Multiple sequence alignment - TraesCS2A01G521500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G521500 chr2A 100.000 2383 0 0 1 2383 744407663 744410045 0.000000e+00 4401.0
1 TraesCS2A01G521500 chr2D 81.112 2123 164 130 184 2212 612324592 612326571 0.000000e+00 1480.0
2 TraesCS2A01G521500 chr2D 78.767 1022 114 61 142 1149 612183887 612184819 7.340000e-165 590.0
3 TraesCS2A01G521500 chr2D 90.476 210 13 3 1183 1388 612184909 612185115 1.090000e-68 270.0
4 TraesCS2A01G521500 chr2D 89.333 150 13 2 2234 2380 612326549 612326698 4.040000e-43 185.0
5 TraesCS2A01G521500 chr2D 97.561 41 1 0 2 42 609558206 609558166 1.180000e-08 71.3
6 TraesCS2A01G521500 chr2D 93.333 45 3 0 2 46 83962517 83962473 1.530000e-07 67.6
7 TraesCS2A01G521500 chr2D 95.238 42 2 0 1 42 609663570 609663611 1.530000e-07 67.6
8 TraesCS2A01G521500 chr2B 81.979 1748 134 92 580 2238 747076819 747078474 0.000000e+00 1315.0
9 TraesCS2A01G521500 chr2B 81.620 642 52 29 778 1383 746680317 746680928 2.770000e-129 472.0
10 TraesCS2A01G521500 chr2B 80.952 441 56 16 41 470 747076174 747076597 8.220000e-85 324.0
11 TraesCS2A01G521500 chr2B 91.391 151 12 1 2234 2383 747078423 747078573 3.100000e-49 206.0
12 TraesCS2A01G521500 chr2B 97.619 42 1 0 1 42 744088758 744088799 3.290000e-09 73.1
13 TraesCS2A01G521500 chr2B 92.157 51 3 1 2 52 622503398 622503349 1.180000e-08 71.3
14 TraesCS2A01G521500 chr5A 84.821 112 12 5 2103 2212 645992432 645992324 9.010000e-20 108.0
15 TraesCS2A01G521500 chr7B 82.540 126 16 6 2104 2226 734841072 734840950 3.240000e-19 106.0
16 TraesCS2A01G521500 chr7B 81.890 127 17 6 2103 2226 734816137 734816014 4.190000e-18 102.0
17 TraesCS2A01G521500 chr7B 81.746 126 17 6 2104 2226 734865633 734865511 1.510000e-17 100.0
18 TraesCS2A01G521500 chr7B 81.746 126 17 6 2104 2226 734886441 734886319 1.510000e-17 100.0
19 TraesCS2A01G521500 chr7B 100.000 29 0 0 2301 2329 419247736 419247764 1.000000e-03 54.7
20 TraesCS2A01G521500 chr4D 88.372 86 10 0 1243 1328 458091185 458091100 1.170000e-18 104.0
21 TraesCS2A01G521500 chr4D 100.000 41 0 0 2 42 16914526 16914566 2.540000e-10 76.8
22 TraesCS2A01G521500 chr4A 92.958 71 5 0 1243 1313 10939078 10939148 1.170000e-18 104.0
23 TraesCS2A01G521500 chr4A 95.238 42 2 0 2 43 713924361 713924320 1.530000e-07 67.6
24 TraesCS2A01G521500 chrUn 81.890 127 17 6 2103 2226 165281089 165281212 4.190000e-18 102.0
25 TraesCS2A01G521500 chrUn 81.890 127 17 6 2103 2226 165312279 165312402 4.190000e-18 102.0
26 TraesCS2A01G521500 chrUn 81.600 125 19 4 2104 2226 433411190 433411068 1.510000e-17 100.0
27 TraesCS2A01G521500 chr4B 87.209 86 11 0 1243 1328 572157228 572157143 5.420000e-17 99.0
28 TraesCS2A01G521500 chr6A 97.561 41 1 0 2 42 383961825 383961865 1.180000e-08 71.3
29 TraesCS2A01G521500 chr7D 95.349 43 0 2 2 43 60676596 60676555 1.530000e-07 67.6
30 TraesCS2A01G521500 chr3B 100.000 29 0 0 2301 2329 130680460 130680432 1.000000e-03 54.7
31 TraesCS2A01G521500 chr3B 100.000 28 0 0 2301 2328 511698719 511698746 4.000000e-03 52.8
32 TraesCS2A01G521500 chr5D 100.000 28 0 0 2301 2328 242691664 242691637 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G521500 chr2A 744407663 744410045 2382 False 4401.0 4401 100.0000 1 2383 1 chr2A.!!$F1 2382
1 TraesCS2A01G521500 chr2D 612324592 612326698 2106 False 832.5 1480 85.2225 184 2380 2 chr2D.!!$F3 2196
2 TraesCS2A01G521500 chr2D 612183887 612185115 1228 False 430.0 590 84.6215 142 1388 2 chr2D.!!$F2 1246
3 TraesCS2A01G521500 chr2B 747076174 747078573 2399 False 615.0 1315 84.7740 41 2383 3 chr2B.!!$F3 2342
4 TraesCS2A01G521500 chr2B 746680317 746680928 611 False 472.0 472 81.6200 778 1383 1 chr2B.!!$F2 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 959 0.040058 TCTTCGCCCTGGTACTGGTA 59.96 55.0 0.0 0.0 46.69 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2575 0.168788 AATCTTGTCGCGGTTGCATG 59.831 50.0 6.13 3.59 42.97 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.326200 AGTTTACAGAGGAAGTACGATGG 57.674 43.478 0.00 0.00 0.00 3.51
48 49 5.014858 AGTTTACAGAGGAAGTACGATGGA 58.985 41.667 0.00 0.00 0.00 3.41
49 50 5.479375 AGTTTACAGAGGAAGTACGATGGAA 59.521 40.000 0.00 0.00 0.00 3.53
50 51 3.870633 ACAGAGGAAGTACGATGGAAC 57.129 47.619 0.00 0.00 0.00 3.62
51 52 2.496470 ACAGAGGAAGTACGATGGAACC 59.504 50.000 0.00 0.00 0.00 3.62
52 53 2.761208 CAGAGGAAGTACGATGGAACCT 59.239 50.000 0.00 0.00 0.00 3.50
53 54 3.195825 CAGAGGAAGTACGATGGAACCTT 59.804 47.826 0.00 0.00 0.00 3.50
54 55 3.195825 AGAGGAAGTACGATGGAACCTTG 59.804 47.826 0.00 0.00 0.00 3.61
55 56 2.904434 AGGAAGTACGATGGAACCTTGT 59.096 45.455 0.00 0.00 0.00 3.16
56 57 4.091549 AGGAAGTACGATGGAACCTTGTA 58.908 43.478 0.00 0.00 0.00 2.41
57 58 4.529377 AGGAAGTACGATGGAACCTTGTAA 59.471 41.667 0.00 0.00 0.00 2.41
58 59 4.868734 GGAAGTACGATGGAACCTTGTAAG 59.131 45.833 0.00 0.00 0.00 2.34
63 64 5.432885 ACGATGGAACCTTGTAAGTTTTG 57.567 39.130 0.00 0.00 0.00 2.44
67 68 6.204108 CGATGGAACCTTGTAAGTTTTGTACT 59.796 38.462 0.00 0.00 39.32 2.73
72 73 9.079833 GGAACCTTGTAAGTTTTGTACTTTTTC 57.920 33.333 0.00 0.00 44.73 2.29
73 74 9.628746 GAACCTTGTAAGTTTTGTACTTTTTCA 57.371 29.630 0.00 0.00 44.73 2.69
76 77 8.030106 CCTTGTAAGTTTTGTACTTTTTCACCA 58.970 33.333 0.00 0.00 44.73 4.17
83 84 9.634163 AGTTTTGTACTTTTTCACCAAACTAAG 57.366 29.630 0.00 0.00 38.27 2.18
84 85 8.865978 GTTTTGTACTTTTTCACCAAACTAAGG 58.134 33.333 0.00 0.00 31.23 2.69
86 87 7.706100 TGTACTTTTTCACCAAACTAAGGTT 57.294 32.000 0.00 0.00 37.23 3.50
97 98 5.128171 ACCAAACTAAGGTTTTCACTTTCCC 59.872 40.000 0.00 0.00 42.96 3.97
98 99 5.128008 CCAAACTAAGGTTTTCACTTTCCCA 59.872 40.000 0.00 0.00 42.96 4.37
99 100 6.351456 CCAAACTAAGGTTTTCACTTTCCCAA 60.351 38.462 0.00 0.00 42.96 4.12
102 103 4.584327 AAGGTTTTCACTTTCCCAATCG 57.416 40.909 0.00 0.00 0.00 3.34
105 106 3.069016 GGTTTTCACTTTCCCAATCGGTT 59.931 43.478 0.00 0.00 0.00 4.44
117 126 4.888239 TCCCAATCGGTTGTGACTTAAAAA 59.112 37.500 7.79 0.00 33.36 1.94
129 138 6.551736 TGTGACTTAAAAAGCAGTCAACTTC 58.448 36.000 4.08 0.00 42.01 3.01
134 143 3.675467 AAAAGCAGTCAACTTCGACAC 57.325 42.857 0.00 0.00 38.43 3.67
138 147 2.036475 AGCAGTCAACTTCGACACAGAT 59.964 45.455 0.00 0.00 38.43 2.90
139 148 2.156504 GCAGTCAACTTCGACACAGATG 59.843 50.000 0.00 0.00 38.43 2.90
140 149 2.156504 CAGTCAACTTCGACACAGATGC 59.843 50.000 0.00 0.00 38.43 3.91
143 152 1.195448 CAACTTCGACACAGATGCACC 59.805 52.381 0.00 0.00 0.00 5.01
153 162 2.746904 CACAGATGCACCGTAAAATCCA 59.253 45.455 0.00 0.00 0.00 3.41
158 167 6.151985 ACAGATGCACCGTAAAATCCAATTTA 59.848 34.615 0.00 0.00 0.00 1.40
159 168 6.472163 CAGATGCACCGTAAAATCCAATTTAC 59.528 38.462 0.00 0.00 40.66 2.01
165 174 7.201401 GCACCGTAAAATCCAATTTACATTCAC 60.201 37.037 9.72 0.00 42.99 3.18
173 182 8.879342 AATCCAATTTACATTCACAAACGAAA 57.121 26.923 0.00 0.00 0.00 3.46
174 183 7.922505 TCCAATTTACATTCACAAACGAAAG 57.077 32.000 0.00 0.00 0.00 2.62
181 190 4.096382 ACATTCACAAACGAAAGCTTGTCT 59.904 37.500 0.00 0.00 46.50 3.41
182 191 3.673746 TCACAAACGAAAGCTTGTCTG 57.326 42.857 0.00 0.00 46.50 3.51
189 198 6.017109 ACAAACGAAAGCTTGTCTGTTGATAT 60.017 34.615 0.00 0.00 46.50 1.63
192 201 8.942338 AACGAAAGCTTGTCTGTTGATATATA 57.058 30.769 0.00 0.00 0.00 0.86
193 202 8.581057 ACGAAAGCTTGTCTGTTGATATATAG 57.419 34.615 0.00 0.00 0.00 1.31
195 204 9.035607 CGAAAGCTTGTCTGTTGATATATAGTT 57.964 33.333 0.00 0.00 0.00 2.24
234 243 7.040494 CCATATGATTATGCACTAGGAGACAG 58.960 42.308 3.65 0.00 34.94 3.51
238 247 4.720649 TTATGCACTAGGAGACAGTGAC 57.279 45.455 6.67 0.00 45.10 3.67
242 251 2.164624 GCACTAGGAGACAGTGACGATT 59.835 50.000 6.67 0.00 45.10 3.34
243 252 3.763902 CACTAGGAGACAGTGACGATTG 58.236 50.000 0.00 0.00 45.10 2.67
257 266 6.145209 CAGTGACGATTGCTTAATCTATCCAG 59.855 42.308 0.00 0.00 0.00 3.86
312 327 2.029110 GCATGCAGATCTAGAGAGACCC 60.029 54.545 14.21 0.00 33.41 4.46
370 385 2.358898 ACACAGTGCAGACAAAATCCAC 59.641 45.455 0.00 0.00 0.00 4.02
391 406 4.024048 CACAGGCCACACAACTAAACTAAG 60.024 45.833 5.01 0.00 0.00 2.18
393 408 4.819630 CAGGCCACACAACTAAACTAAGAA 59.180 41.667 5.01 0.00 0.00 2.52
394 409 5.049405 CAGGCCACACAACTAAACTAAGAAG 60.049 44.000 5.01 0.00 0.00 2.85
395 410 4.215613 GGCCACACAACTAAACTAAGAAGG 59.784 45.833 0.00 0.00 0.00 3.46
396 411 5.061179 GCCACACAACTAAACTAAGAAGGA 58.939 41.667 0.00 0.00 0.00 3.36
397 412 5.529800 GCCACACAACTAAACTAAGAAGGAA 59.470 40.000 0.00 0.00 0.00 3.36
399 414 7.415229 CCACACAACTAAACTAAGAAGGAAAC 58.585 38.462 0.00 0.00 0.00 2.78
400 415 7.066525 CCACACAACTAAACTAAGAAGGAAACA 59.933 37.037 0.00 0.00 0.00 2.83
422 439 9.995957 AAACAAACAAATAAACAAGCATTTACC 57.004 25.926 0.00 0.00 0.00 2.85
423 440 8.148807 ACAAACAAATAAACAAGCATTTACCC 57.851 30.769 0.00 0.00 0.00 3.69
440 457 0.110778 CCCGATCGATCTCGTACGTG 60.111 60.000 22.43 13.38 40.80 4.49
489 509 3.598715 GCACCACAGCAGCAGCAA 61.599 61.111 3.17 0.00 45.49 3.91
490 510 2.927580 GCACCACAGCAGCAGCAAT 61.928 57.895 3.17 0.00 45.49 3.56
491 511 1.663739 CACCACAGCAGCAGCAATT 59.336 52.632 3.17 0.00 45.49 2.32
492 512 0.666274 CACCACAGCAGCAGCAATTG 60.666 55.000 3.17 0.00 45.49 2.32
493 513 0.824595 ACCACAGCAGCAGCAATTGA 60.825 50.000 10.34 0.00 45.49 2.57
494 514 0.109272 CCACAGCAGCAGCAATTGAG 60.109 55.000 10.34 1.47 45.49 3.02
495 515 0.732880 CACAGCAGCAGCAATTGAGC 60.733 55.000 10.34 12.27 45.49 4.26
496 516 1.153823 CAGCAGCAGCAATTGAGCC 60.154 57.895 10.34 0.93 45.49 4.70
497 517 2.202570 GCAGCAGCAATTGAGCCG 60.203 61.111 10.34 5.92 41.58 5.52
498 518 2.202570 CAGCAGCAATTGAGCCGC 60.203 61.111 10.34 5.21 38.18 6.53
499 519 2.360852 AGCAGCAATTGAGCCGCT 60.361 55.556 10.34 7.53 43.06 5.52
500 520 2.101770 GCAGCAATTGAGCCGCTC 59.898 61.111 13.81 13.81 35.12 5.03
501 521 2.796651 CAGCAATTGAGCCGCTCC 59.203 61.111 17.81 1.76 32.48 4.70
502 522 2.821366 AGCAATTGAGCCGCTCCG 60.821 61.111 17.81 5.05 34.23 4.63
503 523 4.543084 GCAATTGAGCCGCTCCGC 62.543 66.667 17.81 11.00 0.00 5.54
504 524 3.880846 CAATTGAGCCGCTCCGCC 61.881 66.667 17.81 0.00 0.00 6.13
505 525 4.408821 AATTGAGCCGCTCCGCCA 62.409 61.111 17.81 0.00 0.00 5.69
514 534 2.466982 CGCTCCGCCACGTCTACTA 61.467 63.158 0.00 0.00 0.00 1.82
515 535 1.355916 GCTCCGCCACGTCTACTAG 59.644 63.158 0.00 0.00 0.00 2.57
554 574 1.068748 GGCTGCAACTGTCACTGAATG 60.069 52.381 0.50 0.00 0.00 2.67
575 742 2.526432 CTACCACTCAGTACCACTGGT 58.474 52.381 5.88 5.88 45.94 4.00
576 743 2.688902 ACCACTCAGTACCACTGGTA 57.311 50.000 3.57 3.57 45.94 3.25
577 744 2.526432 ACCACTCAGTACCACTGGTAG 58.474 52.381 8.29 1.23 45.94 3.18
578 745 2.158355 ACCACTCAGTACCACTGGTAGT 60.158 50.000 8.29 8.95 45.94 2.73
641 808 1.208293 GTCTCTCCCTGTCACCCATTC 59.792 57.143 0.00 0.00 0.00 2.67
658 825 0.973632 TTCACAGCCCTCGCTTTCTA 59.026 50.000 0.00 0.00 45.55 2.10
659 826 0.973632 TCACAGCCCTCGCTTTCTAA 59.026 50.000 0.00 0.00 45.55 2.10
663 830 2.166664 ACAGCCCTCGCTTTCTAACTAG 59.833 50.000 0.00 0.00 45.55 2.57
664 831 2.427453 CAGCCCTCGCTTTCTAACTAGA 59.573 50.000 0.00 0.00 45.55 2.43
665 832 2.691011 AGCCCTCGCTTTCTAACTAGAG 59.309 50.000 0.00 0.00 45.55 2.43
666 833 2.800273 GCCCTCGCTTTCTAACTAGAGC 60.800 54.545 0.00 0.00 33.21 4.09
667 834 2.691011 CCCTCGCTTTCTAACTAGAGCT 59.309 50.000 0.00 0.00 33.21 4.09
668 835 3.243267 CCCTCGCTTTCTAACTAGAGCTC 60.243 52.174 5.27 5.27 33.21 4.09
669 836 3.630312 CCTCGCTTTCTAACTAGAGCTCT 59.370 47.826 22.17 22.17 33.21 4.09
670 837 4.261031 CCTCGCTTTCTAACTAGAGCTCTC 60.261 50.000 22.17 0.06 33.21 3.20
671 838 4.262617 TCGCTTTCTAACTAGAGCTCTCA 58.737 43.478 22.17 6.12 33.21 3.27
672 839 4.095185 TCGCTTTCTAACTAGAGCTCTCAC 59.905 45.833 22.17 0.00 33.21 3.51
673 840 4.678622 GCTTTCTAACTAGAGCTCTCACC 58.321 47.826 22.17 0.00 33.21 4.02
674 841 4.440940 GCTTTCTAACTAGAGCTCTCACCC 60.441 50.000 22.17 0.00 33.21 4.61
675 842 3.300239 TCTAACTAGAGCTCTCACCCC 57.700 52.381 22.17 0.00 0.00 4.95
676 843 2.853707 TCTAACTAGAGCTCTCACCCCT 59.146 50.000 22.17 2.78 0.00 4.79
677 844 2.153034 AACTAGAGCTCTCACCCCTC 57.847 55.000 22.17 0.00 0.00 4.30
678 845 1.304891 ACTAGAGCTCTCACCCCTCT 58.695 55.000 22.17 0.00 39.20 3.69
679 846 1.214424 ACTAGAGCTCTCACCCCTCTC 59.786 57.143 22.17 0.00 37.20 3.20
680 847 0.553819 TAGAGCTCTCACCCCTCTCC 59.446 60.000 22.17 0.00 37.20 3.71
681 848 1.221213 AGAGCTCTCACCCCTCTCCT 61.221 60.000 11.45 0.00 30.46 3.69
682 849 0.755327 GAGCTCTCACCCCTCTCCTC 60.755 65.000 6.43 0.00 0.00 3.71
683 850 1.760480 GCTCTCACCCCTCTCCTCC 60.760 68.421 0.00 0.00 0.00 4.30
684 851 1.075600 CTCTCACCCCTCTCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
694 863 2.197324 CTCCTCCCCTCCCTCTCG 59.803 72.222 0.00 0.00 0.00 4.04
701 870 2.837291 CCTCCCTCTCGCCTCCTG 60.837 72.222 0.00 0.00 0.00 3.86
709 878 4.815108 TCGCCTCCTGCCTCGCTA 62.815 66.667 0.00 0.00 36.24 4.26
710 879 3.838271 CGCCTCCTGCCTCGCTAA 61.838 66.667 0.00 0.00 36.24 3.09
712 881 2.107953 CCTCCTGCCTCGCTAAGC 59.892 66.667 0.00 0.00 0.00 3.09
713 882 2.107953 CTCCTGCCTCGCTAAGCC 59.892 66.667 0.00 0.00 0.00 4.35
714 883 3.781770 CTCCTGCCTCGCTAAGCCG 62.782 68.421 0.00 0.00 0.00 5.52
716 885 4.521062 CTGCCTCGCTAAGCCGCT 62.521 66.667 0.00 0.00 0.00 5.52
737 947 1.294857 GCTTCCTCATCTTCTTCGCC 58.705 55.000 0.00 0.00 0.00 5.54
740 950 0.826715 TCCTCATCTTCTTCGCCCTG 59.173 55.000 0.00 0.00 0.00 4.45
741 951 0.179062 CCTCATCTTCTTCGCCCTGG 60.179 60.000 0.00 0.00 0.00 4.45
742 952 0.539051 CTCATCTTCTTCGCCCTGGT 59.461 55.000 0.00 0.00 0.00 4.00
743 953 1.757118 CTCATCTTCTTCGCCCTGGTA 59.243 52.381 0.00 0.00 0.00 3.25
744 954 1.480954 TCATCTTCTTCGCCCTGGTAC 59.519 52.381 0.00 0.00 0.00 3.34
745 955 1.482593 CATCTTCTTCGCCCTGGTACT 59.517 52.381 0.00 0.00 0.00 2.73
746 956 0.895530 TCTTCTTCGCCCTGGTACTG 59.104 55.000 0.00 0.00 0.00 2.74
748 958 0.834687 TTCTTCGCCCTGGTACTGGT 60.835 55.000 0.00 0.00 46.69 4.00
749 959 0.040058 TCTTCGCCCTGGTACTGGTA 59.960 55.000 0.00 0.00 46.69 3.25
757 967 2.158505 CCCTGGTACTGGTAGCTAGCTA 60.159 54.545 20.67 20.67 46.69 3.32
772 982 2.806237 CTAGTTCTCGGACCGGCC 59.194 66.667 15.25 2.44 0.00 6.13
830 1040 0.670162 CCACTCACCTGCACCAAAAG 59.330 55.000 0.00 0.00 0.00 2.27
831 1041 0.670162 CACTCACCTGCACCAAAAGG 59.330 55.000 0.00 0.00 39.65 3.11
832 1042 1.109323 ACTCACCTGCACCAAAAGGC 61.109 55.000 0.00 0.00 37.03 4.35
837 1060 1.301165 CTGCACCAAAAGGCAAGCC 60.301 57.895 2.02 2.02 39.93 4.35
844 1067 0.318107 CAAAAGGCAAGCCACACTCG 60.318 55.000 14.40 0.00 38.92 4.18
852 1075 4.947147 GCCACACTCGCCCCACAA 62.947 66.667 0.00 0.00 0.00 3.33
855 1078 2.111043 ACACTCGCCCCACAACTG 59.889 61.111 0.00 0.00 0.00 3.16
856 1079 3.357079 CACTCGCCCCACAACTGC 61.357 66.667 0.00 0.00 0.00 4.40
857 1080 3.560251 ACTCGCCCCACAACTGCT 61.560 61.111 0.00 0.00 0.00 4.24
858 1081 2.214216 ACTCGCCCCACAACTGCTA 61.214 57.895 0.00 0.00 0.00 3.49
859 1082 1.448540 CTCGCCCCACAACTGCTAG 60.449 63.158 0.00 0.00 0.00 3.42
860 1083 3.127533 CGCCCCACAACTGCTAGC 61.128 66.667 8.10 8.10 0.00 3.42
861 1084 2.352805 GCCCCACAACTGCTAGCT 59.647 61.111 17.23 0.00 0.00 3.32
862 1085 1.602237 GCCCCACAACTGCTAGCTA 59.398 57.895 17.23 1.31 0.00 3.32
863 1086 0.744771 GCCCCACAACTGCTAGCTAC 60.745 60.000 17.23 0.00 0.00 3.58
864 1087 0.107654 CCCCACAACTGCTAGCTACC 60.108 60.000 17.23 0.00 0.00 3.18
865 1088 0.613260 CCCACAACTGCTAGCTACCA 59.387 55.000 17.23 0.00 0.00 3.25
871 1101 0.755686 ACTGCTAGCTACCATCTGCC 59.244 55.000 17.23 0.00 0.00 4.85
887 1117 5.221422 CCATCTGCCTAGCTAAGCTATATCC 60.221 48.000 15.19 0.00 40.54 2.59
888 1118 5.199982 TCTGCCTAGCTAAGCTATATCCT 57.800 43.478 15.19 0.00 40.54 3.24
889 1119 6.328782 TCTGCCTAGCTAAGCTATATCCTA 57.671 41.667 15.19 0.00 40.54 2.94
890 1120 6.123651 TCTGCCTAGCTAAGCTATATCCTAC 58.876 44.000 15.19 0.00 40.54 3.18
892 1122 5.652891 TGCCTAGCTAAGCTATATCCTACAC 59.347 44.000 15.19 0.00 40.54 2.90
897 1127 4.220821 GCTAAGCTATATCCTACACCTGCA 59.779 45.833 0.00 0.00 0.00 4.41
913 1143 4.332637 CAAGCTGCGTGTGGGCAC 62.333 66.667 7.43 0.00 38.17 5.01
914 1144 4.569180 AAGCTGCGTGTGGGCACT 62.569 61.111 0.00 0.00 43.16 4.40
915 1145 4.996434 AGCTGCGTGTGGGCACTC 62.996 66.667 0.00 0.00 43.16 3.51
961 1191 3.700961 CGTGCATACGCTACCCAC 58.299 61.111 0.00 0.00 44.11 4.61
962 1192 1.141019 CGTGCATACGCTACCCACT 59.859 57.895 0.00 0.00 44.11 4.00
975 1205 4.320456 CCACTGCGGGCTGTGACT 62.320 66.667 25.91 0.00 44.94 3.41
976 1206 2.740055 CACTGCGGGCTGTGACTC 60.740 66.667 21.53 0.00 44.94 3.36
1119 1352 3.787001 CTCCCGGAGTCCCAAGCC 61.787 72.222 0.73 0.00 0.00 4.35
1128 1361 3.656280 TCCCAAGCCCGCAATGGA 61.656 61.111 11.79 0.99 42.00 3.41
1153 1420 3.053619 TCACAGGGTGAGTATCTAGCTGA 60.054 47.826 0.00 0.00 37.67 4.26
1165 1432 7.712639 TGAGTATCTAGCTGATTTTCCATGAAC 59.287 37.037 0.00 0.00 36.65 3.18
1213 1504 4.268687 GTCACTGAGACTTGGCGG 57.731 61.111 0.00 0.00 44.09 6.13
1214 1505 1.374758 GTCACTGAGACTTGGCGGG 60.375 63.158 0.00 0.00 44.09 6.13
1216 1507 2.925170 ACTGAGACTTGGCGGGCT 60.925 61.111 2.38 0.00 0.00 5.19
1218 1509 1.743252 CTGAGACTTGGCGGGCTTC 60.743 63.158 2.38 0.00 0.00 3.86
1220 1511 1.743252 GAGACTTGGCGGGCTTCTG 60.743 63.158 2.38 0.00 0.00 3.02
1221 1512 2.032681 GACTTGGCGGGCTTCTGT 59.967 61.111 2.38 0.00 0.00 3.41
1383 1676 1.129917 CAGGAGCCTCCTCATGTGAT 58.870 55.000 11.26 0.00 45.66 3.06
1384 1677 1.070445 CAGGAGCCTCCTCATGTGATC 59.930 57.143 11.26 0.00 45.66 2.92
1385 1678 0.396060 GGAGCCTCCTCATGTGATCC 59.604 60.000 2.64 0.00 39.96 3.36
1386 1679 1.422531 GAGCCTCCTCATGTGATCCT 58.577 55.000 0.00 0.00 38.03 3.24
1387 1680 1.344114 GAGCCTCCTCATGTGATCCTC 59.656 57.143 0.00 0.00 38.03 3.71
1388 1681 1.062275 AGCCTCCTCATGTGATCCTCT 60.062 52.381 0.00 0.00 0.00 3.69
1389 1682 1.344114 GCCTCCTCATGTGATCCTCTC 59.656 57.143 0.00 0.00 0.00 3.20
1390 1683 2.961510 CCTCCTCATGTGATCCTCTCT 58.038 52.381 0.00 0.00 0.00 3.10
1397 1690 0.106469 TGTGATCCTCTCTCCCTCCG 60.106 60.000 0.00 0.00 0.00 4.63
1401 1694 2.346284 ATCCTCTCTCCCTCCGTCCG 62.346 65.000 0.00 0.00 0.00 4.79
1402 1695 2.272797 CTCTCTCCCTCCGTCCGT 59.727 66.667 0.00 0.00 0.00 4.69
1410 1703 3.138798 CTCCGTCCGTCCGTCCAT 61.139 66.667 0.00 0.00 0.00 3.41
1418 1711 2.782222 CGTCCGTCCATCCATCGGT 61.782 63.158 0.00 0.00 43.94 4.69
1422 1715 2.782222 CGTCCATCCATCGGTCGGT 61.782 63.158 0.00 0.00 32.43 4.69
1429 1722 2.048222 CATCGGTCGGTGCACACT 60.048 61.111 20.43 0.00 0.00 3.55
1438 1731 1.282248 CGGTGCACACTTACGTCCAG 61.282 60.000 20.43 0.00 0.00 3.86
1440 1733 0.600255 GTGCACACTTACGTCCAGCT 60.600 55.000 13.17 0.00 0.00 4.24
1442 1735 1.336517 TGCACACTTACGTCCAGCTAC 60.337 52.381 0.00 0.00 0.00 3.58
1451 1744 0.801067 CGTCCAGCTACGTACCAAGC 60.801 60.000 0.74 0.00 38.07 4.01
1453 1746 0.815734 TCCAGCTACGTACCAAGCTC 59.184 55.000 7.59 0.00 45.92 4.09
1454 1747 0.525668 CCAGCTACGTACCAAGCTCG 60.526 60.000 7.59 0.00 45.92 5.03
1455 1748 0.170561 CAGCTACGTACCAAGCTCGT 59.829 55.000 7.59 2.81 45.92 4.18
1456 1749 0.886563 AGCTACGTACCAAGCTCGTT 59.113 50.000 4.72 0.00 45.92 3.85
1484 1789 2.106332 ATTCGTCCACGGCCGATC 59.894 61.111 35.90 16.93 40.29 3.69
1504 1813 1.000843 CATACTACGGGCTAGCATGCA 59.999 52.381 21.98 5.01 34.04 3.96
1505 1814 1.338107 TACTACGGGCTAGCATGCAT 58.662 50.000 21.98 7.68 34.04 3.96
1506 1815 0.250038 ACTACGGGCTAGCATGCATG 60.250 55.000 22.70 22.70 34.04 4.06
1517 1834 4.458829 ATGCATGCTGGGCTGGCT 62.459 61.111 20.33 0.00 31.78 4.75
1539 1856 3.347958 GCTAGCTAGCTAGTGTGTGAG 57.652 52.381 39.05 23.14 45.67 3.51
1541 1858 0.820871 AGCTAGCTAGTGTGTGAGCC 59.179 55.000 17.69 2.10 39.65 4.70
1606 1933 2.871096 TCGGGTTGATTAGTTTGGCT 57.129 45.000 0.00 0.00 0.00 4.75
1607 1934 3.149005 TCGGGTTGATTAGTTTGGCTT 57.851 42.857 0.00 0.00 0.00 4.35
1608 1935 3.078837 TCGGGTTGATTAGTTTGGCTTC 58.921 45.455 0.00 0.00 0.00 3.86
1609 1936 2.817258 CGGGTTGATTAGTTTGGCTTCA 59.183 45.455 0.00 0.00 0.00 3.02
1610 1937 3.443681 CGGGTTGATTAGTTTGGCTTCAT 59.556 43.478 0.00 0.00 0.00 2.57
1611 1938 4.675146 CGGGTTGATTAGTTTGGCTTCATG 60.675 45.833 0.00 0.00 0.00 3.07
1612 1939 4.381932 GGGTTGATTAGTTTGGCTTCATGG 60.382 45.833 0.00 0.00 0.00 3.66
1613 1940 4.176271 GTTGATTAGTTTGGCTTCATGGC 58.824 43.478 0.00 0.00 42.18 4.40
1634 1961 0.181114 TGGATTGGATTGCGAGAGGG 59.819 55.000 0.00 0.00 0.00 4.30
1635 1962 0.469917 GGATTGGATTGCGAGAGGGA 59.530 55.000 0.00 0.00 0.00 4.20
1636 1963 1.542108 GGATTGGATTGCGAGAGGGAG 60.542 57.143 0.00 0.00 0.00 4.30
1637 1964 0.471617 ATTGGATTGCGAGAGGGAGG 59.528 55.000 0.00 0.00 0.00 4.30
1642 1969 0.678048 ATTGCGAGAGGGAGGTTTGC 60.678 55.000 0.00 0.00 0.00 3.68
1697 2032 2.408271 CTGGACAGCAATAGCAAGGA 57.592 50.000 0.00 0.00 45.49 3.36
1698 2033 2.928334 CTGGACAGCAATAGCAAGGAT 58.072 47.619 0.00 0.00 45.49 3.24
1699 2034 2.877168 CTGGACAGCAATAGCAAGGATC 59.123 50.000 0.00 0.00 45.49 3.36
1700 2035 2.507058 TGGACAGCAATAGCAAGGATCT 59.493 45.455 0.00 0.00 45.49 2.75
1761 2096 4.278669 CGGTACACTGCCAGTATCTATCTT 59.721 45.833 0.00 0.00 0.00 2.40
1768 2103 3.181462 TGCCAGTATCTATCTTGCCAGTG 60.181 47.826 0.00 0.00 0.00 3.66
1980 2318 2.347452 GTGTGTGTGTGACTGTGTGTAC 59.653 50.000 0.00 0.00 0.00 2.90
2029 2367 6.763135 ACGCTTTATCATCTGAGCTCATTAAA 59.237 34.615 18.63 14.07 33.09 1.52
2071 2413 2.540101 GGGCGATGATTTGTACGAAGAG 59.460 50.000 1.30 0.00 0.00 2.85
2072 2414 3.444916 GGCGATGATTTGTACGAAGAGA 58.555 45.455 1.30 0.00 0.00 3.10
2079 2425 3.746045 TTTGTACGAAGAGACTGCCTT 57.254 42.857 0.00 0.00 0.00 4.35
2092 2438 8.499403 AAGAGACTGCCTTAAGAAATGAATAC 57.501 34.615 3.36 0.00 0.00 1.89
2100 2446 6.717084 GCCTTAAGAAATGAATACTAGGGCAT 59.283 38.462 3.36 0.00 34.27 4.40
2101 2447 7.308830 GCCTTAAGAAATGAATACTAGGGCATG 60.309 40.741 3.36 0.00 34.27 4.06
2148 2494 4.877251 TCACAACTAACTTTAGGCAAACGT 59.123 37.500 1.21 0.00 35.08 3.99
2161 2507 1.743995 AAACGTCGGCTGCCCATAC 60.744 57.895 14.12 8.19 0.00 2.39
2175 2521 2.091541 CCCATACAAAGTGTGGCGAAT 58.908 47.619 7.34 0.00 42.29 3.34
2179 2525 5.331902 CCATACAAAGTGTGGCGAATAAAG 58.668 41.667 0.00 0.00 37.94 1.85
2212 2558 5.971202 ACAACTGCGACAAGATTTAACAAAG 59.029 36.000 0.00 0.00 0.00 2.77
2213 2559 6.183360 ACAACTGCGACAAGATTTAACAAAGA 60.183 34.615 0.00 0.00 0.00 2.52
2214 2560 6.371809 ACTGCGACAAGATTTAACAAAGAA 57.628 33.333 0.00 0.00 0.00 2.52
2215 2561 6.430451 ACTGCGACAAGATTTAACAAAGAAG 58.570 36.000 0.00 0.00 0.00 2.85
2216 2562 5.212194 TGCGACAAGATTTAACAAAGAAGC 58.788 37.500 0.00 0.00 0.00 3.86
2217 2563 5.212194 GCGACAAGATTTAACAAAGAAGCA 58.788 37.500 0.00 0.00 0.00 3.91
2218 2564 5.340667 GCGACAAGATTTAACAAAGAAGCAG 59.659 40.000 0.00 0.00 0.00 4.24
2219 2565 5.340667 CGACAAGATTTAACAAAGAAGCAGC 59.659 40.000 0.00 0.00 0.00 5.25
2220 2566 5.532557 ACAAGATTTAACAAAGAAGCAGCC 58.467 37.500 0.00 0.00 0.00 4.85
2221 2567 5.302823 ACAAGATTTAACAAAGAAGCAGCCT 59.697 36.000 0.00 0.00 0.00 4.58
2222 2568 6.490040 ACAAGATTTAACAAAGAAGCAGCCTA 59.510 34.615 0.00 0.00 0.00 3.93
2223 2569 7.177392 ACAAGATTTAACAAAGAAGCAGCCTAT 59.823 33.333 0.00 0.00 0.00 2.57
2224 2570 8.677300 CAAGATTTAACAAAGAAGCAGCCTATA 58.323 33.333 0.00 0.00 0.00 1.31
2225 2571 8.807948 AGATTTAACAAAGAAGCAGCCTATAA 57.192 30.769 0.00 0.00 0.00 0.98
2226 2572 9.413734 AGATTTAACAAAGAAGCAGCCTATAAT 57.586 29.630 0.00 0.00 0.00 1.28
2227 2573 9.455847 GATTTAACAAAGAAGCAGCCTATAATG 57.544 33.333 0.00 0.00 0.00 1.90
2228 2574 8.574251 TTTAACAAAGAAGCAGCCTATAATGA 57.426 30.769 0.00 0.00 0.00 2.57
2229 2575 6.442513 AACAAAGAAGCAGCCTATAATGAC 57.557 37.500 0.00 0.00 0.00 3.06
2230 2576 5.500234 ACAAAGAAGCAGCCTATAATGACA 58.500 37.500 0.00 0.00 0.00 3.58
2231 2577 6.125029 ACAAAGAAGCAGCCTATAATGACAT 58.875 36.000 0.00 0.00 0.00 3.06
2232 2578 6.039047 ACAAAGAAGCAGCCTATAATGACATG 59.961 38.462 0.00 0.00 0.00 3.21
2233 2579 4.070716 AGAAGCAGCCTATAATGACATGC 58.929 43.478 0.00 0.00 0.00 4.06
2234 2580 3.497103 AGCAGCCTATAATGACATGCA 57.503 42.857 0.00 0.00 34.71 3.96
2235 2581 3.824133 AGCAGCCTATAATGACATGCAA 58.176 40.909 0.00 0.00 34.71 4.08
2236 2582 3.567164 AGCAGCCTATAATGACATGCAAC 59.433 43.478 0.00 0.00 34.71 4.17
2237 2583 3.304928 GCAGCCTATAATGACATGCAACC 60.305 47.826 0.00 0.00 32.58 3.77
2238 2584 3.058708 CAGCCTATAATGACATGCAACCG 60.059 47.826 0.00 0.00 0.00 4.44
2239 2585 2.350772 GCCTATAATGACATGCAACCGC 60.351 50.000 0.00 0.00 39.24 5.68
2240 2586 2.096268 CCTATAATGACATGCAACCGCG 60.096 50.000 0.00 0.00 42.97 6.46
2241 2587 1.662517 ATAATGACATGCAACCGCGA 58.337 45.000 8.23 0.00 42.97 5.87
2242 2588 0.724549 TAATGACATGCAACCGCGAC 59.275 50.000 8.23 0.00 42.97 5.19
2243 2589 1.233950 AATGACATGCAACCGCGACA 61.234 50.000 8.23 0.00 42.97 4.35
2244 2590 1.233950 ATGACATGCAACCGCGACAA 61.234 50.000 8.23 0.00 42.97 3.18
2245 2591 1.154413 GACATGCAACCGCGACAAG 60.154 57.895 8.23 0.00 42.97 3.16
2246 2592 1.565156 GACATGCAACCGCGACAAGA 61.565 55.000 8.23 0.00 42.97 3.02
2247 2593 0.955428 ACATGCAACCGCGACAAGAT 60.955 50.000 8.23 0.00 42.97 2.40
2248 2594 0.168788 CATGCAACCGCGACAAGATT 59.831 50.000 8.23 0.00 42.97 2.40
2249 2595 0.881118 ATGCAACCGCGACAAGATTT 59.119 45.000 8.23 0.00 42.97 2.17
2250 2596 1.514003 TGCAACCGCGACAAGATTTA 58.486 45.000 8.23 0.00 42.97 1.40
2251 2597 1.874231 TGCAACCGCGACAAGATTTAA 59.126 42.857 8.23 0.00 42.97 1.52
2252 2598 2.239201 GCAACCGCGACAAGATTTAAC 58.761 47.619 8.23 0.00 0.00 2.01
2253 2599 2.492001 CAACCGCGACAAGATTTAACG 58.508 47.619 8.23 0.00 0.00 3.18
2254 2600 2.068837 ACCGCGACAAGATTTAACGA 57.931 45.000 8.23 0.00 0.00 3.85
2271 2617 2.356135 ACGAAAAACGCAGCCTATGAT 58.644 42.857 0.00 0.00 46.94 2.45
2277 2623 0.536724 ACGCAGCCTATGATGACACA 59.463 50.000 0.00 0.00 0.00 3.72
2290 2636 1.890876 TGACACACCAACCATGTAGC 58.109 50.000 0.00 0.00 0.00 3.58
2336 2682 4.739137 GCTGCAAACCAAACATGTCCTTAA 60.739 41.667 0.00 0.00 0.00 1.85
2337 2683 4.688021 TGCAAACCAAACATGTCCTTAAC 58.312 39.130 0.00 0.00 0.00 2.01
2364 2712 1.376609 CGGCCCTGCTTTACATGACC 61.377 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.627403 CCATCGTACTTCCTCTGTAAACTAATA 58.373 37.037 0.00 0.00 0.00 0.98
22 23 7.341256 TCCATCGTACTTCCTCTGTAAACTAAT 59.659 37.037 0.00 0.00 0.00 1.73
23 24 6.660521 TCCATCGTACTTCCTCTGTAAACTAA 59.339 38.462 0.00 0.00 0.00 2.24
24 25 6.182627 TCCATCGTACTTCCTCTGTAAACTA 58.817 40.000 0.00 0.00 0.00 2.24
25 26 5.014858 TCCATCGTACTTCCTCTGTAAACT 58.985 41.667 0.00 0.00 0.00 2.66
26 27 5.320549 TCCATCGTACTTCCTCTGTAAAC 57.679 43.478 0.00 0.00 0.00 2.01
27 28 5.337009 GGTTCCATCGTACTTCCTCTGTAAA 60.337 44.000 0.00 0.00 0.00 2.01
28 29 4.159135 GGTTCCATCGTACTTCCTCTGTAA 59.841 45.833 0.00 0.00 0.00 2.41
29 30 3.698040 GGTTCCATCGTACTTCCTCTGTA 59.302 47.826 0.00 0.00 0.00 2.74
30 31 2.496470 GGTTCCATCGTACTTCCTCTGT 59.504 50.000 0.00 0.00 0.00 3.41
31 32 2.761208 AGGTTCCATCGTACTTCCTCTG 59.239 50.000 0.00 0.00 0.00 3.35
32 33 3.103080 AGGTTCCATCGTACTTCCTCT 57.897 47.619 0.00 0.00 0.00 3.69
33 34 3.056035 ACAAGGTTCCATCGTACTTCCTC 60.056 47.826 0.00 0.00 0.00 3.71
34 35 2.904434 ACAAGGTTCCATCGTACTTCCT 59.096 45.455 0.00 0.00 0.00 3.36
35 36 3.329929 ACAAGGTTCCATCGTACTTCC 57.670 47.619 0.00 0.00 0.00 3.46
36 37 5.476614 ACTTACAAGGTTCCATCGTACTTC 58.523 41.667 0.00 0.00 0.00 3.01
37 38 5.479124 ACTTACAAGGTTCCATCGTACTT 57.521 39.130 0.00 0.00 0.00 2.24
38 39 5.479124 AACTTACAAGGTTCCATCGTACT 57.521 39.130 0.00 0.00 0.00 2.73
39 40 6.017687 ACAAAACTTACAAGGTTCCATCGTAC 60.018 38.462 0.00 0.00 34.15 3.67
40 41 6.056884 ACAAAACTTACAAGGTTCCATCGTA 58.943 36.000 0.00 0.00 34.15 3.43
41 42 4.885325 ACAAAACTTACAAGGTTCCATCGT 59.115 37.500 0.00 0.00 34.15 3.73
42 43 5.432885 ACAAAACTTACAAGGTTCCATCG 57.567 39.130 0.00 0.00 34.15 3.84
43 44 7.506328 AGTACAAAACTTACAAGGTTCCATC 57.494 36.000 0.00 0.00 34.15 3.51
44 45 7.891498 AAGTACAAAACTTACAAGGTTCCAT 57.109 32.000 0.00 0.00 46.85 3.41
57 58 9.634163 CTTAGTTTGGTGAAAAAGTACAAAACT 57.366 29.630 12.77 12.77 46.96 2.66
58 59 8.865978 CCTTAGTTTGGTGAAAAAGTACAAAAC 58.134 33.333 0.00 0.00 39.76 2.43
63 64 8.991243 AAAACCTTAGTTTGGTGAAAAAGTAC 57.009 30.769 0.00 0.00 45.54 2.73
67 68 7.672240 AGTGAAAACCTTAGTTTGGTGAAAAA 58.328 30.769 0.00 0.00 45.54 1.94
72 73 6.040247 GGAAAGTGAAAACCTTAGTTTGGTG 58.960 40.000 0.00 0.00 45.54 4.17
73 74 5.128171 GGGAAAGTGAAAACCTTAGTTTGGT 59.872 40.000 0.00 0.00 45.54 3.67
83 84 2.626266 ACCGATTGGGAAAGTGAAAACC 59.374 45.455 3.39 0.00 40.75 3.27
84 85 4.048504 CAACCGATTGGGAAAGTGAAAAC 58.951 43.478 3.39 0.00 40.75 2.43
86 87 3.067461 CACAACCGATTGGGAAAGTGAAA 59.933 43.478 3.39 0.00 42.35 2.69
97 98 5.277825 TGCTTTTTAAGTCACAACCGATTG 58.722 37.500 0.00 0.00 41.98 2.67
98 99 5.067283 ACTGCTTTTTAAGTCACAACCGATT 59.933 36.000 0.00 0.00 0.00 3.34
99 100 4.578928 ACTGCTTTTTAAGTCACAACCGAT 59.421 37.500 0.00 0.00 0.00 4.18
102 103 5.243426 TGACTGCTTTTTAAGTCACAACC 57.757 39.130 1.50 0.00 36.51 3.77
105 106 6.509418 AAGTTGACTGCTTTTTAAGTCACA 57.491 33.333 5.06 0.00 40.45 3.58
117 126 1.409064 TCTGTGTCGAAGTTGACTGCT 59.591 47.619 0.00 0.00 39.64 4.24
129 138 1.424403 TTTACGGTGCATCTGTGTCG 58.576 50.000 10.01 0.00 36.91 4.35
134 143 4.637483 ATTGGATTTTACGGTGCATCTG 57.363 40.909 0.00 0.00 0.00 2.90
138 147 5.707242 TGTAAATTGGATTTTACGGTGCA 57.293 34.783 0.00 0.00 42.41 4.57
139 148 6.809196 TGAATGTAAATTGGATTTTACGGTGC 59.191 34.615 0.00 0.00 42.41 5.01
140 149 7.810282 TGTGAATGTAAATTGGATTTTACGGTG 59.190 33.333 0.00 0.00 42.41 4.94
153 162 7.491048 ACAAGCTTTCGTTTGTGAATGTAAATT 59.509 29.630 0.00 0.00 42.03 1.82
158 167 4.096382 AGACAAGCTTTCGTTTGTGAATGT 59.904 37.500 0.00 0.00 43.36 2.71
159 168 4.438797 CAGACAAGCTTTCGTTTGTGAATG 59.561 41.667 0.00 0.00 43.36 2.67
165 174 4.014847 TCAACAGACAAGCTTTCGTTTG 57.985 40.909 0.00 0.72 37.37 2.93
169 178 8.581057 ACTATATATCAACAGACAAGCTTTCG 57.419 34.615 0.00 0.00 0.00 3.46
203 212 9.936329 TCCTAGTGCATAATCATATGGAGTATA 57.064 33.333 2.13 0.00 41.83 1.47
204 213 8.844865 TCCTAGTGCATAATCATATGGAGTAT 57.155 34.615 2.13 0.00 41.83 2.12
205 214 8.116026 TCTCCTAGTGCATAATCATATGGAGTA 58.884 37.037 2.13 5.25 40.50 2.59
206 215 6.956435 TCTCCTAGTGCATAATCATATGGAGT 59.044 38.462 2.13 3.68 43.46 3.85
207 216 7.093596 TGTCTCCTAGTGCATAATCATATGGAG 60.094 40.741 2.13 0.00 40.08 3.86
208 217 6.725834 TGTCTCCTAGTGCATAATCATATGGA 59.274 38.462 2.13 0.00 39.49 3.41
209 218 6.939622 TGTCTCCTAGTGCATAATCATATGG 58.060 40.000 2.13 0.00 39.49 2.74
210 219 7.544915 CACTGTCTCCTAGTGCATAATCATATG 59.455 40.741 0.00 0.00 39.09 1.78
211 220 7.452813 TCACTGTCTCCTAGTGCATAATCATAT 59.547 37.037 0.00 0.00 43.97 1.78
212 221 6.777580 TCACTGTCTCCTAGTGCATAATCATA 59.222 38.462 0.00 0.00 43.97 2.15
234 243 5.406780 CCTGGATAGATTAAGCAATCGTCAC 59.593 44.000 0.00 0.00 44.51 3.67
238 247 4.932200 GTCCCTGGATAGATTAAGCAATCG 59.068 45.833 0.00 0.00 44.51 3.34
242 251 3.572642 TCGTCCCTGGATAGATTAAGCA 58.427 45.455 0.00 0.00 0.00 3.91
243 252 4.499183 CATCGTCCCTGGATAGATTAAGC 58.501 47.826 0.00 0.00 0.00 3.09
289 298 4.078537 GGTCTCTCTAGATCTGCATGCTA 58.921 47.826 20.33 7.56 33.30 3.49
291 300 2.029110 GGGTCTCTCTAGATCTGCATGC 60.029 54.545 11.82 11.82 32.98 4.06
370 385 4.385825 TCTTAGTTTAGTTGTGTGGCCTG 58.614 43.478 3.32 0.00 0.00 4.85
391 406 7.969314 TGCTTGTTTATTTGTTTGTTTCCTTC 58.031 30.769 0.00 0.00 0.00 3.46
393 408 8.504812 AATGCTTGTTTATTTGTTTGTTTCCT 57.495 26.923 0.00 0.00 0.00 3.36
396 411 9.995957 GGTAAATGCTTGTTTATTTGTTTGTTT 57.004 25.926 0.00 0.00 0.00 2.83
397 412 8.616942 GGGTAAATGCTTGTTTATTTGTTTGTT 58.383 29.630 0.00 0.00 0.00 2.83
399 414 7.169982 TCGGGTAAATGCTTGTTTATTTGTTTG 59.830 33.333 0.00 0.00 0.00 2.93
400 415 7.210873 TCGGGTAAATGCTTGTTTATTTGTTT 58.789 30.769 0.00 0.00 0.00 2.83
422 439 0.721811 GCACGTACGAGATCGATCGG 60.722 60.000 24.41 17.02 46.91 4.18
472 492 2.430382 AATTGCTGCTGCTGTGGTGC 62.430 55.000 17.00 0.87 40.48 5.01
473 493 0.666274 CAATTGCTGCTGCTGTGGTG 60.666 55.000 17.00 4.38 40.48 4.17
475 495 0.109272 CTCAATTGCTGCTGCTGTGG 60.109 55.000 17.00 3.26 40.48 4.17
477 497 1.585006 GCTCAATTGCTGCTGCTGT 59.415 52.632 17.00 2.41 40.48 4.40
478 498 1.153823 GGCTCAATTGCTGCTGCTG 60.154 57.895 17.00 7.03 40.48 4.41
479 499 2.697761 CGGCTCAATTGCTGCTGCT 61.698 57.895 17.00 0.00 40.48 4.24
480 500 2.202570 CGGCTCAATTGCTGCTGC 60.203 61.111 18.07 8.89 40.20 5.25
484 504 2.796651 GGAGCGGCTCAATTGCTG 59.203 61.111 29.33 0.00 39.49 4.41
485 505 2.821366 CGGAGCGGCTCAATTGCT 60.821 61.111 29.33 0.00 42.73 3.91
498 518 0.377554 CACTAGTAGACGTGGCGGAG 59.622 60.000 3.59 0.00 0.00 4.63
499 519 1.651240 GCACTAGTAGACGTGGCGGA 61.651 60.000 3.59 0.00 0.00 5.54
500 520 1.226603 GCACTAGTAGACGTGGCGG 60.227 63.158 3.59 0.00 0.00 6.13
501 521 1.012086 TAGCACTAGTAGACGTGGCG 58.988 55.000 3.59 0.00 0.00 5.69
502 522 3.814283 ACTATAGCACTAGTAGACGTGGC 59.186 47.826 3.59 0.00 30.16 5.01
503 523 6.222389 AGTACTATAGCACTAGTAGACGTGG 58.778 44.000 3.64 0.00 35.43 4.94
504 524 6.922407 TGAGTACTATAGCACTAGTAGACGTG 59.078 42.308 5.57 0.00 35.43 4.49
505 525 6.922957 GTGAGTACTATAGCACTAGTAGACGT 59.077 42.308 5.57 0.00 35.43 4.34
514 534 3.478509 CCGAGGTGAGTACTATAGCACT 58.521 50.000 5.25 5.25 0.00 4.40
515 535 2.030981 GCCGAGGTGAGTACTATAGCAC 60.031 54.545 0.00 0.00 0.00 4.40
575 742 3.353557 CAGCACCACTCTACTACCACTA 58.646 50.000 0.00 0.00 0.00 2.74
576 743 2.171840 CAGCACCACTCTACTACCACT 58.828 52.381 0.00 0.00 0.00 4.00
577 744 1.404315 GCAGCACCACTCTACTACCAC 60.404 57.143 0.00 0.00 0.00 4.16
578 745 0.895530 GCAGCACCACTCTACTACCA 59.104 55.000 0.00 0.00 0.00 3.25
579 746 0.175989 GGCAGCACCACTCTACTACC 59.824 60.000 0.00 0.00 38.86 3.18
580 747 0.179134 CGGCAGCACCACTCTACTAC 60.179 60.000 0.00 0.00 39.03 2.73
658 825 1.643811 AGAGGGGTGAGAGCTCTAGTT 59.356 52.381 18.25 0.00 0.00 2.24
659 826 1.214424 GAGAGGGGTGAGAGCTCTAGT 59.786 57.143 18.25 0.00 0.00 2.57
663 830 0.755327 GAGGAGAGGGGTGAGAGCTC 60.755 65.000 5.27 5.27 0.00 4.09
664 831 1.309688 GAGGAGAGGGGTGAGAGCT 59.690 63.158 0.00 0.00 0.00 4.09
665 832 1.760480 GGAGGAGAGGGGTGAGAGC 60.760 68.421 0.00 0.00 0.00 4.09
666 833 1.075600 GGGAGGAGAGGGGTGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
667 834 2.637640 GGGGAGGAGAGGGGTGAGA 61.638 68.421 0.00 0.00 0.00 3.27
668 835 2.041405 GGGGAGGAGAGGGGTGAG 60.041 72.222 0.00 0.00 0.00 3.51
669 836 2.540910 AGGGGAGGAGAGGGGTGA 60.541 66.667 0.00 0.00 0.00 4.02
670 837 2.041405 GAGGGGAGGAGAGGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
671 838 3.369388 GGAGGGGAGGAGAGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
672 839 4.179599 GGGAGGGGAGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
673 840 3.039526 AGGGAGGGGAGGAGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
674 841 2.018086 AGAGGGAGGGGAGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
675 842 1.541672 GAGAGGGAGGGGAGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
676 843 2.387772 CGAGAGGGAGGGGAGGAGA 61.388 68.421 0.00 0.00 0.00 3.71
677 844 2.197324 CGAGAGGGAGGGGAGGAG 59.803 72.222 0.00 0.00 0.00 3.69
678 845 4.144727 GCGAGAGGGAGGGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
680 847 4.150454 AGGCGAGAGGGAGGGGAG 62.150 72.222 0.00 0.00 0.00 4.30
681 848 4.144727 GAGGCGAGAGGGAGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
683 850 4.150454 AGGAGGCGAGAGGGAGGG 62.150 72.222 0.00 0.00 0.00 4.30
684 851 2.837291 CAGGAGGCGAGAGGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
694 863 2.107953 CTTAGCGAGGCAGGAGGC 59.892 66.667 0.00 0.00 43.74 4.70
712 881 0.813210 GAAGATGAGGAAGCCAGCGG 60.813 60.000 0.00 0.00 0.00 5.52
713 882 0.177604 AGAAGATGAGGAAGCCAGCG 59.822 55.000 0.00 0.00 0.00 5.18
714 883 2.287769 GAAGAAGATGAGGAAGCCAGC 58.712 52.381 0.00 0.00 0.00 4.85
715 884 2.548875 CGAAGAAGATGAGGAAGCCAG 58.451 52.381 0.00 0.00 0.00 4.85
716 885 1.406069 GCGAAGAAGATGAGGAAGCCA 60.406 52.381 0.00 0.00 0.00 4.75
718 887 1.294857 GGCGAAGAAGATGAGGAAGC 58.705 55.000 0.00 0.00 0.00 3.86
719 888 1.484240 AGGGCGAAGAAGATGAGGAAG 59.516 52.381 0.00 0.00 0.00 3.46
737 947 2.074729 AGCTAGCTACCAGTACCAGG 57.925 55.000 17.69 0.58 0.00 4.45
740 950 4.463070 AGAACTAGCTAGCTACCAGTACC 58.537 47.826 20.67 13.50 0.00 3.34
741 951 4.211794 CGAGAACTAGCTAGCTACCAGTAC 59.788 50.000 20.67 12.27 0.00 2.73
742 952 4.378774 CGAGAACTAGCTAGCTACCAGTA 58.621 47.826 20.67 1.02 0.00 2.74
743 953 3.207778 CGAGAACTAGCTAGCTACCAGT 58.792 50.000 20.67 16.02 0.00 4.00
744 954 2.550606 CCGAGAACTAGCTAGCTACCAG 59.449 54.545 20.67 15.34 0.00 4.00
745 955 2.172082 TCCGAGAACTAGCTAGCTACCA 59.828 50.000 20.67 2.64 0.00 3.25
746 956 2.549329 GTCCGAGAACTAGCTAGCTACC 59.451 54.545 20.67 12.20 0.00 3.18
747 957 2.549329 GGTCCGAGAACTAGCTAGCTAC 59.451 54.545 20.67 11.25 0.00 3.58
748 958 2.806019 CGGTCCGAGAACTAGCTAGCTA 60.806 54.545 22.85 22.85 0.00 3.32
749 959 1.682740 GGTCCGAGAACTAGCTAGCT 58.317 55.000 23.12 23.12 0.00 3.32
772 982 2.033049 AGAGCTATATATAACGGGCGCG 59.967 50.000 22.69 22.69 0.00 6.86
774 984 3.874706 CGAGAGCTATATATAACGGGCG 58.125 50.000 0.00 0.00 0.00 6.13
832 1042 4.641645 TGGGGCGAGTGTGGCTTG 62.642 66.667 0.00 0.00 34.31 4.01
837 1060 2.111043 AGTTGTGGGGCGAGTGTG 59.889 61.111 0.00 0.00 0.00 3.82
844 1067 0.744771 GTAGCTAGCAGTTGTGGGGC 60.745 60.000 18.83 0.00 0.00 5.80
848 1071 3.193263 CAGATGGTAGCTAGCAGTTGTG 58.807 50.000 27.79 17.83 37.10 3.33
851 1074 1.139853 GGCAGATGGTAGCTAGCAGTT 59.860 52.381 27.79 14.54 37.10 3.16
852 1075 0.755686 GGCAGATGGTAGCTAGCAGT 59.244 55.000 27.79 16.45 37.10 4.40
855 1078 1.067213 GCTAGGCAGATGGTAGCTAGC 60.067 57.143 16.08 16.08 36.93 3.42
856 1079 2.524306 AGCTAGGCAGATGGTAGCTAG 58.476 52.381 0.00 0.00 46.10 3.42
857 1080 2.685106 AGCTAGGCAGATGGTAGCTA 57.315 50.000 1.26 0.00 46.10 3.32
858 1081 3.548793 AGCTAGGCAGATGGTAGCT 57.451 52.632 0.00 0.00 43.76 3.32
859 1082 2.611722 GCTTAGCTAGGCAGATGGTAGC 60.612 54.545 21.88 6.95 39.64 3.58
860 1083 2.896685 AGCTTAGCTAGGCAGATGGTAG 59.103 50.000 27.38 4.15 36.99 3.18
861 1084 2.964209 AGCTTAGCTAGGCAGATGGTA 58.036 47.619 27.38 0.00 36.99 3.25
862 1085 1.799933 AGCTTAGCTAGGCAGATGGT 58.200 50.000 27.38 4.97 36.99 3.55
863 1086 5.221422 GGATATAGCTTAGCTAGGCAGATGG 60.221 48.000 27.38 0.00 44.66 3.51
864 1087 5.598005 AGGATATAGCTTAGCTAGGCAGATG 59.402 44.000 27.38 0.00 44.66 2.90
865 1088 5.776358 AGGATATAGCTTAGCTAGGCAGAT 58.224 41.667 27.38 21.14 44.66 2.90
871 1101 6.183360 GCAGGTGTAGGATATAGCTTAGCTAG 60.183 46.154 19.15 2.47 44.66 3.42
887 1117 1.669115 ACGCAGCTTGCAGGTGTAG 60.669 57.895 14.07 11.54 45.36 2.74
888 1118 1.960763 CACGCAGCTTGCAGGTGTA 60.961 57.895 14.07 0.00 45.36 2.90
889 1119 3.282157 CACGCAGCTTGCAGGTGT 61.282 61.111 14.07 4.30 45.36 4.16
890 1120 3.282157 ACACGCAGCTTGCAGGTG 61.282 61.111 0.00 9.95 45.36 4.00
892 1122 4.034258 CCACACGCAGCTTGCAGG 62.034 66.667 0.00 0.00 45.36 4.85
911 1141 1.687146 TAGCTGAGGCCTGGGAGTG 60.687 63.158 12.00 0.00 39.73 3.51
912 1142 1.687493 GTAGCTGAGGCCTGGGAGT 60.687 63.158 12.00 0.00 39.73 3.85
913 1143 1.684386 CTGTAGCTGAGGCCTGGGAG 61.684 65.000 12.00 3.98 39.73 4.30
914 1144 1.687146 CTGTAGCTGAGGCCTGGGA 60.687 63.158 12.00 0.00 39.73 4.37
915 1145 2.906458 CTGTAGCTGAGGCCTGGG 59.094 66.667 12.00 3.00 39.73 4.45
916 1146 2.188994 GCTGTAGCTGAGGCCTGG 59.811 66.667 12.00 3.45 39.73 4.45
947 1177 3.719214 GCAGTGGGTAGCGTATGC 58.281 61.111 0.00 0.00 43.24 3.14
959 1189 2.740055 GAGTCACAGCCCGCAGTG 60.740 66.667 5.92 5.92 35.22 3.66
961 1191 4.363990 ACGAGTCACAGCCCGCAG 62.364 66.667 0.00 0.00 0.00 5.18
962 1192 4.662961 CACGAGTCACAGCCCGCA 62.663 66.667 0.00 0.00 0.00 5.69
966 1196 2.807045 CGCTCACGAGTCACAGCC 60.807 66.667 0.00 0.00 43.93 4.85
987 1217 1.930188 CGACATGCTCGACTCGACG 60.930 63.158 10.86 0.00 46.14 5.12
988 1218 0.858135 GACGACATGCTCGACTCGAC 60.858 60.000 19.74 6.34 46.14 4.20
1119 1352 2.110967 CCTGTGAGCTCCATTGCGG 61.111 63.158 12.15 2.90 38.13 5.69
1145 1378 4.637534 GCTGTTCATGGAAAATCAGCTAGA 59.362 41.667 7.00 0.00 42.98 2.43
1146 1379 4.201990 GGCTGTTCATGGAAAATCAGCTAG 60.202 45.833 12.63 0.00 44.81 3.42
1153 1420 2.232941 CAGCTGGCTGTTCATGGAAAAT 59.767 45.455 13.76 0.00 39.10 1.82
1184 1451 0.325602 TCAGTGACTCCATGCATGCA 59.674 50.000 25.04 25.04 0.00 3.96
1206 1497 1.455383 AACAACAGAAGCCCGCCAAG 61.455 55.000 0.00 0.00 0.00 3.61
1209 1500 2.644992 CAACAACAGAAGCCCGCC 59.355 61.111 0.00 0.00 0.00 6.13
1212 1503 1.662044 CCTGCAACAACAGAAGCCC 59.338 57.895 0.00 0.00 40.25 5.19
1213 1504 1.109323 ACCCTGCAACAACAGAAGCC 61.109 55.000 0.00 0.00 40.25 4.35
1214 1505 0.746659 AACCCTGCAACAACAGAAGC 59.253 50.000 0.00 0.00 40.25 3.86
1216 1507 1.021202 CGAACCCTGCAACAACAGAA 58.979 50.000 0.00 0.00 40.25 3.02
1218 1509 1.654220 CCGAACCCTGCAACAACAG 59.346 57.895 0.00 0.00 37.42 3.16
1220 1511 2.335011 GCCGAACCCTGCAACAAC 59.665 61.111 0.00 0.00 0.00 3.32
1221 1512 3.283684 CGCCGAACCCTGCAACAA 61.284 61.111 0.00 0.00 0.00 2.83
1383 1676 3.008408 GGACGGAGGGAGAGAGGA 58.992 66.667 0.00 0.00 0.00 3.71
1384 1677 2.517402 CGGACGGAGGGAGAGAGG 60.517 72.222 0.00 0.00 0.00 3.69
1385 1678 1.820481 GACGGACGGAGGGAGAGAG 60.820 68.421 0.00 0.00 0.00 3.20
1386 1679 2.271497 GACGGACGGAGGGAGAGA 59.729 66.667 0.00 0.00 0.00 3.10
1387 1680 2.829458 GGACGGACGGAGGGAGAG 60.829 72.222 0.00 0.00 0.00 3.20
1388 1681 4.790962 CGGACGGACGGAGGGAGA 62.791 72.222 0.00 0.00 0.00 3.71
1397 1690 1.067582 GATGGATGGACGGACGGAC 59.932 63.158 0.00 0.00 0.00 4.79
1409 1702 2.186903 GTGCACCGACCGATGGAT 59.813 61.111 5.22 0.00 0.00 3.41
1410 1703 3.307108 TGTGCACCGACCGATGGA 61.307 61.111 15.69 0.00 0.00 3.41
1438 1731 1.266466 GAACGAGCTTGGTACGTAGC 58.734 55.000 17.67 17.67 39.31 3.58
1440 1733 0.168788 CCGAACGAGCTTGGTACGTA 59.831 55.000 5.79 0.00 39.31 3.57
1442 1735 2.442188 GCCGAACGAGCTTGGTACG 61.442 63.158 5.79 7.69 0.00 3.67
1443 1736 2.098831 GGCCGAACGAGCTTGGTAC 61.099 63.158 5.79 0.00 0.00 3.34
1475 1768 1.521450 CCCGTAGTATGATCGGCCGT 61.521 60.000 27.15 12.96 42.48 5.68
1476 1769 1.211969 CCCGTAGTATGATCGGCCG 59.788 63.158 22.12 22.12 42.48 6.13
1506 1815 4.871910 CTAGCCAGCCAGCCCAGC 62.872 72.222 0.00 0.00 0.00 4.85
1507 1816 4.871910 GCTAGCCAGCCAGCCCAG 62.872 72.222 2.29 0.00 42.37 4.45
1521 1838 2.025155 GGCTCACACACTAGCTAGCTA 58.975 52.381 22.85 22.85 38.80 3.32
1535 1852 2.278332 ACCTCAAGGAAAAGGCTCAC 57.722 50.000 2.30 0.00 38.94 3.51
1536 1853 3.312736 AAACCTCAAGGAAAAGGCTCA 57.687 42.857 2.30 0.00 38.94 4.26
1538 1855 3.432186 GCAAAAACCTCAAGGAAAAGGCT 60.432 43.478 2.30 0.00 38.94 4.58
1539 1856 2.872245 GCAAAAACCTCAAGGAAAAGGC 59.128 45.455 2.30 0.00 38.94 4.35
1541 1858 6.488817 CAAATGCAAAAACCTCAAGGAAAAG 58.511 36.000 2.30 0.00 38.94 2.27
1580 1907 7.558444 AGCCAAACTAATCAACCCGATTAATTA 59.442 33.333 0.00 0.00 44.22 1.40
1581 1908 6.379988 AGCCAAACTAATCAACCCGATTAATT 59.620 34.615 0.00 0.00 44.22 1.40
1582 1909 5.891551 AGCCAAACTAATCAACCCGATTAAT 59.108 36.000 0.00 0.00 44.22 1.40
1583 1910 5.258051 AGCCAAACTAATCAACCCGATTAA 58.742 37.500 0.00 0.00 44.22 1.40
1585 1912 3.697166 AGCCAAACTAATCAACCCGATT 58.303 40.909 0.00 0.00 46.36 3.34
1586 1913 3.366052 AGCCAAACTAATCAACCCGAT 57.634 42.857 0.00 0.00 35.12 4.18
1587 1914 2.871096 AGCCAAACTAATCAACCCGA 57.129 45.000 0.00 0.00 0.00 5.14
1588 1915 2.817258 TGAAGCCAAACTAATCAACCCG 59.183 45.455 0.00 0.00 0.00 5.28
1589 1916 4.381932 CCATGAAGCCAAACTAATCAACCC 60.382 45.833 0.00 0.00 0.00 4.11
1590 1917 4.747810 CCATGAAGCCAAACTAATCAACC 58.252 43.478 0.00 0.00 0.00 3.77
1593 1920 3.700538 AGCCATGAAGCCAAACTAATCA 58.299 40.909 0.00 0.00 0.00 2.57
1594 1921 4.427312 CAAGCCATGAAGCCAAACTAATC 58.573 43.478 0.00 0.00 0.00 1.75
1595 1922 3.196254 CCAAGCCATGAAGCCAAACTAAT 59.804 43.478 0.00 0.00 0.00 1.73
1596 1923 2.562298 CCAAGCCATGAAGCCAAACTAA 59.438 45.455 0.00 0.00 0.00 2.24
1597 1924 2.170166 CCAAGCCATGAAGCCAAACTA 58.830 47.619 0.00 0.00 0.00 2.24
1598 1925 0.971386 CCAAGCCATGAAGCCAAACT 59.029 50.000 0.00 0.00 0.00 2.66
1599 1926 0.968405 TCCAAGCCATGAAGCCAAAC 59.032 50.000 0.00 0.00 0.00 2.93
1600 1927 1.941377 ATCCAAGCCATGAAGCCAAA 58.059 45.000 0.00 0.00 0.00 3.28
1601 1928 1.551430 CAATCCAAGCCATGAAGCCAA 59.449 47.619 0.00 0.00 0.00 4.52
1602 1929 1.187974 CAATCCAAGCCATGAAGCCA 58.812 50.000 0.00 0.00 0.00 4.75
1603 1930 0.462789 CCAATCCAAGCCATGAAGCC 59.537 55.000 0.00 0.00 0.00 4.35
1604 1931 1.477553 TCCAATCCAAGCCATGAAGC 58.522 50.000 0.00 0.00 0.00 3.86
1605 1932 3.740141 GCAATCCAATCCAAGCCATGAAG 60.740 47.826 0.00 0.00 0.00 3.02
1606 1933 2.168936 GCAATCCAATCCAAGCCATGAA 59.831 45.455 0.00 0.00 0.00 2.57
1607 1934 1.758280 GCAATCCAATCCAAGCCATGA 59.242 47.619 0.00 0.00 0.00 3.07
1608 1935 1.537348 CGCAATCCAATCCAAGCCATG 60.537 52.381 0.00 0.00 0.00 3.66
1609 1936 0.748450 CGCAATCCAATCCAAGCCAT 59.252 50.000 0.00 0.00 0.00 4.40
1610 1937 0.323269 TCGCAATCCAATCCAAGCCA 60.323 50.000 0.00 0.00 0.00 4.75
1611 1938 0.383231 CTCGCAATCCAATCCAAGCC 59.617 55.000 0.00 0.00 0.00 4.35
1612 1939 1.332997 CTCTCGCAATCCAATCCAAGC 59.667 52.381 0.00 0.00 0.00 4.01
1613 1940 1.945394 CCTCTCGCAATCCAATCCAAG 59.055 52.381 0.00 0.00 0.00 3.61
1689 2024 2.958818 ACCACCGATAGATCCTTGCTA 58.041 47.619 0.00 0.00 39.76 3.49
1690 2025 1.794714 ACCACCGATAGATCCTTGCT 58.205 50.000 0.00 0.00 39.76 3.91
1691 2026 2.622064 AACCACCGATAGATCCTTGC 57.378 50.000 0.00 0.00 39.76 4.01
1692 2027 7.568199 AATTAAAACCACCGATAGATCCTTG 57.432 36.000 0.00 0.00 39.76 3.61
1693 2028 8.269317 TGTAATTAAAACCACCGATAGATCCTT 58.731 33.333 0.00 0.00 39.76 3.36
1694 2029 7.713942 GTGTAATTAAAACCACCGATAGATCCT 59.286 37.037 0.00 0.00 39.76 3.24
1695 2030 7.306983 CGTGTAATTAAAACCACCGATAGATCC 60.307 40.741 0.00 0.00 39.76 3.36
1696 2031 7.436080 TCGTGTAATTAAAACCACCGATAGATC 59.564 37.037 0.00 0.00 39.76 2.75
1697 2032 7.267128 TCGTGTAATTAAAACCACCGATAGAT 58.733 34.615 0.00 0.00 39.76 1.98
1698 2033 6.629128 TCGTGTAATTAAAACCACCGATAGA 58.371 36.000 0.00 0.00 39.76 1.98
1699 2034 6.753279 TCTCGTGTAATTAAAACCACCGATAG 59.247 38.462 0.00 0.00 0.00 2.08
1700 2035 6.629128 TCTCGTGTAATTAAAACCACCGATA 58.371 36.000 0.00 0.00 0.00 2.92
1768 2103 1.819632 CGTGATGCCAAGCCCTACC 60.820 63.158 0.00 0.00 0.00 3.18
1980 2318 5.348986 ACACAACACACTACTTGAGTACTG 58.651 41.667 0.00 0.00 35.64 2.74
2029 2367 4.210331 CCCTAGCTAATTGTGCTCCAAAT 58.790 43.478 10.39 0.00 41.46 2.32
2071 2413 7.442666 CCCTAGTATTCATTTCTTAAGGCAGTC 59.557 40.741 1.85 0.00 0.00 3.51
2072 2414 7.283329 CCCTAGTATTCATTTCTTAAGGCAGT 58.717 38.462 1.85 0.00 0.00 4.40
2079 2425 7.573710 ACACATGCCCTAGTATTCATTTCTTA 58.426 34.615 0.00 0.00 0.00 2.10
2092 2438 2.513753 TGAACCAAACACATGCCCTAG 58.486 47.619 0.00 0.00 0.00 3.02
2100 2446 6.151985 ACAAAGTTAGTCATGAACCAAACACA 59.848 34.615 0.00 0.00 30.35 3.72
2101 2447 6.560711 ACAAAGTTAGTCATGAACCAAACAC 58.439 36.000 0.00 0.00 30.35 3.32
2148 2494 0.676466 CACTTTGTATGGGCAGCCGA 60.676 55.000 5.00 0.42 0.00 5.54
2161 2507 3.564511 CCACTTTATTCGCCACACTTTG 58.435 45.455 0.00 0.00 0.00 2.77
2175 2521 1.885887 GCAGTTGTGATGGCCACTTTA 59.114 47.619 8.16 0.00 45.86 1.85
2179 2525 1.965930 TCGCAGTTGTGATGGCCAC 60.966 57.895 8.16 2.36 45.88 5.01
2186 2532 4.572795 TGTTAAATCTTGTCGCAGTTGTGA 59.427 37.500 0.00 0.00 0.00 3.58
2212 2558 3.817084 TGCATGTCATTATAGGCTGCTTC 59.183 43.478 0.00 0.00 0.00 3.86
2213 2559 3.824133 TGCATGTCATTATAGGCTGCTT 58.176 40.909 0.00 0.00 0.00 3.91
2214 2560 3.497103 TGCATGTCATTATAGGCTGCT 57.503 42.857 0.00 0.00 0.00 4.24
2215 2561 3.304928 GGTTGCATGTCATTATAGGCTGC 60.305 47.826 0.00 0.00 0.00 5.25
2216 2562 3.058708 CGGTTGCATGTCATTATAGGCTG 60.059 47.826 0.00 0.00 0.00 4.85
2217 2563 3.141398 CGGTTGCATGTCATTATAGGCT 58.859 45.455 0.00 0.00 0.00 4.58
2218 2564 2.350772 GCGGTTGCATGTCATTATAGGC 60.351 50.000 0.00 0.00 42.15 3.93
2219 2565 2.096268 CGCGGTTGCATGTCATTATAGG 60.096 50.000 0.00 0.00 42.97 2.57
2220 2566 2.799978 TCGCGGTTGCATGTCATTATAG 59.200 45.455 6.13 0.00 42.97 1.31
2221 2567 2.542178 GTCGCGGTTGCATGTCATTATA 59.458 45.455 6.13 0.00 42.97 0.98
2222 2568 1.330521 GTCGCGGTTGCATGTCATTAT 59.669 47.619 6.13 0.00 42.97 1.28
2223 2569 0.724549 GTCGCGGTTGCATGTCATTA 59.275 50.000 6.13 0.00 42.97 1.90
2224 2570 1.233950 TGTCGCGGTTGCATGTCATT 61.234 50.000 6.13 0.00 42.97 2.57
2225 2571 1.233950 TTGTCGCGGTTGCATGTCAT 61.234 50.000 6.13 0.00 42.97 3.06
2226 2572 1.840630 CTTGTCGCGGTTGCATGTCA 61.841 55.000 6.13 0.00 42.97 3.58
2227 2573 1.154413 CTTGTCGCGGTTGCATGTC 60.154 57.895 6.13 0.00 42.97 3.06
2228 2574 0.955428 ATCTTGTCGCGGTTGCATGT 60.955 50.000 6.13 0.00 42.97 3.21
2229 2575 0.168788 AATCTTGTCGCGGTTGCATG 59.831 50.000 6.13 3.59 42.97 4.06
2230 2576 0.881118 AAATCTTGTCGCGGTTGCAT 59.119 45.000 6.13 0.00 42.97 3.96
2231 2577 1.514003 TAAATCTTGTCGCGGTTGCA 58.486 45.000 6.13 0.00 42.97 4.08
2232 2578 2.239201 GTTAAATCTTGTCGCGGTTGC 58.761 47.619 6.13 0.00 37.91 4.17
2233 2579 2.156117 TCGTTAAATCTTGTCGCGGTTG 59.844 45.455 6.13 0.00 0.00 3.77
2234 2580 2.406130 TCGTTAAATCTTGTCGCGGTT 58.594 42.857 6.13 0.00 0.00 4.44
2235 2581 2.068837 TCGTTAAATCTTGTCGCGGT 57.931 45.000 6.13 0.00 0.00 5.68
2236 2582 3.443054 TTTCGTTAAATCTTGTCGCGG 57.557 42.857 6.13 0.00 0.00 6.46
2237 2583 4.201142 CGTTTTTCGTTAAATCTTGTCGCG 60.201 41.667 0.00 0.00 34.52 5.87
2238 2584 4.429432 GCGTTTTTCGTTAAATCTTGTCGC 60.429 41.667 0.00 0.00 42.13 5.19
2239 2585 4.667061 TGCGTTTTTCGTTAAATCTTGTCG 59.333 37.500 0.00 0.00 42.13 4.35
2240 2586 5.386019 GCTGCGTTTTTCGTTAAATCTTGTC 60.386 40.000 0.00 0.00 42.13 3.18
2241 2587 4.439776 GCTGCGTTTTTCGTTAAATCTTGT 59.560 37.500 0.00 0.00 42.13 3.16
2242 2588 4.143618 GGCTGCGTTTTTCGTTAAATCTTG 60.144 41.667 0.00 0.00 42.13 3.02
2243 2589 3.978855 GGCTGCGTTTTTCGTTAAATCTT 59.021 39.130 0.00 0.00 42.13 2.40
2244 2590 3.252458 AGGCTGCGTTTTTCGTTAAATCT 59.748 39.130 0.00 0.00 42.13 2.40
2245 2591 3.561503 AGGCTGCGTTTTTCGTTAAATC 58.438 40.909 0.00 0.00 42.13 2.17
2246 2592 3.636282 AGGCTGCGTTTTTCGTTAAAT 57.364 38.095 0.00 0.00 42.13 1.40
2247 2593 4.213694 TCATAGGCTGCGTTTTTCGTTAAA 59.786 37.500 0.00 0.00 42.13 1.52
2248 2594 3.747010 TCATAGGCTGCGTTTTTCGTTAA 59.253 39.130 0.00 0.00 42.13 2.01
2249 2595 3.327626 TCATAGGCTGCGTTTTTCGTTA 58.672 40.909 0.00 0.00 42.13 3.18
2250 2596 2.147958 TCATAGGCTGCGTTTTTCGTT 58.852 42.857 0.00 0.00 42.13 3.85
2251 2597 1.803334 TCATAGGCTGCGTTTTTCGT 58.197 45.000 0.00 0.00 42.13 3.85
2252 2598 2.351418 TCATCATAGGCTGCGTTTTTCG 59.649 45.455 0.00 0.00 43.12 3.46
2253 2599 3.126858 TGTCATCATAGGCTGCGTTTTTC 59.873 43.478 0.00 0.00 0.00 2.29
2254 2600 3.081061 TGTCATCATAGGCTGCGTTTTT 58.919 40.909 0.00 0.00 0.00 1.94
2260 2606 1.303309 GGTGTGTCATCATAGGCTGC 58.697 55.000 0.00 0.00 0.00 5.25
2271 2617 1.419762 AGCTACATGGTTGGTGTGTCA 59.580 47.619 0.00 0.00 0.00 3.58
2336 2682 0.251165 AAGCAGGGCCGTAACAATGT 60.251 50.000 0.00 0.00 0.00 2.71
2337 2683 0.887933 AAAGCAGGGCCGTAACAATG 59.112 50.000 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.