Multiple sequence alignment - TraesCS2A01G521200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G521200 chr2A 100.000 3071 0 0 1 3071 744079586 744082656 0.000000e+00 5672.0
1 TraesCS2A01G521200 chr2D 94.914 2143 95 4 934 3071 611530317 611528184 0.000000e+00 3341.0
2 TraesCS2A01G521200 chr2D 73.862 1186 257 32 935 2098 609935842 609934688 1.020000e-114 424.0
3 TraesCS2A01G521200 chr2D 84.173 139 16 6 934 1072 611244726 611244858 2.490000e-26 130.0
4 TraesCS2A01G521200 chr2B 90.650 631 54 5 934 1561 746170116 746170744 0.000000e+00 833.0
5 TraesCS2A01G521200 chr2B 74.832 1188 236 44 935 2098 744834958 744833810 2.140000e-131 479.0
6 TraesCS2A01G521200 chr2B 74.331 1196 246 40 935 2098 744520642 744519476 4.670000e-123 451.0
7 TraesCS2A01G521200 chr2B 77.485 342 59 11 934 1269 745034232 745034561 4.040000e-44 189.0
8 TraesCS2A01G521200 chr1B 90.541 444 34 7 2 439 684910444 684910885 5.710000e-162 580.0
9 TraesCS2A01G521200 chr1B 88.514 444 41 7 2 439 96627034 96627473 2.100000e-146 529.0
10 TraesCS2A01G521200 chr1D 89.823 452 38 7 2 448 8095688 8096136 9.550000e-160 573.0
11 TraesCS2A01G521200 chr1D 88.889 189 16 3 443 628 8096232 8096418 8.570000e-56 228.0
12 TraesCS2A01G521200 chr3B 87.550 498 49 10 2 487 781983413 781982917 5.750000e-157 564.0
13 TraesCS2A01G521200 chr6B 88.739 444 43 6 2 440 510244220 510244661 1.250000e-148 536.0
14 TraesCS2A01G521200 chr6B 87.810 443 48 5 2 440 80643147 80642707 5.870000e-142 514.0
15 TraesCS2A01G521200 chr4B 88.739 444 43 6 2 439 640458659 640459101 1.250000e-148 536.0
16 TraesCS2A01G521200 chr4B 94.444 36 2 0 467 502 627180241 627180276 4.280000e-04 56.5
17 TraesCS2A01G521200 chr3A 88.636 440 45 4 2 438 727912724 727912287 5.830000e-147 531.0
18 TraesCS2A01G521200 chr5B 88.262 443 46 5 2 440 648030707 648030267 2.710000e-145 525.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G521200 chr2A 744079586 744082656 3070 False 5672.0 5672 100.000 1 3071 1 chr2A.!!$F1 3070
1 TraesCS2A01G521200 chr2D 611528184 611530317 2133 True 3341.0 3341 94.914 934 3071 1 chr2D.!!$R2 2137
2 TraesCS2A01G521200 chr2D 609934688 609935842 1154 True 424.0 424 73.862 935 2098 1 chr2D.!!$R1 1163
3 TraesCS2A01G521200 chr2B 746170116 746170744 628 False 833.0 833 90.650 934 1561 1 chr2B.!!$F2 627
4 TraesCS2A01G521200 chr2B 744833810 744834958 1148 True 479.0 479 74.832 935 2098 1 chr2B.!!$R2 1163
5 TraesCS2A01G521200 chr2B 744519476 744520642 1166 True 451.0 451 74.331 935 2098 1 chr2B.!!$R1 1163
6 TraesCS2A01G521200 chr1D 8095688 8096418 730 False 400.5 573 89.356 2 628 2 chr1D.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 539 0.031857 AGATGCGATTCCAGCGAGAG 59.968 55.0 0.00 0.0 37.44 3.20 F
615 618 0.035439 AAATCCAACGGCTCCGACAT 60.035 50.0 15.95 0.0 42.83 3.06 F
665 668 0.099436 GCGCAGATTAGTGCCCAAAG 59.901 55.0 0.30 0.0 40.62 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1395 0.749454 GCATCAGATTGCTCGGGGTT 60.749 55.000 0.00 0.0 39.57 4.11 R
1820 1841 1.745141 GCAGATCGAGGTCTTGCCAAT 60.745 52.381 0.00 0.0 40.61 3.16 R
2505 2540 1.965414 TGGATTCCTCCTAAGGTGCA 58.035 50.000 3.95 0.0 43.82 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 1.795170 CTGCAACCCCGTTGAAGGTG 61.795 60.000 8.65 0.00 43.45 4.00
46 49 1.990160 AACCCCGTTGAAGGTGCTCA 61.990 55.000 0.00 0.00 36.19 4.26
83 86 2.676748 AGTTGCAATCCCCAAGTCAAA 58.323 42.857 0.59 0.00 0.00 2.69
86 89 0.247460 GCAATCCCCAAGTCAAAGGC 59.753 55.000 0.00 0.00 0.00 4.35
89 92 1.789576 ATCCCCAAGTCAAAGGCGGT 61.790 55.000 0.00 0.00 0.00 5.68
141 144 3.363178 GACAAGAACTTTGCTGGAAACG 58.637 45.455 0.00 0.00 0.00 3.60
168 171 2.324860 GTTTTTGCTACAACCATCGCC 58.675 47.619 0.00 0.00 0.00 5.54
210 213 5.533482 AGACGGATTTGCTACATCTATCAC 58.467 41.667 0.00 0.00 0.00 3.06
214 217 2.134201 TTGCTACATCTATCACGGCG 57.866 50.000 4.80 4.80 0.00 6.46
215 218 1.314730 TGCTACATCTATCACGGCGA 58.685 50.000 16.62 0.00 0.00 5.54
265 268 1.300620 CTGTTGCAACCGTCCTCGA 60.301 57.895 26.14 4.49 39.71 4.04
266 269 1.284982 CTGTTGCAACCGTCCTCGAG 61.285 60.000 26.14 5.13 39.71 4.04
269 272 0.599204 TTGCAACCGTCCTCGAGTTC 60.599 55.000 12.31 2.88 39.71 3.01
277 280 2.277969 CGTCCTCGAGTTCTGCTACTA 58.722 52.381 12.31 0.00 39.71 1.82
280 283 2.026542 TCCTCGAGTTCTGCTACTACCA 60.027 50.000 12.31 0.00 0.00 3.25
282 285 1.743958 TCGAGTTCTGCTACTACCAGC 59.256 52.381 0.00 0.00 42.15 4.85
298 301 0.096976 CAGCGTGGGATTTTGCTACG 59.903 55.000 0.80 0.80 35.56 3.51
299 302 0.321298 AGCGTGGGATTTTGCTACGT 60.321 50.000 6.76 0.00 35.56 3.57
300 303 0.096454 GCGTGGGATTTTGCTACGTC 59.904 55.000 6.76 0.00 37.12 4.34
301 304 0.725117 CGTGGGATTTTGCTACGTCC 59.275 55.000 0.00 0.00 0.00 4.79
302 305 1.816074 GTGGGATTTTGCTACGTCCA 58.184 50.000 0.00 0.00 32.31 4.02
303 306 2.365582 GTGGGATTTTGCTACGTCCAT 58.634 47.619 0.00 0.00 32.31 3.41
304 307 2.354821 GTGGGATTTTGCTACGTCCATC 59.645 50.000 0.00 0.00 32.31 3.51
305 308 1.947456 GGGATTTTGCTACGTCCATCC 59.053 52.381 0.00 0.00 32.31 3.51
306 309 2.639065 GGATTTTGCTACGTCCATCCA 58.361 47.619 0.00 0.00 31.99 3.41
307 310 3.214328 GGATTTTGCTACGTCCATCCAT 58.786 45.455 0.00 0.00 31.99 3.41
308 311 3.003689 GGATTTTGCTACGTCCATCCATG 59.996 47.826 0.00 0.00 31.99 3.66
322 325 0.615331 TCCATGGTGGAGTCTTGAGC 59.385 55.000 12.58 0.00 42.67 4.26
323 326 0.325933 CCATGGTGGAGTCTTGAGCA 59.674 55.000 2.57 0.00 40.96 4.26
324 327 1.678123 CCATGGTGGAGTCTTGAGCAG 60.678 57.143 2.57 0.00 40.96 4.24
325 328 0.035630 ATGGTGGAGTCTTGAGCAGC 60.036 55.000 0.00 0.00 0.00 5.25
326 329 1.739562 GGTGGAGTCTTGAGCAGCG 60.740 63.158 0.00 0.00 0.00 5.18
327 330 1.290324 GTGGAGTCTTGAGCAGCGA 59.710 57.895 0.00 0.00 0.00 4.93
328 331 1.011451 GTGGAGTCTTGAGCAGCGAC 61.011 60.000 0.00 0.00 0.00 5.19
329 332 1.803519 GGAGTCTTGAGCAGCGACG 60.804 63.158 0.00 0.00 33.10 5.12
330 333 1.803519 GAGTCTTGAGCAGCGACGG 60.804 63.158 0.00 0.00 33.10 4.79
331 334 3.482783 GTCTTGAGCAGCGACGGC 61.483 66.667 0.00 0.00 40.37 5.68
349 352 2.687436 GGCGACGACGACGAATTG 59.313 61.111 22.94 0.00 42.66 2.32
350 353 2.018270 GCGACGACGACGAATTGC 59.982 61.111 22.94 4.30 42.66 3.56
351 354 2.434134 GCGACGACGACGAATTGCT 61.434 57.895 22.94 0.00 42.66 3.91
352 355 1.337150 CGACGACGACGAATTGCTG 59.663 57.895 15.32 0.00 42.66 4.41
353 356 1.057361 GACGACGACGAATTGCTGC 59.943 57.895 15.32 0.00 42.66 5.25
354 357 1.614227 GACGACGACGAATTGCTGCA 61.614 55.000 15.32 0.00 42.66 4.41
355 358 1.218875 ACGACGACGAATTGCTGCAA 61.219 50.000 18.43 18.43 42.66 4.08
356 359 0.785708 CGACGACGAATTGCTGCAAC 60.786 55.000 18.51 5.02 42.66 4.17
357 360 0.452784 GACGACGAATTGCTGCAACC 60.453 55.000 18.51 11.48 0.00 3.77
358 361 1.163420 ACGACGAATTGCTGCAACCA 61.163 50.000 18.51 0.00 0.00 3.67
359 362 0.168788 CGACGAATTGCTGCAACCAT 59.831 50.000 18.51 7.05 0.00 3.55
360 363 1.791555 CGACGAATTGCTGCAACCATC 60.792 52.381 18.51 14.61 0.00 3.51
361 364 1.470098 GACGAATTGCTGCAACCATCT 59.530 47.619 18.51 0.00 0.00 2.90
362 365 1.888512 ACGAATTGCTGCAACCATCTT 59.111 42.857 18.51 7.58 0.00 2.40
363 366 2.297033 ACGAATTGCTGCAACCATCTTT 59.703 40.909 18.51 6.79 0.00 2.52
364 367 2.919229 CGAATTGCTGCAACCATCTTTC 59.081 45.455 18.51 14.53 0.00 2.62
365 368 2.642139 ATTGCTGCAACCATCTTTCG 57.358 45.000 18.51 0.00 0.00 3.46
366 369 1.317613 TTGCTGCAACCATCTTTCGT 58.682 45.000 11.69 0.00 0.00 3.85
367 370 1.317613 TGCTGCAACCATCTTTCGTT 58.682 45.000 0.00 0.00 0.00 3.85
368 371 1.680735 TGCTGCAACCATCTTTCGTTT 59.319 42.857 0.00 0.00 0.00 3.60
369 372 2.100584 TGCTGCAACCATCTTTCGTTTT 59.899 40.909 0.00 0.00 0.00 2.43
370 373 3.123050 GCTGCAACCATCTTTCGTTTTT 58.877 40.909 0.00 0.00 0.00 1.94
371 374 3.060339 GCTGCAACCATCTTTCGTTTTTG 60.060 43.478 0.00 0.00 0.00 2.44
372 375 2.863137 TGCAACCATCTTTCGTTTTTGC 59.137 40.909 0.00 0.00 38.65 3.68
373 376 3.123050 GCAACCATCTTTCGTTTTTGCT 58.877 40.909 0.00 0.00 35.95 3.91
374 377 4.202060 TGCAACCATCTTTCGTTTTTGCTA 60.202 37.500 0.00 0.00 38.89 3.49
375 378 4.148174 GCAACCATCTTTCGTTTTTGCTAC 59.852 41.667 0.00 0.00 35.95 3.58
376 379 4.141855 ACCATCTTTCGTTTTTGCTACG 57.858 40.909 0.00 0.00 40.23 3.51
377 380 3.810941 ACCATCTTTCGTTTTTGCTACGA 59.189 39.130 0.00 0.00 45.34 3.43
378 381 4.148891 CCATCTTTCGTTTTTGCTACGAC 58.851 43.478 0.00 0.00 46.50 4.34
379 382 3.865224 TCTTTCGTTTTTGCTACGACC 57.135 42.857 0.00 0.00 46.50 4.79
380 383 2.219216 TCTTTCGTTTTTGCTACGACCG 59.781 45.455 0.00 0.00 46.50 4.79
381 384 0.860533 TTCGTTTTTGCTACGACCGG 59.139 50.000 0.00 0.00 46.50 5.28
382 385 1.154543 CGTTTTTGCTACGACCGGC 60.155 57.895 0.00 0.00 41.33 6.13
383 386 1.833434 CGTTTTTGCTACGACCGGCA 61.833 55.000 0.00 0.00 41.33 5.69
384 387 0.385098 GTTTTTGCTACGACCGGCAC 60.385 55.000 0.00 0.00 38.23 5.01
385 388 1.508808 TTTTTGCTACGACCGGCACC 61.509 55.000 0.00 0.00 38.23 5.01
386 389 4.728102 TTGCTACGACCGGCACCG 62.728 66.667 0.00 5.53 38.23 4.94
398 401 3.443045 GCACCGGAGTTGCCATGG 61.443 66.667 9.46 7.63 35.94 3.66
399 402 3.443045 CACCGGAGTTGCCATGGC 61.443 66.667 30.54 30.54 42.35 4.40
400 403 4.740822 ACCGGAGTTGCCATGGCC 62.741 66.667 33.44 19.25 41.09 5.36
402 405 4.776322 CGGAGTTGCCATGGCCGA 62.776 66.667 33.44 19.55 44.43 5.54
403 406 2.124151 GGAGTTGCCATGGCCGAT 60.124 61.111 33.44 18.83 41.09 4.18
404 407 1.148273 GGAGTTGCCATGGCCGATA 59.852 57.895 33.44 12.76 41.09 2.92
405 408 0.465460 GGAGTTGCCATGGCCGATAA 60.465 55.000 33.44 18.39 41.09 1.75
406 409 0.947244 GAGTTGCCATGGCCGATAAG 59.053 55.000 33.44 0.00 41.09 1.73
407 410 1.103398 AGTTGCCATGGCCGATAAGC 61.103 55.000 33.44 16.48 41.09 3.09
408 411 2.186160 TTGCCATGGCCGATAAGCG 61.186 57.895 33.44 0.00 41.09 4.68
409 412 2.591715 GCCATGGCCGATAAGCGT 60.592 61.111 27.24 0.00 38.67 5.07
410 413 2.896801 GCCATGGCCGATAAGCGTG 61.897 63.158 27.24 0.00 38.67 5.34
411 414 2.253758 CCATGGCCGATAAGCGTGG 61.254 63.158 0.00 0.00 38.67 4.94
412 415 2.111043 ATGGCCGATAAGCGTGGG 59.889 61.111 0.00 0.00 38.67 4.61
423 426 4.778143 GCGTGGGCGGTCAAGGAT 62.778 66.667 0.00 0.00 38.78 3.24
424 427 2.819595 CGTGGGCGGTCAAGGATG 60.820 66.667 0.00 0.00 0.00 3.51
425 428 3.134127 GTGGGCGGTCAAGGATGC 61.134 66.667 0.00 0.00 0.00 3.91
426 429 4.776322 TGGGCGGTCAAGGATGCG 62.776 66.667 0.00 0.00 0.00 4.73
427 430 4.467084 GGGCGGTCAAGGATGCGA 62.467 66.667 0.00 0.00 0.00 5.10
428 431 3.195698 GGCGGTCAAGGATGCGAC 61.196 66.667 0.00 0.00 0.00 5.19
429 432 2.434185 GCGGTCAAGGATGCGACA 60.434 61.111 0.00 0.00 33.66 4.35
430 433 2.740714 GCGGTCAAGGATGCGACAC 61.741 63.158 0.00 0.00 33.66 3.67
431 434 2.100631 CGGTCAAGGATGCGACACC 61.101 63.158 0.00 0.00 33.66 4.16
432 435 2.100631 GGTCAAGGATGCGACACCG 61.101 63.158 0.00 0.00 33.66 4.94
433 436 1.080093 GTCAAGGATGCGACACCGA 60.080 57.895 0.00 0.00 38.22 4.69
434 437 1.078759 GTCAAGGATGCGACACCGAG 61.079 60.000 0.00 0.00 38.22 4.63
435 438 2.125512 AAGGATGCGACACCGAGC 60.126 61.111 0.00 0.00 38.22 5.03
437 440 3.188786 GGATGCGACACCGAGCAC 61.189 66.667 0.00 0.00 46.83 4.40
438 441 3.545481 GATGCGACACCGAGCACG 61.545 66.667 0.00 0.00 46.83 5.34
448 451 4.803426 CGAGCACGGCAGAGGACC 62.803 72.222 0.00 0.00 35.72 4.46
457 460 4.180946 CAGAGGACCGCCGTCGAG 62.181 72.222 0.00 0.00 40.17 4.04
460 463 4.816984 AGGACCGCCGTCGAGGAT 62.817 66.667 6.70 0.00 45.00 3.24
461 464 4.570663 GGACCGCCGTCGAGGATG 62.571 72.222 6.70 0.00 45.00 3.51
462 465 4.570663 GACCGCCGTCGAGGATGG 62.571 72.222 6.70 10.08 45.00 3.51
466 469 4.222847 GCCGTCGAGGATGGGGAC 62.223 72.222 6.70 0.00 45.00 4.46
487 490 4.873129 CGACGAGGATGGCCACCG 62.873 72.222 8.16 12.49 38.12 4.94
488 491 4.530857 GACGAGGATGGCCACCGG 62.531 72.222 8.16 11.69 36.99 5.28
490 493 4.227134 CGAGGATGGCCACCGGAG 62.227 72.222 8.16 0.00 36.29 4.63
503 506 2.443016 CGGAGGGGAGAGGAGGTG 60.443 72.222 0.00 0.00 0.00 4.00
504 507 2.766229 GGAGGGGAGAGGAGGTGC 60.766 72.222 0.00 0.00 0.00 5.01
505 508 2.039624 GAGGGGAGAGGAGGTGCA 59.960 66.667 0.00 0.00 0.00 4.57
506 509 2.284995 AGGGGAGAGGAGGTGCAC 60.285 66.667 8.80 8.80 0.00 4.57
507 510 2.607750 GGGGAGAGGAGGTGCACA 60.608 66.667 20.43 0.00 0.00 4.57
508 511 2.665603 GGGAGAGGAGGTGCACAC 59.334 66.667 20.43 11.82 0.00 3.82
517 520 4.980805 GGTGCACACCGAGCGGAA 62.981 66.667 20.43 0.00 42.29 4.30
518 521 3.414700 GTGCACACCGAGCGGAAG 61.415 66.667 16.83 9.96 38.96 3.46
519 522 3.611674 TGCACACCGAGCGGAAGA 61.612 61.111 16.83 0.00 38.96 2.87
520 523 2.125512 GCACACCGAGCGGAAGAT 60.126 61.111 16.83 0.00 38.96 2.40
521 524 2.456119 GCACACCGAGCGGAAGATG 61.456 63.158 16.83 5.82 38.96 2.90
522 525 2.125512 ACACCGAGCGGAAGATGC 60.126 61.111 16.83 0.00 38.96 3.91
523 526 3.257561 CACCGAGCGGAAGATGCG 61.258 66.667 16.83 0.00 38.96 4.73
524 527 3.449227 ACCGAGCGGAAGATGCGA 61.449 61.111 16.83 0.00 38.96 5.10
525 528 2.028190 CCGAGCGGAAGATGCGAT 59.972 61.111 2.00 0.00 37.50 4.58
526 529 1.592669 CCGAGCGGAAGATGCGATT 60.593 57.895 2.00 0.00 37.50 3.34
527 530 1.552348 CCGAGCGGAAGATGCGATTC 61.552 60.000 2.00 0.00 37.50 2.52
528 531 1.552348 CGAGCGGAAGATGCGATTCC 61.552 60.000 4.70 4.70 42.41 3.01
529 532 0.530650 GAGCGGAAGATGCGATTCCA 60.531 55.000 13.05 0.00 45.50 3.53
530 533 0.531532 AGCGGAAGATGCGATTCCAG 60.532 55.000 13.05 7.94 45.50 3.86
531 534 1.937391 CGGAAGATGCGATTCCAGC 59.063 57.895 13.05 0.00 45.50 4.85
532 535 1.825285 CGGAAGATGCGATTCCAGCG 61.825 60.000 13.05 0.00 45.50 5.18
533 536 0.530650 GGAAGATGCGATTCCAGCGA 60.531 55.000 8.97 0.00 44.74 4.93
534 537 0.857935 GAAGATGCGATTCCAGCGAG 59.142 55.000 0.00 0.00 37.44 5.03
535 538 0.461548 AAGATGCGATTCCAGCGAGA 59.538 50.000 0.00 0.00 37.44 4.04
536 539 0.031857 AGATGCGATTCCAGCGAGAG 59.968 55.000 0.00 0.00 37.44 3.20
537 540 0.943359 GATGCGATTCCAGCGAGAGG 60.943 60.000 0.00 0.00 37.44 3.69
538 541 1.395045 ATGCGATTCCAGCGAGAGGA 61.395 55.000 0.00 0.00 37.44 3.71
544 547 1.633774 TTCCAGCGAGAGGAAGAAGT 58.366 50.000 0.00 0.00 40.11 3.01
545 548 1.633774 TCCAGCGAGAGGAAGAAGTT 58.366 50.000 0.00 0.00 30.71 2.66
546 549 1.273606 TCCAGCGAGAGGAAGAAGTTG 59.726 52.381 0.00 0.00 30.71 3.16
547 550 1.001406 CCAGCGAGAGGAAGAAGTTGT 59.999 52.381 0.00 0.00 0.00 3.32
548 551 2.064762 CAGCGAGAGGAAGAAGTTGTG 58.935 52.381 0.00 0.00 0.00 3.33
549 552 1.001406 AGCGAGAGGAAGAAGTTGTGG 59.999 52.381 0.00 0.00 0.00 4.17
550 553 1.941668 GCGAGAGGAAGAAGTTGTGGG 60.942 57.143 0.00 0.00 0.00 4.61
551 554 1.338200 CGAGAGGAAGAAGTTGTGGGG 60.338 57.143 0.00 0.00 0.00 4.96
552 555 0.402121 AGAGGAAGAAGTTGTGGGGC 59.598 55.000 0.00 0.00 0.00 5.80
553 556 0.110486 GAGGAAGAAGTTGTGGGGCA 59.890 55.000 0.00 0.00 0.00 5.36
554 557 0.555769 AGGAAGAAGTTGTGGGGCAA 59.444 50.000 0.00 0.00 34.16 4.52
555 558 1.063266 AGGAAGAAGTTGTGGGGCAAA 60.063 47.619 0.00 0.00 39.03 3.68
556 559 1.068588 GGAAGAAGTTGTGGGGCAAAC 59.931 52.381 0.00 0.00 39.03 2.93
557 560 1.068588 GAAGAAGTTGTGGGGCAAACC 59.931 52.381 0.00 0.00 39.03 3.27
558 561 1.106944 AGAAGTTGTGGGGCAAACCG 61.107 55.000 0.00 0.00 41.60 4.44
559 562 1.380650 AAGTTGTGGGGCAAACCGT 60.381 52.632 0.00 0.00 41.60 4.83
560 563 0.973496 AAGTTGTGGGGCAAACCGTT 60.973 50.000 0.00 0.00 41.60 4.44
561 564 0.973496 AGTTGTGGGGCAAACCGTTT 60.973 50.000 0.00 0.00 41.60 3.60
562 565 0.108089 GTTGTGGGGCAAACCGTTTT 60.108 50.000 0.00 0.00 41.60 2.43
563 566 0.613777 TTGTGGGGCAAACCGTTTTT 59.386 45.000 0.00 0.00 41.60 1.94
564 567 1.481871 TGTGGGGCAAACCGTTTTTA 58.518 45.000 0.00 0.00 41.60 1.52
565 568 2.040178 TGTGGGGCAAACCGTTTTTAT 58.960 42.857 0.00 0.00 41.60 1.40
566 569 2.434702 TGTGGGGCAAACCGTTTTTATT 59.565 40.909 0.00 0.00 41.60 1.40
567 570 3.118371 TGTGGGGCAAACCGTTTTTATTT 60.118 39.130 0.00 0.00 41.60 1.40
568 571 3.878103 GTGGGGCAAACCGTTTTTATTTT 59.122 39.130 0.00 0.00 41.60 1.82
569 572 4.024725 GTGGGGCAAACCGTTTTTATTTTC 60.025 41.667 0.00 0.00 41.60 2.29
570 573 3.184783 GGGGCAAACCGTTTTTATTTTCG 59.815 43.478 0.00 0.00 41.60 3.46
571 574 3.363182 GGGCAAACCGTTTTTATTTTCGC 60.363 43.478 0.00 0.00 36.48 4.70
572 575 3.363182 GGCAAACCGTTTTTATTTTCGCC 60.363 43.478 0.00 0.00 0.00 5.54
573 576 3.659620 GCAAACCGTTTTTATTTTCGCCG 60.660 43.478 0.00 0.00 0.00 6.46
574 577 2.334971 ACCGTTTTTATTTTCGCCGG 57.665 45.000 0.00 0.00 39.75 6.13
575 578 1.878734 ACCGTTTTTATTTTCGCCGGA 59.121 42.857 5.05 0.00 37.43 5.14
576 579 2.488937 ACCGTTTTTATTTTCGCCGGAT 59.511 40.909 5.05 0.00 37.43 4.18
577 580 3.103007 CCGTTTTTATTTTCGCCGGATC 58.897 45.455 5.05 0.00 36.12 3.36
578 581 3.103007 CGTTTTTATTTTCGCCGGATCC 58.897 45.455 5.05 0.00 0.00 3.36
579 582 3.426426 CGTTTTTATTTTCGCCGGATCCA 60.426 43.478 13.41 0.00 0.00 3.41
580 583 4.487019 GTTTTTATTTTCGCCGGATCCAA 58.513 39.130 13.41 0.00 0.00 3.53
581 584 4.993029 TTTTATTTTCGCCGGATCCAAT 57.007 36.364 13.41 5.29 0.00 3.16
582 585 3.980646 TTATTTTCGCCGGATCCAATG 57.019 42.857 13.41 0.13 0.00 2.82
583 586 1.032014 ATTTTCGCCGGATCCAATGG 58.968 50.000 13.41 6.15 0.00 3.16
584 587 1.662438 TTTTCGCCGGATCCAATGGC 61.662 55.000 16.89 16.89 45.39 4.40
585 588 4.562425 TCGCCGGATCCAATGGCC 62.562 66.667 19.91 0.00 46.12 5.36
587 590 4.521292 GCCGGATCCAATGGCCCA 62.521 66.667 16.21 0.00 43.06 5.36
588 591 2.519302 CCGGATCCAATGGCCCAC 60.519 66.667 13.41 0.00 0.00 4.61
589 592 2.901840 CGGATCCAATGGCCCACG 60.902 66.667 13.41 2.14 0.00 4.94
590 593 3.219198 GGATCCAATGGCCCACGC 61.219 66.667 6.95 0.00 0.00 5.34
591 594 3.585990 GATCCAATGGCCCACGCG 61.586 66.667 3.53 3.53 35.02 6.01
592 595 4.108299 ATCCAATGGCCCACGCGA 62.108 61.111 15.93 0.00 35.02 5.87
595 598 3.499737 CAATGGCCCACGCGACTC 61.500 66.667 15.93 0.00 35.02 3.36
596 599 4.015406 AATGGCCCACGCGACTCA 62.015 61.111 15.93 3.84 35.02 3.41
597 600 3.545124 AATGGCCCACGCGACTCAA 62.545 57.895 15.93 0.00 35.02 3.02
598 601 3.545124 ATGGCCCACGCGACTCAAA 62.545 57.895 15.93 0.00 35.02 2.69
599 602 2.746277 GGCCCACGCGACTCAAAT 60.746 61.111 15.93 0.00 35.02 2.32
600 603 2.750888 GGCCCACGCGACTCAAATC 61.751 63.158 15.93 0.00 35.02 2.17
601 604 2.750888 GCCCACGCGACTCAAATCC 61.751 63.158 15.93 0.00 0.00 3.01
602 605 1.375396 CCCACGCGACTCAAATCCA 60.375 57.895 15.93 0.00 0.00 3.41
603 606 0.953471 CCCACGCGACTCAAATCCAA 60.953 55.000 15.93 0.00 0.00 3.53
604 607 0.165944 CCACGCGACTCAAATCCAAC 59.834 55.000 15.93 0.00 0.00 3.77
605 608 0.179250 CACGCGACTCAAATCCAACG 60.179 55.000 15.93 0.00 0.00 4.10
606 609 1.289109 ACGCGACTCAAATCCAACGG 61.289 55.000 15.93 0.00 0.00 4.44
607 610 1.134694 GCGACTCAAATCCAACGGC 59.865 57.895 0.00 0.00 0.00 5.68
608 611 1.298859 GCGACTCAAATCCAACGGCT 61.299 55.000 0.00 0.00 0.00 5.52
609 612 0.721718 CGACTCAAATCCAACGGCTC 59.278 55.000 0.00 0.00 0.00 4.70
610 613 1.087501 GACTCAAATCCAACGGCTCC 58.912 55.000 0.00 0.00 0.00 4.70
611 614 0.673644 ACTCAAATCCAACGGCTCCG 60.674 55.000 6.79 6.79 46.03 4.63
612 615 0.391130 CTCAAATCCAACGGCTCCGA 60.391 55.000 15.95 0.00 42.83 4.55
613 616 0.672401 TCAAATCCAACGGCTCCGAC 60.672 55.000 15.95 0.00 42.83 4.79
614 617 0.953471 CAAATCCAACGGCTCCGACA 60.953 55.000 15.95 0.00 42.83 4.35
615 618 0.035439 AAATCCAACGGCTCCGACAT 60.035 50.000 15.95 0.00 42.83 3.06
616 619 0.744414 AATCCAACGGCTCCGACATG 60.744 55.000 15.95 10.26 42.83 3.21
617 620 1.613317 ATCCAACGGCTCCGACATGA 61.613 55.000 15.95 6.24 42.83 3.07
618 621 1.153369 CCAACGGCTCCGACATGAT 60.153 57.895 15.95 0.00 42.83 2.45
619 622 1.154205 CCAACGGCTCCGACATGATC 61.154 60.000 15.95 0.00 42.83 2.92
628 631 3.309675 GACATGATCGGCCGAACG 58.690 61.111 34.66 21.94 0.00 3.95
629 632 2.202878 ACATGATCGGCCGAACGG 60.203 61.111 34.66 26.03 38.57 4.44
630 633 2.202878 CATGATCGGCCGAACGGT 60.203 61.111 34.66 16.72 37.65 4.83
631 634 1.813753 CATGATCGGCCGAACGGTT 60.814 57.895 34.66 16.25 37.65 4.44
632 635 1.813753 ATGATCGGCCGAACGGTTG 60.814 57.895 34.66 0.00 37.65 3.77
633 636 3.192922 GATCGGCCGAACGGTTGG 61.193 66.667 34.66 0.85 37.65 3.77
634 637 4.770874 ATCGGCCGAACGGTTGGG 62.771 66.667 34.66 16.59 37.65 4.12
656 659 2.969238 CAGGCCGGCGCAGATTAG 60.969 66.667 22.54 0.00 36.38 1.73
657 660 3.470888 AGGCCGGCGCAGATTAGT 61.471 61.111 22.54 0.00 36.38 2.24
658 661 3.272334 GGCCGGCGCAGATTAGTG 61.272 66.667 22.54 0.00 36.38 2.74
659 662 3.941836 GCCGGCGCAGATTAGTGC 61.942 66.667 12.58 0.00 44.00 4.40
663 666 3.903783 GCGCAGATTAGTGCCCAA 58.096 55.556 0.30 0.00 40.62 4.12
664 667 2.179764 GCGCAGATTAGTGCCCAAA 58.820 52.632 0.30 0.00 40.62 3.28
665 668 0.099436 GCGCAGATTAGTGCCCAAAG 59.901 55.000 0.30 0.00 40.62 2.77
666 669 1.737838 CGCAGATTAGTGCCCAAAGA 58.262 50.000 0.00 0.00 40.62 2.52
667 670 2.083774 CGCAGATTAGTGCCCAAAGAA 58.916 47.619 0.00 0.00 40.62 2.52
668 671 2.487762 CGCAGATTAGTGCCCAAAGAAA 59.512 45.455 0.00 0.00 40.62 2.52
669 672 3.057596 CGCAGATTAGTGCCCAAAGAAAA 60.058 43.478 0.00 0.00 40.62 2.29
670 673 4.558496 CGCAGATTAGTGCCCAAAGAAAAA 60.558 41.667 0.00 0.00 40.62 1.94
671 674 4.686091 GCAGATTAGTGCCCAAAGAAAAAC 59.314 41.667 0.00 0.00 37.49 2.43
672 675 5.230182 CAGATTAGTGCCCAAAGAAAAACC 58.770 41.667 0.00 0.00 0.00 3.27
673 676 3.719173 TTAGTGCCCAAAGAAAAACCG 57.281 42.857 0.00 0.00 0.00 4.44
674 677 1.480789 AGTGCCCAAAGAAAAACCGT 58.519 45.000 0.00 0.00 0.00 4.83
675 678 2.657143 AGTGCCCAAAGAAAAACCGTA 58.343 42.857 0.00 0.00 0.00 4.02
676 679 3.025262 AGTGCCCAAAGAAAAACCGTAA 58.975 40.909 0.00 0.00 0.00 3.18
677 680 3.067601 AGTGCCCAAAGAAAAACCGTAAG 59.932 43.478 0.00 0.00 0.00 2.34
678 681 3.067040 GTGCCCAAAGAAAAACCGTAAGA 59.933 43.478 0.00 0.00 43.02 2.10
679 682 3.700038 TGCCCAAAGAAAAACCGTAAGAA 59.300 39.130 0.00 0.00 43.02 2.52
680 683 4.159879 TGCCCAAAGAAAAACCGTAAGAAA 59.840 37.500 0.00 0.00 43.02 2.52
681 684 4.505191 GCCCAAAGAAAAACCGTAAGAAAC 59.495 41.667 0.00 0.00 43.02 2.78
692 695 3.169207 CGTAAGAAACGCTGAAACCTG 57.831 47.619 0.00 0.00 46.10 4.00
693 696 2.542595 CGTAAGAAACGCTGAAACCTGT 59.457 45.455 0.00 0.00 46.10 4.00
694 697 3.603857 CGTAAGAAACGCTGAAACCTGTG 60.604 47.826 0.00 0.00 46.10 3.66
695 698 2.038387 AGAAACGCTGAAACCTGTGT 57.962 45.000 0.00 0.00 0.00 3.72
696 699 2.365582 AGAAACGCTGAAACCTGTGTT 58.634 42.857 0.00 0.00 37.66 3.32
697 700 8.787526 CGTAAGAAACGCTGAAACCTGTGTTT 62.788 42.308 11.73 11.73 46.10 2.83
698 701 3.192633 AGAAACGCTGAAACCTGTGTTTT 59.807 39.130 12.69 4.23 44.57 2.43
699 702 3.586100 AACGCTGAAACCTGTGTTTTT 57.414 38.095 0.00 0.00 44.57 1.94
723 726 2.863132 TTTTTAGAGTGGCCGGCTAA 57.137 45.000 28.56 13.90 0.00 3.09
724 727 2.863132 TTTTAGAGTGGCCGGCTAAA 57.137 45.000 28.56 19.20 33.62 1.85
725 728 2.396590 TTTAGAGTGGCCGGCTAAAG 57.603 50.000 28.56 0.00 32.22 1.85
726 729 1.563924 TTAGAGTGGCCGGCTAAAGA 58.436 50.000 28.56 3.34 0.00 2.52
727 730 0.822164 TAGAGTGGCCGGCTAAAGAC 59.178 55.000 28.56 14.85 0.00 3.01
734 737 3.849953 CGGCTAAAGACGTGCGCC 61.850 66.667 4.18 0.00 42.66 6.53
735 738 2.740826 GGCTAAAGACGTGCGCCA 60.741 61.111 4.18 0.00 40.41 5.69
736 739 2.106683 GGCTAAAGACGTGCGCCAT 61.107 57.895 4.18 0.00 40.41 4.40
737 740 1.348594 GCTAAAGACGTGCGCCATC 59.651 57.895 4.18 0.00 0.00 3.51
738 741 2.006772 CTAAAGACGTGCGCCATCC 58.993 57.895 4.18 0.00 0.00 3.51
739 742 0.739462 CTAAAGACGTGCGCCATCCA 60.739 55.000 4.18 0.00 0.00 3.41
740 743 1.017177 TAAAGACGTGCGCCATCCAC 61.017 55.000 4.18 0.00 0.00 4.02
741 744 3.529341 AAGACGTGCGCCATCCACA 62.529 57.895 4.18 0.00 32.85 4.17
742 745 3.788766 GACGTGCGCCATCCACAC 61.789 66.667 4.18 0.00 32.85 3.82
743 746 4.314440 ACGTGCGCCATCCACACT 62.314 61.111 4.18 0.00 32.85 3.55
744 747 3.792047 CGTGCGCCATCCACACTG 61.792 66.667 4.18 0.00 32.85 3.66
745 748 2.669569 GTGCGCCATCCACACTGT 60.670 61.111 4.18 0.00 33.50 3.55
746 749 1.375396 GTGCGCCATCCACACTGTA 60.375 57.895 4.18 0.00 33.50 2.74
747 750 1.375396 TGCGCCATCCACACTGTAC 60.375 57.895 4.18 0.00 0.00 2.90
748 751 1.079127 GCGCCATCCACACTGTACT 60.079 57.895 0.00 0.00 0.00 2.73
749 752 0.174845 GCGCCATCCACACTGTACTA 59.825 55.000 0.00 0.00 0.00 1.82
750 753 1.202533 GCGCCATCCACACTGTACTAT 60.203 52.381 0.00 0.00 0.00 2.12
751 754 2.473816 CGCCATCCACACTGTACTATG 58.526 52.381 0.00 0.00 0.00 2.23
752 755 2.803133 CGCCATCCACACTGTACTATGG 60.803 54.545 10.35 10.35 37.52 2.74
753 756 2.838736 CCATCCACACTGTACTATGGC 58.161 52.381 0.00 0.00 31.87 4.40
754 757 2.485479 CCATCCACACTGTACTATGGCC 60.485 54.545 0.00 0.00 31.87 5.36
755 758 1.200519 TCCACACTGTACTATGGCCC 58.799 55.000 0.00 0.00 31.87 5.80
756 759 0.908910 CCACACTGTACTATGGCCCA 59.091 55.000 0.00 0.00 0.00 5.36
757 760 1.134401 CCACACTGTACTATGGCCCAG 60.134 57.143 0.00 0.78 0.00 4.45
758 761 0.541863 ACACTGTACTATGGCCCAGC 59.458 55.000 0.00 0.00 0.00 4.85
776 779 3.131850 CCAGCCCATGGGTTTATCC 57.868 57.895 31.58 14.03 46.36 2.59
777 780 0.261402 CCAGCCCATGGGTTTATCCA 59.739 55.000 31.58 0.00 46.36 3.41
778 781 1.696063 CAGCCCATGGGTTTATCCAG 58.304 55.000 31.58 9.32 40.56 3.86
779 782 0.106015 AGCCCATGGGTTTATCCAGC 60.106 55.000 31.58 13.84 40.56 4.85
780 783 0.396974 GCCCATGGGTTTATCCAGCA 60.397 55.000 31.58 0.00 40.56 4.41
781 784 1.696063 CCCATGGGTTTATCCAGCAG 58.304 55.000 23.93 0.00 40.56 4.24
782 785 1.696063 CCATGGGTTTATCCAGCAGG 58.304 55.000 2.85 0.00 40.56 4.85
783 786 1.035139 CATGGGTTTATCCAGCAGGC 58.965 55.000 0.00 0.00 40.56 4.85
784 787 0.466189 ATGGGTTTATCCAGCAGGCG 60.466 55.000 0.00 0.00 40.56 5.52
785 788 1.223487 GGGTTTATCCAGCAGGCGA 59.777 57.895 0.00 0.00 38.11 5.54
786 789 0.179018 GGGTTTATCCAGCAGGCGAT 60.179 55.000 0.00 0.00 38.11 4.58
787 790 1.230324 GGTTTATCCAGCAGGCGATC 58.770 55.000 0.00 0.00 35.97 3.69
788 791 1.230324 GTTTATCCAGCAGGCGATCC 58.770 55.000 0.00 0.00 33.74 3.36
789 792 0.249868 TTTATCCAGCAGGCGATCCG 60.250 55.000 0.00 0.00 37.47 4.18
790 793 1.399744 TTATCCAGCAGGCGATCCGT 61.400 55.000 0.00 0.00 37.47 4.69
791 794 0.538746 TATCCAGCAGGCGATCCGTA 60.539 55.000 0.00 0.00 37.47 4.02
792 795 1.188219 ATCCAGCAGGCGATCCGTAT 61.188 55.000 0.00 0.00 37.47 3.06
793 796 0.538746 TCCAGCAGGCGATCCGTATA 60.539 55.000 0.00 0.00 37.47 1.47
794 797 0.109086 CCAGCAGGCGATCCGTATAG 60.109 60.000 0.00 0.00 37.47 1.31
795 798 0.881796 CAGCAGGCGATCCGTATAGA 59.118 55.000 0.00 0.00 37.47 1.98
796 799 1.474478 CAGCAGGCGATCCGTATAGAT 59.526 52.381 0.00 0.00 37.47 1.98
797 800 2.094494 CAGCAGGCGATCCGTATAGATT 60.094 50.000 0.00 0.00 37.47 2.40
798 801 2.094494 AGCAGGCGATCCGTATAGATTG 60.094 50.000 0.00 0.00 37.47 2.67
799 802 2.352814 GCAGGCGATCCGTATAGATTGT 60.353 50.000 0.00 0.00 37.47 2.71
800 803 3.861131 GCAGGCGATCCGTATAGATTGTT 60.861 47.826 0.00 0.00 37.47 2.83
801 804 4.307432 CAGGCGATCCGTATAGATTGTTT 58.693 43.478 0.00 0.00 37.47 2.83
802 805 4.750098 CAGGCGATCCGTATAGATTGTTTT 59.250 41.667 0.00 0.00 37.47 2.43
803 806 5.236478 CAGGCGATCCGTATAGATTGTTTTT 59.764 40.000 0.00 0.00 37.47 1.94
827 830 8.648557 TTTGAAACTTCGATCTGTATAGATGG 57.351 34.615 6.72 5.94 43.63 3.51
828 831 7.348080 TGAAACTTCGATCTGTATAGATGGT 57.652 36.000 6.72 0.00 43.63 3.55
829 832 7.203218 TGAAACTTCGATCTGTATAGATGGTG 58.797 38.462 6.72 6.29 43.63 4.17
830 833 5.713792 ACTTCGATCTGTATAGATGGTGG 57.286 43.478 6.72 5.97 43.63 4.61
831 834 5.386060 ACTTCGATCTGTATAGATGGTGGA 58.614 41.667 6.72 0.00 43.63 4.02
832 835 5.475220 ACTTCGATCTGTATAGATGGTGGAG 59.525 44.000 6.72 8.21 43.63 3.86
833 836 5.242795 TCGATCTGTATAGATGGTGGAGA 57.757 43.478 6.72 0.00 43.63 3.71
834 837 5.631119 TCGATCTGTATAGATGGTGGAGAA 58.369 41.667 6.72 0.00 43.63 2.87
835 838 5.707764 TCGATCTGTATAGATGGTGGAGAAG 59.292 44.000 6.72 0.00 43.63 2.85
836 839 5.105957 CGATCTGTATAGATGGTGGAGAAGG 60.106 48.000 6.72 0.00 43.63 3.46
837 840 5.144159 TCTGTATAGATGGTGGAGAAGGT 57.856 43.478 0.00 0.00 0.00 3.50
838 841 6.275692 TCTGTATAGATGGTGGAGAAGGTA 57.724 41.667 0.00 0.00 0.00 3.08
839 842 6.679542 TCTGTATAGATGGTGGAGAAGGTAA 58.320 40.000 0.00 0.00 0.00 2.85
840 843 7.130099 TCTGTATAGATGGTGGAGAAGGTAAA 58.870 38.462 0.00 0.00 0.00 2.01
841 844 7.287927 TCTGTATAGATGGTGGAGAAGGTAAAG 59.712 40.741 0.00 0.00 0.00 1.85
842 845 7.130099 TGTATAGATGGTGGAGAAGGTAAAGA 58.870 38.462 0.00 0.00 0.00 2.52
843 846 7.789831 TGTATAGATGGTGGAGAAGGTAAAGAT 59.210 37.037 0.00 0.00 0.00 2.40
844 847 9.310449 GTATAGATGGTGGAGAAGGTAAAGATA 57.690 37.037 0.00 0.00 0.00 1.98
845 848 8.798975 ATAGATGGTGGAGAAGGTAAAGATAA 57.201 34.615 0.00 0.00 0.00 1.75
846 849 7.698163 AGATGGTGGAGAAGGTAAAGATAAT 57.302 36.000 0.00 0.00 0.00 1.28
847 850 7.740805 AGATGGTGGAGAAGGTAAAGATAATC 58.259 38.462 0.00 0.00 0.00 1.75
848 851 6.248569 TGGTGGAGAAGGTAAAGATAATCC 57.751 41.667 0.00 0.00 0.00 3.01
849 852 5.163343 TGGTGGAGAAGGTAAAGATAATCCG 60.163 44.000 0.00 0.00 0.00 4.18
850 853 5.298347 GTGGAGAAGGTAAAGATAATCCGG 58.702 45.833 0.00 0.00 0.00 5.14
851 854 4.202326 TGGAGAAGGTAAAGATAATCCGGC 60.202 45.833 0.00 0.00 0.00 6.13
852 855 4.202326 GGAGAAGGTAAAGATAATCCGGCA 60.202 45.833 0.00 0.00 0.00 5.69
853 856 5.365619 GAGAAGGTAAAGATAATCCGGCAA 58.634 41.667 0.00 0.00 0.00 4.52
854 857 5.368989 AGAAGGTAAAGATAATCCGGCAAG 58.631 41.667 0.00 0.00 0.00 4.01
855 858 5.130477 AGAAGGTAAAGATAATCCGGCAAGA 59.870 40.000 0.00 0.00 0.00 3.02
856 859 5.367945 AGGTAAAGATAATCCGGCAAGAA 57.632 39.130 0.00 0.00 0.00 2.52
857 860 5.751586 AGGTAAAGATAATCCGGCAAGAAA 58.248 37.500 0.00 0.00 0.00 2.52
858 861 6.184789 AGGTAAAGATAATCCGGCAAGAAAA 58.815 36.000 0.00 0.00 0.00 2.29
859 862 6.095021 AGGTAAAGATAATCCGGCAAGAAAAC 59.905 38.462 0.00 0.00 0.00 2.43
860 863 4.983671 AAGATAATCCGGCAAGAAAACC 57.016 40.909 0.00 0.00 0.00 3.27
861 864 4.236527 AGATAATCCGGCAAGAAAACCT 57.763 40.909 0.00 0.00 0.00 3.50
862 865 4.600062 AGATAATCCGGCAAGAAAACCTT 58.400 39.130 0.00 0.00 34.91 3.50
863 866 5.751586 AGATAATCCGGCAAGAAAACCTTA 58.248 37.500 0.00 0.00 32.86 2.69
864 867 5.823045 AGATAATCCGGCAAGAAAACCTTAG 59.177 40.000 0.00 0.00 32.86 2.18
865 868 3.713826 ATCCGGCAAGAAAACCTTAGA 57.286 42.857 0.00 0.00 32.86 2.10
866 869 3.713826 TCCGGCAAGAAAACCTTAGAT 57.286 42.857 0.00 0.00 32.86 1.98
867 870 4.028993 TCCGGCAAGAAAACCTTAGATT 57.971 40.909 0.00 0.00 32.86 2.40
868 871 4.007659 TCCGGCAAGAAAACCTTAGATTC 58.992 43.478 0.00 0.00 32.86 2.52
869 872 3.128764 CCGGCAAGAAAACCTTAGATTCC 59.871 47.826 0.00 0.00 32.86 3.01
870 873 3.181510 CGGCAAGAAAACCTTAGATTCCG 60.182 47.826 0.00 0.00 32.86 4.30
871 874 3.427638 GGCAAGAAAACCTTAGATTCCGC 60.428 47.826 0.00 0.00 32.86 5.54
872 875 3.427638 GCAAGAAAACCTTAGATTCCGCC 60.428 47.826 0.00 0.00 32.86 6.13
873 876 2.629051 AGAAAACCTTAGATTCCGCCG 58.371 47.619 0.00 0.00 0.00 6.46
874 877 1.063616 GAAAACCTTAGATTCCGCCGC 59.936 52.381 0.00 0.00 0.00 6.53
875 878 0.746923 AAACCTTAGATTCCGCCGCC 60.747 55.000 0.00 0.00 0.00 6.13
876 879 2.661866 CCTTAGATTCCGCCGCCG 60.662 66.667 0.00 0.00 0.00 6.46
877 880 3.338676 CTTAGATTCCGCCGCCGC 61.339 66.667 0.00 0.00 0.00 6.53
878 881 4.903010 TTAGATTCCGCCGCCGCC 62.903 66.667 0.00 0.00 0.00 6.13
906 909 3.512516 GCTGCCTGCGGAATCCAC 61.513 66.667 1.25 0.00 0.00 4.02
907 910 2.270205 CTGCCTGCGGAATCCACT 59.730 61.111 0.00 0.00 0.00 4.00
908 911 1.817099 CTGCCTGCGGAATCCACTC 60.817 63.158 0.00 0.00 0.00 3.51
909 912 2.249413 CTGCCTGCGGAATCCACTCT 62.249 60.000 0.00 0.00 0.00 3.24
910 913 1.078143 GCCTGCGGAATCCACTCTT 60.078 57.895 0.00 0.00 0.00 2.85
911 914 1.092345 GCCTGCGGAATCCACTCTTC 61.092 60.000 0.00 0.00 0.00 2.87
912 915 0.462759 CCTGCGGAATCCACTCTTCC 60.463 60.000 0.00 0.00 39.06 3.46
913 916 0.462759 CTGCGGAATCCACTCTTCCC 60.463 60.000 0.00 0.00 39.22 3.97
914 917 1.153147 GCGGAATCCACTCTTCCCC 60.153 63.158 0.00 0.00 39.22 4.81
915 918 1.144057 CGGAATCCACTCTTCCCCG 59.856 63.158 0.00 0.00 39.22 5.73
916 919 1.614241 CGGAATCCACTCTTCCCCGT 61.614 60.000 0.00 0.00 39.22 5.28
917 920 0.618981 GGAATCCACTCTTCCCCGTT 59.381 55.000 0.00 0.00 36.89 4.44
918 921 1.004394 GGAATCCACTCTTCCCCGTTT 59.996 52.381 0.00 0.00 36.89 3.60
919 922 2.084546 GAATCCACTCTTCCCCGTTTG 58.915 52.381 0.00 0.00 0.00 2.93
920 923 1.064825 ATCCACTCTTCCCCGTTTGT 58.935 50.000 0.00 0.00 0.00 2.83
921 924 0.395312 TCCACTCTTCCCCGTTTGTC 59.605 55.000 0.00 0.00 0.00 3.18
922 925 0.396811 CCACTCTTCCCCGTTTGTCT 59.603 55.000 0.00 0.00 0.00 3.41
923 926 1.608283 CCACTCTTCCCCGTTTGTCTC 60.608 57.143 0.00 0.00 0.00 3.36
924 927 0.317479 ACTCTTCCCCGTTTGTCTCG 59.683 55.000 0.00 0.00 0.00 4.04
925 928 0.317479 CTCTTCCCCGTTTGTCTCGT 59.683 55.000 0.00 0.00 0.00 4.18
926 929 1.542915 CTCTTCCCCGTTTGTCTCGTA 59.457 52.381 0.00 0.00 0.00 3.43
927 930 2.165845 CTCTTCCCCGTTTGTCTCGTAT 59.834 50.000 0.00 0.00 0.00 3.06
928 931 3.355378 TCTTCCCCGTTTGTCTCGTATA 58.645 45.455 0.00 0.00 0.00 1.47
929 932 3.956199 TCTTCCCCGTTTGTCTCGTATAT 59.044 43.478 0.00 0.00 0.00 0.86
930 933 4.403432 TCTTCCCCGTTTGTCTCGTATATT 59.597 41.667 0.00 0.00 0.00 1.28
931 934 4.049546 TCCCCGTTTGTCTCGTATATTG 57.950 45.455 0.00 0.00 0.00 1.90
932 935 2.542595 CCCCGTTTGTCTCGTATATTGC 59.457 50.000 0.00 0.00 0.00 3.56
940 943 7.464358 GTTTGTCTCGTATATTGCAATGAAGT 58.536 34.615 22.27 7.78 0.00 3.01
989 992 2.205022 AAGTATGGCAGAAGCAGCAA 57.795 45.000 0.00 0.00 44.61 3.91
991 994 0.453390 GTATGGCAGAAGCAGCAACC 59.547 55.000 0.00 0.00 44.61 3.77
1146 1152 1.287730 GGATGGAGATCATGTCGCGC 61.288 60.000 0.00 0.00 35.97 6.86
1232 1244 2.126228 CTACGAACGAGGCGGCAA 60.126 61.111 13.08 0.00 0.00 4.52
1286 1300 0.305922 GGTCGCTGCTTCATACATGC 59.694 55.000 0.00 0.00 0.00 4.06
1287 1301 1.293924 GTCGCTGCTTCATACATGCT 58.706 50.000 0.00 0.00 0.00 3.79
1294 1308 4.514441 GCTGCTTCATACATGCTATTGACT 59.486 41.667 0.00 0.00 0.00 3.41
1319 1333 0.846427 TCCTCCCAGCCAGTTCCATT 60.846 55.000 0.00 0.00 0.00 3.16
1326 1340 2.025887 CCAGCCAGTTCCATTCCTAAGT 60.026 50.000 0.00 0.00 0.00 2.24
1363 1377 0.110104 CCCCATCTGCTTCTCCATCC 59.890 60.000 0.00 0.00 0.00 3.51
1393 1408 4.060667 CCCCCAACCCCGAGCAAT 62.061 66.667 0.00 0.00 0.00 3.56
1420 1435 2.223044 GCCTTGTACGTTATGAAGCAGC 60.223 50.000 0.00 0.00 0.00 5.25
1609 1627 5.392380 CCAATTTTTCTTGTCTCATCTCCCG 60.392 44.000 0.00 0.00 0.00 5.14
1701 1719 0.109723 TGCCCTTCTTTAACCGTGCT 59.890 50.000 0.00 0.00 0.00 4.40
1820 1841 1.508632 GCTCCGTCTTTGCTGTACAA 58.491 50.000 0.00 0.00 36.13 2.41
2152 2185 5.820947 TGTAACTGTCTGTTCTTTCCCTTTC 59.179 40.000 0.00 0.00 39.89 2.62
2182 2215 7.060421 TGTCTGTTCTTTCCCTTTTCATTACT 58.940 34.615 0.00 0.00 0.00 2.24
2183 2216 8.215050 TGTCTGTTCTTTCCCTTTTCATTACTA 58.785 33.333 0.00 0.00 0.00 1.82
2184 2217 9.232473 GTCTGTTCTTTCCCTTTTCATTACTAT 57.768 33.333 0.00 0.00 0.00 2.12
2185 2218 9.807921 TCTGTTCTTTCCCTTTTCATTACTATT 57.192 29.630 0.00 0.00 0.00 1.73
2227 2260 3.669023 GCAGCAGCAGTGAAAGTAACATC 60.669 47.826 0.00 0.00 41.58 3.06
2248 2281 4.566004 TCGCTGTAACTTATGCTCAGTTT 58.434 39.130 1.81 0.00 35.95 2.66
2284 2317 6.839124 ATGTCATTCCATTTACTTCTTGCA 57.161 33.333 0.00 0.00 0.00 4.08
2304 2337 5.123227 TGCAGCTTACTATTGGTAATCACC 58.877 41.667 0.00 0.00 46.00 4.02
2337 2370 5.609423 AGCTGCTTCCACTAGATGAATAAG 58.391 41.667 0.00 1.17 0.00 1.73
2366 2399 4.164258 AGCACTGCTTGGTTCACC 57.836 55.556 0.00 0.00 33.89 4.02
2405 2438 3.279434 CCTGGTAAAATACAGACCTGGC 58.721 50.000 3.62 0.00 43.01 4.85
2413 2446 1.616159 TACAGACCTGGCAAAAAGGC 58.384 50.000 0.00 0.00 38.48 4.35
2519 2554 7.453393 CAGAAATATTATGCACCTTAGGAGGA 58.547 38.462 4.77 0.00 46.74 3.71
2520 2555 7.939039 CAGAAATATTATGCACCTTAGGAGGAA 59.061 37.037 4.77 0.00 46.74 3.36
2521 2556 8.673251 AGAAATATTATGCACCTTAGGAGGAAT 58.327 33.333 4.77 0.00 46.74 3.01
2597 2632 1.687494 GCTCGACCGCTGTCATTGTC 61.687 60.000 9.06 0.00 41.85 3.18
2598 2633 0.388520 CTCGACCGCTGTCATTGTCA 60.389 55.000 9.06 0.00 41.85 3.58
2637 2672 0.526662 GGTGATCAGAGACGGACGTT 59.473 55.000 0.00 0.00 0.00 3.99
2644 2679 2.227388 TCAGAGACGGACGTTAGGTTTC 59.773 50.000 0.00 0.00 0.00 2.78
2669 2704 2.356667 GCCCACTTCCTTCCCCAG 59.643 66.667 0.00 0.00 0.00 4.45
2873 2908 4.202264 CGATGTCCCTCTGGTTAATTAGCT 60.202 45.833 0.00 0.00 0.00 3.32
2882 2917 7.084486 CCTCTGGTTAATTAGCTTTTCAACAC 58.916 38.462 0.00 0.00 0.00 3.32
3030 3068 6.640518 TGAGTTGGTAGGATGATTTGAGTAC 58.359 40.000 0.00 0.00 0.00 2.73
3058 3096 2.823154 CAACCCAATGTACGGATGGTTT 59.177 45.455 9.66 0.80 34.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 0.380378 TTCTGCACAACGGTTTGAGC 59.620 50.000 0.00 0.00 46.27 4.26
46 49 3.249917 CAACTTTTCTGCACAACGGTTT 58.750 40.909 0.00 0.00 0.00 3.27
71 74 2.434331 CCGCCTTTGACTTGGGGA 59.566 61.111 0.00 0.00 38.38 4.81
83 86 2.424842 TTTGCTTCCCATCACCGCCT 62.425 55.000 0.00 0.00 0.00 5.52
86 89 4.097741 TCATTATTTTGCTTCCCATCACCG 59.902 41.667 0.00 0.00 0.00 4.94
89 92 4.099881 GCCTCATTATTTTGCTTCCCATCA 59.900 41.667 0.00 0.00 0.00 3.07
141 144 0.955905 TTGTAGCAAAAACCTCGGCC 59.044 50.000 0.00 0.00 0.00 6.13
145 148 3.821841 CGATGGTTGTAGCAAAAACCTC 58.178 45.455 13.53 8.77 45.12 3.85
187 190 5.533482 GTGATAGATGTAGCAAATCCGTCT 58.467 41.667 0.00 0.00 0.00 4.18
193 196 3.059884 CGCCGTGATAGATGTAGCAAAT 58.940 45.455 0.00 0.00 0.00 2.32
210 213 2.126618 TACGTCACAGCTTCGCCG 60.127 61.111 0.00 0.00 0.00 6.46
214 217 1.892468 CCGTAGTACGTCACAGCTTC 58.108 55.000 20.60 0.00 40.58 3.86
215 218 0.109412 GCCGTAGTACGTCACAGCTT 60.109 55.000 20.60 0.00 40.58 3.74
221 224 2.689785 CCACCGCCGTAGTACGTCA 61.690 63.158 20.60 0.00 40.58 4.35
247 250 1.284982 CTCGAGGACGGTTGCAACAG 61.285 60.000 29.55 27.39 40.21 3.16
249 252 0.878961 AACTCGAGGACGGTTGCAAC 60.879 55.000 21.59 21.59 40.21 4.17
258 261 2.355444 GGTAGTAGCAGAACTCGAGGAC 59.645 54.545 18.41 10.09 0.00 3.85
265 268 1.202582 CACGCTGGTAGTAGCAGAACT 59.797 52.381 29.05 10.08 45.98 3.01
266 269 1.630148 CACGCTGGTAGTAGCAGAAC 58.370 55.000 29.05 13.69 45.98 3.01
269 272 1.141881 CCCACGCTGGTAGTAGCAG 59.858 63.158 22.36 22.36 45.86 4.24
277 280 0.037590 TAGCAAAATCCCACGCTGGT 59.962 50.000 0.00 0.00 35.17 4.00
280 283 0.321298 ACGTAGCAAAATCCCACGCT 60.321 50.000 0.00 0.00 36.11 5.07
282 285 0.725117 GGACGTAGCAAAATCCCACG 59.275 55.000 0.00 0.00 38.52 4.94
303 306 0.615331 GCTCAAGACTCCACCATGGA 59.385 55.000 21.47 0.00 45.98 3.41
304 307 0.325933 TGCTCAAGACTCCACCATGG 59.674 55.000 11.19 11.19 39.43 3.66
305 308 1.735386 CTGCTCAAGACTCCACCATG 58.265 55.000 0.00 0.00 0.00 3.66
306 309 0.035630 GCTGCTCAAGACTCCACCAT 60.036 55.000 0.00 0.00 0.00 3.55
307 310 1.372683 GCTGCTCAAGACTCCACCA 59.627 57.895 0.00 0.00 0.00 4.17
308 311 1.739562 CGCTGCTCAAGACTCCACC 60.740 63.158 0.00 0.00 0.00 4.61
309 312 1.011451 GTCGCTGCTCAAGACTCCAC 61.011 60.000 0.00 0.00 32.58 4.02
310 313 1.290324 GTCGCTGCTCAAGACTCCA 59.710 57.895 0.00 0.00 32.58 3.86
311 314 1.803519 CGTCGCTGCTCAAGACTCC 60.804 63.158 0.00 0.00 33.10 3.85
312 315 1.803519 CCGTCGCTGCTCAAGACTC 60.804 63.158 0.00 0.00 33.10 3.36
313 316 2.259818 CCGTCGCTGCTCAAGACT 59.740 61.111 0.00 0.00 33.10 3.24
314 317 3.482783 GCCGTCGCTGCTCAAGAC 61.483 66.667 0.00 0.00 0.00 3.01
331 334 2.872925 AATTCGTCGTCGTCGCCG 60.873 61.111 7.01 0.00 39.77 6.46
332 335 2.687436 CAATTCGTCGTCGTCGCC 59.313 61.111 7.01 0.00 38.33 5.54
333 336 2.018270 GCAATTCGTCGTCGTCGC 59.982 61.111 7.01 0.00 38.33 5.19
334 337 1.337150 CAGCAATTCGTCGTCGTCG 59.663 57.895 5.50 5.50 38.33 5.12
335 338 1.057361 GCAGCAATTCGTCGTCGTC 59.943 57.895 1.33 0.00 38.33 4.20
336 339 1.218875 TTGCAGCAATTCGTCGTCGT 61.219 50.000 2.83 0.00 38.33 4.34
337 340 0.785708 GTTGCAGCAATTCGTCGTCG 60.786 55.000 11.96 0.00 38.55 5.12
338 341 0.452784 GGTTGCAGCAATTCGTCGTC 60.453 55.000 11.96 0.00 0.00 4.20
339 342 1.163420 TGGTTGCAGCAATTCGTCGT 61.163 50.000 11.96 0.00 0.00 4.34
340 343 0.168788 ATGGTTGCAGCAATTCGTCG 59.831 50.000 11.96 0.00 0.00 5.12
341 344 1.470098 AGATGGTTGCAGCAATTCGTC 59.530 47.619 11.96 16.25 0.00 4.20
342 345 1.538047 AGATGGTTGCAGCAATTCGT 58.462 45.000 11.96 8.39 0.00 3.85
343 346 2.642139 AAGATGGTTGCAGCAATTCG 57.358 45.000 11.96 0.00 0.00 3.34
344 347 2.919229 CGAAAGATGGTTGCAGCAATTC 59.081 45.455 11.96 8.82 0.00 2.17
345 348 2.297033 ACGAAAGATGGTTGCAGCAATT 59.703 40.909 11.96 0.00 0.00 2.32
346 349 1.888512 ACGAAAGATGGTTGCAGCAAT 59.111 42.857 11.96 0.00 0.00 3.56
347 350 1.317613 ACGAAAGATGGTTGCAGCAA 58.682 45.000 2.83 2.83 0.00 3.91
348 351 1.317613 AACGAAAGATGGTTGCAGCA 58.682 45.000 2.05 0.00 0.00 4.41
349 352 2.422276 AAACGAAAGATGGTTGCAGC 57.578 45.000 0.00 0.00 0.00 5.25
350 353 3.060339 GCAAAAACGAAAGATGGTTGCAG 60.060 43.478 0.00 0.00 37.73 4.41
351 354 2.863137 GCAAAAACGAAAGATGGTTGCA 59.137 40.909 0.00 0.00 37.73 4.08
352 355 3.123050 AGCAAAAACGAAAGATGGTTGC 58.877 40.909 0.00 0.00 37.91 4.17
353 356 4.378616 CGTAGCAAAAACGAAAGATGGTTG 59.621 41.667 0.00 0.00 42.90 3.77
354 357 4.273969 TCGTAGCAAAAACGAAAGATGGTT 59.726 37.500 0.00 0.00 45.62 3.67
355 358 3.810941 TCGTAGCAAAAACGAAAGATGGT 59.189 39.130 0.00 0.00 45.62 3.55
356 359 4.398549 TCGTAGCAAAAACGAAAGATGG 57.601 40.909 0.00 0.00 45.62 3.51
363 366 1.559149 GCCGGTCGTAGCAAAAACGA 61.559 55.000 1.90 0.00 46.35 3.85
364 367 1.154543 GCCGGTCGTAGCAAAAACG 60.155 57.895 1.90 0.00 41.64 3.60
365 368 0.385098 GTGCCGGTCGTAGCAAAAAC 60.385 55.000 1.90 0.00 41.48 2.43
366 369 1.508808 GGTGCCGGTCGTAGCAAAAA 61.509 55.000 1.90 0.00 41.48 1.94
367 370 1.962306 GGTGCCGGTCGTAGCAAAA 60.962 57.895 1.90 0.00 41.48 2.44
368 371 2.357760 GGTGCCGGTCGTAGCAAA 60.358 61.111 1.90 0.00 41.48 3.68
369 372 4.728102 CGGTGCCGGTCGTAGCAA 62.728 66.667 1.90 0.00 41.48 3.91
381 384 3.443045 CCATGGCAACTCCGGTGC 61.443 66.667 6.98 6.98 37.80 5.01
382 385 3.443045 GCCATGGCAACTCCGGTG 61.443 66.667 32.08 0.00 41.49 4.94
383 386 4.740822 GGCCATGGCAACTCCGGT 62.741 66.667 36.56 0.00 44.11 5.28
385 388 2.658679 TATCGGCCATGGCAACTCCG 62.659 60.000 36.56 28.58 44.11 4.63
386 389 0.465460 TTATCGGCCATGGCAACTCC 60.465 55.000 36.56 18.67 44.11 3.85
387 390 0.947244 CTTATCGGCCATGGCAACTC 59.053 55.000 36.56 19.05 44.11 3.01
388 391 1.103398 GCTTATCGGCCATGGCAACT 61.103 55.000 36.56 21.89 44.11 3.16
389 392 1.360192 GCTTATCGGCCATGGCAAC 59.640 57.895 36.56 20.17 44.11 4.17
390 393 2.186160 CGCTTATCGGCCATGGCAA 61.186 57.895 36.56 24.64 44.11 4.52
391 394 2.591429 CGCTTATCGGCCATGGCA 60.591 61.111 36.56 19.35 44.11 4.92
392 395 2.591715 ACGCTTATCGGCCATGGC 60.592 61.111 29.47 29.47 43.86 4.40
393 396 2.253758 CCACGCTTATCGGCCATGG 61.254 63.158 7.63 7.63 43.86 3.66
394 397 2.253758 CCCACGCTTATCGGCCATG 61.254 63.158 2.24 0.00 43.86 3.66
395 398 2.111043 CCCACGCTTATCGGCCAT 59.889 61.111 2.24 0.00 43.86 4.40
396 399 4.849310 GCCCACGCTTATCGGCCA 62.849 66.667 2.24 0.00 43.86 5.36
399 402 4.524318 ACCGCCCACGCTTATCGG 62.524 66.667 0.00 0.00 45.04 4.18
400 403 2.960129 GACCGCCCACGCTTATCG 60.960 66.667 0.00 0.00 45.38 2.92
401 404 1.429148 CTTGACCGCCCACGCTTATC 61.429 60.000 0.00 0.00 38.22 1.75
402 405 1.449601 CTTGACCGCCCACGCTTAT 60.450 57.895 0.00 0.00 38.22 1.73
403 406 2.047655 CTTGACCGCCCACGCTTA 60.048 61.111 0.00 0.00 38.22 3.09
406 409 4.778143 ATCCTTGACCGCCCACGC 62.778 66.667 0.00 0.00 38.22 5.34
407 410 2.819595 CATCCTTGACCGCCCACG 60.820 66.667 0.00 0.00 39.67 4.94
408 411 3.134127 GCATCCTTGACCGCCCAC 61.134 66.667 0.00 0.00 0.00 4.61
409 412 4.776322 CGCATCCTTGACCGCCCA 62.776 66.667 0.00 0.00 0.00 5.36
410 413 4.467084 TCGCATCCTTGACCGCCC 62.467 66.667 0.00 0.00 0.00 6.13
411 414 3.195698 GTCGCATCCTTGACCGCC 61.196 66.667 0.00 0.00 0.00 6.13
412 415 2.434185 TGTCGCATCCTTGACCGC 60.434 61.111 0.00 0.00 34.18 5.68
413 416 2.100631 GGTGTCGCATCCTTGACCG 61.101 63.158 0.00 0.00 34.18 4.79
414 417 2.100631 CGGTGTCGCATCCTTGACC 61.101 63.158 0.00 0.00 34.18 4.02
415 418 1.078759 CTCGGTGTCGCATCCTTGAC 61.079 60.000 0.00 0.00 36.13 3.18
416 419 1.215382 CTCGGTGTCGCATCCTTGA 59.785 57.895 0.00 0.00 36.13 3.02
417 420 2.456119 GCTCGGTGTCGCATCCTTG 61.456 63.158 0.00 0.00 36.13 3.61
418 421 2.125512 GCTCGGTGTCGCATCCTT 60.126 61.111 0.00 0.00 36.13 3.36
419 422 3.381983 TGCTCGGTGTCGCATCCT 61.382 61.111 0.00 0.00 36.13 3.24
420 423 3.188786 GTGCTCGGTGTCGCATCC 61.189 66.667 0.00 0.00 38.56 3.51
421 424 3.545481 CGTGCTCGGTGTCGCATC 61.545 66.667 0.00 0.00 38.56 3.91
431 434 4.803426 GGTCCTCTGCCGTGCTCG 62.803 72.222 0.14 0.14 0.00 5.03
432 435 4.803426 CGGTCCTCTGCCGTGCTC 62.803 72.222 0.00 0.00 43.84 4.26
440 443 4.180946 CTCGACGGCGGTCCTCTG 62.181 72.222 12.58 4.95 40.17 3.35
443 446 4.816984 ATCCTCGACGGCGGTCCT 62.817 66.667 12.58 0.00 40.17 3.85
444 447 4.570663 CATCCTCGACGGCGGTCC 62.571 72.222 12.58 0.00 40.17 4.46
445 448 4.570663 CCATCCTCGACGGCGGTC 62.571 72.222 12.58 14.05 39.89 4.79
449 452 4.222847 GTCCCCATCCTCGACGGC 62.223 72.222 0.00 0.00 0.00 5.68
450 453 3.537874 GGTCCCCATCCTCGACGG 61.538 72.222 0.00 0.00 0.00 4.79
451 454 3.900892 CGGTCCCCATCCTCGACG 61.901 72.222 0.00 0.00 0.00 5.12
452 455 3.537874 CCGGTCCCCATCCTCGAC 61.538 72.222 0.00 0.00 0.00 4.20
463 466 4.570663 CATCCTCGTCGCCGGTCC 62.571 72.222 1.90 0.00 33.95 4.46
464 467 4.570663 CCATCCTCGTCGCCGGTC 62.571 72.222 1.90 0.00 33.95 4.79
470 473 4.873129 CGGTGGCCATCCTCGTCG 62.873 72.222 9.72 0.95 0.00 5.12
471 474 4.530857 CCGGTGGCCATCCTCGTC 62.531 72.222 9.72 0.00 0.00 4.20
473 476 4.227134 CTCCGGTGGCCATCCTCG 62.227 72.222 9.72 11.18 0.00 4.63
474 477 3.866582 CCTCCGGTGGCCATCCTC 61.867 72.222 9.72 0.00 0.00 3.71
482 485 4.075793 TCCTCTCCCCTCCGGTGG 62.076 72.222 15.94 15.94 0.00 4.61
483 486 2.443016 CTCCTCTCCCCTCCGGTG 60.443 72.222 0.00 0.00 0.00 4.94
484 487 3.756783 CCTCCTCTCCCCTCCGGT 61.757 72.222 0.00 0.00 0.00 5.28
485 488 3.756783 ACCTCCTCTCCCCTCCGG 61.757 72.222 0.00 0.00 0.00 5.14
486 489 2.443016 CACCTCCTCTCCCCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
487 490 2.766229 GCACCTCCTCTCCCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
488 491 2.039624 TGCACCTCCTCTCCCCTC 59.960 66.667 0.00 0.00 0.00 4.30
489 492 2.284995 GTGCACCTCCTCTCCCCT 60.285 66.667 5.22 0.00 0.00 4.79
490 493 2.607750 TGTGCACCTCCTCTCCCC 60.608 66.667 15.69 0.00 0.00 4.81
491 494 2.665603 GTGTGCACCTCCTCTCCC 59.334 66.667 15.69 0.00 0.00 4.30
501 504 3.414700 CTTCCGCTCGGTGTGCAC 61.415 66.667 10.75 10.75 36.47 4.57
502 505 2.942796 ATCTTCCGCTCGGTGTGCA 61.943 57.895 8.28 0.00 36.47 4.57
503 506 2.125512 ATCTTCCGCTCGGTGTGC 60.126 61.111 8.28 0.00 36.47 4.57
504 507 2.456119 GCATCTTCCGCTCGGTGTG 61.456 63.158 8.28 4.81 36.47 3.82
505 508 2.125512 GCATCTTCCGCTCGGTGT 60.126 61.111 8.28 0.00 36.47 4.16
506 509 2.960957 ATCGCATCTTCCGCTCGGTG 62.961 60.000 8.28 0.44 36.47 4.94
507 510 2.298158 AATCGCATCTTCCGCTCGGT 62.298 55.000 8.28 0.00 36.47 4.69
508 511 1.552348 GAATCGCATCTTCCGCTCGG 61.552 60.000 1.14 1.14 0.00 4.63
509 512 1.552348 GGAATCGCATCTTCCGCTCG 61.552 60.000 0.00 0.00 33.34 5.03
510 513 0.530650 TGGAATCGCATCTTCCGCTC 60.531 55.000 4.92 0.00 44.29 5.03
511 514 0.531532 CTGGAATCGCATCTTCCGCT 60.532 55.000 4.92 0.00 44.29 5.52
512 515 1.937391 CTGGAATCGCATCTTCCGC 59.063 57.895 4.92 0.00 44.29 5.54
513 516 1.825285 CGCTGGAATCGCATCTTCCG 61.825 60.000 4.92 2.21 44.29 4.30
514 517 0.530650 TCGCTGGAATCGCATCTTCC 60.531 55.000 2.72 2.72 42.15 3.46
515 518 0.857935 CTCGCTGGAATCGCATCTTC 59.142 55.000 0.00 0.00 0.00 2.87
516 519 0.461548 TCTCGCTGGAATCGCATCTT 59.538 50.000 0.00 0.00 0.00 2.40
517 520 0.031857 CTCTCGCTGGAATCGCATCT 59.968 55.000 0.00 0.00 0.00 2.90
518 521 0.943359 CCTCTCGCTGGAATCGCATC 60.943 60.000 0.00 0.00 0.00 3.91
519 522 1.068753 CCTCTCGCTGGAATCGCAT 59.931 57.895 0.00 0.00 0.00 4.73
520 523 1.604147 TTCCTCTCGCTGGAATCGCA 61.604 55.000 0.00 0.00 38.53 5.10
521 524 0.873743 CTTCCTCTCGCTGGAATCGC 60.874 60.000 0.00 0.00 42.03 4.58
522 525 0.741326 TCTTCCTCTCGCTGGAATCG 59.259 55.000 0.00 0.00 42.03 3.34
523 526 2.167487 ACTTCTTCCTCTCGCTGGAATC 59.833 50.000 0.00 0.00 42.03 2.52
524 527 2.183679 ACTTCTTCCTCTCGCTGGAAT 58.816 47.619 0.00 0.00 42.03 3.01
525 528 1.633774 ACTTCTTCCTCTCGCTGGAA 58.366 50.000 0.00 0.00 40.85 3.53
526 529 1.273606 CAACTTCTTCCTCTCGCTGGA 59.726 52.381 0.00 0.00 0.00 3.86
527 530 1.001406 ACAACTTCTTCCTCTCGCTGG 59.999 52.381 0.00 0.00 0.00 4.85
528 531 2.064762 CACAACTTCTTCCTCTCGCTG 58.935 52.381 0.00 0.00 0.00 5.18
529 532 1.001406 CCACAACTTCTTCCTCTCGCT 59.999 52.381 0.00 0.00 0.00 4.93
530 533 1.433534 CCACAACTTCTTCCTCTCGC 58.566 55.000 0.00 0.00 0.00 5.03
531 534 1.338200 CCCCACAACTTCTTCCTCTCG 60.338 57.143 0.00 0.00 0.00 4.04
532 535 1.611936 GCCCCACAACTTCTTCCTCTC 60.612 57.143 0.00 0.00 0.00 3.20
533 536 0.402121 GCCCCACAACTTCTTCCTCT 59.598 55.000 0.00 0.00 0.00 3.69
534 537 0.110486 TGCCCCACAACTTCTTCCTC 59.890 55.000 0.00 0.00 0.00 3.71
535 538 0.555769 TTGCCCCACAACTTCTTCCT 59.444 50.000 0.00 0.00 31.73 3.36
536 539 1.068588 GTTTGCCCCACAACTTCTTCC 59.931 52.381 0.00 0.00 38.23 3.46
537 540 1.068588 GGTTTGCCCCACAACTTCTTC 59.931 52.381 0.00 0.00 38.23 2.87
538 541 1.119684 GGTTTGCCCCACAACTTCTT 58.880 50.000 0.00 0.00 38.23 2.52
539 542 1.106944 CGGTTTGCCCCACAACTTCT 61.107 55.000 0.00 0.00 38.23 2.85
540 543 1.362355 CGGTTTGCCCCACAACTTC 59.638 57.895 0.00 0.00 38.23 3.01
541 544 0.973496 AACGGTTTGCCCCACAACTT 60.973 50.000 0.00 0.00 38.23 2.66
542 545 0.973496 AAACGGTTTGCCCCACAACT 60.973 50.000 5.12 0.00 38.23 3.16
543 546 0.108089 AAAACGGTTTGCCCCACAAC 60.108 50.000 6.92 0.00 38.23 3.32
544 547 0.613777 AAAAACGGTTTGCCCCACAA 59.386 45.000 6.92 0.00 36.13 3.33
545 548 1.481871 TAAAAACGGTTTGCCCCACA 58.518 45.000 6.92 0.00 0.00 4.17
546 549 2.823924 ATAAAAACGGTTTGCCCCAC 57.176 45.000 6.92 0.00 0.00 4.61
547 550 3.840124 AAATAAAAACGGTTTGCCCCA 57.160 38.095 6.92 0.00 0.00 4.96
548 551 3.184783 CGAAAATAAAAACGGTTTGCCCC 59.815 43.478 6.92 0.00 0.00 5.80
549 552 3.363182 GCGAAAATAAAAACGGTTTGCCC 60.363 43.478 6.92 0.00 0.00 5.36
550 553 3.363182 GGCGAAAATAAAAACGGTTTGCC 60.363 43.478 6.92 8.97 0.00 4.52
551 554 3.659620 CGGCGAAAATAAAAACGGTTTGC 60.660 43.478 6.92 3.52 0.00 3.68
552 555 3.121295 CCGGCGAAAATAAAAACGGTTTG 60.121 43.478 9.30 0.00 35.47 2.93
553 556 3.051327 CCGGCGAAAATAAAAACGGTTT 58.949 40.909 9.30 0.00 35.47 3.27
554 557 2.292845 TCCGGCGAAAATAAAAACGGTT 59.707 40.909 9.30 0.00 40.60 4.44
555 558 1.878734 TCCGGCGAAAATAAAAACGGT 59.121 42.857 9.30 0.00 40.60 4.83
556 559 2.615489 TCCGGCGAAAATAAAAACGG 57.385 45.000 9.30 0.00 41.06 4.44
557 560 3.103007 GGATCCGGCGAAAATAAAAACG 58.897 45.455 9.30 0.00 0.00 3.60
558 561 4.099380 TGGATCCGGCGAAAATAAAAAC 57.901 40.909 9.30 0.00 0.00 2.43
559 562 4.785511 TTGGATCCGGCGAAAATAAAAA 57.214 36.364 9.30 0.00 0.00 1.94
560 563 4.440802 CCATTGGATCCGGCGAAAATAAAA 60.441 41.667 9.30 0.00 0.00 1.52
561 564 3.067461 CCATTGGATCCGGCGAAAATAAA 59.933 43.478 9.30 0.00 0.00 1.40
562 565 2.621055 CCATTGGATCCGGCGAAAATAA 59.379 45.455 9.30 0.00 0.00 1.40
563 566 2.226330 CCATTGGATCCGGCGAAAATA 58.774 47.619 9.30 0.00 0.00 1.40
564 567 1.032014 CCATTGGATCCGGCGAAAAT 58.968 50.000 9.30 0.00 0.00 1.82
565 568 1.662438 GCCATTGGATCCGGCGAAAA 61.662 55.000 9.30 0.00 35.79 2.29
566 569 2.118404 GCCATTGGATCCGGCGAAA 61.118 57.895 9.30 0.00 35.79 3.46
567 570 2.515991 GCCATTGGATCCGGCGAA 60.516 61.111 9.30 0.00 35.79 4.70
570 573 4.521292 TGGGCCATTGGATCCGGC 62.521 66.667 18.23 18.23 45.47 6.13
571 574 2.519302 GTGGGCCATTGGATCCGG 60.519 66.667 10.70 3.30 0.00 5.14
572 575 2.901840 CGTGGGCCATTGGATCCG 60.902 66.667 10.70 2.04 0.00 4.18
573 576 3.219198 GCGTGGGCCATTGGATCC 61.219 66.667 10.70 4.20 0.00 3.36
574 577 3.585990 CGCGTGGGCCATTGGATC 61.586 66.667 10.70 0.00 35.02 3.36
575 578 4.108299 TCGCGTGGGCCATTGGAT 62.108 61.111 10.70 0.00 35.02 3.41
578 581 3.499737 GAGTCGCGTGGGCCATTG 61.500 66.667 10.70 6.98 35.02 2.82
579 582 3.545124 TTGAGTCGCGTGGGCCATT 62.545 57.895 10.70 0.00 35.02 3.16
580 583 2.819984 ATTTGAGTCGCGTGGGCCAT 62.820 55.000 10.70 0.00 35.02 4.40
581 584 3.545124 ATTTGAGTCGCGTGGGCCA 62.545 57.895 0.00 0.00 35.02 5.36
582 585 2.746277 ATTTGAGTCGCGTGGGCC 60.746 61.111 5.77 0.00 35.02 5.80
583 586 2.750888 GGATTTGAGTCGCGTGGGC 61.751 63.158 5.77 0.00 0.00 5.36
584 587 0.953471 TTGGATTTGAGTCGCGTGGG 60.953 55.000 5.77 0.00 0.00 4.61
585 588 0.165944 GTTGGATTTGAGTCGCGTGG 59.834 55.000 5.77 0.00 0.00 4.94
586 589 0.179250 CGTTGGATTTGAGTCGCGTG 60.179 55.000 5.77 0.00 0.00 5.34
587 590 1.289109 CCGTTGGATTTGAGTCGCGT 61.289 55.000 5.77 0.00 0.00 6.01
588 591 1.419922 CCGTTGGATTTGAGTCGCG 59.580 57.895 0.00 0.00 0.00 5.87
589 592 1.134694 GCCGTTGGATTTGAGTCGC 59.865 57.895 0.00 0.00 0.00 5.19
590 593 0.721718 GAGCCGTTGGATTTGAGTCG 59.278 55.000 0.00 0.00 0.00 4.18
591 594 1.087501 GGAGCCGTTGGATTTGAGTC 58.912 55.000 0.00 0.00 0.00 3.36
592 595 0.673644 CGGAGCCGTTGGATTTGAGT 60.674 55.000 0.00 0.00 34.35 3.41
593 596 0.391130 TCGGAGCCGTTGGATTTGAG 60.391 55.000 8.96 0.00 40.74 3.02
594 597 0.672401 GTCGGAGCCGTTGGATTTGA 60.672 55.000 8.96 0.00 40.74 2.69
595 598 0.953471 TGTCGGAGCCGTTGGATTTG 60.953 55.000 8.96 0.00 40.74 2.32
596 599 0.035439 ATGTCGGAGCCGTTGGATTT 60.035 50.000 8.96 0.00 40.74 2.17
597 600 0.744414 CATGTCGGAGCCGTTGGATT 60.744 55.000 8.96 0.00 40.74 3.01
598 601 1.153369 CATGTCGGAGCCGTTGGAT 60.153 57.895 8.96 0.00 40.74 3.41
599 602 1.613317 ATCATGTCGGAGCCGTTGGA 61.613 55.000 8.96 3.70 40.74 3.53
600 603 1.153369 ATCATGTCGGAGCCGTTGG 60.153 57.895 8.96 0.00 40.74 3.77
601 604 1.482621 CGATCATGTCGGAGCCGTTG 61.483 60.000 8.96 5.97 46.47 4.10
602 605 1.226974 CGATCATGTCGGAGCCGTT 60.227 57.895 8.96 0.00 46.47 4.44
603 606 2.413351 CGATCATGTCGGAGCCGT 59.587 61.111 8.96 0.00 46.47 5.68
611 614 2.237751 CCGTTCGGCCGATCATGTC 61.238 63.158 31.56 13.78 0.00 3.06
612 615 2.202878 CCGTTCGGCCGATCATGT 60.203 61.111 31.56 0.00 0.00 3.21
613 616 1.813753 AACCGTTCGGCCGATCATG 60.814 57.895 31.56 22.51 0.00 3.07
614 617 1.813753 CAACCGTTCGGCCGATCAT 60.814 57.895 31.56 16.10 0.00 2.45
615 618 2.433491 CAACCGTTCGGCCGATCA 60.433 61.111 31.56 13.09 0.00 2.92
616 619 3.192922 CCAACCGTTCGGCCGATC 61.193 66.667 31.56 26.99 0.00 3.69
617 620 4.770874 CCCAACCGTTCGGCCGAT 62.771 66.667 31.56 11.71 0.00 4.18
639 642 2.969238 CTAATCTGCGCCGGCCTG 60.969 66.667 23.46 17.22 38.85 4.85
640 643 3.470888 ACTAATCTGCGCCGGCCT 61.471 61.111 23.46 0.61 38.85 5.19
641 644 3.272334 CACTAATCTGCGCCGGCC 61.272 66.667 23.46 14.70 38.85 6.13
642 645 3.941836 GCACTAATCTGCGCCGGC 61.942 66.667 19.07 19.07 40.52 6.13
643 646 3.272334 GGCACTAATCTGCGCCGG 61.272 66.667 4.18 0.00 38.12 6.13
644 647 3.272334 GGGCACTAATCTGCGCCG 61.272 66.667 4.18 0.00 45.85 6.46
645 648 1.312371 TTTGGGCACTAATCTGCGCC 61.312 55.000 4.18 0.00 46.77 6.53
647 650 1.737838 TCTTTGGGCACTAATCTGCG 58.262 50.000 0.00 0.00 38.12 5.18
648 651 4.519540 TTTTCTTTGGGCACTAATCTGC 57.480 40.909 0.00 0.00 36.33 4.26
649 652 5.230182 GGTTTTTCTTTGGGCACTAATCTG 58.770 41.667 0.00 0.00 0.00 2.90
650 653 4.022329 CGGTTTTTCTTTGGGCACTAATCT 60.022 41.667 0.00 0.00 0.00 2.40
651 654 4.234574 CGGTTTTTCTTTGGGCACTAATC 58.765 43.478 0.00 0.00 0.00 1.75
652 655 3.639561 ACGGTTTTTCTTTGGGCACTAAT 59.360 39.130 0.00 0.00 0.00 1.73
653 656 3.025262 ACGGTTTTTCTTTGGGCACTAA 58.975 40.909 0.00 0.00 0.00 2.24
654 657 2.657143 ACGGTTTTTCTTTGGGCACTA 58.343 42.857 0.00 0.00 0.00 2.74
655 658 1.480789 ACGGTTTTTCTTTGGGCACT 58.519 45.000 0.00 0.00 0.00 4.40
656 659 3.067040 TCTTACGGTTTTTCTTTGGGCAC 59.933 43.478 0.00 0.00 0.00 5.01
657 660 3.288964 TCTTACGGTTTTTCTTTGGGCA 58.711 40.909 0.00 0.00 0.00 5.36
658 661 3.994204 TCTTACGGTTTTTCTTTGGGC 57.006 42.857 0.00 0.00 0.00 5.36
659 662 4.736307 CGTTTCTTACGGTTTTTCTTTGGG 59.264 41.667 0.00 0.00 46.42 4.12
660 663 5.859824 CGTTTCTTACGGTTTTTCTTTGG 57.140 39.130 0.00 0.00 46.42 3.28
672 675 7.418034 AACACAGGTTTCAGCGTTTCTTACG 62.418 44.000 0.00 0.00 43.31 3.18
673 676 3.311596 ACACAGGTTTCAGCGTTTCTTAC 59.688 43.478 0.00 0.00 0.00 2.34
674 677 3.537580 ACACAGGTTTCAGCGTTTCTTA 58.462 40.909 0.00 0.00 0.00 2.10
675 678 2.365582 ACACAGGTTTCAGCGTTTCTT 58.634 42.857 0.00 0.00 0.00 2.52
676 679 2.038387 ACACAGGTTTCAGCGTTTCT 57.962 45.000 0.00 0.00 0.00 2.52
677 680 2.844122 AACACAGGTTTCAGCGTTTC 57.156 45.000 0.00 0.00 31.83 2.78
678 681 3.586100 AAAACACAGGTTTCAGCGTTT 57.414 38.095 0.00 0.00 46.20 3.60
679 682 3.586100 AAAAACACAGGTTTCAGCGTT 57.414 38.095 0.00 0.00 46.20 4.84
704 707 2.863132 TTAGCCGGCCACTCTAAAAA 57.137 45.000 26.15 0.62 0.00 1.94
705 708 2.303600 TCTTTAGCCGGCCACTCTAAAA 59.696 45.455 26.15 11.20 33.50 1.52
706 709 1.903860 TCTTTAGCCGGCCACTCTAAA 59.096 47.619 26.15 19.14 33.05 1.85
707 710 1.206371 GTCTTTAGCCGGCCACTCTAA 59.794 52.381 26.15 12.27 0.00 2.10
708 711 0.822164 GTCTTTAGCCGGCCACTCTA 59.178 55.000 26.15 5.33 0.00 2.43
709 712 1.597461 GTCTTTAGCCGGCCACTCT 59.403 57.895 26.15 6.59 0.00 3.24
710 713 1.810030 CGTCTTTAGCCGGCCACTC 60.810 63.158 26.15 8.35 0.00 3.51
711 714 2.264794 CGTCTTTAGCCGGCCACT 59.735 61.111 26.15 7.52 0.00 4.00
712 715 2.047560 ACGTCTTTAGCCGGCCAC 60.048 61.111 26.15 11.35 0.00 5.01
713 716 2.047655 CACGTCTTTAGCCGGCCA 60.048 61.111 26.15 6.66 0.00 5.36
714 717 3.497031 GCACGTCTTTAGCCGGCC 61.497 66.667 26.15 5.24 0.00 6.13
715 718 3.849953 CGCACGTCTTTAGCCGGC 61.850 66.667 21.89 21.89 0.00 6.13
716 719 3.849953 GCGCACGTCTTTAGCCGG 61.850 66.667 0.30 0.00 0.00 6.13
717 720 3.849953 GGCGCACGTCTTTAGCCG 61.850 66.667 10.83 0.00 38.28 5.52
719 722 1.348594 GATGGCGCACGTCTTTAGC 59.651 57.895 10.83 0.00 32.17 3.09
720 723 0.739462 TGGATGGCGCACGTCTTTAG 60.739 55.000 10.83 0.00 35.38 1.85
721 724 1.017177 GTGGATGGCGCACGTCTTTA 61.017 55.000 10.83 0.00 35.38 1.85
722 725 2.031919 TGGATGGCGCACGTCTTT 59.968 55.556 10.83 0.00 35.38 2.52
723 726 2.742372 GTGGATGGCGCACGTCTT 60.742 61.111 10.83 0.00 35.38 3.01
724 727 4.002506 TGTGGATGGCGCACGTCT 62.003 61.111 10.83 0.00 35.38 4.18
725 728 3.788766 GTGTGGATGGCGCACGTC 61.789 66.667 10.83 9.65 0.00 4.34
726 729 4.314440 AGTGTGGATGGCGCACGT 62.314 61.111 10.83 0.00 38.10 4.49
727 730 3.792047 CAGTGTGGATGGCGCACG 61.792 66.667 10.83 0.00 38.10 5.34
728 731 1.375396 TACAGTGTGGATGGCGCAC 60.375 57.895 10.83 0.00 0.00 5.34
729 732 1.375396 GTACAGTGTGGATGGCGCA 60.375 57.895 10.83 0.00 0.00 6.09
730 733 0.174845 TAGTACAGTGTGGATGGCGC 59.825 55.000 5.88 0.00 0.00 6.53
731 734 2.473816 CATAGTACAGTGTGGATGGCG 58.526 52.381 5.88 0.00 0.00 5.69
732 735 2.838736 CCATAGTACAGTGTGGATGGC 58.161 52.381 15.78 0.00 33.53 4.40
733 736 2.485479 GGCCATAGTACAGTGTGGATGG 60.485 54.545 20.53 20.53 37.49 3.51
734 737 2.485479 GGGCCATAGTACAGTGTGGATG 60.485 54.545 4.39 6.48 33.53 3.51
735 738 1.768870 GGGCCATAGTACAGTGTGGAT 59.231 52.381 4.39 0.00 33.53 3.41
736 739 1.200519 GGGCCATAGTACAGTGTGGA 58.799 55.000 4.39 0.00 33.53 4.02
737 740 0.908910 TGGGCCATAGTACAGTGTGG 59.091 55.000 0.00 0.00 34.84 4.17
738 741 1.743772 GCTGGGCCATAGTACAGTGTG 60.744 57.143 6.72 0.00 33.62 3.82
739 742 0.541863 GCTGGGCCATAGTACAGTGT 59.458 55.000 6.72 0.00 33.62 3.55
740 743 3.386543 GCTGGGCCATAGTACAGTG 57.613 57.895 6.72 0.00 33.62 3.66
754 757 2.512986 TAAACCCATGGGCTGGCTGG 62.513 60.000 31.73 4.61 44.46 4.85
755 758 0.397535 ATAAACCCATGGGCTGGCTG 60.398 55.000 31.73 5.44 44.46 4.85
756 759 0.106015 GATAAACCCATGGGCTGGCT 60.106 55.000 31.73 11.96 44.46 4.75
757 760 1.115326 GGATAAACCCATGGGCTGGC 61.115 60.000 31.73 15.92 44.46 4.85
758 761 0.261402 TGGATAAACCCATGGGCTGG 59.739 55.000 31.73 7.51 45.51 4.85
759 762 1.696063 CTGGATAAACCCATGGGCTG 58.304 55.000 31.73 13.03 39.32 4.85
760 763 0.106015 GCTGGATAAACCCATGGGCT 60.106 55.000 31.73 17.32 39.32 5.19
761 764 0.396974 TGCTGGATAAACCCATGGGC 60.397 55.000 31.73 13.89 39.32 5.36
762 765 1.696063 CTGCTGGATAAACCCATGGG 58.304 55.000 30.23 30.23 42.03 4.00
763 766 1.696063 CCTGCTGGATAAACCCATGG 58.304 55.000 4.14 4.14 38.00 3.66
764 767 1.035139 GCCTGCTGGATAAACCCATG 58.965 55.000 14.77 0.00 38.00 3.66
765 768 0.466189 CGCCTGCTGGATAAACCCAT 60.466 55.000 14.77 0.00 38.00 4.00
766 769 1.077787 CGCCTGCTGGATAAACCCA 60.078 57.895 14.77 0.00 38.00 4.51
767 770 0.179018 ATCGCCTGCTGGATAAACCC 60.179 55.000 14.77 0.00 38.00 4.11
768 771 1.230324 GATCGCCTGCTGGATAAACC 58.770 55.000 14.77 0.00 39.54 3.27
769 772 1.230324 GGATCGCCTGCTGGATAAAC 58.770 55.000 14.77 0.21 34.57 2.01
770 773 0.249868 CGGATCGCCTGCTGGATAAA 60.250 55.000 14.77 0.00 34.57 1.40
771 774 1.367471 CGGATCGCCTGCTGGATAA 59.633 57.895 14.77 0.00 34.57 1.75
772 775 0.538746 TACGGATCGCCTGCTGGATA 60.539 55.000 14.77 0.00 34.57 2.59
773 776 1.188219 ATACGGATCGCCTGCTGGAT 61.188 55.000 14.77 0.00 34.57 3.41
774 777 0.538746 TATACGGATCGCCTGCTGGA 60.539 55.000 14.77 0.00 34.57 3.86
775 778 0.109086 CTATACGGATCGCCTGCTGG 60.109 60.000 5.03 5.03 0.00 4.85
776 779 0.881796 TCTATACGGATCGCCTGCTG 59.118 55.000 0.00 0.00 0.00 4.41
777 780 1.840737 ATCTATACGGATCGCCTGCT 58.159 50.000 0.00 0.00 0.00 4.24
778 781 2.263077 CAATCTATACGGATCGCCTGC 58.737 52.381 0.00 0.00 0.00 4.85
779 782 3.577649 ACAATCTATACGGATCGCCTG 57.422 47.619 0.00 0.00 0.00 4.85
780 783 4.602340 AAACAATCTATACGGATCGCCT 57.398 40.909 0.00 0.00 0.00 5.52
781 784 5.668558 AAAAACAATCTATACGGATCGCC 57.331 39.130 0.00 0.00 0.00 5.54
801 804 9.098355 CCATCTATACAGATCGAAGTTTCAAAA 57.902 33.333 0.00 0.00 39.62 2.44
802 805 8.258007 ACCATCTATACAGATCGAAGTTTCAAA 58.742 33.333 0.00 0.00 39.62 2.69
803 806 7.706607 CACCATCTATACAGATCGAAGTTTCAA 59.293 37.037 0.00 0.00 39.62 2.69
804 807 7.203218 CACCATCTATACAGATCGAAGTTTCA 58.797 38.462 0.00 0.00 39.62 2.69
805 808 6.642950 CCACCATCTATACAGATCGAAGTTTC 59.357 42.308 0.00 0.00 39.62 2.78
806 809 6.323996 TCCACCATCTATACAGATCGAAGTTT 59.676 38.462 0.00 0.00 39.62 2.66
807 810 5.833667 TCCACCATCTATACAGATCGAAGTT 59.166 40.000 0.00 0.00 39.62 2.66
808 811 5.386060 TCCACCATCTATACAGATCGAAGT 58.614 41.667 0.00 0.00 39.62 3.01
809 812 5.707764 TCTCCACCATCTATACAGATCGAAG 59.292 44.000 0.00 0.00 39.62 3.79
810 813 5.631119 TCTCCACCATCTATACAGATCGAA 58.369 41.667 0.00 0.00 39.62 3.71
811 814 5.242795 TCTCCACCATCTATACAGATCGA 57.757 43.478 0.00 0.00 39.62 3.59
812 815 5.105957 CCTTCTCCACCATCTATACAGATCG 60.106 48.000 0.00 0.00 39.62 3.69
813 816 5.777732 ACCTTCTCCACCATCTATACAGATC 59.222 44.000 0.00 0.00 39.62 2.75
814 817 5.721225 ACCTTCTCCACCATCTATACAGAT 58.279 41.667 0.00 0.00 42.52 2.90
815 818 5.144159 ACCTTCTCCACCATCTATACAGA 57.856 43.478 0.00 0.00 34.56 3.41
816 819 6.978674 TTACCTTCTCCACCATCTATACAG 57.021 41.667 0.00 0.00 0.00 2.74
817 820 7.130099 TCTTTACCTTCTCCACCATCTATACA 58.870 38.462 0.00 0.00 0.00 2.29
818 821 7.598759 TCTTTACCTTCTCCACCATCTATAC 57.401 40.000 0.00 0.00 0.00 1.47
819 822 9.892444 TTATCTTTACCTTCTCCACCATCTATA 57.108 33.333 0.00 0.00 0.00 1.31
820 823 8.798975 TTATCTTTACCTTCTCCACCATCTAT 57.201 34.615 0.00 0.00 0.00 1.98
821 824 8.798975 ATTATCTTTACCTTCTCCACCATCTA 57.201 34.615 0.00 0.00 0.00 1.98
822 825 7.202139 GGATTATCTTTACCTTCTCCACCATCT 60.202 40.741 0.00 0.00 0.00 2.90
823 826 6.937465 GGATTATCTTTACCTTCTCCACCATC 59.063 42.308 0.00 0.00 0.00 3.51
824 827 6.464465 CGGATTATCTTTACCTTCTCCACCAT 60.464 42.308 0.00 0.00 0.00 3.55
825 828 5.163343 CGGATTATCTTTACCTTCTCCACCA 60.163 44.000 0.00 0.00 0.00 4.17
826 829 5.298347 CGGATTATCTTTACCTTCTCCACC 58.702 45.833 0.00 0.00 0.00 4.61
827 830 5.298347 CCGGATTATCTTTACCTTCTCCAC 58.702 45.833 0.00 0.00 0.00 4.02
828 831 4.202326 GCCGGATTATCTTTACCTTCTCCA 60.202 45.833 5.05 0.00 0.00 3.86
829 832 4.202326 TGCCGGATTATCTTTACCTTCTCC 60.202 45.833 5.05 0.00 0.00 3.71
830 833 4.957296 TGCCGGATTATCTTTACCTTCTC 58.043 43.478 5.05 0.00 0.00 2.87
831 834 5.130477 TCTTGCCGGATTATCTTTACCTTCT 59.870 40.000 5.05 0.00 0.00 2.85
832 835 5.365619 TCTTGCCGGATTATCTTTACCTTC 58.634 41.667 5.05 0.00 0.00 3.46
833 836 5.367945 TCTTGCCGGATTATCTTTACCTT 57.632 39.130 5.05 0.00 0.00 3.50
834 837 5.367945 TTCTTGCCGGATTATCTTTACCT 57.632 39.130 5.05 0.00 0.00 3.08
835 838 6.263344 GTTTTCTTGCCGGATTATCTTTACC 58.737 40.000 5.05 0.00 0.00 2.85
836 839 6.095021 AGGTTTTCTTGCCGGATTATCTTTAC 59.905 38.462 5.05 0.00 0.00 2.01
837 840 6.184789 AGGTTTTCTTGCCGGATTATCTTTA 58.815 36.000 5.05 0.00 0.00 1.85
838 841 5.016831 AGGTTTTCTTGCCGGATTATCTTT 58.983 37.500 5.05 0.00 0.00 2.52
839 842 4.600062 AGGTTTTCTTGCCGGATTATCTT 58.400 39.130 5.05 0.00 0.00 2.40
840 843 4.236527 AGGTTTTCTTGCCGGATTATCT 57.763 40.909 5.05 0.00 0.00 1.98
841 844 4.983671 AAGGTTTTCTTGCCGGATTATC 57.016 40.909 5.05 0.00 33.76 1.75
842 845 5.751586 TCTAAGGTTTTCTTGCCGGATTAT 58.248 37.500 5.05 0.00 36.93 1.28
843 846 5.168647 TCTAAGGTTTTCTTGCCGGATTA 57.831 39.130 5.05 0.00 36.93 1.75
844 847 4.028993 TCTAAGGTTTTCTTGCCGGATT 57.971 40.909 5.05 0.00 36.93 3.01
845 848 3.713826 TCTAAGGTTTTCTTGCCGGAT 57.286 42.857 5.05 0.00 36.93 4.18
846 849 3.713826 ATCTAAGGTTTTCTTGCCGGA 57.286 42.857 5.05 0.00 36.93 5.14
847 850 3.128764 GGAATCTAAGGTTTTCTTGCCGG 59.871 47.826 0.00 0.00 36.93 6.13
848 851 3.181510 CGGAATCTAAGGTTTTCTTGCCG 60.182 47.826 0.00 0.00 36.93 5.69
849 852 3.427638 GCGGAATCTAAGGTTTTCTTGCC 60.428 47.826 0.00 0.00 36.93 4.52
850 853 3.427638 GGCGGAATCTAAGGTTTTCTTGC 60.428 47.826 0.00 0.00 36.93 4.01
851 854 3.181510 CGGCGGAATCTAAGGTTTTCTTG 60.182 47.826 0.00 0.00 36.93 3.02
852 855 3.007635 CGGCGGAATCTAAGGTTTTCTT 58.992 45.455 0.00 0.00 39.40 2.52
853 856 2.629051 CGGCGGAATCTAAGGTTTTCT 58.371 47.619 0.00 0.00 0.00 2.52
854 857 1.063616 GCGGCGGAATCTAAGGTTTTC 59.936 52.381 9.78 0.00 0.00 2.29
855 858 1.092348 GCGGCGGAATCTAAGGTTTT 58.908 50.000 9.78 0.00 0.00 2.43
856 859 0.746923 GGCGGCGGAATCTAAGGTTT 60.747 55.000 9.78 0.00 0.00 3.27
857 860 1.153229 GGCGGCGGAATCTAAGGTT 60.153 57.895 9.78 0.00 0.00 3.50
858 861 2.504519 GGCGGCGGAATCTAAGGT 59.495 61.111 9.78 0.00 0.00 3.50
859 862 2.661866 CGGCGGCGGAATCTAAGG 60.662 66.667 25.36 0.00 0.00 2.69
860 863 3.338676 GCGGCGGCGGAATCTAAG 61.339 66.667 33.02 1.48 0.00 2.18
861 864 4.903010 GGCGGCGGCGGAATCTAA 62.903 66.667 33.02 0.00 41.24 2.10
894 897 0.462759 GGGAAGAGTGGATTCCGCAG 60.463 60.000 18.18 0.00 46.05 5.18
895 898 1.602237 GGGAAGAGTGGATTCCGCA 59.398 57.895 18.18 0.00 46.05 5.69
896 899 4.542075 GGGAAGAGTGGATTCCGC 57.458 61.111 8.26 8.26 46.05 5.54
897 900 1.144057 CGGGGAAGAGTGGATTCCG 59.856 63.158 0.00 0.00 46.05 4.30
898 901 0.618981 AACGGGGAAGAGTGGATTCC 59.381 55.000 0.00 0.00 44.65 3.01
899 902 2.084546 CAAACGGGGAAGAGTGGATTC 58.915 52.381 0.00 0.00 0.00 2.52
900 903 1.423921 ACAAACGGGGAAGAGTGGATT 59.576 47.619 0.00 0.00 0.00 3.01
901 904 1.003233 GACAAACGGGGAAGAGTGGAT 59.997 52.381 0.00 0.00 0.00 3.41
902 905 0.395312 GACAAACGGGGAAGAGTGGA 59.605 55.000 0.00 0.00 0.00 4.02
903 906 0.396811 AGACAAACGGGGAAGAGTGG 59.603 55.000 0.00 0.00 0.00 4.00
904 907 1.797025 GAGACAAACGGGGAAGAGTG 58.203 55.000 0.00 0.00 0.00 3.51
905 908 0.317479 CGAGACAAACGGGGAAGAGT 59.683 55.000 0.00 0.00 0.00 3.24
906 909 0.317479 ACGAGACAAACGGGGAAGAG 59.683 55.000 0.00 0.00 34.93 2.85
907 910 1.619654 TACGAGACAAACGGGGAAGA 58.380 50.000 0.00 0.00 34.93 2.87
908 911 2.667473 ATACGAGACAAACGGGGAAG 57.333 50.000 0.00 0.00 34.93 3.46
909 912 4.435425 CAATATACGAGACAAACGGGGAA 58.565 43.478 0.00 0.00 34.93 3.97
910 913 3.738899 GCAATATACGAGACAAACGGGGA 60.739 47.826 0.00 0.00 34.93 4.81
911 914 2.542595 GCAATATACGAGACAAACGGGG 59.457 50.000 0.00 0.00 34.93 5.73
912 915 3.191669 TGCAATATACGAGACAAACGGG 58.808 45.455 0.00 0.00 34.93 5.28
913 916 4.850859 TTGCAATATACGAGACAAACGG 57.149 40.909 0.00 0.00 34.93 4.44
914 917 6.031549 TCATTGCAATATACGAGACAAACG 57.968 37.500 12.53 0.00 0.00 3.60
915 918 7.464358 ACTTCATTGCAATATACGAGACAAAC 58.536 34.615 12.53 0.00 0.00 2.93
916 919 7.609760 ACTTCATTGCAATATACGAGACAAA 57.390 32.000 12.53 0.00 0.00 2.83
917 920 7.463544 CAACTTCATTGCAATATACGAGACAA 58.536 34.615 12.53 0.00 0.00 3.18
918 921 7.003939 CAACTTCATTGCAATATACGAGACA 57.996 36.000 12.53 0.00 0.00 3.41
932 935 1.650153 CGAATTGCCGCAACTTCATTG 59.350 47.619 8.25 0.00 41.69 2.82
940 943 0.595588 ACATTCACGAATTGCCGCAA 59.404 45.000 8.55 8.55 0.00 4.85
1053 1056 2.734723 GACGTTGCTGCTGCTCGA 60.735 61.111 27.85 10.48 40.48 4.04
1232 1244 0.461961 GAGGATCTTGCTAGCACCGT 59.538 55.000 19.17 5.71 0.00 4.83
1286 1300 0.676736 GGAGGAGCCGGAGTCAATAG 59.323 60.000 5.05 0.00 0.00 1.73
1287 1301 0.759436 GGGAGGAGCCGGAGTCAATA 60.759 60.000 5.05 0.00 37.63 1.90
1319 1333 4.687262 TCCTCCTTGGAACTACTTAGGA 57.313 45.455 0.00 0.00 42.94 2.94
1381 1395 0.749454 GCATCAGATTGCTCGGGGTT 60.749 55.000 0.00 0.00 39.57 4.11
1393 1408 4.729227 TCATAACGTACAAGGCATCAGA 57.271 40.909 0.00 0.00 0.00 3.27
1820 1841 1.745141 GCAGATCGAGGTCTTGCCAAT 60.745 52.381 0.00 0.00 40.61 3.16
2182 2215 9.832445 CTGCTGGAACCTCTAAATAAGTAAATA 57.168 33.333 0.00 0.00 0.00 1.40
2183 2216 7.283354 GCTGCTGGAACCTCTAAATAAGTAAAT 59.717 37.037 0.00 0.00 0.00 1.40
2184 2217 6.598064 GCTGCTGGAACCTCTAAATAAGTAAA 59.402 38.462 0.00 0.00 0.00 2.01
2185 2218 6.113411 GCTGCTGGAACCTCTAAATAAGTAA 58.887 40.000 0.00 0.00 0.00 2.24
2186 2219 5.188948 TGCTGCTGGAACCTCTAAATAAGTA 59.811 40.000 0.00 0.00 0.00 2.24
2187 2220 4.019321 TGCTGCTGGAACCTCTAAATAAGT 60.019 41.667 0.00 0.00 0.00 2.24
2188 2221 4.517285 TGCTGCTGGAACCTCTAAATAAG 58.483 43.478 0.00 0.00 0.00 1.73
2189 2222 4.517285 CTGCTGCTGGAACCTCTAAATAA 58.483 43.478 0.00 0.00 0.00 1.40
2227 2260 4.627467 AGAAACTGAGCATAAGTTACAGCG 59.373 41.667 0.00 0.00 32.67 5.18
2304 2337 7.268586 TCTAGTGGAAGCAGCTAAGAAAATAG 58.731 38.462 0.00 0.00 0.00 1.73
2366 2399 1.986882 GGGTATTCAGCCCCAATCTG 58.013 55.000 0.00 0.00 40.88 2.90
2405 2438 6.073602 GCTTTTACAAAGATGAGGCCTTTTTG 60.074 38.462 21.49 21.49 32.04 2.44
2413 2446 6.458210 ACCAAATGCTTTTACAAAGATGAGG 58.542 36.000 0.25 0.00 0.00 3.86
2416 2449 6.566376 GCCAACCAAATGCTTTTACAAAGATG 60.566 38.462 0.25 0.00 0.00 2.90
2505 2540 1.965414 TGGATTCCTCCTAAGGTGCA 58.035 50.000 3.95 0.00 43.82 4.57
2521 2556 9.184523 TGTTTCTCTTCTTCAAACTTTAATGGA 57.815 29.630 0.00 0.00 32.28 3.41
2637 2672 2.349755 GGCCGCAGTGGAAACCTA 59.650 61.111 3.39 0.00 42.00 3.08
2669 2704 2.053277 GTCCCCGGAGAGTGGAGAC 61.053 68.421 0.73 0.00 0.00 3.36
2882 2917 1.021202 TCACAAGAGGCAAACAACCG 58.979 50.000 0.00 0.00 0.00 4.44
3030 3068 4.571919 TCCGTACATTGGGTTGAGTTAAG 58.428 43.478 0.00 0.00 0.00 1.85
3038 3076 2.823154 CAAACCATCCGTACATTGGGTT 59.177 45.455 9.72 6.86 41.07 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.