Multiple sequence alignment - TraesCS2A01G520100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G520100 chr2A 100.000 3572 0 0 1 3572 743071313 743074884 0.000000e+00 6597
1 TraesCS2A01G520100 chr2A 98.438 64 1 0 3303 3366 743074552 743074615 2.910000e-21 113
2 TraesCS2A01G520100 chr2A 98.438 64 1 0 3240 3303 743074615 743074678 2.910000e-21 113
3 TraesCS2A01G520100 chr2B 94.925 1202 61 0 975 2176 745678722 745679923 0.000000e+00 1882
4 TraesCS2A01G520100 chr2B 98.350 909 14 1 1 908 745677814 745678722 0.000000e+00 1594
5 TraesCS2A01G520100 chr2B 93.060 879 38 8 2006 2867 745679813 745680685 0.000000e+00 1264
6 TraesCS2A01G520100 chr2B 93.594 562 13 4 2742 3303 745680803 745681341 0.000000e+00 817
7 TraesCS2A01G520100 chr2B 95.506 267 12 0 3303 3569 745681278 745681544 9.160000e-116 427
8 TraesCS2A01G520100 chr2B 92.857 126 4 2 2742 2867 745680684 745680804 1.020000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G520100 chr2A 743071313 743074884 3571 False 2274.333333 6597 98.958667 1 3572 3 chr2A.!!$F1 3571
1 TraesCS2A01G520100 chr2B 745677814 745681544 3730 False 1027.000000 1882 94.715333 1 3569 6 chr2B.!!$F1 3568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 966 0.029300 CAAGTCAAACGGTGGCACAG 59.971 55.0 20.82 18.52 41.80 3.66 F
965 967 0.107410 AAGTCAAACGGTGGCACAGA 60.107 50.0 24.38 8.17 41.80 3.41 F
1809 1811 0.108472 CGCTGGATCAGTTCTGCAGA 60.108 55.0 13.74 13.74 33.43 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1817 0.032615 TGTTGAACTTGCCCCTTGGT 60.033 50.0 0.0 0.0 0.00 3.67 R
2137 2139 0.035630 GTGGCTTGAGATGGCTGACT 60.036 55.0 0.0 0.0 0.00 3.41 R
3291 3584 0.033228 TTGATTGCGGGGTTGCTTTG 59.967 50.0 0.0 0.0 35.36 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 203 0.249405 GGTGTTGTTGCATGGGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
208 210 4.299796 GCATGGGTGTGGGGGTGT 62.300 66.667 0.00 0.00 0.00 4.16
493 495 7.279981 CACTAGCCTGCATAATGTTACAGTTAA 59.720 37.037 0.00 0.00 0.00 2.01
572 574 3.873781 CCGTCCTGGGATTTAAGCA 57.126 52.632 0.00 0.00 0.00 3.91
610 612 7.821652 TGAACTCAACTCTGTAGAATGAGTAG 58.178 38.462 20.94 5.64 44.76 2.57
614 616 4.886247 ACTCTGTAGAATGAGTAGCGAC 57.114 45.455 0.00 0.00 41.19 5.19
874 876 2.167487 GAGTCAGGAGTGGAGTGATTCC 59.833 54.545 0.00 0.00 46.98 3.01
897 899 2.825836 GCCACTGAATCTGGGCCG 60.826 66.667 0.00 0.00 40.55 6.13
908 910 1.043116 TCTGGGCCGATAGTGAGGTG 61.043 60.000 0.00 0.00 0.00 4.00
909 911 2.109181 GGGCCGATAGTGAGGTGC 59.891 66.667 0.00 0.00 0.00 5.01
910 912 2.435693 GGGCCGATAGTGAGGTGCT 61.436 63.158 0.00 0.00 0.00 4.40
911 913 1.227380 GGCCGATAGTGAGGTGCTG 60.227 63.158 0.00 0.00 0.00 4.41
912 914 1.517832 GCCGATAGTGAGGTGCTGT 59.482 57.895 0.00 0.00 0.00 4.40
913 915 0.108138 GCCGATAGTGAGGTGCTGTT 60.108 55.000 0.00 0.00 0.00 3.16
914 916 1.645034 CCGATAGTGAGGTGCTGTTG 58.355 55.000 0.00 0.00 0.00 3.33
915 917 1.066858 CCGATAGTGAGGTGCTGTTGT 60.067 52.381 0.00 0.00 0.00 3.32
916 918 2.165641 CCGATAGTGAGGTGCTGTTGTA 59.834 50.000 0.00 0.00 0.00 2.41
917 919 3.181475 CCGATAGTGAGGTGCTGTTGTAT 60.181 47.826 0.00 0.00 0.00 2.29
918 920 4.433615 CGATAGTGAGGTGCTGTTGTATT 58.566 43.478 0.00 0.00 0.00 1.89
919 921 4.504461 CGATAGTGAGGTGCTGTTGTATTC 59.496 45.833 0.00 0.00 0.00 1.75
920 922 5.665459 GATAGTGAGGTGCTGTTGTATTCT 58.335 41.667 0.00 0.00 0.00 2.40
921 923 3.668447 AGTGAGGTGCTGTTGTATTCTG 58.332 45.455 0.00 0.00 0.00 3.02
922 924 2.744202 GTGAGGTGCTGTTGTATTCTGG 59.256 50.000 0.00 0.00 0.00 3.86
923 925 2.371841 TGAGGTGCTGTTGTATTCTGGT 59.628 45.455 0.00 0.00 0.00 4.00
924 926 3.181445 TGAGGTGCTGTTGTATTCTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
925 927 3.412386 AGGTGCTGTTGTATTCTGGTTC 58.588 45.455 0.00 0.00 0.00 3.62
926 928 2.159627 GGTGCTGTTGTATTCTGGTTCG 59.840 50.000 0.00 0.00 0.00 3.95
927 929 2.159627 GTGCTGTTGTATTCTGGTTCGG 59.840 50.000 0.00 0.00 0.00 4.30
928 930 1.130561 GCTGTTGTATTCTGGTTCGGC 59.869 52.381 0.00 0.00 0.00 5.54
929 931 2.699954 CTGTTGTATTCTGGTTCGGCT 58.300 47.619 0.00 0.00 0.00 5.52
930 932 3.074412 CTGTTGTATTCTGGTTCGGCTT 58.926 45.455 0.00 0.00 0.00 4.35
931 933 2.811431 TGTTGTATTCTGGTTCGGCTTG 59.189 45.455 0.00 0.00 0.00 4.01
932 934 3.071479 GTTGTATTCTGGTTCGGCTTGA 58.929 45.455 0.00 0.00 0.00 3.02
933 935 2.695359 TGTATTCTGGTTCGGCTTGAC 58.305 47.619 0.00 0.00 0.00 3.18
934 936 1.659098 GTATTCTGGTTCGGCTTGACG 59.341 52.381 0.00 0.00 0.00 4.35
935 937 1.298859 ATTCTGGTTCGGCTTGACGC 61.299 55.000 0.00 0.00 38.13 5.19
936 938 2.652382 TTCTGGTTCGGCTTGACGCA 62.652 55.000 0.00 0.00 41.67 5.24
937 939 2.031919 TGGTTCGGCTTGACGCAT 59.968 55.556 0.00 0.00 41.67 4.73
938 940 1.577328 CTGGTTCGGCTTGACGCATT 61.577 55.000 0.00 0.00 41.67 3.56
939 941 1.154225 GGTTCGGCTTGACGCATTG 60.154 57.895 0.00 0.00 41.67 2.82
940 942 1.573829 GGTTCGGCTTGACGCATTGA 61.574 55.000 0.00 0.00 41.67 2.57
941 943 0.237235 GTTCGGCTTGACGCATTGAA 59.763 50.000 0.00 0.00 41.67 2.69
942 944 0.516877 TTCGGCTTGACGCATTGAAG 59.483 50.000 0.00 0.00 41.67 3.02
943 945 0.602638 TCGGCTTGACGCATTGAAGT 60.603 50.000 0.00 0.00 41.67 3.01
944 946 0.179215 CGGCTTGACGCATTGAAGTC 60.179 55.000 5.96 5.96 41.67 3.01
945 947 0.169009 GGCTTGACGCATTGAAGTCC 59.831 55.000 9.28 0.00 41.67 3.85
946 948 0.874390 GCTTGACGCATTGAAGTCCA 59.126 50.000 9.28 0.30 38.92 4.02
947 949 1.266718 GCTTGACGCATTGAAGTCCAA 59.733 47.619 9.28 0.00 39.41 3.53
948 950 2.666619 GCTTGACGCATTGAAGTCCAAG 60.667 50.000 9.28 0.00 38.31 3.61
949 951 2.254546 TGACGCATTGAAGTCCAAGT 57.745 45.000 9.28 0.00 38.31 3.16
950 952 2.143122 TGACGCATTGAAGTCCAAGTC 58.857 47.619 9.28 0.00 38.31 3.01
951 953 2.143122 GACGCATTGAAGTCCAAGTCA 58.857 47.619 0.00 0.00 38.31 3.41
952 954 2.548057 GACGCATTGAAGTCCAAGTCAA 59.452 45.455 0.00 0.00 38.31 3.18
953 955 2.948979 ACGCATTGAAGTCCAAGTCAAA 59.051 40.909 0.00 0.00 37.31 2.69
954 956 3.243068 ACGCATTGAAGTCCAAGTCAAAC 60.243 43.478 0.00 0.00 37.31 2.93
955 957 3.300009 GCATTGAAGTCCAAGTCAAACG 58.700 45.455 0.00 0.00 37.31 3.60
956 958 3.853307 GCATTGAAGTCCAAGTCAAACGG 60.853 47.826 0.00 0.00 37.31 4.44
957 959 2.702592 TGAAGTCCAAGTCAAACGGT 57.297 45.000 0.00 0.00 0.00 4.83
958 960 2.285083 TGAAGTCCAAGTCAAACGGTG 58.715 47.619 0.00 0.00 0.00 4.94
959 961 1.602377 GAAGTCCAAGTCAAACGGTGG 59.398 52.381 0.00 0.00 31.82 4.61
960 962 0.818040 AGTCCAAGTCAAACGGTGGC 60.818 55.000 0.00 0.00 31.00 5.01
961 963 1.098712 GTCCAAGTCAAACGGTGGCA 61.099 55.000 0.00 0.00 32.63 4.92
962 964 1.098712 TCCAAGTCAAACGGTGGCAC 61.099 55.000 9.70 9.70 32.63 5.01
963 965 1.380403 CCAAGTCAAACGGTGGCACA 61.380 55.000 20.82 0.00 32.63 4.57
964 966 0.029300 CAAGTCAAACGGTGGCACAG 59.971 55.000 20.82 18.52 41.80 3.66
965 967 0.107410 AAGTCAAACGGTGGCACAGA 60.107 50.000 24.38 8.17 41.80 3.41
966 968 0.108585 AGTCAAACGGTGGCACAGAT 59.891 50.000 24.38 9.94 41.80 2.90
967 969 0.951558 GTCAAACGGTGGCACAGATT 59.048 50.000 24.38 15.77 41.80 2.40
968 970 2.147958 GTCAAACGGTGGCACAGATTA 58.852 47.619 24.38 5.51 41.80 1.75
969 971 2.095919 GTCAAACGGTGGCACAGATTAC 60.096 50.000 24.38 12.77 41.80 1.89
970 972 1.876799 CAAACGGTGGCACAGATTACA 59.123 47.619 24.38 0.00 41.80 2.41
971 973 2.264005 AACGGTGGCACAGATTACAA 57.736 45.000 24.38 0.00 41.80 2.41
972 974 2.489938 ACGGTGGCACAGATTACAAT 57.510 45.000 24.38 0.00 41.80 2.71
973 975 2.790433 ACGGTGGCACAGATTACAATT 58.210 42.857 24.38 0.00 41.80 2.32
974 976 3.153919 ACGGTGGCACAGATTACAATTT 58.846 40.909 24.38 0.00 41.80 1.82
997 999 4.039042 CCCCCATTTCAGCCTTGG 57.961 61.111 0.00 0.00 0.00 3.61
1009 1011 3.624777 TCAGCCTTGGAAATGAGGATTC 58.375 45.455 0.00 0.00 0.00 2.52
1059 1061 4.400251 TCCCTGATTTCATCTGATGCAAAC 59.600 41.667 12.78 7.91 0.00 2.93
1060 1062 4.441079 CCCTGATTTCATCTGATGCAAACC 60.441 45.833 12.78 6.42 0.00 3.27
1062 1064 2.634982 TTTCATCTGATGCAAACCGC 57.365 45.000 12.78 0.00 42.89 5.68
1088 1090 1.567504 CCGTGTTTGTCTCGTCACTT 58.432 50.000 0.00 0.00 0.00 3.16
1113 1115 7.961325 TTCTACCTTTGAAAATTTTGATGCC 57.039 32.000 8.47 0.00 0.00 4.40
1122 1124 6.866480 TGAAAATTTTGATGCCTATCCAGTC 58.134 36.000 8.47 0.00 32.09 3.51
1218 1220 9.368674 TCATGTAAATTTTTCTTGCATGTATGG 57.631 29.630 11.61 0.00 43.37 2.74
1248 1250 5.013704 TCTGTTTAGTTGGCATTCTAGGGAA 59.986 40.000 0.00 0.00 35.78 3.97
1360 1362 2.084546 CTAAAAGCAAGGACGGAAGGG 58.915 52.381 0.00 0.00 0.00 3.95
1371 1373 3.595691 CGGAAGGGAGATCAATCCG 57.404 57.895 9.27 9.27 45.88 4.18
1386 1388 4.380531 TCAATCCGTATCTTGCCAAGATC 58.619 43.478 22.62 13.35 44.79 2.75
1410 1412 4.081406 TCAAGATGAACCCAAGAATGGTG 58.919 43.478 0.00 0.00 46.01 4.17
1472 1474 2.879103 ACTGTGGAAAACCATCGGAT 57.121 45.000 0.00 0.00 0.00 4.18
1498 1500 1.055849 TCCTTTAGGTGCTGCTGTGA 58.944 50.000 0.00 0.00 36.34 3.58
1528 1530 8.650143 ATCTAACCTGAGGATCTCTTATTCTC 57.350 38.462 4.99 0.00 34.92 2.87
1529 1531 7.587258 TCTAACCTGAGGATCTCTTATTCTCA 58.413 38.462 4.99 0.00 34.92 3.27
1569 1571 2.689983 CAATATCCTGCCAAAGTCACCC 59.310 50.000 0.00 0.00 0.00 4.61
1575 1577 2.038837 GCCAAAGTCACCCGGCTAC 61.039 63.158 0.00 0.00 41.50 3.58
1636 1638 7.095271 GGATAGCAATAAGAGATCTTGTGAAGC 60.095 40.741 5.34 4.88 37.40 3.86
1644 1646 3.817647 GAGATCTTGTGAAGCAGTTGGTT 59.182 43.478 0.00 0.00 38.61 3.67
1648 1650 1.679139 TGTGAAGCAGTTGGTTGAGG 58.321 50.000 0.70 0.00 35.69 3.86
1713 1715 1.202806 TGGCTTGAGAAGTTGGGTGAG 60.203 52.381 0.00 0.00 0.00 3.51
1732 1734 3.282021 GAGCCTCAGCCACAAATATTCA 58.718 45.455 0.00 0.00 41.25 2.57
1791 1793 4.495184 GCCCGTTTCTATTACCATGTTTCG 60.495 45.833 0.00 0.00 0.00 3.46
1792 1794 4.495184 CCCGTTTCTATTACCATGTTTCGC 60.495 45.833 0.00 0.00 0.00 4.70
1809 1811 0.108472 CGCTGGATCAGTTCTGCAGA 60.108 55.000 13.74 13.74 33.43 4.26
1815 1817 3.072915 TGGATCAGTTCTGCAGAAAGGAA 59.927 43.478 29.99 16.09 35.58 3.36
1836 1838 1.693606 CCAAGGGGCAAGTTCAACATT 59.306 47.619 0.00 0.00 0.00 2.71
1864 1866 4.696877 TGAATGATTCTGAATTGCGTGAGT 59.303 37.500 6.73 0.00 0.00 3.41
1872 1874 0.877071 AATTGCGTGAGTTGCTGAGG 59.123 50.000 0.00 0.00 0.00 3.86
1893 1895 4.482772 AGGGAGATAGGTGACCTTAGAGAA 59.517 45.833 10.53 0.00 34.61 2.87
1926 1928 2.807967 TGCCGAACTGAATGAGTTTCTG 59.192 45.455 0.00 0.00 45.48 3.02
2053 2055 2.360852 CAGGCCAGCAGGGTCAAG 60.361 66.667 5.01 0.00 46.80 3.02
2083 2085 2.360852 CAGGCCAGCAGGGTCAAG 60.361 66.667 5.01 0.00 46.80 3.02
2142 2144 1.521450 CCACAGGCCAGCAAAGTCAG 61.521 60.000 5.01 0.00 0.00 3.51
2146 2148 1.980772 GGCCAGCAAAGTCAGCCAT 60.981 57.895 0.00 0.00 43.32 4.40
2148 2150 0.964358 GCCAGCAAAGTCAGCCATCT 60.964 55.000 0.00 0.00 0.00 2.90
2149 2151 1.093159 CCAGCAAAGTCAGCCATCTC 58.907 55.000 0.00 0.00 0.00 2.75
2150 2152 1.612462 CCAGCAAAGTCAGCCATCTCA 60.612 52.381 0.00 0.00 0.00 3.27
2202 2273 0.951040 GAGGTGGCCAGAGTCAAACG 60.951 60.000 5.11 0.00 0.00 3.60
2207 2278 1.305201 GGCCAGAGTCAAACGTTCAA 58.695 50.000 0.00 0.00 0.00 2.69
2280 2351 0.251297 TCCCACAAGGACAGGCATTG 60.251 55.000 0.00 0.00 40.93 2.82
2296 2367 2.242043 CATTGCAAACTCAGGACCCTT 58.758 47.619 1.71 0.00 0.00 3.95
2311 2382 0.737219 CCCTTATGCACTGCTTCAGC 59.263 55.000 1.98 0.00 42.50 4.26
2332 2403 1.973812 GCCAGACTCAAAGGTGGGC 60.974 63.158 0.00 0.00 32.02 5.36
2373 2444 1.904865 CAACAGCCCTGTGCATGGT 60.905 57.895 1.07 0.00 44.13 3.55
2428 2499 3.000222 TCAAAGATCGATGTTGAATCGCG 60.000 43.478 8.76 0.00 40.95 5.87
2430 2501 1.202417 AGATCGATGTTGAATCGCGGT 60.202 47.619 6.13 0.00 40.95 5.68
2546 2618 2.565841 GAGTGCTTGTTTGGTGAGACT 58.434 47.619 0.00 0.00 0.00 3.24
2582 2654 7.041107 GGAAATTTGCAATAGACCAGCATAAA 58.959 34.615 0.00 0.00 38.19 1.40
2610 2682 8.087982 TGATGTTCAACAAGAATGAGACTTAC 57.912 34.615 0.00 0.00 38.76 2.34
2611 2683 6.861065 TGTTCAACAAGAATGAGACTTACC 57.139 37.500 0.00 0.00 38.76 2.85
2634 2706 5.422331 CCAGAACCAATCAACTAGTCCTAGA 59.578 44.000 8.29 0.00 36.97 2.43
2636 2708 7.038659 CAGAACCAATCAACTAGTCCTAGAAG 58.961 42.308 8.29 0.90 36.97 2.85
2640 2712 6.098982 ACCAATCAACTAGTCCTAGAAGATGG 59.901 42.308 8.29 13.61 36.97 3.51
2692 2764 5.556355 CATCAGTTGCTGCAAGATCTTAA 57.444 39.130 16.53 0.00 34.07 1.85
2693 2765 5.330295 CATCAGTTGCTGCAAGATCTTAAC 58.670 41.667 16.53 8.67 34.07 2.01
2694 2766 4.388485 TCAGTTGCTGCAAGATCTTAACA 58.612 39.130 16.53 13.13 34.07 2.41
2754 2832 3.982576 ACAATCCTGGTGAAACGTTTC 57.017 42.857 29.72 29.72 38.12 2.78
2761 2839 4.109766 CCTGGTGAAACGTTTCCTTTTTC 58.890 43.478 32.14 17.55 38.12 2.29
2764 2842 4.109766 GGTGAAACGTTTCCTTTTTCCTG 58.890 43.478 32.14 0.00 38.12 3.86
2787 2865 2.486410 ATCTGGTCCCTTCCCCGGAA 62.486 60.000 0.73 0.00 39.51 4.30
2788 2866 2.121872 TGGTCCCTTCCCCGGAAA 60.122 61.111 0.73 0.00 33.34 3.13
2794 2986 2.680370 CCTTCCCCGGAAAGGAGGG 61.680 68.421 23.98 18.02 43.50 4.30
2867 3059 3.797451 TTTGCACTTTGTTGAGCATGA 57.203 38.095 0.00 0.00 36.80 3.07
2869 3061 5.450592 TTTGCACTTTGTTGAGCATGATA 57.549 34.783 0.00 0.00 36.80 2.15
2872 3064 6.028146 TGCACTTTGTTGAGCATGATAAAT 57.972 33.333 0.00 0.00 31.05 1.40
2873 3065 5.865013 TGCACTTTGTTGAGCATGATAAATG 59.135 36.000 0.00 0.00 31.05 2.32
2874 3066 5.865552 GCACTTTGTTGAGCATGATAAATGT 59.134 36.000 0.00 0.00 0.00 2.71
3052 3345 4.160252 GGTAAAATGATCCCATGCACTTGT 59.840 41.667 0.00 0.00 32.36 3.16
3074 3367 7.462109 TGTTGAGCAATACAAATGTTTTGAC 57.538 32.000 17.27 11.59 38.63 3.18
3111 3404 3.441572 CGGATCCACTTTTTGAGCTGAAT 59.558 43.478 13.41 0.00 0.00 2.57
3152 3445 7.817641 TGCGTCCAATTTATTGTTATGTTGTA 58.182 30.769 2.13 0.00 36.06 2.41
3292 3585 9.967451 TGGAGACATAAAATAATCCACTTTACA 57.033 29.630 0.00 0.00 32.04 2.41
3300 3593 8.601845 AAAATAATCCACTTTACAAAGCAACC 57.398 30.769 1.60 0.00 39.63 3.77
3301 3594 4.600692 AATCCACTTTACAAAGCAACCC 57.399 40.909 1.60 0.00 39.63 4.11
3302 3595 2.312390 TCCACTTTACAAAGCAACCCC 58.688 47.619 1.60 0.00 39.63 4.95
3303 3596 1.000717 CCACTTTACAAAGCAACCCCG 60.001 52.381 1.60 0.00 39.63 5.73
3304 3597 0.671796 ACTTTACAAAGCAACCCCGC 59.328 50.000 1.60 0.00 39.63 6.13
3305 3598 0.671251 CTTTACAAAGCAACCCCGCA 59.329 50.000 0.00 0.00 0.00 5.69
3306 3599 1.067821 CTTTACAAAGCAACCCCGCAA 59.932 47.619 0.00 0.00 0.00 4.85
3307 3600 1.333177 TTACAAAGCAACCCCGCAAT 58.667 45.000 0.00 0.00 0.00 3.56
3308 3601 0.885196 TACAAAGCAACCCCGCAATC 59.115 50.000 0.00 0.00 0.00 2.67
3309 3602 1.112315 ACAAAGCAACCCCGCAATCA 61.112 50.000 0.00 0.00 0.00 2.57
3310 3603 0.033228 CAAAGCAACCCCGCAATCAA 59.967 50.000 0.00 0.00 0.00 2.57
3311 3604 0.318120 AAAGCAACCCCGCAATCAAG 59.682 50.000 0.00 0.00 0.00 3.02
3312 3605 0.539438 AAGCAACCCCGCAATCAAGA 60.539 50.000 0.00 0.00 0.00 3.02
3313 3606 0.962356 AGCAACCCCGCAATCAAGAG 60.962 55.000 0.00 0.00 0.00 2.85
3314 3607 0.960364 GCAACCCCGCAATCAAGAGA 60.960 55.000 0.00 0.00 0.00 3.10
3315 3608 1.089920 CAACCCCGCAATCAAGAGAG 58.910 55.000 0.00 0.00 0.00 3.20
3316 3609 0.693049 AACCCCGCAATCAAGAGAGT 59.307 50.000 0.00 0.00 0.00 3.24
3317 3610 0.036010 ACCCCGCAATCAAGAGAGTG 60.036 55.000 0.00 0.00 42.48 3.51
3318 3611 0.745845 CCCCGCAATCAAGAGAGTGG 60.746 60.000 0.00 0.00 40.08 4.00
3319 3612 0.250234 CCCGCAATCAAGAGAGTGGA 59.750 55.000 0.00 0.00 40.08 4.02
3320 3613 1.134280 CCCGCAATCAAGAGAGTGGAT 60.134 52.381 0.00 0.00 40.08 3.41
3321 3614 2.636830 CCGCAATCAAGAGAGTGGATT 58.363 47.619 0.00 0.00 40.08 3.01
3322 3615 3.432186 CCCGCAATCAAGAGAGTGGATTA 60.432 47.826 0.00 0.00 40.08 1.75
3323 3616 3.557595 CCGCAATCAAGAGAGTGGATTAC 59.442 47.826 0.00 0.00 40.08 1.89
3324 3617 4.183865 CGCAATCAAGAGAGTGGATTACA 58.816 43.478 0.00 0.00 40.08 2.41
3424 3717 3.036091 GCTAACCCATGGTACCTAGACA 58.964 50.000 14.36 0.00 33.12 3.41
3452 3745 4.348486 TGTGCAAATACATGGGGTAATGT 58.652 39.130 0.00 0.00 43.21 2.71
3455 3748 5.592688 GTGCAAATACATGGGGTAATGTAGT 59.407 40.000 0.00 0.00 44.15 2.73
3463 3756 7.790782 ACATGGGGTAATGTAGTTCAAATTT 57.209 32.000 0.00 0.00 39.01 1.82
3477 3770 9.394477 GTAGTTCAAATTTTAGTCACCATGTTC 57.606 33.333 0.00 0.00 0.00 3.18
3506 3799 7.355332 CATTTTCTGACCTAAATGCCAAAAG 57.645 36.000 0.00 0.00 35.64 2.27
3526 3819 7.201539 CCAAAAGCGATCAAAATGATATTTGCA 60.202 33.333 0.00 0.00 37.20 4.08
3540 3833 9.729281 AATGATATTTGCATTCTTCCACTTTTT 57.271 25.926 0.00 0.00 30.54 1.94
3545 3838 3.321682 TGCATTCTTCCACTTTTTCAGGG 59.678 43.478 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 203 0.324645 AAGCAATGGATGACACCCCC 60.325 55.000 0.00 0.00 0.00 5.40
208 210 5.988310 ATGAACTTTGAAGCAATGGATGA 57.012 34.783 0.00 0.00 0.00 2.92
247 249 8.688151 AGCTCGAATATTAGAGTGACTAAGTTT 58.312 33.333 21.92 0.00 43.16 2.66
514 516 6.273071 GTTTGCCAAGAAAGTTCATTACACT 58.727 36.000 0.00 0.00 0.00 3.55
572 574 7.175641 CAGAGTTGAGTTCATTTCTACCCAATT 59.824 37.037 0.00 0.00 0.00 2.32
610 612 0.320771 AGAACCAGTGTGGATGTCGC 60.321 55.000 0.00 0.00 40.96 5.19
614 616 1.888512 CCCAAAGAACCAGTGTGGATG 59.111 52.381 0.00 0.00 40.96 3.51
828 830 1.301716 GCTCCTGGACGCAACAAGA 60.302 57.895 11.62 0.00 0.00 3.02
874 876 1.088340 CCAGATTCAGTGGCTGCTCG 61.088 60.000 0.00 0.00 0.00 5.03
879 881 2.679716 GGCCCAGATTCAGTGGCT 59.320 61.111 0.00 0.00 43.50 4.75
897 899 5.521735 CAGAATACAACAGCACCTCACTATC 59.478 44.000 0.00 0.00 0.00 2.08
908 910 1.130561 GCCGAACCAGAATACAACAGC 59.869 52.381 0.00 0.00 0.00 4.40
909 911 2.699954 AGCCGAACCAGAATACAACAG 58.300 47.619 0.00 0.00 0.00 3.16
910 912 2.811431 CAAGCCGAACCAGAATACAACA 59.189 45.455 0.00 0.00 0.00 3.33
911 913 3.071479 TCAAGCCGAACCAGAATACAAC 58.929 45.455 0.00 0.00 0.00 3.32
912 914 3.071479 GTCAAGCCGAACCAGAATACAA 58.929 45.455 0.00 0.00 0.00 2.41
913 915 2.695359 GTCAAGCCGAACCAGAATACA 58.305 47.619 0.00 0.00 0.00 2.29
914 916 1.659098 CGTCAAGCCGAACCAGAATAC 59.341 52.381 0.00 0.00 0.00 1.89
915 917 2.004583 CGTCAAGCCGAACCAGAATA 57.995 50.000 0.00 0.00 0.00 1.75
916 918 1.298859 GCGTCAAGCCGAACCAGAAT 61.299 55.000 0.00 0.00 40.81 2.40
917 919 1.959226 GCGTCAAGCCGAACCAGAA 60.959 57.895 0.00 0.00 40.81 3.02
918 920 2.357034 GCGTCAAGCCGAACCAGA 60.357 61.111 0.00 0.00 40.81 3.86
928 930 2.549754 ACTTGGACTTCAATGCGTCAAG 59.450 45.455 0.00 0.00 34.45 3.02
929 931 2.548057 GACTTGGACTTCAATGCGTCAA 59.452 45.455 5.24 0.00 34.45 3.18
930 932 2.143122 GACTTGGACTTCAATGCGTCA 58.857 47.619 5.24 0.00 34.45 4.35
931 933 2.143122 TGACTTGGACTTCAATGCGTC 58.857 47.619 0.00 0.00 34.45 5.19
932 934 2.254546 TGACTTGGACTTCAATGCGT 57.745 45.000 0.00 0.00 34.45 5.24
933 935 3.300009 GTTTGACTTGGACTTCAATGCG 58.700 45.455 0.00 0.00 34.45 4.73
934 936 3.300009 CGTTTGACTTGGACTTCAATGC 58.700 45.455 0.00 0.00 34.45 3.56
935 937 3.315191 ACCGTTTGACTTGGACTTCAATG 59.685 43.478 0.00 0.00 34.45 2.82
936 938 3.315191 CACCGTTTGACTTGGACTTCAAT 59.685 43.478 0.00 0.00 34.45 2.57
937 939 2.680841 CACCGTTTGACTTGGACTTCAA 59.319 45.455 0.00 0.00 0.00 2.69
938 940 2.285083 CACCGTTTGACTTGGACTTCA 58.715 47.619 0.00 0.00 0.00 3.02
939 941 1.602377 CCACCGTTTGACTTGGACTTC 59.398 52.381 0.00 0.00 0.00 3.01
940 942 1.675552 CCACCGTTTGACTTGGACTT 58.324 50.000 0.00 0.00 0.00 3.01
941 943 0.818040 GCCACCGTTTGACTTGGACT 60.818 55.000 0.00 0.00 0.00 3.85
942 944 1.098712 TGCCACCGTTTGACTTGGAC 61.099 55.000 0.00 0.00 0.00 4.02
943 945 1.098712 GTGCCACCGTTTGACTTGGA 61.099 55.000 0.00 0.00 0.00 3.53
944 946 1.358759 GTGCCACCGTTTGACTTGG 59.641 57.895 0.00 0.00 0.00 3.61
945 947 0.029300 CTGTGCCACCGTTTGACTTG 59.971 55.000 0.00 0.00 0.00 3.16
946 948 0.107410 TCTGTGCCACCGTTTGACTT 60.107 50.000 0.00 0.00 0.00 3.01
947 949 0.108585 ATCTGTGCCACCGTTTGACT 59.891 50.000 0.00 0.00 0.00 3.41
948 950 0.951558 AATCTGTGCCACCGTTTGAC 59.048 50.000 0.00 0.00 0.00 3.18
949 951 2.147958 GTAATCTGTGCCACCGTTTGA 58.852 47.619 0.00 0.00 0.00 2.69
950 952 1.876799 TGTAATCTGTGCCACCGTTTG 59.123 47.619 0.00 0.00 0.00 2.93
951 953 2.264005 TGTAATCTGTGCCACCGTTT 57.736 45.000 0.00 0.00 0.00 3.60
952 954 2.264005 TTGTAATCTGTGCCACCGTT 57.736 45.000 0.00 0.00 0.00 4.44
953 955 2.489938 ATTGTAATCTGTGCCACCGT 57.510 45.000 0.00 0.00 0.00 4.83
954 956 3.427503 GGAAATTGTAATCTGTGCCACCG 60.428 47.826 0.00 0.00 0.00 4.94
955 957 3.763897 AGGAAATTGTAATCTGTGCCACC 59.236 43.478 0.00 0.00 0.00 4.61
956 958 4.142381 GGAGGAAATTGTAATCTGTGCCAC 60.142 45.833 0.00 0.00 0.00 5.01
957 959 4.016444 GGAGGAAATTGTAATCTGTGCCA 58.984 43.478 0.00 0.00 0.00 4.92
958 960 3.381590 GGGAGGAAATTGTAATCTGTGCC 59.618 47.826 0.00 0.00 0.00 5.01
959 961 3.381590 GGGGAGGAAATTGTAATCTGTGC 59.618 47.826 0.00 0.00 0.00 4.57
960 962 3.954258 GGGGGAGGAAATTGTAATCTGTG 59.046 47.826 0.00 0.00 0.00 3.66
961 963 4.251103 GGGGGAGGAAATTGTAATCTGT 57.749 45.455 0.00 0.00 0.00 3.41
995 997 3.726557 ACTGCAGAATCCTCATTTCCA 57.273 42.857 23.35 0.00 0.00 3.53
997 999 4.171754 GCAAACTGCAGAATCCTCATTTC 58.828 43.478 23.35 0.00 44.26 2.17
1041 1043 3.111098 GCGGTTTGCATCAGATGAAATC 58.889 45.455 15.12 8.96 43.96 2.17
1042 1044 3.155093 GCGGTTTGCATCAGATGAAAT 57.845 42.857 15.12 0.00 45.45 2.17
1062 1064 1.459592 CGAGACAAACACGGCTTAAGG 59.540 52.381 4.29 0.00 0.00 2.69
1088 1090 8.210265 AGGCATCAAAATTTTCAAAGGTAGAAA 58.790 29.630 0.00 0.00 33.48 2.52
1111 1113 3.475566 TGCATTACTGACTGGATAGGC 57.524 47.619 0.00 0.00 0.00 3.93
1113 1115 7.712639 ACTTACATTGCATTACTGACTGGATAG 59.287 37.037 0.00 0.00 0.00 2.08
1122 1124 8.702438 CCAAGAAAAACTTACATTGCATTACTG 58.298 33.333 0.00 0.00 37.03 2.74
1248 1250 3.099905 TCCAAGATCCTTCATGTCGACT 58.900 45.455 17.92 0.00 0.00 4.18
1360 1362 3.995199 TGGCAAGATACGGATTGATCTC 58.005 45.455 0.00 0.00 31.02 2.75
1386 1388 5.258456 CCATTCTTGGGTTCATCTTGATG 57.742 43.478 4.35 4.35 39.56 3.07
1403 1405 9.241317 CATAAGCAAATATTTCAGACACCATTC 57.759 33.333 0.00 0.00 0.00 2.67
1440 1442 2.702261 TCCACAGTAATAACCGCCAAC 58.298 47.619 0.00 0.00 0.00 3.77
1472 1474 0.774491 AGCACCTAAAGGAACCCCCA 60.774 55.000 2.23 0.00 38.94 4.96
1498 1500 5.964288 AGAGATCCTCAGGTTAGATAGCTT 58.036 41.667 0.00 0.00 32.06 3.74
1528 1530 5.437289 TTGAGCAAGACAAACTTACCATG 57.563 39.130 0.00 0.00 37.03 3.66
1529 1531 7.067494 GGATATTGAGCAAGACAAACTTACCAT 59.933 37.037 0.00 0.00 37.03 3.55
1569 1571 1.002087 AGAGTCAAACCCTTGTAGCCG 59.998 52.381 0.00 0.00 33.94 5.52
1575 1577 2.023673 TGTTGCAGAGTCAAACCCTTG 58.976 47.619 0.00 0.00 0.00 3.61
1636 1638 1.338020 GCAAACCTCCTCAACCAACTG 59.662 52.381 0.00 0.00 0.00 3.16
1644 1646 1.841556 ACTCCCGCAAACCTCCTCA 60.842 57.895 0.00 0.00 0.00 3.86
1648 1650 1.966451 CACCACTCCCGCAAACCTC 60.966 63.158 0.00 0.00 0.00 3.85
1713 1715 3.633525 TCATGAATATTTGTGGCTGAGGC 59.366 43.478 0.00 0.00 37.82 4.70
1732 1734 6.952358 AGGAACACGGTATGGTATAGTATCAT 59.048 38.462 0.00 0.00 33.31 2.45
1743 1745 3.317149 TCGATCTTAGGAACACGGTATGG 59.683 47.826 0.00 0.00 0.00 2.74
1791 1793 2.105006 TTCTGCAGAACTGATCCAGC 57.895 50.000 25.16 0.00 34.37 4.85
1792 1794 3.008330 CCTTTCTGCAGAACTGATCCAG 58.992 50.000 28.46 19.64 37.52 3.86
1809 1811 0.264657 ACTTGCCCCTTGGTTCCTTT 59.735 50.000 0.00 0.00 0.00 3.11
1815 1817 0.032615 TGTTGAACTTGCCCCTTGGT 60.033 50.000 0.00 0.00 0.00 3.67
1836 1838 9.054922 TCACGCAATTCAGAATCATTCATAATA 57.945 29.630 0.00 0.00 0.00 0.98
1854 1856 0.957395 CCCTCAGCAACTCACGCAAT 60.957 55.000 0.00 0.00 0.00 3.56
1859 1861 2.102252 CCTATCTCCCTCAGCAACTCAC 59.898 54.545 0.00 0.00 0.00 3.51
1864 1866 2.111384 GTCACCTATCTCCCTCAGCAA 58.889 52.381 0.00 0.00 0.00 3.91
1872 1874 5.300792 CAGTTCTCTAAGGTCACCTATCTCC 59.699 48.000 0.00 0.00 31.13 3.71
1893 1895 2.616842 CAGTTCGGCAAGGTTTAACAGT 59.383 45.455 0.00 0.00 0.00 3.55
1968 1970 3.827722 CCCGCCCTTTGGATATTTAGAA 58.172 45.455 0.00 0.00 0.00 2.10
1969 1971 2.488347 GCCCGCCCTTTGGATATTTAGA 60.488 50.000 0.00 0.00 0.00 2.10
2136 2138 0.694771 TGGCTTGAGATGGCTGACTT 59.305 50.000 0.00 0.00 0.00 3.01
2137 2139 0.035630 GTGGCTTGAGATGGCTGACT 60.036 55.000 0.00 0.00 0.00 3.41
2142 2144 2.413142 GCCTGTGGCTTGAGATGGC 61.413 63.158 0.73 0.00 46.69 4.40
2202 2273 5.048083 TGGTGGAGCATTACTTGAATTGAAC 60.048 40.000 0.00 0.00 0.00 3.18
2207 2278 4.032960 TGTGGTGGAGCATTACTTGAAT 57.967 40.909 0.00 0.00 0.00 2.57
2280 2351 1.745653 GCATAAGGGTCCTGAGTTTGC 59.254 52.381 0.00 0.00 0.00 3.68
2311 2382 0.607489 CCACCTTTGAGTCTGGCCTG 60.607 60.000 3.32 2.92 0.00 4.85
2379 2450 6.321181 TGAAAGAGAAGCCTACACATGTTTTT 59.679 34.615 0.00 0.00 0.00 1.94
2385 2456 5.809001 TGAATGAAAGAGAAGCCTACACAT 58.191 37.500 0.00 0.00 0.00 3.21
2428 2499 9.261180 TGAAATAGACGATCTGAATAATTGACC 57.739 33.333 0.00 0.00 0.00 4.02
2430 2501 8.968242 CGTGAAATAGACGATCTGAATAATTGA 58.032 33.333 0.00 0.00 39.21 2.57
2546 2618 3.772387 TGCAAATTTCCATGTGTCCCTA 58.228 40.909 0.00 0.00 0.00 3.53
2582 2654 9.458727 AAGTCTCATTCTTGTTGAACATCATAT 57.541 29.630 0.00 0.00 37.52 1.78
2603 2675 5.568620 AGTTGATTGGTTCTGGTAAGTCT 57.431 39.130 0.00 0.00 0.00 3.24
2610 2682 4.559862 AGGACTAGTTGATTGGTTCTGG 57.440 45.455 0.00 0.00 0.00 3.86
2611 2683 6.531503 TCTAGGACTAGTTGATTGGTTCTG 57.468 41.667 0.00 0.00 34.84 3.02
2634 2706 3.393687 TCAGGGGCTTGTATACCATCTT 58.606 45.455 0.00 0.00 0.00 2.40
2636 2708 3.327757 TCATCAGGGGCTTGTATACCATC 59.672 47.826 0.00 0.00 0.00 3.51
2640 2712 3.838244 TGTCATCAGGGGCTTGTATAC 57.162 47.619 0.00 0.00 0.00 1.47
2644 2716 1.004044 CTCTTGTCATCAGGGGCTTGT 59.996 52.381 0.00 0.00 0.00 3.16
2688 2760 3.366679 CCAGGACATGCTTGCTTGTTAAG 60.367 47.826 13.89 7.85 0.00 1.85
2689 2761 2.557924 CCAGGACATGCTTGCTTGTTAA 59.442 45.455 13.89 0.00 0.00 2.01
2691 2763 0.963962 CCAGGACATGCTTGCTTGTT 59.036 50.000 13.89 0.00 0.00 2.83
2692 2764 0.178981 ACCAGGACATGCTTGCTTGT 60.179 50.000 12.82 12.82 0.00 3.16
2693 2765 0.242825 CACCAGGACATGCTTGCTTG 59.757 55.000 0.00 6.90 0.00 4.01
2694 2766 0.111061 TCACCAGGACATGCTTGCTT 59.889 50.000 0.00 0.00 0.00 3.91
2754 2832 3.507622 GGACCAGATCAACAGGAAAAAGG 59.492 47.826 0.00 0.00 0.00 3.11
2761 2839 1.065126 GGAAGGGACCAGATCAACAGG 60.065 57.143 0.00 0.00 0.00 4.00
2764 2842 0.256177 GGGGAAGGGACCAGATCAAC 59.744 60.000 0.00 0.00 0.00 3.18
2787 2865 4.292306 ACATCACCAAATTAGTCCCTCCTT 59.708 41.667 0.00 0.00 0.00 3.36
2788 2866 3.852578 ACATCACCAAATTAGTCCCTCCT 59.147 43.478 0.00 0.00 0.00 3.69
2794 2986 7.987458 TGGATAGAGAACATCACCAAATTAGTC 59.013 37.037 0.00 0.00 0.00 2.59
3052 3345 6.269315 ACGTCAAAACATTTGTATTGCTCAA 58.731 32.000 3.06 0.00 0.00 3.02
3074 3367 7.473027 AGTGGATCCGTTTAACATTTATACG 57.527 36.000 7.39 2.97 0.00 3.06
3213 3506 2.480845 ACTAAACAGGAGACACAACGC 58.519 47.619 0.00 0.00 0.00 4.84
3274 3567 9.699703 GGTTGCTTTGTAAAGTGGATTATTTTA 57.300 29.630 6.27 0.00 38.28 1.52
3275 3568 7.659799 GGGTTGCTTTGTAAAGTGGATTATTTT 59.340 33.333 6.27 0.00 38.28 1.82
3276 3569 7.158697 GGGTTGCTTTGTAAAGTGGATTATTT 58.841 34.615 6.27 0.00 38.28 1.40
3277 3570 6.295632 GGGGTTGCTTTGTAAAGTGGATTATT 60.296 38.462 6.27 0.00 38.28 1.40
3278 3571 5.186992 GGGGTTGCTTTGTAAAGTGGATTAT 59.813 40.000 6.27 0.00 38.28 1.28
3279 3572 4.525100 GGGGTTGCTTTGTAAAGTGGATTA 59.475 41.667 6.27 0.00 38.28 1.75
3280 3573 3.323691 GGGGTTGCTTTGTAAAGTGGATT 59.676 43.478 6.27 0.00 38.28 3.01
3281 3574 2.897326 GGGGTTGCTTTGTAAAGTGGAT 59.103 45.455 6.27 0.00 38.28 3.41
3282 3575 2.312390 GGGGTTGCTTTGTAAAGTGGA 58.688 47.619 6.27 0.00 38.28 4.02
3283 3576 1.000717 CGGGGTTGCTTTGTAAAGTGG 60.001 52.381 6.27 0.00 38.28 4.00
3284 3577 1.601914 GCGGGGTTGCTTTGTAAAGTG 60.602 52.381 6.27 0.00 38.28 3.16
3285 3578 0.671796 GCGGGGTTGCTTTGTAAAGT 59.328 50.000 6.27 0.00 38.28 2.66
3286 3579 0.671251 TGCGGGGTTGCTTTGTAAAG 59.329 50.000 0.05 0.05 39.03 1.85
3287 3580 1.112113 TTGCGGGGTTGCTTTGTAAA 58.888 45.000 0.00 0.00 35.36 2.01
3288 3581 1.271102 GATTGCGGGGTTGCTTTGTAA 59.729 47.619 0.00 0.00 35.36 2.41
3289 3582 0.885196 GATTGCGGGGTTGCTTTGTA 59.115 50.000 0.00 0.00 35.36 2.41
3290 3583 1.112315 TGATTGCGGGGTTGCTTTGT 61.112 50.000 0.00 0.00 35.36 2.83
3291 3584 0.033228 TTGATTGCGGGGTTGCTTTG 59.967 50.000 0.00 0.00 35.36 2.77
3292 3585 0.318120 CTTGATTGCGGGGTTGCTTT 59.682 50.000 0.00 0.00 35.36 3.51
3293 3586 0.539438 TCTTGATTGCGGGGTTGCTT 60.539 50.000 0.00 0.00 35.36 3.91
3294 3587 0.962356 CTCTTGATTGCGGGGTTGCT 60.962 55.000 0.00 0.00 35.36 3.91
3295 3588 0.960364 TCTCTTGATTGCGGGGTTGC 60.960 55.000 0.00 0.00 0.00 4.17
3296 3589 1.089920 CTCTCTTGATTGCGGGGTTG 58.910 55.000 0.00 0.00 0.00 3.77
3297 3590 0.693049 ACTCTCTTGATTGCGGGGTT 59.307 50.000 0.00 0.00 0.00 4.11
3298 3591 0.036010 CACTCTCTTGATTGCGGGGT 60.036 55.000 0.00 0.00 0.00 4.95
3299 3592 0.745845 CCACTCTCTTGATTGCGGGG 60.746 60.000 0.00 0.00 0.00 5.73
3300 3593 0.250234 TCCACTCTCTTGATTGCGGG 59.750 55.000 0.00 0.00 0.00 6.13
3301 3594 2.322355 ATCCACTCTCTTGATTGCGG 57.678 50.000 0.00 0.00 0.00 5.69
3302 3595 4.033358 GTGTAATCCACTCTCTTGATTGCG 59.967 45.833 0.00 0.00 41.11 4.85
3303 3596 5.476752 GTGTAATCCACTCTCTTGATTGC 57.523 43.478 0.00 0.00 41.11 3.56
3312 3605 8.077666 TATGTCTCCATCAGTGTAATCCACTCT 61.078 40.741 0.00 0.00 41.27 3.24
3313 3606 6.040955 TATGTCTCCATCAGTGTAATCCACTC 59.959 42.308 0.00 0.00 41.27 3.51
3314 3607 5.899547 TATGTCTCCATCAGTGTAATCCACT 59.100 40.000 0.00 0.00 42.64 4.00
3315 3608 4.471904 TGTCTCCATCAGTGTAATCCAC 57.528 45.455 0.00 0.00 44.89 4.02
3316 3609 6.806668 TTATGTCTCCATCAGTGTAATCCA 57.193 37.500 0.00 0.00 32.29 3.41
3317 3610 8.682936 ATTTTATGTCTCCATCAGTGTAATCC 57.317 34.615 0.00 0.00 32.29 3.01
3321 3614 9.778741 GGATTATTTTATGTCTCCATCAGTGTA 57.221 33.333 0.00 0.00 32.29 2.90
3322 3615 8.274322 TGGATTATTTTATGTCTCCATCAGTGT 58.726 33.333 0.00 0.00 32.29 3.55
3323 3616 8.562892 GTGGATTATTTTATGTCTCCATCAGTG 58.437 37.037 0.00 0.00 35.41 3.66
3324 3617 8.497745 AGTGGATTATTTTATGTCTCCATCAGT 58.502 33.333 0.00 0.00 35.41 3.41
3325 3618 8.915057 AGTGGATTATTTTATGTCTCCATCAG 57.085 34.615 0.00 0.00 35.41 2.90
3326 3619 9.699410 AAAGTGGATTATTTTATGTCTCCATCA 57.301 29.630 0.00 0.00 35.41 3.07
3329 3622 9.967451 TGTAAAGTGGATTATTTTATGTCTCCA 57.033 29.630 0.00 0.00 0.00 3.86
3424 3717 3.896888 CCCCATGTATTTGCACATATGGT 59.103 43.478 7.80 0.00 37.02 3.55
3452 3745 8.573035 GGAACATGGTGACTAAAATTTGAACTA 58.427 33.333 0.00 0.00 0.00 2.24
3455 3748 7.353414 TGGAACATGGTGACTAAAATTTGAA 57.647 32.000 0.00 0.00 0.00 2.69
3506 3799 7.633361 AGAATGCAAATATCATTTTGATCGC 57.367 32.000 0.00 0.00 38.26 4.58
3526 3819 7.855784 AATAACCCTGAAAAAGTGGAAGAAT 57.144 32.000 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.