Multiple sequence alignment - TraesCS2A01G520400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G520400 chr2A 100.000 2813 0 0 1 2813 743115562 743112750 0.000000e+00 5195
1 TraesCS2A01G520400 chr2A 95.977 174 5 2 2469 2640 639969100 639969273 5.930000e-72 281
2 TraesCS2A01G520400 chr2A 92.179 179 14 0 2635 2813 577155814 577155992 1.290000e-63 254
3 TraesCS2A01G520400 chr2B 92.005 1776 82 30 724 2472 745724711 745722969 0.000000e+00 2438
4 TraesCS2A01G520400 chr2B 90.571 700 65 1 2 700 463348133 463347434 0.000000e+00 926
5 TraesCS2A01G520400 chr2B 89.557 699 73 0 2 700 62791272 62791970 0.000000e+00 887
6 TraesCS2A01G520400 chr2B 89.020 255 23 5 2221 2472 745723520 745723268 7.570000e-81 311
7 TraesCS2A01G520400 chr2B 95.789 190 8 0 2472 2661 666485086 666484897 9.790000e-80 307
8 TraesCS2A01G520400 chr2B 97.126 174 5 0 2640 2813 211622385 211622212 7.620000e-76 294
9 TraesCS2A01G520400 chr2B 95.480 177 7 1 2465 2640 700210331 700210507 5.930000e-72 281
10 TraesCS2A01G520400 chr2B 94.857 175 9 0 2639 2813 146779071 146779245 9.930000e-70 274
11 TraesCS2A01G520400 chr2B 85.603 257 27 7 1939 2189 745723224 745722972 7.730000e-66 261
12 TraesCS2A01G520400 chr2D 91.671 1777 64 25 734 2472 610298099 610296369 0.000000e+00 2385
13 TraesCS2A01G520400 chr2D 89.922 129 9 3 2221 2347 610296890 610296764 2.240000e-36 163
14 TraesCS2A01G520400 chr6A 96.576 701 23 1 1 700 576225808 576226508 0.000000e+00 1160
15 TraesCS2A01G520400 chr6A 75.912 822 165 17 1001 1813 125541462 125542259 9.450000e-105 390
16 TraesCS2A01G520400 chr5A 94.571 700 37 1 2 700 687959660 687958961 0.000000e+00 1081
17 TraesCS2A01G520400 chr5A 95.402 174 6 2 2469 2640 646990211 646990038 2.760000e-70 276
18 TraesCS2A01G520400 chr5A 92.135 178 14 0 2636 2813 493960477 493960654 4.650000e-63 252
19 TraesCS2A01G520400 chr1B 93.010 701 47 1 2 702 560023551 560024249 0.000000e+00 1022
20 TraesCS2A01G520400 chr1B 88.920 704 77 1 2 704 296767635 296768338 0.000000e+00 867
21 TraesCS2A01G520400 chr5B 90.987 699 63 0 2 700 410831950 410832648 0.000000e+00 942
22 TraesCS2A01G520400 chr6B 90.272 699 68 0 2 700 289515594 289516292 0.000000e+00 915
23 TraesCS2A01G520400 chr6B 76.344 744 146 17 1001 1738 189277024 189277743 3.420000e-99 372
24 TraesCS2A01G520400 chr6B 89.130 184 16 4 2461 2640 43743728 43743911 2.820000e-55 226
25 TraesCS2A01G520400 chr7B 89.286 700 73 2 2 700 1047539 1046841 0.000000e+00 876
26 TraesCS2A01G520400 chr6D 75.850 824 164 20 1001 1814 104146301 104147099 1.220000e-103 387
27 TraesCS2A01G520400 chr1A 97.059 170 4 1 2472 2640 572331697 572331528 4.590000e-73 285
28 TraesCS2A01G520400 chr7A 97.576 165 4 0 2472 2636 619588628 619588792 1.650000e-72 283
29 TraesCS2A01G520400 chr7A 93.296 179 12 0 2635 2813 515273327 515273505 5.970000e-67 265
30 TraesCS2A01G520400 chr7A 92.737 179 12 1 2636 2813 626898509 626898331 1.000000e-64 257
31 TraesCS2A01G520400 chr3A 95.506 178 5 3 2464 2640 518488430 518488605 5.930000e-72 281
32 TraesCS2A01G520400 chr3A 92.614 176 13 0 2638 2813 458138387 458138212 1.290000e-63 254
33 TraesCS2A01G520400 chr4A 94.944 178 7 2 2465 2640 47646368 47646545 7.670000e-71 278
34 TraesCS2A01G520400 chr4A 95.882 170 6 1 2472 2640 219188145 219187976 9.930000e-70 274
35 TraesCS2A01G520400 chr3D 93.478 184 12 0 2630 2813 32904990 32905173 9.930000e-70 274
36 TraesCS2A01G520400 chr3B 94.828 174 9 0 2640 2813 335167488 335167315 3.570000e-69 272
37 TraesCS2A01G520400 chr1D 86.264 182 21 4 2461 2640 241259462 241259283 7.950000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G520400 chr2A 743112750 743115562 2812 True 5195.000000 5195 100.0000 1 2813 1 chr2A.!!$R1 2812
1 TraesCS2A01G520400 chr2B 745722969 745724711 1742 True 1003.333333 2438 88.8760 724 2472 3 chr2B.!!$R4 1748
2 TraesCS2A01G520400 chr2B 463347434 463348133 699 True 926.000000 926 90.5710 2 700 1 chr2B.!!$R2 698
3 TraesCS2A01G520400 chr2B 62791272 62791970 698 False 887.000000 887 89.5570 2 700 1 chr2B.!!$F1 698
4 TraesCS2A01G520400 chr2D 610296369 610298099 1730 True 1274.000000 2385 90.7965 734 2472 2 chr2D.!!$R1 1738
5 TraesCS2A01G520400 chr6A 576225808 576226508 700 False 1160.000000 1160 96.5760 1 700 1 chr6A.!!$F2 699
6 TraesCS2A01G520400 chr6A 125541462 125542259 797 False 390.000000 390 75.9120 1001 1813 1 chr6A.!!$F1 812
7 TraesCS2A01G520400 chr5A 687958961 687959660 699 True 1081.000000 1081 94.5710 2 700 1 chr5A.!!$R2 698
8 TraesCS2A01G520400 chr1B 560023551 560024249 698 False 1022.000000 1022 93.0100 2 702 1 chr1B.!!$F2 700
9 TraesCS2A01G520400 chr1B 296767635 296768338 703 False 867.000000 867 88.9200 2 704 1 chr1B.!!$F1 702
10 TraesCS2A01G520400 chr5B 410831950 410832648 698 False 942.000000 942 90.9870 2 700 1 chr5B.!!$F1 698
11 TraesCS2A01G520400 chr6B 289515594 289516292 698 False 915.000000 915 90.2720 2 700 1 chr6B.!!$F3 698
12 TraesCS2A01G520400 chr6B 189277024 189277743 719 False 372.000000 372 76.3440 1001 1738 1 chr6B.!!$F2 737
13 TraesCS2A01G520400 chr7B 1046841 1047539 698 True 876.000000 876 89.2860 2 700 1 chr7B.!!$R1 698
14 TraesCS2A01G520400 chr6D 104146301 104147099 798 False 387.000000 387 75.8500 1001 1814 1 chr6D.!!$F1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 727 0.02877 CACGCGGCTTTGTCTCAAAA 59.971 50.0 12.47 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2690 2742 0.109342 GGACATGCCATTCCGATCCT 59.891 55.0 0.0 0.0 36.34 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.179108 ATGGAAGGCGAGACGTAAGC 60.179 55.000 0.00 0.00 45.62 3.09
96 97 2.526304 TTGAAAGTCCAGACTCCACG 57.474 50.000 0.00 0.00 41.58 4.94
161 162 0.612744 GAGACAGGAAGCAAGCCTCT 59.387 55.000 0.00 0.00 32.12 3.69
189 190 1.305201 GACAAAGCAGACCGAACCAA 58.695 50.000 0.00 0.00 0.00 3.67
237 238 0.319900 AGTTCAATGTCGACGCTGCT 60.320 50.000 11.62 1.39 0.00 4.24
465 466 6.071320 AGATGATATTAAGCAAAGGAACCCC 58.929 40.000 0.00 0.00 0.00 4.95
615 616 4.740431 GTGGGCCGCCATGTTTGC 62.740 66.667 12.58 0.00 0.00 3.68
658 659 8.089625 TCTCTCTTTTGTACCCATGAATATCA 57.910 34.615 0.00 0.00 0.00 2.15
722 723 4.090057 GGCACGCGGCTTTGTCTC 62.090 66.667 12.47 0.00 44.01 3.36
723 724 3.345808 GCACGCGGCTTTGTCTCA 61.346 61.111 12.47 0.00 40.25 3.27
724 725 2.892334 GCACGCGGCTTTGTCTCAA 61.892 57.895 12.47 0.00 40.25 3.02
725 726 1.646540 CACGCGGCTTTGTCTCAAA 59.353 52.632 12.47 0.00 0.00 2.69
726 727 0.028770 CACGCGGCTTTGTCTCAAAA 59.971 50.000 12.47 0.00 0.00 2.44
727 728 0.307760 ACGCGGCTTTGTCTCAAAAG 59.692 50.000 12.47 0.00 39.66 2.27
728 729 0.586319 CGCGGCTTTGTCTCAAAAGA 59.414 50.000 0.00 0.00 39.12 2.52
729 730 1.002900 CGCGGCTTTGTCTCAAAAGAA 60.003 47.619 0.00 0.00 39.12 2.52
730 731 2.540769 CGCGGCTTTGTCTCAAAAGAAA 60.541 45.455 0.00 0.00 39.12 2.52
731 732 3.443976 GCGGCTTTGTCTCAAAAGAAAA 58.556 40.909 0.99 0.00 39.12 2.29
732 733 3.862845 GCGGCTTTGTCTCAAAAGAAAAA 59.137 39.130 0.99 0.00 39.12 1.94
793 799 7.066284 GTGTCTCGGTCCAACTACTACTATTTA 59.934 40.741 0.00 0.00 0.00 1.40
849 855 8.567948 TCTTTTCATCAACTCACAAATTAGACC 58.432 33.333 0.00 0.00 0.00 3.85
854 860 6.539649 TCAACTCACAAATTAGACCGAAAG 57.460 37.500 0.00 0.00 0.00 2.62
907 913 4.441415 CACGACGCAATAACTCTAATCTCC 59.559 45.833 0.00 0.00 0.00 3.71
934 940 1.381327 TCCGCGATCCCCTTCTTCT 60.381 57.895 8.23 0.00 0.00 2.85
937 943 0.530870 CGCGATCCCCTTCTTCTTCC 60.531 60.000 0.00 0.00 0.00 3.46
950 963 0.324460 TTCTTCCTCCTCCCCGTCTC 60.324 60.000 0.00 0.00 0.00 3.36
1759 1775 3.346734 GAACCTCCATGGGGGCCA 61.347 66.667 31.98 0.00 41.11 5.36
1773 1789 0.322187 GGGCCACGACCAACATACTT 60.322 55.000 4.39 0.00 0.00 2.24
1827 1849 0.031111 TCTGATCCCCACCCCTACTG 60.031 60.000 0.00 0.00 0.00 2.74
1949 1976 4.520111 AGATGTGTTTGCTGTGATGCTTTA 59.480 37.500 0.00 0.00 0.00 1.85
1978 2005 5.296283 ACAGATGCTGCTGATTTAGTTCATC 59.704 40.000 12.34 0.00 39.20 2.92
2022 2051 8.587072 CAAGGATTGTGGTTTGGGAACAATGT 62.587 42.308 5.08 0.00 45.91 2.71
2081 2110 5.883661 ACATATAAAGTCACAAGTGCATGC 58.116 37.500 11.82 11.82 0.00 4.06
2088 2117 3.319972 AGTCACAAGTGCATGCTTCATTT 59.680 39.130 20.33 0.00 0.00 2.32
2089 2118 4.053295 GTCACAAGTGCATGCTTCATTTT 58.947 39.130 20.33 1.47 0.00 1.82
2104 2133 9.866655 ATGCTTCATTTTATTATCCTCAACCTA 57.133 29.630 0.00 0.00 0.00 3.08
2239 2284 5.407387 GCAATTGTGATGCTTTCTTTCACAT 59.593 36.000 7.40 0.00 46.46 3.21
2285 2333 7.202016 TGATTGTAGTGTTGAACAAGGATTC 57.798 36.000 0.00 0.00 38.87 2.52
2286 2334 6.206634 TGATTGTAGTGTTGAACAAGGATTCC 59.793 38.462 0.00 0.00 38.87 3.01
2292 2340 3.702045 TGTTGAACAAGGATTCCGGTTTT 59.298 39.130 14.39 0.24 0.00 2.43
2295 2343 1.627864 ACAAGGATTCCGGTTTTGGG 58.372 50.000 0.00 0.00 0.00 4.12
2460 2512 8.085296 TCAAACAATTGTTTACGCCATAAGATT 58.915 29.630 30.65 6.42 45.54 2.40
2472 2524 9.745880 TTACGCCATAAGATTCTAAACTTCTAG 57.254 33.333 0.00 0.00 0.00 2.43
2473 2525 7.210873 ACGCCATAAGATTCTAAACTTCTAGG 58.789 38.462 0.00 0.00 0.00 3.02
2474 2526 6.647067 CGCCATAAGATTCTAAACTTCTAGGG 59.353 42.308 0.00 0.00 0.00 3.53
2475 2527 6.428465 GCCATAAGATTCTAAACTTCTAGGGC 59.572 42.308 0.72 0.72 0.00 5.19
2476 2528 6.937465 CCATAAGATTCTAAACTTCTAGGGCC 59.063 42.308 0.00 0.00 0.00 5.80
2477 2529 7.202139 CCATAAGATTCTAAACTTCTAGGGCCT 60.202 40.741 12.58 12.58 0.00 5.19
2478 2530 5.880164 AGATTCTAAACTTCTAGGGCCTC 57.120 43.478 10.74 0.00 0.00 4.70
2479 2531 5.534070 AGATTCTAAACTTCTAGGGCCTCT 58.466 41.667 10.74 0.00 0.00 3.69
2480 2532 5.967551 AGATTCTAAACTTCTAGGGCCTCTT 59.032 40.000 10.74 0.00 0.00 2.85
2481 2533 6.445462 AGATTCTAAACTTCTAGGGCCTCTTT 59.555 38.462 10.74 3.87 0.00 2.52
2482 2534 5.422214 TCTAAACTTCTAGGGCCTCTTTG 57.578 43.478 10.74 1.68 0.00 2.77
2483 2535 5.091552 TCTAAACTTCTAGGGCCTCTTTGA 58.908 41.667 10.74 1.31 0.00 2.69
2484 2536 4.936685 AAACTTCTAGGGCCTCTTTGAT 57.063 40.909 10.74 0.00 0.00 2.57
2485 2537 4.936685 AACTTCTAGGGCCTCTTTGATT 57.063 40.909 10.74 0.00 0.00 2.57
2486 2538 4.495690 ACTTCTAGGGCCTCTTTGATTC 57.504 45.455 10.74 0.00 0.00 2.52
2487 2539 3.846588 ACTTCTAGGGCCTCTTTGATTCA 59.153 43.478 10.74 0.00 0.00 2.57
2488 2540 4.476479 ACTTCTAGGGCCTCTTTGATTCAT 59.524 41.667 10.74 0.00 0.00 2.57
2489 2541 5.667626 ACTTCTAGGGCCTCTTTGATTCATA 59.332 40.000 10.74 0.00 0.00 2.15
2490 2542 5.815233 TCTAGGGCCTCTTTGATTCATAG 57.185 43.478 10.74 0.00 0.00 2.23
2491 2543 3.872459 AGGGCCTCTTTGATTCATAGG 57.128 47.619 0.00 5.38 0.00 2.57
2492 2544 3.397527 AGGGCCTCTTTGATTCATAGGA 58.602 45.455 0.00 0.85 0.00 2.94
2493 2545 3.986134 AGGGCCTCTTTGATTCATAGGAT 59.014 43.478 0.00 0.00 0.00 3.24
2494 2546 4.418190 AGGGCCTCTTTGATTCATAGGATT 59.582 41.667 0.00 0.00 0.00 3.01
2495 2547 5.103344 AGGGCCTCTTTGATTCATAGGATTT 60.103 40.000 0.00 0.00 0.00 2.17
2496 2548 5.600069 GGGCCTCTTTGATTCATAGGATTTT 59.400 40.000 0.84 0.00 0.00 1.82
2497 2549 6.462067 GGGCCTCTTTGATTCATAGGATTTTG 60.462 42.308 0.84 0.00 0.00 2.44
2498 2550 6.322201 GGCCTCTTTGATTCATAGGATTTTGA 59.678 38.462 12.17 0.00 0.00 2.69
2499 2551 7.147846 GGCCTCTTTGATTCATAGGATTTTGAA 60.148 37.037 12.17 0.00 36.38 2.69
2500 2552 8.253113 GCCTCTTTGATTCATAGGATTTTGAAA 58.747 33.333 12.17 0.00 35.63 2.69
2503 2555 9.624697 TCTTTGATTCATAGGATTTTGAAAACG 57.375 29.630 4.57 0.00 35.63 3.60
2504 2556 7.810766 TTGATTCATAGGATTTTGAAAACGC 57.189 32.000 0.00 0.00 35.63 4.84
2505 2557 6.918626 TGATTCATAGGATTTTGAAAACGCA 58.081 32.000 0.00 0.00 35.63 5.24
2506 2558 7.028962 TGATTCATAGGATTTTGAAAACGCAG 58.971 34.615 0.00 0.00 35.63 5.18
2507 2559 5.309323 TCATAGGATTTTGAAAACGCAGG 57.691 39.130 0.00 0.00 0.00 4.85
2508 2560 5.007034 TCATAGGATTTTGAAAACGCAGGA 58.993 37.500 0.00 0.00 0.00 3.86
2509 2561 5.475220 TCATAGGATTTTGAAAACGCAGGAA 59.525 36.000 0.00 0.00 0.00 3.36
2510 2562 4.871933 AGGATTTTGAAAACGCAGGAAT 57.128 36.364 0.00 0.00 0.00 3.01
2511 2563 5.975693 AGGATTTTGAAAACGCAGGAATA 57.024 34.783 0.00 0.00 0.00 1.75
2512 2564 5.954335 AGGATTTTGAAAACGCAGGAATAG 58.046 37.500 0.00 0.00 0.00 1.73
2513 2565 5.102313 GGATTTTGAAAACGCAGGAATAGG 58.898 41.667 0.00 0.00 0.00 2.57
2514 2566 5.105917 GGATTTTGAAAACGCAGGAATAGGA 60.106 40.000 0.00 0.00 0.00 2.94
2515 2567 5.776173 TTTTGAAAACGCAGGAATAGGAA 57.224 34.783 0.00 0.00 0.00 3.36
2516 2568 5.776173 TTTGAAAACGCAGGAATAGGAAA 57.224 34.783 0.00 0.00 0.00 3.13
2517 2569 5.776173 TTGAAAACGCAGGAATAGGAAAA 57.224 34.783 0.00 0.00 0.00 2.29
2518 2570 5.371115 TGAAAACGCAGGAATAGGAAAAG 57.629 39.130 0.00 0.00 0.00 2.27
2519 2571 4.825085 TGAAAACGCAGGAATAGGAAAAGT 59.175 37.500 0.00 0.00 0.00 2.66
2520 2572 4.766404 AAACGCAGGAATAGGAAAAGTG 57.234 40.909 0.00 0.00 0.00 3.16
2521 2573 3.418684 ACGCAGGAATAGGAAAAGTGT 57.581 42.857 0.00 0.00 0.00 3.55
2522 2574 3.751518 ACGCAGGAATAGGAAAAGTGTT 58.248 40.909 0.00 0.00 0.00 3.32
2523 2575 3.502211 ACGCAGGAATAGGAAAAGTGTTG 59.498 43.478 0.00 0.00 0.00 3.33
2524 2576 3.119849 CGCAGGAATAGGAAAAGTGTTGG 60.120 47.826 0.00 0.00 0.00 3.77
2525 2577 3.193479 GCAGGAATAGGAAAAGTGTTGGG 59.807 47.826 0.00 0.00 0.00 4.12
2526 2578 4.407365 CAGGAATAGGAAAAGTGTTGGGT 58.593 43.478 0.00 0.00 0.00 4.51
2527 2579 4.832823 CAGGAATAGGAAAAGTGTTGGGTT 59.167 41.667 0.00 0.00 0.00 4.11
2528 2580 4.832823 AGGAATAGGAAAAGTGTTGGGTTG 59.167 41.667 0.00 0.00 0.00 3.77
2529 2581 4.021456 GGAATAGGAAAAGTGTTGGGTTGG 60.021 45.833 0.00 0.00 0.00 3.77
2530 2582 2.838637 AGGAAAAGTGTTGGGTTGGA 57.161 45.000 0.00 0.00 0.00 3.53
2531 2583 2.666317 AGGAAAAGTGTTGGGTTGGAG 58.334 47.619 0.00 0.00 0.00 3.86
2532 2584 2.024369 AGGAAAAGTGTTGGGTTGGAGT 60.024 45.455 0.00 0.00 0.00 3.85
2533 2585 2.100749 GGAAAAGTGTTGGGTTGGAGTG 59.899 50.000 0.00 0.00 0.00 3.51
2534 2586 1.775385 AAAGTGTTGGGTTGGAGTGG 58.225 50.000 0.00 0.00 0.00 4.00
2535 2587 0.755327 AAGTGTTGGGTTGGAGTGGC 60.755 55.000 0.00 0.00 0.00 5.01
2536 2588 1.454847 GTGTTGGGTTGGAGTGGCA 60.455 57.895 0.00 0.00 0.00 4.92
2537 2589 0.827507 GTGTTGGGTTGGAGTGGCAT 60.828 55.000 0.00 0.00 0.00 4.40
2538 2590 0.827089 TGTTGGGTTGGAGTGGCATG 60.827 55.000 0.00 0.00 0.00 4.06
2539 2591 1.907807 TTGGGTTGGAGTGGCATGC 60.908 57.895 9.90 9.90 0.00 4.06
2540 2592 3.070576 GGGTTGGAGTGGCATGCC 61.071 66.667 30.54 30.54 0.00 4.40
2541 2593 3.070576 GGTTGGAGTGGCATGCCC 61.071 66.667 33.44 23.56 34.56 5.36
2542 2594 2.283101 GTTGGAGTGGCATGCCCA 60.283 61.111 33.44 20.96 42.79 5.36
2551 2603 0.831966 TGGCATGCCCATTTGAATCC 59.168 50.000 33.44 4.70 39.18 3.01
2552 2604 1.125633 GGCATGCCCATTTGAATCCT 58.874 50.000 27.24 0.00 0.00 3.24
2553 2605 2.318908 GGCATGCCCATTTGAATCCTA 58.681 47.619 27.24 0.00 0.00 2.94
2554 2606 2.901839 GGCATGCCCATTTGAATCCTAT 59.098 45.455 27.24 0.00 0.00 2.57
2555 2607 4.088634 GGCATGCCCATTTGAATCCTATA 58.911 43.478 27.24 0.00 0.00 1.31
2556 2608 4.159135 GGCATGCCCATTTGAATCCTATAG 59.841 45.833 27.24 0.00 0.00 1.31
2557 2609 5.012239 GCATGCCCATTTGAATCCTATAGA 58.988 41.667 6.36 0.00 0.00 1.98
2558 2610 5.477984 GCATGCCCATTTGAATCCTATAGAA 59.522 40.000 6.36 0.00 0.00 2.10
2559 2611 6.154021 GCATGCCCATTTGAATCCTATAGAAT 59.846 38.462 6.36 0.00 0.00 2.40
2560 2612 7.310237 GCATGCCCATTTGAATCCTATAGAATT 60.310 37.037 6.36 0.00 0.00 2.17
2561 2613 9.246670 CATGCCCATTTGAATCCTATAGAATTA 57.753 33.333 0.00 0.00 0.00 1.40
2562 2614 8.868522 TGCCCATTTGAATCCTATAGAATTAG 57.131 34.615 0.00 0.00 0.00 1.73
2563 2615 7.394359 TGCCCATTTGAATCCTATAGAATTAGC 59.606 37.037 0.00 0.00 0.00 3.09
2564 2616 7.394359 GCCCATTTGAATCCTATAGAATTAGCA 59.606 37.037 0.00 0.00 0.00 3.49
2565 2617 9.300681 CCCATTTGAATCCTATAGAATTAGCAA 57.699 33.333 0.00 0.00 0.00 3.91
2579 2631 7.766219 AGAATTAGCAATGATTGTTTGATGC 57.234 32.000 7.05 0.00 0.00 3.91
2580 2632 6.759827 AGAATTAGCAATGATTGTTTGATGCC 59.240 34.615 7.05 0.00 34.44 4.40
2581 2633 3.965379 AGCAATGATTGTTTGATGCCA 57.035 38.095 7.05 0.00 34.44 4.92
2582 2634 3.592059 AGCAATGATTGTTTGATGCCAC 58.408 40.909 7.05 0.00 34.44 5.01
2583 2635 2.346244 GCAATGATTGTTTGATGCCACG 59.654 45.455 7.05 0.00 0.00 4.94
2584 2636 2.924926 CAATGATTGTTTGATGCCACGG 59.075 45.455 0.00 0.00 0.00 4.94
2585 2637 0.887247 TGATTGTTTGATGCCACGGG 59.113 50.000 0.00 0.00 0.00 5.28
2586 2638 1.173043 GATTGTTTGATGCCACGGGA 58.827 50.000 0.00 0.00 0.00 5.14
2587 2639 1.543802 GATTGTTTGATGCCACGGGAA 59.456 47.619 0.00 0.00 0.00 3.97
2588 2640 1.403814 TTGTTTGATGCCACGGGAAA 58.596 45.000 0.00 0.00 0.00 3.13
2589 2641 1.403814 TGTTTGATGCCACGGGAAAA 58.596 45.000 0.00 0.00 0.00 2.29
2590 2642 1.757118 TGTTTGATGCCACGGGAAAAA 59.243 42.857 0.00 0.00 0.00 1.94
2591 2643 2.131972 GTTTGATGCCACGGGAAAAAC 58.868 47.619 0.00 4.33 0.00 2.43
2592 2644 1.403814 TTGATGCCACGGGAAAAACA 58.596 45.000 0.00 0.00 0.00 2.83
2593 2645 1.403814 TGATGCCACGGGAAAAACAA 58.596 45.000 0.00 0.00 0.00 2.83
2594 2646 1.757118 TGATGCCACGGGAAAAACAAA 59.243 42.857 0.00 0.00 0.00 2.83
2595 2647 2.223923 TGATGCCACGGGAAAAACAAAG 60.224 45.455 0.00 0.00 0.00 2.77
2596 2648 0.461961 TGCCACGGGAAAAACAAAGG 59.538 50.000 0.00 0.00 0.00 3.11
2597 2649 0.747852 GCCACGGGAAAAACAAAGGA 59.252 50.000 0.00 0.00 0.00 3.36
2598 2650 1.137282 GCCACGGGAAAAACAAAGGAA 59.863 47.619 0.00 0.00 0.00 3.36
2599 2651 2.224185 GCCACGGGAAAAACAAAGGAAT 60.224 45.455 0.00 0.00 0.00 3.01
2600 2652 3.742954 GCCACGGGAAAAACAAAGGAATT 60.743 43.478 0.00 0.00 0.00 2.17
2601 2653 3.807071 CCACGGGAAAAACAAAGGAATTG 59.193 43.478 0.00 0.00 44.95 2.32
2614 2666 6.833342 CAAAGGAATTGTGAAAAGAGGTTG 57.167 37.500 0.00 0.00 34.16 3.77
2615 2667 5.535753 AAGGAATTGTGAAAAGAGGTTGG 57.464 39.130 0.00 0.00 0.00 3.77
2616 2668 4.803452 AGGAATTGTGAAAAGAGGTTGGA 58.197 39.130 0.00 0.00 0.00 3.53
2617 2669 4.829492 AGGAATTGTGAAAAGAGGTTGGAG 59.171 41.667 0.00 0.00 0.00 3.86
2618 2670 4.584743 GGAATTGTGAAAAGAGGTTGGAGT 59.415 41.667 0.00 0.00 0.00 3.85
2619 2671 5.507985 GGAATTGTGAAAAGAGGTTGGAGTG 60.508 44.000 0.00 0.00 0.00 3.51
2620 2672 2.930950 TGTGAAAAGAGGTTGGAGTGG 58.069 47.619 0.00 0.00 0.00 4.00
2621 2673 2.507886 TGTGAAAAGAGGTTGGAGTGGA 59.492 45.455 0.00 0.00 0.00 4.02
2622 2674 3.138283 TGTGAAAAGAGGTTGGAGTGGAT 59.862 43.478 0.00 0.00 0.00 3.41
2623 2675 3.503748 GTGAAAAGAGGTTGGAGTGGATG 59.496 47.826 0.00 0.00 0.00 3.51
2624 2676 3.138283 TGAAAAGAGGTTGGAGTGGATGT 59.862 43.478 0.00 0.00 0.00 3.06
2625 2677 3.884037 AAAGAGGTTGGAGTGGATGTT 57.116 42.857 0.00 0.00 0.00 2.71
2626 2678 4.993705 AAAGAGGTTGGAGTGGATGTTA 57.006 40.909 0.00 0.00 0.00 2.41
2627 2679 4.993705 AAGAGGTTGGAGTGGATGTTAA 57.006 40.909 0.00 0.00 0.00 2.01
2628 2680 4.993705 AGAGGTTGGAGTGGATGTTAAA 57.006 40.909 0.00 0.00 0.00 1.52
2629 2681 5.520748 AGAGGTTGGAGTGGATGTTAAAT 57.479 39.130 0.00 0.00 0.00 1.40
2630 2682 5.892348 AGAGGTTGGAGTGGATGTTAAATT 58.108 37.500 0.00 0.00 0.00 1.82
2631 2683 6.314917 AGAGGTTGGAGTGGATGTTAAATTT 58.685 36.000 0.00 0.00 0.00 1.82
2632 2684 6.434340 AGAGGTTGGAGTGGATGTTAAATTTC 59.566 38.462 0.00 0.00 0.00 2.17
2633 2685 5.480422 AGGTTGGAGTGGATGTTAAATTTCC 59.520 40.000 0.00 0.00 0.00 3.13
2634 2686 5.480422 GGTTGGAGTGGATGTTAAATTTCCT 59.520 40.000 0.00 0.00 0.00 3.36
2635 2687 6.661805 GGTTGGAGTGGATGTTAAATTTCCTA 59.338 38.462 0.00 0.00 0.00 2.94
2636 2688 7.342026 GGTTGGAGTGGATGTTAAATTTCCTAT 59.658 37.037 0.00 0.00 0.00 2.57
2637 2689 9.403583 GTTGGAGTGGATGTTAAATTTCCTATA 57.596 33.333 0.00 0.00 0.00 1.31
2638 2690 9.983024 TTGGAGTGGATGTTAAATTTCCTATAA 57.017 29.630 0.00 0.00 0.00 0.98
2639 2691 9.983024 TGGAGTGGATGTTAAATTTCCTATAAA 57.017 29.630 0.00 0.00 0.00 1.40
2642 2694 9.421399 AGTGGATGTTAAATTTCCTATAAAGGG 57.579 33.333 0.00 0.00 43.84 3.95
2643 2695 8.141909 GTGGATGTTAAATTTCCTATAAAGGGC 58.858 37.037 0.00 0.00 43.84 5.19
2644 2696 7.289084 TGGATGTTAAATTTCCTATAAAGGGCC 59.711 37.037 0.00 0.00 43.84 5.80
2645 2697 7.509318 GGATGTTAAATTTCCTATAAAGGGCCT 59.491 37.037 0.00 0.00 43.84 5.19
2646 2698 7.891498 TGTTAAATTTCCTATAAAGGGCCTC 57.109 36.000 6.46 0.00 43.84 4.70
2647 2699 7.648770 TGTTAAATTTCCTATAAAGGGCCTCT 58.351 34.615 6.46 0.00 43.84 3.69
2648 2700 8.119891 TGTTAAATTTCCTATAAAGGGCCTCTT 58.880 33.333 6.46 6.35 43.84 2.85
2649 2701 8.978472 GTTAAATTTCCTATAAAGGGCCTCTTT 58.022 33.333 19.14 19.14 46.49 2.52
2650 2702 7.423844 AAATTTCCTATAAAGGGCCTCTTTG 57.576 36.000 22.34 10.65 44.68 2.77
2651 2703 5.789574 TTTCCTATAAAGGGCCTCTTTGA 57.210 39.130 22.34 12.27 44.68 2.69
2652 2704 5.994416 TTCCTATAAAGGGCCTCTTTGAT 57.006 39.130 22.34 15.61 44.68 2.57
2653 2705 5.994416 TCCTATAAAGGGCCTCTTTGATT 57.006 39.130 22.34 0.00 44.68 2.57
2654 2706 5.941788 TCCTATAAAGGGCCTCTTTGATTC 58.058 41.667 22.34 0.00 44.68 2.52
2655 2707 5.431731 TCCTATAAAGGGCCTCTTTGATTCA 59.568 40.000 22.34 8.37 44.68 2.57
2656 2708 6.103205 TCCTATAAAGGGCCTCTTTGATTCAT 59.897 38.462 22.34 13.33 44.68 2.57
2657 2709 7.294720 TCCTATAAAGGGCCTCTTTGATTCATA 59.705 37.037 22.34 13.64 44.68 2.15
2658 2710 7.609532 CCTATAAAGGGCCTCTTTGATTCATAG 59.390 40.741 22.34 19.17 44.68 2.23
2659 2711 3.872459 AGGGCCTCTTTGATTCATAGG 57.128 47.619 0.00 5.38 0.00 2.57
2660 2712 3.397527 AGGGCCTCTTTGATTCATAGGA 58.602 45.455 0.00 0.85 0.00 2.94
2661 2713 3.986134 AGGGCCTCTTTGATTCATAGGAT 59.014 43.478 0.00 0.00 0.00 3.24
2662 2714 4.418190 AGGGCCTCTTTGATTCATAGGATT 59.582 41.667 0.00 0.00 0.00 3.01
2663 2715 4.522022 GGGCCTCTTTGATTCATAGGATTG 59.478 45.833 0.84 0.00 0.00 2.67
2664 2716 4.022503 GGCCTCTTTGATTCATAGGATTGC 60.023 45.833 12.17 6.85 0.00 3.56
2665 2717 4.581824 GCCTCTTTGATTCATAGGATTGCA 59.418 41.667 12.17 0.00 0.00 4.08
2666 2718 5.068198 GCCTCTTTGATTCATAGGATTGCAA 59.932 40.000 0.00 0.00 0.00 4.08
2667 2719 6.406177 GCCTCTTTGATTCATAGGATTGCAAA 60.406 38.462 1.71 0.00 0.00 3.68
2668 2720 7.549839 CCTCTTTGATTCATAGGATTGCAAAA 58.450 34.615 1.71 0.00 0.00 2.44
2669 2721 7.705325 CCTCTTTGATTCATAGGATTGCAAAAG 59.295 37.037 1.71 0.00 0.00 2.27
2670 2722 7.037438 TCTTTGATTCATAGGATTGCAAAAGC 58.963 34.615 1.71 0.00 0.00 3.51
2671 2723 5.918426 TGATTCATAGGATTGCAAAAGCA 57.082 34.783 1.71 0.00 0.00 3.91
2672 2724 5.653507 TGATTCATAGGATTGCAAAAGCAC 58.346 37.500 1.71 0.00 0.00 4.40
2673 2725 5.185442 TGATTCATAGGATTGCAAAAGCACA 59.815 36.000 1.71 0.00 0.00 4.57
2674 2726 4.707030 TCATAGGATTGCAAAAGCACAG 57.293 40.909 1.71 0.00 0.00 3.66
2675 2727 3.444742 TCATAGGATTGCAAAAGCACAGG 59.555 43.478 1.71 0.00 0.00 4.00
2676 2728 1.999648 AGGATTGCAAAAGCACAGGA 58.000 45.000 1.71 0.00 0.00 3.86
2677 2729 2.318908 AGGATTGCAAAAGCACAGGAA 58.681 42.857 1.71 0.00 0.00 3.36
2678 2730 2.901839 AGGATTGCAAAAGCACAGGAAT 59.098 40.909 1.71 0.00 0.00 3.01
2679 2731 4.088634 AGGATTGCAAAAGCACAGGAATA 58.911 39.130 1.71 0.00 0.00 1.75
2680 2732 4.159135 AGGATTGCAAAAGCACAGGAATAG 59.841 41.667 1.71 0.00 0.00 1.73
2681 2733 3.940209 TTGCAAAAGCACAGGAATAGG 57.060 42.857 0.00 0.00 0.00 2.57
2682 2734 2.170166 TGCAAAAGCACAGGAATAGGG 58.830 47.619 0.00 0.00 0.00 3.53
2683 2735 2.224992 TGCAAAAGCACAGGAATAGGGA 60.225 45.455 0.00 0.00 0.00 4.20
2684 2736 2.825532 GCAAAAGCACAGGAATAGGGAA 59.174 45.455 0.00 0.00 0.00 3.97
2685 2737 3.258123 GCAAAAGCACAGGAATAGGGAAA 59.742 43.478 0.00 0.00 0.00 3.13
2686 2738 4.262420 GCAAAAGCACAGGAATAGGGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
2687 2739 5.569428 GCAAAAGCACAGGAATAGGGAAAAT 60.569 40.000 0.00 0.00 0.00 1.82
2688 2740 5.665916 AAAGCACAGGAATAGGGAAAATG 57.334 39.130 0.00 0.00 0.00 2.32
2689 2741 4.322057 AGCACAGGAATAGGGAAAATGT 57.678 40.909 0.00 0.00 0.00 2.71
2690 2742 5.450818 AGCACAGGAATAGGGAAAATGTA 57.549 39.130 0.00 0.00 0.00 2.29
2691 2743 5.440610 AGCACAGGAATAGGGAAAATGTAG 58.559 41.667 0.00 0.00 0.00 2.74
2692 2744 4.580580 GCACAGGAATAGGGAAAATGTAGG 59.419 45.833 0.00 0.00 0.00 3.18
2693 2745 5.631481 GCACAGGAATAGGGAAAATGTAGGA 60.631 44.000 0.00 0.00 0.00 2.94
2694 2746 6.605119 CACAGGAATAGGGAAAATGTAGGAT 58.395 40.000 0.00 0.00 0.00 3.24
2695 2747 6.712547 CACAGGAATAGGGAAAATGTAGGATC 59.287 42.308 0.00 0.00 0.00 3.36
2696 2748 5.934625 CAGGAATAGGGAAAATGTAGGATCG 59.065 44.000 0.00 0.00 0.00 3.69
2697 2749 5.013183 AGGAATAGGGAAAATGTAGGATCGG 59.987 44.000 0.00 0.00 0.00 4.18
2698 2750 5.012768 GGAATAGGGAAAATGTAGGATCGGA 59.987 44.000 0.00 0.00 0.00 4.55
2699 2751 6.465321 GGAATAGGGAAAATGTAGGATCGGAA 60.465 42.308 0.00 0.00 0.00 4.30
2700 2752 6.704056 ATAGGGAAAATGTAGGATCGGAAT 57.296 37.500 0.00 0.00 0.00 3.01
2701 2753 4.718961 AGGGAAAATGTAGGATCGGAATG 58.281 43.478 0.00 0.00 0.00 2.67
2702 2754 3.821033 GGGAAAATGTAGGATCGGAATGG 59.179 47.826 0.00 0.00 0.00 3.16
2703 2755 3.253432 GGAAAATGTAGGATCGGAATGGC 59.747 47.826 0.00 0.00 0.00 4.40
2704 2756 3.576078 AAATGTAGGATCGGAATGGCA 57.424 42.857 0.00 0.00 0.00 4.92
2705 2757 3.795688 AATGTAGGATCGGAATGGCAT 57.204 42.857 0.00 0.00 0.00 4.40
2706 2758 2.549064 TGTAGGATCGGAATGGCATG 57.451 50.000 0.00 0.00 0.00 4.06
2707 2759 1.768275 TGTAGGATCGGAATGGCATGT 59.232 47.619 0.00 0.00 0.00 3.21
2708 2760 2.224281 TGTAGGATCGGAATGGCATGTC 60.224 50.000 0.00 0.82 0.00 3.06
2709 2761 0.109342 AGGATCGGAATGGCATGTCC 59.891 55.000 0.00 9.48 0.00 4.02
2718 2770 3.518766 TGGCATGTCCATTGGATCC 57.481 52.632 9.01 4.20 40.72 3.36
2719 2771 0.106066 TGGCATGTCCATTGGATCCC 60.106 55.000 9.90 7.65 40.72 3.85
2720 2772 0.186873 GGCATGTCCATTGGATCCCT 59.813 55.000 9.90 0.00 32.73 4.20
2721 2773 1.425066 GGCATGTCCATTGGATCCCTA 59.575 52.381 9.90 0.00 32.73 3.53
2722 2774 2.042162 GGCATGTCCATTGGATCCCTAT 59.958 50.000 9.90 0.00 32.73 2.57
2723 2775 3.087031 GCATGTCCATTGGATCCCTATG 58.913 50.000 9.90 12.60 36.71 2.23
2741 2793 6.095432 CCTATGGGATTTGTGTTTGTTTGA 57.905 37.500 0.00 0.00 33.58 2.69
2742 2794 6.700352 CCTATGGGATTTGTGTTTGTTTGAT 58.300 36.000 0.00 0.00 33.58 2.57
2743 2795 7.160726 CCTATGGGATTTGTGTTTGTTTGATT 58.839 34.615 0.00 0.00 33.58 2.57
2744 2796 6.864360 ATGGGATTTGTGTTTGTTTGATTG 57.136 33.333 0.00 0.00 0.00 2.67
2745 2797 5.738909 TGGGATTTGTGTTTGTTTGATTGT 58.261 33.333 0.00 0.00 0.00 2.71
2746 2798 5.583854 TGGGATTTGTGTTTGTTTGATTGTG 59.416 36.000 0.00 0.00 0.00 3.33
2747 2799 5.584251 GGGATTTGTGTTTGTTTGATTGTGT 59.416 36.000 0.00 0.00 0.00 3.72
2748 2800 6.238076 GGGATTTGTGTTTGTTTGATTGTGTC 60.238 38.462 0.00 0.00 0.00 3.67
2749 2801 6.312426 GGATTTGTGTTTGTTTGATTGTGTCA 59.688 34.615 0.00 0.00 34.25 3.58
2750 2802 6.459257 TTTGTGTTTGTTTGATTGTGTCAC 57.541 33.333 0.00 0.00 36.32 3.67
2751 2803 4.162072 TGTGTTTGTTTGATTGTGTCACG 58.838 39.130 0.00 0.00 36.32 4.35
2752 2804 3.545873 GTGTTTGTTTGATTGTGTCACGG 59.454 43.478 0.00 0.00 36.32 4.94
2753 2805 3.112580 GTTTGTTTGATTGTGTCACGGG 58.887 45.455 0.00 0.00 36.32 5.28
2754 2806 2.333688 TGTTTGATTGTGTCACGGGA 57.666 45.000 0.00 0.00 36.32 5.14
2755 2807 2.644676 TGTTTGATTGTGTCACGGGAA 58.355 42.857 0.00 0.00 36.32 3.97
2756 2808 3.017442 TGTTTGATTGTGTCACGGGAAA 58.983 40.909 0.00 0.00 36.32 3.13
2757 2809 3.444034 TGTTTGATTGTGTCACGGGAAAA 59.556 39.130 0.00 0.00 36.32 2.29
2758 2810 4.082190 TGTTTGATTGTGTCACGGGAAAAA 60.082 37.500 0.00 0.00 36.32 1.94
2759 2811 3.701532 TGATTGTGTCACGGGAAAAAC 57.298 42.857 0.00 0.00 0.00 2.43
2760 2812 3.017442 TGATTGTGTCACGGGAAAAACA 58.983 40.909 0.00 0.00 0.00 2.83
2761 2813 3.444034 TGATTGTGTCACGGGAAAAACAA 59.556 39.130 12.58 12.58 31.63 2.83
2762 2814 3.936372 TTGTGTCACGGGAAAAACAAA 57.064 38.095 8.85 0.00 0.00 2.83
2763 2815 3.495670 TGTGTCACGGGAAAAACAAAG 57.504 42.857 0.00 0.00 0.00 2.77
2764 2816 2.164624 TGTGTCACGGGAAAAACAAAGG 59.835 45.455 0.00 0.00 0.00 3.11
2765 2817 2.424246 GTGTCACGGGAAAAACAAAGGA 59.576 45.455 0.00 0.00 0.00 3.36
2766 2818 3.067601 GTGTCACGGGAAAAACAAAGGAT 59.932 43.478 0.00 0.00 0.00 3.24
2767 2819 3.702045 TGTCACGGGAAAAACAAAGGATT 59.298 39.130 0.00 0.00 0.00 3.01
2768 2820 4.160626 TGTCACGGGAAAAACAAAGGATTT 59.839 37.500 0.00 0.00 40.26 2.17
2769 2821 4.743151 GTCACGGGAAAAACAAAGGATTTC 59.257 41.667 0.00 0.00 35.03 2.17
2770 2822 4.647399 TCACGGGAAAAACAAAGGATTTCT 59.353 37.500 0.00 0.00 35.03 2.52
2771 2823 5.128008 TCACGGGAAAAACAAAGGATTTCTT 59.872 36.000 0.00 0.00 35.03 2.52
2772 2824 5.462068 CACGGGAAAAACAAAGGATTTCTTC 59.538 40.000 0.00 0.00 35.03 2.87
2773 2825 4.988540 CGGGAAAAACAAAGGATTTCTTCC 59.011 41.667 0.00 0.00 45.85 3.46
2785 2837 5.635417 GGATTTCTTCCAAGAGGTTTGAG 57.365 43.478 0.00 0.00 44.74 3.02
2786 2838 5.073428 GGATTTCTTCCAAGAGGTTTGAGT 58.927 41.667 0.00 0.00 44.74 3.41
2787 2839 5.048434 GGATTTCTTCCAAGAGGTTTGAGTG 60.048 44.000 0.00 0.00 44.74 3.51
2788 2840 3.492102 TCTTCCAAGAGGTTTGAGTGG 57.508 47.619 0.00 0.00 35.89 4.00
2789 2841 3.045634 TCTTCCAAGAGGTTTGAGTGGA 58.954 45.455 0.00 0.00 36.59 4.02
2790 2842 3.652869 TCTTCCAAGAGGTTTGAGTGGAT 59.347 43.478 0.00 0.00 38.16 3.41
2791 2843 3.423539 TCCAAGAGGTTTGAGTGGATG 57.576 47.619 0.00 0.00 33.43 3.51
2792 2844 2.711009 TCCAAGAGGTTTGAGTGGATGT 59.289 45.455 0.00 0.00 33.43 3.06
2793 2845 3.138283 TCCAAGAGGTTTGAGTGGATGTT 59.862 43.478 0.00 0.00 33.43 2.71
2794 2846 4.349636 TCCAAGAGGTTTGAGTGGATGTTA 59.650 41.667 0.00 0.00 33.43 2.41
2795 2847 4.697352 CCAAGAGGTTTGAGTGGATGTTAG 59.303 45.833 0.00 0.00 0.00 2.34
2796 2848 5.513094 CCAAGAGGTTTGAGTGGATGTTAGA 60.513 44.000 0.00 0.00 0.00 2.10
2797 2849 5.825593 AGAGGTTTGAGTGGATGTTAGAA 57.174 39.130 0.00 0.00 0.00 2.10
2798 2850 6.380079 AGAGGTTTGAGTGGATGTTAGAAT 57.620 37.500 0.00 0.00 0.00 2.40
2799 2851 6.784031 AGAGGTTTGAGTGGATGTTAGAATT 58.216 36.000 0.00 0.00 0.00 2.17
2800 2852 6.881602 AGAGGTTTGAGTGGATGTTAGAATTC 59.118 38.462 0.00 0.00 0.00 2.17
2801 2853 5.946377 AGGTTTGAGTGGATGTTAGAATTCC 59.054 40.000 0.65 0.00 0.00 3.01
2802 2854 5.946377 GGTTTGAGTGGATGTTAGAATTCCT 59.054 40.000 0.65 0.00 0.00 3.36
2803 2855 6.127897 GGTTTGAGTGGATGTTAGAATTCCTG 60.128 42.308 0.65 0.00 0.00 3.86
2804 2856 5.762179 TGAGTGGATGTTAGAATTCCTGT 57.238 39.130 0.65 0.00 0.00 4.00
2805 2857 5.491070 TGAGTGGATGTTAGAATTCCTGTG 58.509 41.667 0.65 0.00 0.00 3.66
2806 2858 5.248248 TGAGTGGATGTTAGAATTCCTGTGA 59.752 40.000 0.65 0.00 0.00 3.58
2807 2859 6.126863 AGTGGATGTTAGAATTCCTGTGAA 57.873 37.500 0.65 0.00 34.33 3.18
2808 2860 6.542821 AGTGGATGTTAGAATTCCTGTGAAA 58.457 36.000 0.65 0.00 33.32 2.69
2809 2861 7.177878 AGTGGATGTTAGAATTCCTGTGAAAT 58.822 34.615 0.65 0.00 33.32 2.17
2810 2862 7.121759 AGTGGATGTTAGAATTCCTGTGAAATG 59.878 37.037 0.65 0.00 33.32 2.32
2811 2863 6.947733 TGGATGTTAGAATTCCTGTGAAATGT 59.052 34.615 0.65 0.00 33.32 2.71
2812 2864 8.106462 TGGATGTTAGAATTCCTGTGAAATGTA 58.894 33.333 0.65 0.00 33.32 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 0.315886 TCTGCTTTGTCGCCGTTCTA 59.684 50.000 0.00 0.00 0.00 2.10
237 238 3.003173 CTCCGGCTCTGGGGAACA 61.003 66.667 0.00 0.00 0.00 3.18
465 466 0.603569 AGATCGCCCCATAGCTTACG 59.396 55.000 0.00 0.00 0.00 3.18
562 563 5.605534 ACAATGCTTCGCTAGATTATGAGT 58.394 37.500 0.00 0.00 0.00 3.41
567 568 6.371548 ACTTTGAACAATGCTTCGCTAGATTA 59.628 34.615 0.00 0.00 0.00 1.75
615 616 2.325393 GATCACCGGGGTGCCCTAAG 62.325 65.000 13.03 0.00 45.04 2.18
658 659 9.994432 CTCGTGAAGCTTTATTTAGATCAAAAT 57.006 29.630 0.00 0.00 33.69 1.82
705 706 4.090057 GAGACAAAGCCGCGTGCC 62.090 66.667 14.64 0.00 42.71 5.01
706 707 2.387125 TTTGAGACAAAGCCGCGTGC 62.387 55.000 4.92 8.57 41.71 5.34
707 708 0.028770 TTTTGAGACAAAGCCGCGTG 59.971 50.000 4.92 0.00 0.00 5.34
708 709 0.307760 CTTTTGAGACAAAGCCGCGT 59.692 50.000 4.92 0.00 0.00 6.01
709 710 0.586319 TCTTTTGAGACAAAGCCGCG 59.414 50.000 0.00 0.00 0.00 6.46
710 711 2.774439 TTCTTTTGAGACAAAGCCGC 57.226 45.000 0.00 0.00 0.00 6.53
729 730 2.802106 CGTGCCGGGTGTGTTTTT 59.198 55.556 2.18 0.00 0.00 1.94
730 731 3.894947 GCGTGCCGGGTGTGTTTT 61.895 61.111 2.18 0.00 0.00 2.43
822 828 9.950680 GTCTAATTTGTGAGTTGATGAAAAGAA 57.049 29.630 0.00 0.00 0.00 2.52
860 866 3.377172 GTCGGATTGGATCGGAAATTTGT 59.623 43.478 0.00 0.00 39.80 2.83
862 868 2.949644 GGTCGGATTGGATCGGAAATTT 59.050 45.455 0.00 0.00 39.80 1.82
875 881 2.515996 ATTGCGTCGTGGGTCGGATT 62.516 55.000 0.00 0.00 40.32 3.01
934 940 2.363361 GGAGACGGGGAGGAGGAA 59.637 66.667 0.00 0.00 0.00 3.36
937 943 4.862823 GGGGGAGACGGGGAGGAG 62.863 77.778 0.00 0.00 0.00 3.69
1191 1204 1.756561 GAGCGAGAAGGAGGAGGCT 60.757 63.158 0.00 0.00 0.00 4.58
1551 1567 1.597027 CCTGGGCTTGACGACGTTT 60.597 57.895 0.13 0.00 0.00 3.60
1853 1875 4.096682 TGCACAAGGTAGGTAACAAACAAC 59.903 41.667 0.00 0.00 41.41 3.32
1854 1876 4.096682 GTGCACAAGGTAGGTAACAAACAA 59.903 41.667 13.17 0.00 41.41 2.83
1855 1877 3.628487 GTGCACAAGGTAGGTAACAAACA 59.372 43.478 13.17 0.00 41.41 2.83
1949 1976 5.651139 ACTAAATCAGCAGCATCTGTGAAAT 59.349 36.000 0.00 0.00 35.63 2.17
1978 2005 6.455647 TCCTTGTTAGACACTGTACAATCAG 58.544 40.000 0.00 0.00 40.80 2.90
2022 2051 5.690865 ACAGACAACAATCCACCTAAGAAA 58.309 37.500 0.00 0.00 0.00 2.52
2065 2094 2.300433 TGAAGCATGCACTTGTGACTT 58.700 42.857 21.98 1.00 0.00 3.01
2067 2096 3.293311 AATGAAGCATGCACTTGTGAC 57.707 42.857 21.98 2.33 0.00 3.67
2089 2118 9.967451 TGAACAATTTGTAGGTTGAGGATAATA 57.033 29.630 1.76 0.00 0.00 0.98
2104 2133 6.756542 GCAAACTTTCTAGGTGAACAATTTGT 59.243 34.615 0.00 0.00 35.55 2.83
2189 2219 9.270640 CTAATAAGCTCACAGAATCTTATTGCT 57.729 33.333 13.31 0.00 40.14 3.91
2190 2220 8.014517 GCTAATAAGCTCACAGAATCTTATTGC 58.985 37.037 13.31 11.29 45.85 3.56
2239 2284 7.628769 TCAAATGAACTAAATCAGCAGCATA 57.371 32.000 0.00 0.00 31.76 3.14
2273 2321 2.625790 CCAAAACCGGAATCCTTGTTCA 59.374 45.455 9.46 0.00 0.00 3.18
2274 2322 2.029380 CCCAAAACCGGAATCCTTGTTC 60.029 50.000 9.46 0.00 0.00 3.18
2285 2333 1.044611 ACCATTGTTCCCAAAACCGG 58.955 50.000 0.00 0.00 33.44 5.28
2286 2334 2.749776 GAACCATTGTTCCCAAAACCG 58.250 47.619 0.00 0.00 44.20 4.44
2295 2343 3.713826 TCCACCTAGGAACCATTGTTC 57.286 47.619 17.98 1.01 45.65 3.18
2307 2355 2.567169 TGACAGACAACCATCCACCTAG 59.433 50.000 0.00 0.00 0.00 3.02
2311 2359 2.948979 TGTTTGACAGACAACCATCCAC 59.051 45.455 0.00 0.00 38.29 4.02
2336 2384 6.923012 TGCACTTGTGATTTTATATGCTGTT 58.077 32.000 4.79 0.00 33.03 3.16
2340 2388 8.583810 AATCATGCACTTGTGATTTTATATGC 57.416 30.769 7.32 0.00 41.03 3.14
2372 2421 6.485984 GTGACAATGAGCAGATTGAGGATAAT 59.514 38.462 13.09 0.00 36.89 1.28
2388 2437 5.376625 AGCAAACTTTCTAGGTGACAATGA 58.623 37.500 0.00 0.00 0.00 2.57
2460 2512 5.091552 TCAAAGAGGCCCTAGAAGTTTAGA 58.908 41.667 0.00 0.00 0.00 2.10
2472 2524 3.864789 TCCTATGAATCAAAGAGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
2473 2525 6.322201 TCAAAATCCTATGAATCAAAGAGGCC 59.678 38.462 0.00 0.00 0.00 5.19
2474 2526 7.338800 TCAAAATCCTATGAATCAAAGAGGC 57.661 36.000 4.80 0.00 0.00 4.70
2477 2529 9.624697 CGTTTTCAAAATCCTATGAATCAAAGA 57.375 29.630 0.00 0.00 35.63 2.52
2478 2530 8.375465 GCGTTTTCAAAATCCTATGAATCAAAG 58.625 33.333 0.00 0.00 35.63 2.77
2479 2531 7.869937 TGCGTTTTCAAAATCCTATGAATCAAA 59.130 29.630 0.00 0.00 35.63 2.69
2480 2532 7.374272 TGCGTTTTCAAAATCCTATGAATCAA 58.626 30.769 0.00 0.00 35.63 2.57
2481 2533 6.918626 TGCGTTTTCAAAATCCTATGAATCA 58.081 32.000 0.00 0.00 35.63 2.57
2482 2534 6.473455 CCTGCGTTTTCAAAATCCTATGAATC 59.527 38.462 0.00 0.00 35.63 2.52
2483 2535 6.152661 TCCTGCGTTTTCAAAATCCTATGAAT 59.847 34.615 0.00 0.00 35.63 2.57
2484 2536 5.475220 TCCTGCGTTTTCAAAATCCTATGAA 59.525 36.000 0.00 0.00 33.93 2.57
2485 2537 5.007034 TCCTGCGTTTTCAAAATCCTATGA 58.993 37.500 0.00 0.00 0.00 2.15
2486 2538 5.309323 TCCTGCGTTTTCAAAATCCTATG 57.691 39.130 0.00 0.00 0.00 2.23
2487 2539 5.975693 TTCCTGCGTTTTCAAAATCCTAT 57.024 34.783 0.00 0.00 0.00 2.57
2488 2540 5.975693 ATTCCTGCGTTTTCAAAATCCTA 57.024 34.783 0.00 0.00 0.00 2.94
2489 2541 4.871933 ATTCCTGCGTTTTCAAAATCCT 57.128 36.364 0.00 0.00 0.00 3.24
2490 2542 5.102313 CCTATTCCTGCGTTTTCAAAATCC 58.898 41.667 0.00 0.00 0.00 3.01
2491 2543 5.949735 TCCTATTCCTGCGTTTTCAAAATC 58.050 37.500 0.00 0.00 0.00 2.17
2492 2544 5.975693 TCCTATTCCTGCGTTTTCAAAAT 57.024 34.783 0.00 0.00 0.00 1.82
2493 2545 5.776173 TTCCTATTCCTGCGTTTTCAAAA 57.224 34.783 0.00 0.00 0.00 2.44
2494 2546 5.776173 TTTCCTATTCCTGCGTTTTCAAA 57.224 34.783 0.00 0.00 0.00 2.69
2495 2547 5.300792 ACTTTTCCTATTCCTGCGTTTTCAA 59.699 36.000 0.00 0.00 0.00 2.69
2496 2548 4.825085 ACTTTTCCTATTCCTGCGTTTTCA 59.175 37.500 0.00 0.00 0.00 2.69
2497 2549 5.154222 CACTTTTCCTATTCCTGCGTTTTC 58.846 41.667 0.00 0.00 0.00 2.29
2498 2550 4.583073 ACACTTTTCCTATTCCTGCGTTTT 59.417 37.500 0.00 0.00 0.00 2.43
2499 2551 4.142038 ACACTTTTCCTATTCCTGCGTTT 58.858 39.130 0.00 0.00 0.00 3.60
2500 2552 3.751518 ACACTTTTCCTATTCCTGCGTT 58.248 40.909 0.00 0.00 0.00 4.84
2501 2553 3.418684 ACACTTTTCCTATTCCTGCGT 57.581 42.857 0.00 0.00 0.00 5.24
2502 2554 3.119849 CCAACACTTTTCCTATTCCTGCG 60.120 47.826 0.00 0.00 0.00 5.18
2503 2555 3.193479 CCCAACACTTTTCCTATTCCTGC 59.807 47.826 0.00 0.00 0.00 4.85
2504 2556 4.407365 ACCCAACACTTTTCCTATTCCTG 58.593 43.478 0.00 0.00 0.00 3.86
2505 2557 4.741928 ACCCAACACTTTTCCTATTCCT 57.258 40.909 0.00 0.00 0.00 3.36
2506 2558 4.021456 CCAACCCAACACTTTTCCTATTCC 60.021 45.833 0.00 0.00 0.00 3.01
2507 2559 4.830600 TCCAACCCAACACTTTTCCTATTC 59.169 41.667 0.00 0.00 0.00 1.75
2508 2560 4.810345 TCCAACCCAACACTTTTCCTATT 58.190 39.130 0.00 0.00 0.00 1.73
2509 2561 4.141018 ACTCCAACCCAACACTTTTCCTAT 60.141 41.667 0.00 0.00 0.00 2.57
2510 2562 3.203487 ACTCCAACCCAACACTTTTCCTA 59.797 43.478 0.00 0.00 0.00 2.94
2511 2563 2.024369 ACTCCAACCCAACACTTTTCCT 60.024 45.455 0.00 0.00 0.00 3.36
2512 2564 2.100749 CACTCCAACCCAACACTTTTCC 59.899 50.000 0.00 0.00 0.00 3.13
2513 2565 2.100749 CCACTCCAACCCAACACTTTTC 59.899 50.000 0.00 0.00 0.00 2.29
2514 2566 2.107366 CCACTCCAACCCAACACTTTT 58.893 47.619 0.00 0.00 0.00 2.27
2515 2567 1.775385 CCACTCCAACCCAACACTTT 58.225 50.000 0.00 0.00 0.00 2.66
2516 2568 0.755327 GCCACTCCAACCCAACACTT 60.755 55.000 0.00 0.00 0.00 3.16
2517 2569 1.152756 GCCACTCCAACCCAACACT 60.153 57.895 0.00 0.00 0.00 3.55
2518 2570 0.827507 ATGCCACTCCAACCCAACAC 60.828 55.000 0.00 0.00 0.00 3.32
2519 2571 0.827089 CATGCCACTCCAACCCAACA 60.827 55.000 0.00 0.00 0.00 3.33
2520 2572 1.966762 CATGCCACTCCAACCCAAC 59.033 57.895 0.00 0.00 0.00 3.77
2521 2573 1.907807 GCATGCCACTCCAACCCAA 60.908 57.895 6.36 0.00 0.00 4.12
2522 2574 2.283101 GCATGCCACTCCAACCCA 60.283 61.111 6.36 0.00 0.00 4.51
2523 2575 3.070576 GGCATGCCACTCCAACCC 61.071 66.667 32.08 0.00 35.81 4.11
2524 2576 3.070576 GGGCATGCCACTCCAACC 61.071 66.667 36.56 14.15 37.98 3.77
2525 2577 1.259840 AATGGGCATGCCACTCCAAC 61.260 55.000 36.56 18.56 37.98 3.77
2526 2578 0.544833 AAATGGGCATGCCACTCCAA 60.545 50.000 36.56 15.42 37.98 3.53
2527 2579 1.078891 AAATGGGCATGCCACTCCA 59.921 52.632 36.56 25.30 37.98 3.86
2528 2580 0.971959 TCAAATGGGCATGCCACTCC 60.972 55.000 36.56 20.41 37.98 3.85
2529 2581 0.896923 TTCAAATGGGCATGCCACTC 59.103 50.000 36.56 20.78 37.98 3.51
2530 2582 1.483415 GATTCAAATGGGCATGCCACT 59.517 47.619 36.56 20.94 37.98 4.00
2531 2583 1.473788 GGATTCAAATGGGCATGCCAC 60.474 52.381 36.56 25.50 37.98 5.01
2532 2584 0.831966 GGATTCAAATGGGCATGCCA 59.168 50.000 36.56 23.14 37.98 4.92
2533 2585 1.125633 AGGATTCAAATGGGCATGCC 58.874 50.000 29.47 29.47 0.00 4.40
2534 2586 5.012239 TCTATAGGATTCAAATGGGCATGC 58.988 41.667 9.90 9.90 0.00 4.06
2535 2587 7.713734 ATTCTATAGGATTCAAATGGGCATG 57.286 36.000 0.00 0.00 0.00 4.06
2536 2588 9.471702 CTAATTCTATAGGATTCAAATGGGCAT 57.528 33.333 9.67 0.00 0.00 4.40
2537 2589 7.394359 GCTAATTCTATAGGATTCAAATGGGCA 59.606 37.037 9.67 0.00 0.00 5.36
2538 2590 7.394359 TGCTAATTCTATAGGATTCAAATGGGC 59.606 37.037 9.67 5.60 0.00 5.36
2539 2591 8.868522 TGCTAATTCTATAGGATTCAAATGGG 57.131 34.615 9.67 0.00 0.00 4.00
2553 2605 9.472361 GCATCAAACAATCATTGCTAATTCTAT 57.528 29.630 0.00 0.00 0.00 1.98
2554 2606 7.922278 GGCATCAAACAATCATTGCTAATTCTA 59.078 33.333 0.00 0.00 0.00 2.10
2555 2607 6.759827 GGCATCAAACAATCATTGCTAATTCT 59.240 34.615 0.00 0.00 0.00 2.40
2556 2608 6.535865 TGGCATCAAACAATCATTGCTAATTC 59.464 34.615 0.00 0.00 0.00 2.17
2557 2609 6.314400 GTGGCATCAAACAATCATTGCTAATT 59.686 34.615 0.00 0.00 0.00 1.40
2558 2610 5.813672 GTGGCATCAAACAATCATTGCTAAT 59.186 36.000 0.00 0.00 0.00 1.73
2559 2611 5.170021 GTGGCATCAAACAATCATTGCTAA 58.830 37.500 0.00 0.00 0.00 3.09
2560 2612 4.674885 CGTGGCATCAAACAATCATTGCTA 60.675 41.667 0.00 0.00 0.00 3.49
2561 2613 3.592059 GTGGCATCAAACAATCATTGCT 58.408 40.909 0.00 0.00 0.00 3.91
2562 2614 2.346244 CGTGGCATCAAACAATCATTGC 59.654 45.455 0.00 0.00 0.00 3.56
2563 2615 2.924926 CCGTGGCATCAAACAATCATTG 59.075 45.455 0.00 0.00 0.00 2.82
2564 2616 2.094078 CCCGTGGCATCAAACAATCATT 60.094 45.455 0.00 0.00 0.00 2.57
2565 2617 1.477700 CCCGTGGCATCAAACAATCAT 59.522 47.619 0.00 0.00 0.00 2.45
2566 2618 0.887247 CCCGTGGCATCAAACAATCA 59.113 50.000 0.00 0.00 0.00 2.57
2567 2619 1.173043 TCCCGTGGCATCAAACAATC 58.827 50.000 0.00 0.00 0.00 2.67
2568 2620 1.626686 TTCCCGTGGCATCAAACAAT 58.373 45.000 0.00 0.00 0.00 2.71
2569 2621 1.403814 TTTCCCGTGGCATCAAACAA 58.596 45.000 0.00 0.00 0.00 2.83
2570 2622 1.403814 TTTTCCCGTGGCATCAAACA 58.596 45.000 0.00 0.00 0.00 2.83
2571 2623 2.131972 GTTTTTCCCGTGGCATCAAAC 58.868 47.619 0.00 0.00 0.00 2.93
2572 2624 1.757118 TGTTTTTCCCGTGGCATCAAA 59.243 42.857 0.00 0.00 0.00 2.69
2573 2625 1.403814 TGTTTTTCCCGTGGCATCAA 58.596 45.000 0.00 0.00 0.00 2.57
2574 2626 1.403814 TTGTTTTTCCCGTGGCATCA 58.596 45.000 0.00 0.00 0.00 3.07
2575 2627 2.403259 CTTTGTTTTTCCCGTGGCATC 58.597 47.619 0.00 0.00 0.00 3.91
2576 2628 1.069978 CCTTTGTTTTTCCCGTGGCAT 59.930 47.619 0.00 0.00 0.00 4.40
2577 2629 0.461961 CCTTTGTTTTTCCCGTGGCA 59.538 50.000 0.00 0.00 0.00 4.92
2578 2630 0.747852 TCCTTTGTTTTTCCCGTGGC 59.252 50.000 0.00 0.00 0.00 5.01
2579 2631 3.744238 ATTCCTTTGTTTTTCCCGTGG 57.256 42.857 0.00 0.00 0.00 4.94
2580 2632 4.269844 CACAATTCCTTTGTTTTTCCCGTG 59.730 41.667 0.00 0.00 46.51 4.94
2581 2633 4.160626 TCACAATTCCTTTGTTTTTCCCGT 59.839 37.500 0.00 0.00 46.51 5.28
2582 2634 4.688021 TCACAATTCCTTTGTTTTTCCCG 58.312 39.130 0.00 0.00 46.51 5.14
2583 2635 6.993786 TTTCACAATTCCTTTGTTTTTCCC 57.006 33.333 0.00 0.00 46.51 3.97
2584 2636 8.262715 TCTTTTCACAATTCCTTTGTTTTTCC 57.737 30.769 0.00 0.00 46.51 3.13
2585 2637 8.390354 CCTCTTTTCACAATTCCTTTGTTTTTC 58.610 33.333 0.00 0.00 46.51 2.29
2586 2638 7.882791 ACCTCTTTTCACAATTCCTTTGTTTTT 59.117 29.630 0.00 0.00 46.51 1.94
2587 2639 7.394016 ACCTCTTTTCACAATTCCTTTGTTTT 58.606 30.769 0.00 0.00 46.51 2.43
2588 2640 6.946340 ACCTCTTTTCACAATTCCTTTGTTT 58.054 32.000 0.00 0.00 46.51 2.83
2589 2641 6.544928 ACCTCTTTTCACAATTCCTTTGTT 57.455 33.333 0.00 0.00 46.51 2.83
2591 2643 5.754890 CCAACCTCTTTTCACAATTCCTTTG 59.245 40.000 0.00 0.00 41.36 2.77
2592 2644 5.660864 TCCAACCTCTTTTCACAATTCCTTT 59.339 36.000 0.00 0.00 0.00 3.11
2593 2645 5.208121 TCCAACCTCTTTTCACAATTCCTT 58.792 37.500 0.00 0.00 0.00 3.36
2594 2646 4.803452 TCCAACCTCTTTTCACAATTCCT 58.197 39.130 0.00 0.00 0.00 3.36
2595 2647 4.584743 ACTCCAACCTCTTTTCACAATTCC 59.415 41.667 0.00 0.00 0.00 3.01
2596 2648 5.507985 CCACTCCAACCTCTTTTCACAATTC 60.508 44.000 0.00 0.00 0.00 2.17
2597 2649 4.342092 CCACTCCAACCTCTTTTCACAATT 59.658 41.667 0.00 0.00 0.00 2.32
2598 2650 3.891366 CCACTCCAACCTCTTTTCACAAT 59.109 43.478 0.00 0.00 0.00 2.71
2599 2651 3.053991 TCCACTCCAACCTCTTTTCACAA 60.054 43.478 0.00 0.00 0.00 3.33
2600 2652 2.507886 TCCACTCCAACCTCTTTTCACA 59.492 45.455 0.00 0.00 0.00 3.58
2601 2653 3.208747 TCCACTCCAACCTCTTTTCAC 57.791 47.619 0.00 0.00 0.00 3.18
2602 2654 3.138283 ACATCCACTCCAACCTCTTTTCA 59.862 43.478 0.00 0.00 0.00 2.69
2603 2655 3.756117 ACATCCACTCCAACCTCTTTTC 58.244 45.455 0.00 0.00 0.00 2.29
2604 2656 3.884037 ACATCCACTCCAACCTCTTTT 57.116 42.857 0.00 0.00 0.00 2.27
2605 2657 3.884037 AACATCCACTCCAACCTCTTT 57.116 42.857 0.00 0.00 0.00 2.52
2606 2658 4.993705 TTAACATCCACTCCAACCTCTT 57.006 40.909 0.00 0.00 0.00 2.85
2607 2659 4.993705 TTTAACATCCACTCCAACCTCT 57.006 40.909 0.00 0.00 0.00 3.69
2608 2660 6.350194 GGAAATTTAACATCCACTCCAACCTC 60.350 42.308 0.00 0.00 33.30 3.85
2609 2661 5.480422 GGAAATTTAACATCCACTCCAACCT 59.520 40.000 0.00 0.00 33.30 3.50
2610 2662 5.480422 AGGAAATTTAACATCCACTCCAACC 59.520 40.000 0.00 0.00 35.62 3.77
2611 2663 6.590234 AGGAAATTTAACATCCACTCCAAC 57.410 37.500 0.00 0.00 35.62 3.77
2612 2664 9.983024 TTATAGGAAATTTAACATCCACTCCAA 57.017 29.630 0.00 0.00 35.62 3.53
2613 2665 9.983024 TTTATAGGAAATTTAACATCCACTCCA 57.017 29.630 0.00 0.00 35.62 3.86
2616 2668 9.421399 CCCTTTATAGGAAATTTAACATCCACT 57.579 33.333 0.00 0.00 45.05 4.00
2617 2669 8.141909 GCCCTTTATAGGAAATTTAACATCCAC 58.858 37.037 0.00 0.00 45.05 4.02
2618 2670 7.289084 GGCCCTTTATAGGAAATTTAACATCCA 59.711 37.037 0.00 0.00 45.05 3.41
2619 2671 7.509318 AGGCCCTTTATAGGAAATTTAACATCC 59.491 37.037 0.00 0.00 45.05 3.51
2620 2672 8.478775 AGGCCCTTTATAGGAAATTTAACATC 57.521 34.615 0.00 0.00 45.05 3.06
2621 2673 8.289544 AGAGGCCCTTTATAGGAAATTTAACAT 58.710 33.333 0.00 0.00 45.05 2.71
2622 2674 7.648770 AGAGGCCCTTTATAGGAAATTTAACA 58.351 34.615 0.00 0.00 45.05 2.41
2623 2675 8.534954 AAGAGGCCCTTTATAGGAAATTTAAC 57.465 34.615 0.00 0.00 45.05 2.01
2624 2676 8.977412 CAAAGAGGCCCTTTATAGGAAATTTAA 58.023 33.333 16.03 0.00 45.05 1.52
2625 2677 8.340757 TCAAAGAGGCCCTTTATAGGAAATTTA 58.659 33.333 16.03 0.00 45.05 1.40
2626 2678 7.189087 TCAAAGAGGCCCTTTATAGGAAATTT 58.811 34.615 16.03 0.00 45.05 1.82
2627 2679 6.741724 TCAAAGAGGCCCTTTATAGGAAATT 58.258 36.000 16.03 0.00 45.05 1.82
2628 2680 6.341408 TCAAAGAGGCCCTTTATAGGAAAT 57.659 37.500 16.03 0.00 45.05 2.17
2629 2681 5.789574 TCAAAGAGGCCCTTTATAGGAAA 57.210 39.130 16.03 0.00 45.05 3.13
2630 2682 5.994416 ATCAAAGAGGCCCTTTATAGGAA 57.006 39.130 16.03 2.90 45.05 3.36
2631 2683 5.431731 TGAATCAAAGAGGCCCTTTATAGGA 59.568 40.000 16.03 11.03 45.05 2.94
2632 2684 5.694995 TGAATCAAAGAGGCCCTTTATAGG 58.305 41.667 16.03 7.01 42.88 2.57
2633 2685 7.609532 CCTATGAATCAAAGAGGCCCTTTATAG 59.390 40.741 16.03 16.50 42.88 1.31
2634 2686 7.294720 TCCTATGAATCAAAGAGGCCCTTTATA 59.705 37.037 16.03 10.47 42.88 0.98
2635 2687 6.103205 TCCTATGAATCAAAGAGGCCCTTTAT 59.897 38.462 16.03 10.02 42.88 1.40
2636 2688 5.431731 TCCTATGAATCAAAGAGGCCCTTTA 59.568 40.000 16.03 7.98 42.88 1.85
2637 2689 4.230502 TCCTATGAATCAAAGAGGCCCTTT 59.769 41.667 12.02 12.02 45.48 3.11
2638 2690 3.788142 TCCTATGAATCAAAGAGGCCCTT 59.212 43.478 0.00 0.00 36.47 3.95
2639 2691 3.397527 TCCTATGAATCAAAGAGGCCCT 58.602 45.455 0.00 0.00 0.00 5.19
2640 2692 3.864789 TCCTATGAATCAAAGAGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
2641 2693 4.022503 GCAATCCTATGAATCAAAGAGGCC 60.023 45.833 0.00 0.00 0.00 5.19
2642 2694 4.581824 TGCAATCCTATGAATCAAAGAGGC 59.418 41.667 4.80 3.46 0.00 4.70
2643 2695 6.704289 TTGCAATCCTATGAATCAAAGAGG 57.296 37.500 0.00 3.58 0.00 3.69
2644 2696 7.222224 GCTTTTGCAATCCTATGAATCAAAGAG 59.778 37.037 0.00 0.00 46.58 2.85
2645 2697 7.037438 GCTTTTGCAATCCTATGAATCAAAGA 58.963 34.615 0.00 0.00 46.58 2.52
2646 2698 7.230466 GCTTTTGCAATCCTATGAATCAAAG 57.770 36.000 0.00 0.00 46.58 2.77
2664 2716 5.467035 TTTTCCCTATTCCTGTGCTTTTG 57.533 39.130 0.00 0.00 0.00 2.44
2665 2717 5.543790 ACATTTTCCCTATTCCTGTGCTTTT 59.456 36.000 0.00 0.00 0.00 2.27
2666 2718 5.086621 ACATTTTCCCTATTCCTGTGCTTT 58.913 37.500 0.00 0.00 0.00 3.51
2667 2719 4.677182 ACATTTTCCCTATTCCTGTGCTT 58.323 39.130 0.00 0.00 0.00 3.91
2668 2720 4.322057 ACATTTTCCCTATTCCTGTGCT 57.678 40.909 0.00 0.00 0.00 4.40
2669 2721 4.580580 CCTACATTTTCCCTATTCCTGTGC 59.419 45.833 0.00 0.00 0.00 4.57
2670 2722 6.001449 TCCTACATTTTCCCTATTCCTGTG 57.999 41.667 0.00 0.00 0.00 3.66
2671 2723 6.464465 CGATCCTACATTTTCCCTATTCCTGT 60.464 42.308 0.00 0.00 0.00 4.00
2672 2724 5.934625 CGATCCTACATTTTCCCTATTCCTG 59.065 44.000 0.00 0.00 0.00 3.86
2673 2725 5.013183 CCGATCCTACATTTTCCCTATTCCT 59.987 44.000 0.00 0.00 0.00 3.36
2674 2726 5.012768 TCCGATCCTACATTTTCCCTATTCC 59.987 44.000 0.00 0.00 0.00 3.01
2675 2727 6.110411 TCCGATCCTACATTTTCCCTATTC 57.890 41.667 0.00 0.00 0.00 1.75
2676 2728 6.509523 TTCCGATCCTACATTTTCCCTATT 57.490 37.500 0.00 0.00 0.00 1.73
2677 2729 6.476378 CATTCCGATCCTACATTTTCCCTAT 58.524 40.000 0.00 0.00 0.00 2.57
2678 2730 5.221843 CCATTCCGATCCTACATTTTCCCTA 60.222 44.000 0.00 0.00 0.00 3.53
2679 2731 4.446311 CCATTCCGATCCTACATTTTCCCT 60.446 45.833 0.00 0.00 0.00 4.20
2680 2732 3.821033 CCATTCCGATCCTACATTTTCCC 59.179 47.826 0.00 0.00 0.00 3.97
2681 2733 3.253432 GCCATTCCGATCCTACATTTTCC 59.747 47.826 0.00 0.00 0.00 3.13
2682 2734 3.882888 TGCCATTCCGATCCTACATTTTC 59.117 43.478 0.00 0.00 0.00 2.29
2683 2735 3.897239 TGCCATTCCGATCCTACATTTT 58.103 40.909 0.00 0.00 0.00 1.82
2684 2736 3.576078 TGCCATTCCGATCCTACATTT 57.424 42.857 0.00 0.00 0.00 2.32
2685 2737 3.181440 ACATGCCATTCCGATCCTACATT 60.181 43.478 0.00 0.00 0.00 2.71
2686 2738 2.373169 ACATGCCATTCCGATCCTACAT 59.627 45.455 0.00 0.00 0.00 2.29
2687 2739 1.768275 ACATGCCATTCCGATCCTACA 59.232 47.619 0.00 0.00 0.00 2.74
2688 2740 2.417719 GACATGCCATTCCGATCCTAC 58.582 52.381 0.00 0.00 0.00 3.18
2689 2741 1.347707 GGACATGCCATTCCGATCCTA 59.652 52.381 0.00 0.00 36.34 2.94
2690 2742 0.109342 GGACATGCCATTCCGATCCT 59.891 55.000 0.00 0.00 36.34 3.24
2691 2743 0.179020 TGGACATGCCATTCCGATCC 60.179 55.000 4.93 0.00 43.33 3.36
2692 2744 3.402186 TGGACATGCCATTCCGATC 57.598 52.632 4.93 0.00 43.33 3.69
2701 2753 0.186873 AGGGATCCAATGGACATGCC 59.813 55.000 15.23 4.48 32.98 4.40
2702 2754 2.957402 TAGGGATCCAATGGACATGC 57.043 50.000 15.23 0.00 32.98 4.06
2703 2755 3.693807 CCATAGGGATCCAATGGACATG 58.306 50.000 29.24 14.49 42.36 3.21
2717 2769 5.011533 TCAAACAAACACAAATCCCATAGGG 59.988 40.000 0.00 0.00 46.11 3.53
2718 2770 6.095432 TCAAACAAACACAAATCCCATAGG 57.905 37.500 0.00 0.00 0.00 2.57
2719 2771 7.656948 ACAATCAAACAAACACAAATCCCATAG 59.343 33.333 0.00 0.00 0.00 2.23
2720 2772 7.440556 CACAATCAAACAAACACAAATCCCATA 59.559 33.333 0.00 0.00 0.00 2.74
2721 2773 6.260493 CACAATCAAACAAACACAAATCCCAT 59.740 34.615 0.00 0.00 0.00 4.00
2722 2774 5.583854 CACAATCAAACAAACACAAATCCCA 59.416 36.000 0.00 0.00 0.00 4.37
2723 2775 5.584251 ACACAATCAAACAAACACAAATCCC 59.416 36.000 0.00 0.00 0.00 3.85
2724 2776 6.312426 TGACACAATCAAACAAACACAAATCC 59.688 34.615 0.00 0.00 33.02 3.01
2725 2777 7.172757 GTGACACAATCAAACAAACACAAATC 58.827 34.615 0.00 0.00 39.72 2.17
2726 2778 6.183360 CGTGACACAATCAAACAAACACAAAT 60.183 34.615 6.37 0.00 39.72 2.32
2727 2779 5.117745 CGTGACACAATCAAACAAACACAAA 59.882 36.000 6.37 0.00 39.72 2.83
2728 2780 4.618912 CGTGACACAATCAAACAAACACAA 59.381 37.500 6.37 0.00 39.72 3.33
2729 2781 4.162072 CGTGACACAATCAAACAAACACA 58.838 39.130 6.37 0.00 39.72 3.72
2730 2782 3.545873 CCGTGACACAATCAAACAAACAC 59.454 43.478 6.37 0.00 39.72 3.32
2731 2783 3.428180 CCCGTGACACAATCAAACAAACA 60.428 43.478 6.37 0.00 39.72 2.83
2732 2784 3.112580 CCCGTGACACAATCAAACAAAC 58.887 45.455 6.37 0.00 39.72 2.93
2733 2785 3.017442 TCCCGTGACACAATCAAACAAA 58.983 40.909 6.37 0.00 39.72 2.83
2734 2786 2.644676 TCCCGTGACACAATCAAACAA 58.355 42.857 6.37 0.00 39.72 2.83
2735 2787 2.333688 TCCCGTGACACAATCAAACA 57.666 45.000 6.37 0.00 39.72 2.83
2736 2788 3.701532 TTTCCCGTGACACAATCAAAC 57.298 42.857 6.37 0.00 39.72 2.93
2737 2789 4.082190 TGTTTTTCCCGTGACACAATCAAA 60.082 37.500 6.37 0.00 39.72 2.69
2738 2790 3.444034 TGTTTTTCCCGTGACACAATCAA 59.556 39.130 6.37 0.00 39.72 2.57
2739 2791 3.017442 TGTTTTTCCCGTGACACAATCA 58.983 40.909 6.37 0.00 33.79 2.57
2740 2792 3.701532 TGTTTTTCCCGTGACACAATC 57.298 42.857 6.37 0.00 0.00 2.67
2741 2793 4.429108 CTTTGTTTTTCCCGTGACACAAT 58.571 39.130 6.37 0.00 0.00 2.71
2742 2794 3.367498 CCTTTGTTTTTCCCGTGACACAA 60.367 43.478 6.37 0.00 0.00 3.33
2743 2795 2.164624 CCTTTGTTTTTCCCGTGACACA 59.835 45.455 6.37 0.00 0.00 3.72
2744 2796 2.424246 TCCTTTGTTTTTCCCGTGACAC 59.576 45.455 0.00 0.00 0.00 3.67
2745 2797 2.724454 TCCTTTGTTTTTCCCGTGACA 58.276 42.857 0.00 0.00 0.00 3.58
2746 2798 4.316205 AATCCTTTGTTTTTCCCGTGAC 57.684 40.909 0.00 0.00 0.00 3.67
2747 2799 4.647399 AGAAATCCTTTGTTTTTCCCGTGA 59.353 37.500 0.00 0.00 31.25 4.35
2748 2800 4.944048 AGAAATCCTTTGTTTTTCCCGTG 58.056 39.130 0.00 0.00 31.25 4.94
2749 2801 5.452776 GGAAGAAATCCTTTGTTTTTCCCGT 60.453 40.000 0.00 0.00 45.56 5.28
2750 2802 4.988540 GGAAGAAATCCTTTGTTTTTCCCG 59.011 41.667 0.00 0.00 45.56 5.14
2764 2816 5.048434 CCACTCAAACCTCTTGGAAGAAATC 60.048 44.000 0.00 0.00 34.03 2.17
2765 2817 4.829492 CCACTCAAACCTCTTGGAAGAAAT 59.171 41.667 0.00 0.00 34.03 2.17
2766 2818 4.080015 TCCACTCAAACCTCTTGGAAGAAA 60.080 41.667 0.00 0.00 33.31 2.52
2767 2819 3.458118 TCCACTCAAACCTCTTGGAAGAA 59.542 43.478 0.00 0.00 33.31 2.52
2768 2820 3.045634 TCCACTCAAACCTCTTGGAAGA 58.954 45.455 0.00 0.00 33.31 2.87
2769 2821 3.492102 TCCACTCAAACCTCTTGGAAG 57.508 47.619 0.00 0.00 33.31 3.46
2770 2822 3.138283 ACATCCACTCAAACCTCTTGGAA 59.862 43.478 0.00 0.00 39.77 3.53
2771 2823 2.711009 ACATCCACTCAAACCTCTTGGA 59.289 45.455 0.00 0.00 40.61 3.53
2772 2824 3.146104 ACATCCACTCAAACCTCTTGG 57.854 47.619 0.00 0.00 39.83 3.61
2773 2825 5.551233 TCTAACATCCACTCAAACCTCTTG 58.449 41.667 0.00 0.00 0.00 3.02
2774 2826 5.825593 TCTAACATCCACTCAAACCTCTT 57.174 39.130 0.00 0.00 0.00 2.85
2775 2827 5.825593 TTCTAACATCCACTCAAACCTCT 57.174 39.130 0.00 0.00 0.00 3.69
2776 2828 6.094186 GGAATTCTAACATCCACTCAAACCTC 59.906 42.308 5.23 0.00 33.30 3.85
2777 2829 5.946377 GGAATTCTAACATCCACTCAAACCT 59.054 40.000 5.23 0.00 33.30 3.50
2778 2830 5.946377 AGGAATTCTAACATCCACTCAAACC 59.054 40.000 5.23 0.00 35.62 3.27
2779 2831 6.431234 ACAGGAATTCTAACATCCACTCAAAC 59.569 38.462 5.23 0.00 35.62 2.93
2780 2832 6.430925 CACAGGAATTCTAACATCCACTCAAA 59.569 38.462 5.23 0.00 35.62 2.69
2781 2833 5.939883 CACAGGAATTCTAACATCCACTCAA 59.060 40.000 5.23 0.00 35.62 3.02
2782 2834 5.248248 TCACAGGAATTCTAACATCCACTCA 59.752 40.000 5.23 0.00 35.62 3.41
2783 2835 5.734720 TCACAGGAATTCTAACATCCACTC 58.265 41.667 5.23 0.00 35.62 3.51
2784 2836 5.762179 TCACAGGAATTCTAACATCCACT 57.238 39.130 5.23 0.00 35.62 4.00
2785 2837 6.817765 TTTCACAGGAATTCTAACATCCAC 57.182 37.500 5.23 0.00 35.62 4.02
2786 2838 6.947733 ACATTTCACAGGAATTCTAACATCCA 59.052 34.615 5.23 0.00 35.62 3.41
2787 2839 7.396540 ACATTTCACAGGAATTCTAACATCC 57.603 36.000 5.23 0.00 31.93 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.