78 6.78 46.38 3.86
625 626 2.085262 CAGCAGACACAGAGACGCG 61.085 63.158 3.53 3.53 0.00 6.01
629 630 2.988010 AAACACAGCAGACACAGAGA 57.012 45.000 0.00 0.00 0.00 3.10
631 632 3.384789 AGACTAAACACAGCAGACACAGA 59.615 43.478 0.00 0.00 0.00 3.41
710 711 7.118971 CCAGAGTCAAGTTCAGAAAGGATAAAG 59.881 40.741 0.00 0.00 0.00 1.85
845 846 9.777297 AAGGTTAAAGCAAATGAATGTATGTTT 57.223 25.926 0.00 0.00 0.00 2.83
846 847 9.206870 CAAGGTTAAAGCAAATGAATGTATGTT 57.793 29.630 0.00 0.00 0.00 2.71
848 849 7.331440 TGCAAGGTTAAAGCAAATGAATGTATG 59.669 33.333 0.00 0.00 34.97 2.39
849 850 7.385267 TGCAAGGTTAAAGCAAATGAATGTAT 58.615 30.769 0.00 0.00 34.97 2.29
850 851 6.753180 TGCAAGGTTAAAGCAAATGAATGTA 58.247 32.000 0.00 0.00 34.97 2.29
851 852 5.609423 TGCAAGGTTAAAGCAAATGAATGT 58.391 33.333 0.00 0.00 34.97 2.71
852 853 6.347888 CCTTGCAAGGTTAAAGCAAATGAATG 60.348 38.462 33.46 4.92 46.30 2.67
853 854 5.702209 CCTTGCAAGGTTAAAGCAAATGAAT 59.298 36.000 33.46 0.00 46.30 2.57
871 974 2.367894 TGTTCATTGATTTGGCCTTGCA 59.632 40.909 3.32 0.00 0.00 4.08
872 975 3.042871 TGTTCATTGATTTGGCCTTGC 57.957 42.857 3.32 0.00 0.00 4.01
874 977 4.456566 GCAAATGTTCATTGATTTGGCCTT 59.543 37.500 3.32 0.00 39.14 4.35
875 978 4.004982 GCAAATGTTCATTGATTTGGCCT 58.995 39.130 3.32 0.00 39.14 5.19
876 979 4.004982 AGCAAATGTTCATTGATTTGGCC 58.995 39.130 11.30 0.00 39.14 5.36
877 980 5.220529 GCTAGCAAATGTTCATTGATTTGGC 60.221 40.000 10.63 5.14 39.14 4.52
879 982 6.954616 TGCTAGCAAATGTTCATTGATTTG 57.045 33.333 16.84 6.79 40.87 2.32
915 1018 8.870116 AGAATTGAGTAAAAAGGGCAAATAGTT 58.130 29.630 0.00 0.00 0.00 2.24
916 1019 8.422577 AGAATTGAGTAAAAAGGGCAAATAGT 57.577 30.769 0.00 0.00 0.00 2.12
917 1020 7.976175 GGAGAATTGAGTAAAAAGGGCAAATAG 59.024 37.037 0.00 0.00 0.00 1.73
918 1021 7.673926 AGGAGAATTGAGTAAAAAGGGCAAATA 59.326 33.333 0.00 0.00 0.00 1.40
919 1022 6.498303 AGGAGAATTGAGTAAAAAGGGCAAAT 59.502 34.615 0.00 0.00 0.00 2.32
920 1023 5.838521 AGGAGAATTGAGTAAAAAGGGCAAA 59.161 36.000 0.00 0.00 0.00 3.68
921 1024 5.393866 AGGAGAATTGAGTAAAAAGGGCAA 58.606 37.500 0.00 0.00 0.00 4.52
922 1025 4.998051 AGGAGAATTGAGTAAAAAGGGCA 58.002 39.130 0.00 0.00 0.00 5.36
923 1026 5.243954 ACAAGGAGAATTGAGTAAAAAGGGC 59.756 40.000 0.00 0.00 34.20 5.19
924 1027 6.901081 ACAAGGAGAATTGAGTAAAAAGGG 57.099 37.500 0.00 0.00 34.20 3.95
925 1028 7.940850 TGAACAAGGAGAATTGAGTAAAAAGG 58.059 34.615 0.00 0.00 34.20 3.11
926 1029 9.971922 AATGAACAAGGAGAATTGAGTAAAAAG 57.028 29.630 0.00 0.00 34.20 2.27
929 1032 8.730680 GCTAATGAACAAGGAGAATTGAGTAAA 58.269 33.333 0.00 0.00 34.20 2.01
930 1033 7.882791 TGCTAATGAACAAGGAGAATTGAGTAA 59.117 33.333 0.00 0.00 34.20 2.24
931 1034 7.394016 TGCTAATGAACAAGGAGAATTGAGTA 58.606 34.615 0.00 0.00 34.20 2.59
932 1035 6.240894 TGCTAATGAACAAGGAGAATTGAGT 58.759 36.000 0.00 0.00 34.20 3.41
933 1036 6.596888 TCTGCTAATGAACAAGGAGAATTGAG 59.403 38.462 0.00 0.00 37.27 3.02
934 1037 6.475504 TCTGCTAATGAACAAGGAGAATTGA 58.524 36.000 0.00 0.00 37.27 2.57
935 1038 6.748333 TCTGCTAATGAACAAGGAGAATTG 57.252 37.500 0.00 0.00 37.27 2.32
936 1039 7.114754 TGATCTGCTAATGAACAAGGAGAATT 58.885 34.615 0.00 0.00 42.46 2.17
937 1040 6.656902 TGATCTGCTAATGAACAAGGAGAAT 58.343 36.000 0.00 0.00 42.46 2.40
938 1041 6.053632 TGATCTGCTAATGAACAAGGAGAA 57.946 37.500 0.00 0.00 42.46 2.87
939 1042 5.682234 TGATCTGCTAATGAACAAGGAGA 57.318 39.130 0.00 0.00 43.20 3.71
940 1043 6.748333 TTTGATCTGCTAATGAACAAGGAG 57.252 37.500 0.00 0.00 30.20 3.69
941 1044 7.014134 TGTTTTTGATCTGCTAATGAACAAGGA 59.986 33.333 0.00 0.00 30.20 3.36
942 1045 7.147312 TGTTTTTGATCTGCTAATGAACAAGG 58.853 34.615 0.00 0.00 30.20 3.61
943 1046 8.752766 ATGTTTTTGATCTGCTAATGAACAAG 57.247 30.769 0.00 0.00 30.20 3.16
944 1047 9.624697 GTATGTTTTTGATCTGCTAATGAACAA 57.375 29.630 0.00 0.00 0.00 2.83
945 1048 8.243426 GGTATGTTTTTGATCTGCTAATGAACA 58.757 33.333 0.00 0.00 0.00 3.18
946 1049 8.462016 AGGTATGTTTTTGATCTGCTAATGAAC 58.538 33.333 0.00 0.00 0.00 3.18
947 1050 8.579850 AGGTATGTTTTTGATCTGCTAATGAA 57.420 30.769 0.00 0.00 0.00 2.57
948 1051 8.049117 AGAGGTATGTTTTTGATCTGCTAATGA 58.951 33.333 0.00 0.00 0.00 2.57
949 1052 8.218338 AGAGGTATGTTTTTGATCTGCTAATG 57.782 34.615 0.00 0.00 0.00 1.90
950 1053 8.814038 AAGAGGTATGTTTTTGATCTGCTAAT 57.186 30.769 0.00 0.00 0.00 1.73
951 1054 7.882791 TGAAGAGGTATGTTTTTGATCTGCTAA 59.117 33.333 0.00 0.00 0.00 3.09
952 1055 7.394016 TGAAGAGGTATGTTTTTGATCTGCTA 58.606 34.615 0.00 0.00 0.00 3.49
953 1056 6.240894 TGAAGAGGTATGTTTTTGATCTGCT 58.759 36.000 0.00 0.00 0.00 4.24
954 1057 6.500684 TGAAGAGGTATGTTTTTGATCTGC 57.499 37.500 0.00 0.00 0.00 4.26
955 1058 8.954350 AGATTGAAGAGGTATGTTTTTGATCTG 58.046 33.333 0.00 0.00 0.00 2.90
956 1059 9.171877 GAGATTGAAGAGGTATGTTTTTGATCT 57.828 33.333 0.00 0.00 0.00 2.75
957 1060 8.950210 TGAGATTGAAGAGGTATGTTTTTGATC 58.050 33.333 0.00 0.00 0.00 2.92
958 1061 8.868522 TGAGATTGAAGAGGTATGTTTTTGAT 57.131 30.769 0.00 0.00 0.00 2.57
959 1062 8.156820 TCTGAGATTGAAGAGGTATGTTTTTGA 58.843 33.333 0.00 0.00 0.00 2.69
960 1063 8.327941 TCTGAGATTGAAGAGGTATGTTTTTG 57.672 34.615 0.00 0.00 0.00 2.44
961 1064 9.171877 GATCTGAGATTGAAGAGGTATGTTTTT 57.828 33.333 0.00 0.00 0.00 1.94
962 1065 8.324306 TGATCTGAGATTGAAGAGGTATGTTTT 58.676 33.333 0.00 0.00 0.00 2.43
963 1066 7.855375 TGATCTGAGATTGAAGAGGTATGTTT 58.145 34.615 0.00 0.00 0.00 2.83
964 1067 7.429374 TGATCTGAGATTGAAGAGGTATGTT 57.571 36.000 0.00 0.00 0.00 2.71
965 1068 7.429374 TTGATCTGAGATTGAAGAGGTATGT 57.571 36.000 0.00 0.00 0.00 2.29
966 1069 8.728337 TTTTGATCTGAGATTGAAGAGGTATG 57.272 34.615 0.00 0.00 0.00 2.39
967 1070 9.917887 ATTTTTGATCTGAGATTGAAGAGGTAT 57.082 29.630 0.00 0.00 0.00 2.73
968 1071 9.388506 GATTTTTGATCTGAGATTGAAGAGGTA 57.611 33.333 0.00 0.00 0.00 3.08
969 1072 8.108364 AGATTTTTGATCTGAGATTGAAGAGGT 58.892 33.333 0.00 0.00 0.00 3.85
1051 1154 1.603802 CGTTGCTGTCCTTGATGTTGT 59.396 47.619 0.00 0.00 0.00 3.32
1054 1157 1.237285 GGCGTTGCTGTCCTTGATGT 61.237 55.000 0.00 0.00 0.00 3.06
1136 1239 2.288152 GGCGATGGAGCAAAACTGAAAA 60.288 45.455 0.00 0.00 39.27 2.29
1419 1649 4.995624 AGAAAAGTTACAGGTAGGCCTT 57.004 40.909 12.58 0.00 44.18 4.35
1492 1722 5.105797 CGACAAATGAGGATTTCAATTGGGA 60.106 40.000 5.42 0.00 46.44 4.37
1565 1795 7.523293 ACTATCAGATAGTCATTCTCCTGTG 57.477 40.000 16.34 0.00 42.17 3.66
1841 2072 2.015587 GAGTGTAGTGGTAGTCCCTCG 58.984 57.143 0.00 0.00 0.00 4.63
1890 2121 1.063266 ACCAACCATTTGACCAGGTGT 60.063 47.619 0.00 0.00 35.42 4.16
2251 2770 4.268644 CGTACACATATCTTGCTTGGAGTG 59.731 45.833 0.00 0.00 0.00 3.51
2367 2886 7.719871 ATATACAGTAAGCGATGATAACCCT 57.280 36.000 0.00 0.00 0.00 4.34
2513 3619 9.415008 GCAGGAGAGGAGTTCTTCATATATATA 57.585 37.037 0.00 0.00 35.87 0.86
2514 3620 8.121833 AGCAGGAGAGGAGTTCTTCATATATAT 58.878 37.037 0.00 0.00 35.87 0.86
2515 3621 7.474445 AGCAGGAGAGGAGTTCTTCATATATA 58.526 38.462 0.00 0.00 35.87 0.86
2516 3622 6.322126 AGCAGGAGAGGAGTTCTTCATATAT 58.678 40.000 0.00 0.00 35.87 0.86
2517 3623 5.710646 AGCAGGAGAGGAGTTCTTCATATA 58.289 41.667 0.00 0.00 35.87 0.86
2518 3624 4.555689 AGCAGGAGAGGAGTTCTTCATAT 58.444 43.478 0.00 0.00 35.87 1.78
2519 3625 3.987745 AGCAGGAGAGGAGTTCTTCATA 58.012 45.455 0.00 0.00 35.87 2.15
2520 3626 2.831565 AGCAGGAGAGGAGTTCTTCAT 58.168 47.619 0.00 0.00 35.87 2.57
2521 3627 2.317371 AGCAGGAGAGGAGTTCTTCA 57.683 50.000 0.00 0.00 35.87 3.02
2526 3632 4.323868 GGAAACAATAGCAGGAGAGGAGTT 60.324 45.833 0.00 0.00 0.00 3.01
2571 4123 7.095271 GCAAAAACATGCATAAAAGGAAGCTTA 60.095 33.333 0.00 0.00 45.70 3.09
2591 4143 6.282167 TCTGATGAAAGCATTGAAGCAAAAA 58.718 32.000 0.00 0.00 34.11 1.94
2792 4344 7.686438 TGTTGCTTCAAAAGAATAGCTCATA 57.314 32.000 0.00 0.00 34.77 2.15
2795 4347 7.880059 ATTTGTTGCTTCAAAAGAATAGCTC 57.120 32.000 9.93 0.00 40.05 4.09
2897 4449 1.433053 CTGCGTGGGTCAACGTTTGA 61.433 55.000 0.00 0.00 45.32 2.69
2898 4450 1.010125 CTGCGTGGGTCAACGTTTG 60.010 57.895 0.00 0.00 45.32 2.93
2899 4451 2.830285 GCTGCGTGGGTCAACGTTT 61.830 57.895 0.00 0.00 45.32 3.60
2900 4452 3.276846 GCTGCGTGGGTCAACGTT 61.277 61.111 0.00 0.00 45.32 3.99
2901 4453 3.750373 AAGCTGCGTGGGTCAACGT 62.750 57.895 0.00 0.00 45.32 3.99
2902 4454 2.443957 GAAAGCTGCGTGGGTCAACG 62.444 60.000 0.00 0.00 46.30 4.10
2903 4455 1.282875 GAAAGCTGCGTGGGTCAAC 59.717 57.895 0.00 0.00 0.00 3.18
2904 4456 1.153066 TGAAAGCTGCGTGGGTCAA 60.153 52.632 0.00 0.00 0.00 3.18
2905 4457 1.891919 GTGAAAGCTGCGTGGGTCA 60.892 57.895 0.00 0.00 0.00 4.02
2906 4458 1.237285 ATGTGAAAGCTGCGTGGGTC 61.237 55.000 0.00 0.00 0.00 4.46
2907 4459 1.228245 ATGTGAAAGCTGCGTGGGT 60.228 52.632 0.00 0.00 0.00 4.51
2908 4460 1.236616 TGATGTGAAAGCTGCGTGGG 61.237 55.000 0.00 0.00 0.00 4.61
2909 4461 0.110056 GTGATGTGAAAGCTGCGTGG 60.110 55.000 0.00 0.00 0.00 4.94
2910 4462 0.110056 GGTGATGTGAAAGCTGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
2911 4463 1.568612 CGGTGATGTGAAAGCTGCGT 61.569 55.000 0.00 0.00 0.00 5.24
2912 4464 1.133253 CGGTGATGTGAAAGCTGCG 59.867 57.895 0.00 0.00 0.00 5.18
2913 4465 1.089920 ATCGGTGATGTGAAAGCTGC 58.910 50.000 0.00 0.00 0.00 5.25
2914 4466 2.743664 TGAATCGGTGATGTGAAAGCTG 59.256 45.455 0.00 0.00 0.00 4.24
2915 4467 2.744202 GTGAATCGGTGATGTGAAAGCT 59.256 45.455 0.00 0.00 0.00 3.74
2916 4468 2.159517 GGTGAATCGGTGATGTGAAAGC 60.160 50.000 0.00 0.00 0.00 3.51
2917 4469 3.073678 TGGTGAATCGGTGATGTGAAAG 58.926 45.455 0.00 0.00 0.00 2.62
2918 4470 3.073678 CTGGTGAATCGGTGATGTGAAA 58.926 45.455 0.00 0.00 0.00 2.69
2919 4471 2.615240 CCTGGTGAATCGGTGATGTGAA 60.615 50.000 0.00 0.00 0.00 3.18
2920 4472 1.066215 CCTGGTGAATCGGTGATGTGA 60.066 52.381 0.00 0.00 0.00 3.58
2921 4473 1.066215 TCCTGGTGAATCGGTGATGTG 60.066 52.381 0.00 0.00 0.00 3.21
2922 4474 1.208052 CTCCTGGTGAATCGGTGATGT 59.792 52.381 0.00 0.00 0.00 3.06
2923 4475 1.945387 CTCCTGGTGAATCGGTGATG 58.055 55.000 0.00 0.00 0.00 3.07
2924 4476 0.179000 GCTCCTGGTGAATCGGTGAT 59.821 55.000 0.00 0.00 0.00 3.06
2925 4477 1.596934 GCTCCTGGTGAATCGGTGA 59.403 57.895 0.00 0.00 0.00 4.02
2926 4478 1.450312 GGCTCCTGGTGAATCGGTG 60.450 63.158 0.00 0.00 0.00 4.94
2927 4479 1.613630 AGGCTCCTGGTGAATCGGT 60.614 57.895 0.00 0.00 0.00 4.69
2928 4480 1.144936 GAGGCTCCTGGTGAATCGG 59.855 63.158 2.15 0.00 0.00 4.18
2929 4481 0.460987 GTGAGGCTCCTGGTGAATCG 60.461 60.000 12.86 0.00 0.00 3.34
2930 4482 0.615331 TGTGAGGCTCCTGGTGAATC 59.385 55.000 12.86 0.00 0.00 2.52
2931 4483 1.067295 TTGTGAGGCTCCTGGTGAAT 58.933 50.000 12.86 0.00 0.00 2.57
2932 4484 1.003580 GATTGTGAGGCTCCTGGTGAA 59.996 52.381 12.86 0.00 0.00 3.18
2933 4485 0.615331 GATTGTGAGGCTCCTGGTGA 59.385 55.000 12.86 0.00 0.00 4.02
2934 4486 0.393537 GGATTGTGAGGCTCCTGGTG 60.394 60.000 12.86 0.00 0.00 4.17
2935 4487 0.548682 AGGATTGTGAGGCTCCTGGT 60.549 55.000 12.86 0.00 38.00 4.00
2936 4488 2.305095 AGGATTGTGAGGCTCCTGG 58.695 57.895 12.86 0.00 38.00 4.45
2938 4490 1.277580 CCCAGGATTGTGAGGCTCCT 61.278 60.000 12.86 0.00 40.05 3.69
2939 4491 1.225704 CCCAGGATTGTGAGGCTCC 59.774 63.158 12.86 4.00 0.00 4.70
2940 4492 0.179936 CTCCCAGGATTGTGAGGCTC 59.820 60.000 7.79 7.79 0.00 4.70
2941 4493 1.919600 GCTCCCAGGATTGTGAGGCT 61.920 60.000 0.00 0.00 30.45 4.58
2942 4494 1.452833 GCTCCCAGGATTGTGAGGC 60.453 63.158 0.00 0.00 30.45 4.70
2943 4495 0.622665 AAGCTCCCAGGATTGTGAGG 59.377 55.000 0.00 0.00 30.45 3.86
2944 4496 2.768527 TCTAAGCTCCCAGGATTGTGAG 59.231 50.000 0.00 0.00 32.63 3.51
2945 4497 2.832838 TCTAAGCTCCCAGGATTGTGA 58.167 47.619 0.00 0.00 0.00 3.58
2946 4498 3.634397 TTCTAAGCTCCCAGGATTGTG 57.366 47.619 0.00 0.00 0.00 3.33
2947 4499 4.870021 AATTCTAAGCTCCCAGGATTGT 57.130 40.909 0.00 0.00 0.00 2.71
2948 4500 4.952335 ACAAATTCTAAGCTCCCAGGATTG 59.048 41.667 0.00 0.00 0.00 2.67
2949 4501 5.198602 ACAAATTCTAAGCTCCCAGGATT 57.801 39.130 0.00 0.00 0.00 3.01
2950 4502 4.870021 ACAAATTCTAAGCTCCCAGGAT 57.130 40.909 0.00 0.00 0.00 3.24
2951 4503 4.783227 AGTACAAATTCTAAGCTCCCAGGA 59.217 41.667 0.00 0.00 0.00 3.86
2952 4504 4.878397 CAGTACAAATTCTAAGCTCCCAGG 59.122 45.833 0.00 0.00 0.00 4.45
2953 4505 5.734720 TCAGTACAAATTCTAAGCTCCCAG 58.265 41.667 0.00 0.00 0.00 4.45
2954 4506 5.755409 TCAGTACAAATTCTAAGCTCCCA 57.245 39.130 0.00 0.00 0.00 4.37
2955 4507 6.037610 CACATCAGTACAAATTCTAAGCTCCC 59.962 42.308 0.00 0.00 0.00 4.30
2956 4508 6.595716 ACACATCAGTACAAATTCTAAGCTCC 59.404 38.462 0.00 0.00 0.00 4.70
2957 4509 7.602517 ACACATCAGTACAAATTCTAAGCTC 57.397 36.000 0.00 0.00 0.00 4.09
2958 4510 8.314751 AGTACACATCAGTACAAATTCTAAGCT 58.685 33.333 6.97 0.00 45.25 3.74
2959 4511 8.480643 AGTACACATCAGTACAAATTCTAAGC 57.519 34.615 6.97 0.00 45.25 3.09
2960 4512 9.639601 TGAGTACACATCAGTACAAATTCTAAG 57.360 33.333 6.97 0.00 45.25 2.18
2961 4513 9.419297 GTGAGTACACATCAGTACAAATTCTAA 57.581 33.333 6.97 0.00 45.25 2.10
2962 4514 8.981724 GTGAGTACACATCAGTACAAATTCTA 57.018 34.615 6.97 0.00 45.25 2.10
2963 4515 7.891183 GTGAGTACACATCAGTACAAATTCT 57.109 36.000 6.97 0.00 45.25 2.40
2978 4530 1.961394 TGGAGTGGTCTGTGAGTACAC 59.039 52.381 0.00 0.00 46.09 2.90
2979 4531 1.961394 GTGGAGTGGTCTGTGAGTACA 59.039 52.381 0.00 0.00 35.08 2.90
2980 4532 1.272769 GGTGGAGTGGTCTGTGAGTAC 59.727 57.143 0.00 0.00 0.00 2.73
2981 4533 1.147191 AGGTGGAGTGGTCTGTGAGTA 59.853 52.381 0.00 0.00 0.00 2.59
2982 4534 0.105453 AGGTGGAGTGGTCTGTGAGT 60.105 55.000 0.00 0.00 0.00 3.41
2983 4535 1.924731 TAGGTGGAGTGGTCTGTGAG 58.075 55.000 0.00 0.00 0.00 3.51
2984 4536 2.623418 ATAGGTGGAGTGGTCTGTGA 57.377 50.000 0.00 0.00 0.00 3.58
2985 4537 3.366396 ACTATAGGTGGAGTGGTCTGTG 58.634 50.000 4.43 0.00 0.00 3.66
2986 4538 3.759815 ACTATAGGTGGAGTGGTCTGT 57.240 47.619 4.43 0.00 0.00 3.41
2987 4539 4.794334 AGTACTATAGGTGGAGTGGTCTG 58.206 47.826 4.43 0.00 0.00 3.51
2988 4540 5.202004 CAAGTACTATAGGTGGAGTGGTCT 58.798 45.833 4.43 0.00 0.00 3.85
2989 4541 4.341520 CCAAGTACTATAGGTGGAGTGGTC 59.658 50.000 4.76 0.00 0.00 4.02
2990 4542 4.264713 ACCAAGTACTATAGGTGGAGTGGT 60.265 45.833 15.89 9.62 32.04 4.16
2991 4543 4.099573 CACCAAGTACTATAGGTGGAGTGG 59.900 50.000 24.09 14.73 45.96 4.00
2992 4544 5.263968 CACCAAGTACTATAGGTGGAGTG 57.736 47.826 24.09 9.36 45.96 3.51
2998 4550 4.287552 CCTGTCCACCAAGTACTATAGGT 58.712 47.826 4.43 8.36 33.91 3.08
2999 4551 3.641906 CCCTGTCCACCAAGTACTATAGG 59.358 52.174 4.43 1.27 0.00 2.57
3000 4552 3.641906 CCCCTGTCCACCAAGTACTATAG 59.358 52.174 0.00 0.00 0.00 1.31
3001 4553 3.631605 CCCCCTGTCCACCAAGTACTATA 60.632 52.174 0.00 0.00 0.00 1.31
3002 4554 2.478292 CCCCTGTCCACCAAGTACTAT 58.522 52.381 0.00 0.00 0.00 2.12
3003 4555 1.553884 CCCCCTGTCCACCAAGTACTA 60.554 57.143 0.00 0.00 0.00 1.82
3004 4556 0.840722 CCCCCTGTCCACCAAGTACT 60.841 60.000 0.00 0.00 0.00 2.73
3005 4557 1.683441 CCCCCTGTCCACCAAGTAC 59.317 63.158 0.00 0.00 0.00 2.73
3006 4558 2.228480 GCCCCCTGTCCACCAAGTA 61.228 63.158 0.00 0.00 0.00 2.24
3007 4559 3.580319 GCCCCCTGTCCACCAAGT 61.580 66.667 0.00 0.00 0.00 3.16
3008 4560 2.445492 AATGCCCCCTGTCCACCAAG 62.445 60.000 0.00 0.00 0.00 3.61
3009 4561 2.029892 AAATGCCCCCTGTCCACCAA 62.030 55.000 0.00 0.00 0.00 3.67
3010 4562 2.477893 AAATGCCCCCTGTCCACCA 61.478 57.895 0.00 0.00 0.00 4.17
3011 4563 1.984026 CAAATGCCCCCTGTCCACC 60.984 63.158 0.00 0.00 0.00 4.61
3012 4564 2.649129 GCAAATGCCCCCTGTCCAC 61.649 63.158 0.00 0.00 34.31 4.02
3013 4565 2.283821 GCAAATGCCCCCTGTCCA 60.284 61.111 0.00 0.00 34.31 4.02
3031 4583 4.410400 GTCAAGTGCCGGGGGAGG 62.410 72.222 2.18 0.00 0.00 4.30
3032 4584 4.410400 GGTCAAGTGCCGGGGGAG 62.410 72.222 2.18 0.00 0.00 4.30
3036 4588 4.619227 ACGTGGTCAAGTGCCGGG 62.619 66.667 2.18 0.00 0.00 5.73
3037 4589 2.590575 AACGTGGTCAAGTGCCGG 60.591 61.111 0.00 0.00 0.00 6.13
3038 4590 0.876777 TACAACGTGGTCAAGTGCCG 60.877 55.000 0.00 0.00 0.00 5.69
3039 4591 1.519408 ATACAACGTGGTCAAGTGCC 58.481 50.000 0.00 0.00 0.00 5.01
3040 4592 3.619233 AAATACAACGTGGTCAAGTGC 57.381 42.857 0.00 0.00 0.00 4.40
3041 4593 9.834628 ATTAAATAAATACAACGTGGTCAAGTG 57.165 29.630 0.00 0.00 0.00 3.16
3108 4660 8.946085 TCGCAAATCAGAGACAAAGTTAATTAT 58.054 29.630 0.00 0.00 0.00 1.28
3109 4661 8.317891 TCGCAAATCAGAGACAAAGTTAATTA 57.682 30.769 0.00 0.00 0.00 1.40
3110 4662 7.202016 TCGCAAATCAGAGACAAAGTTAATT 57.798 32.000 0.00 0.00 0.00 1.40
3111 4663 6.128172 CCTCGCAAATCAGAGACAAAGTTAAT 60.128 38.462 0.00 0.00 36.65 1.40
3112 4664 5.179368 CCTCGCAAATCAGAGACAAAGTTAA 59.821 40.000 0.00 0.00 36.65 2.01
3113 4665 4.690748 CCTCGCAAATCAGAGACAAAGTTA 59.309 41.667 0.00 0.00 36.65 2.24
3114 4666 3.499918 CCTCGCAAATCAGAGACAAAGTT 59.500 43.478 0.00 0.00 36.65 2.66
3115 4667 3.070018 CCTCGCAAATCAGAGACAAAGT 58.930 45.455 0.00 0.00 36.65 2.66
3116 4668 2.159599 GCCTCGCAAATCAGAGACAAAG 60.160 50.000 0.00 0.00 36.65 2.77
3117 4669 1.806542 GCCTCGCAAATCAGAGACAAA 59.193 47.619 0.00 0.00 36.65 2.83
3118 4670 1.442769 GCCTCGCAAATCAGAGACAA 58.557 50.000 0.00 0.00 36.65 3.18
3119 4671 0.391661 GGCCTCGCAAATCAGAGACA 60.392 55.000 0.00 0.00 36.65 3.41
3120 4672 0.107945 AGGCCTCGCAAATCAGAGAC 60.108 55.000 0.00 0.00 36.65 3.36
3121 4673 0.107993 CAGGCCTCGCAAATCAGAGA 60.108 55.000 0.00 0.00 36.65 3.10
3122 4674 1.712977 GCAGGCCTCGCAAATCAGAG 61.713 60.000 18.68 0.00 0.00 3.35
3123 4675 1.746615 GCAGGCCTCGCAAATCAGA 60.747 57.895 18.68 0.00 0.00 3.27
3124 4676 1.381928 ATGCAGGCCTCGCAAATCAG 61.382 55.000 26.51 5.39 43.84 2.90
3125 4677 0.966875 AATGCAGGCCTCGCAAATCA 60.967 50.000 26.51 9.46 43.84 2.57
3126 4678 0.526954 CAATGCAGGCCTCGCAAATC 60.527 55.000 26.51 3.19 43.84 2.17
3127 4679 1.514087 CAATGCAGGCCTCGCAAAT 59.486 52.632 26.51 18.22 43.84 2.32
3128 4680 2.638354 CCAATGCAGGCCTCGCAAA 61.638 57.895 26.51 10.66 43.84 3.68
3129 4681 2.842188 ATCCAATGCAGGCCTCGCAA 62.842 55.000 26.51 14.89 43.84 4.85
3130 4682 3.348554 ATCCAATGCAGGCCTCGCA 62.349 57.895 25.46 25.46 44.94 5.10
3131 4683 2.517875 ATCCAATGCAGGCCTCGC 60.518 61.111 17.27 17.27 0.00 5.03
3132 4684 2.191513 CCATCCAATGCAGGCCTCG 61.192 63.158 0.00 0.00 0.00 4.63
3133 4685 2.496291 GCCATCCAATGCAGGCCTC 61.496 63.158 0.00 0.00 41.25 4.70
3134 4686 2.443390 GCCATCCAATGCAGGCCT 60.443 61.111 0.00 0.00 41.25 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.