AutoCloner

Multiple sequence alignment - TraesCS2A01G519800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G519800	chr2A	100.000	3065	0	0	1	3065	742773507	742770443	0.000000e+00	5661
1	TraesCS2A01G519800	chr2A	79.669	605	110	12	1	597	86289004	86288405	1.020000e-114	424
2	TraesCS2A01G519800	chr2B	88.613	2775	204	45	1	2724	744858190	744855477	0.000000e+00	3271
3	TraesCS2A01G519800	chr2B	85.334	2066	184	52	655	2671	744826597	744824602	0.000000e+00	2026
4	TraesCS2A01G519800	chr2B	89.593	1278	109	10	727	1996	744483058	744481797	0.000000e+00	1602
5	TraesCS2A01G519800	chr2B	91.193	1056	76	9	1	1043	744839900	744838849	0.000000e+00	1419
6	TraesCS2A01G519800	chr2B	84.816	1416	146	33	896	2255	745034124	745035526	0.000000e+00	1360
7	TraesCS2A01G519800	chr2B	89.681	1066	89	16	1271	2320	744553587	744552527	0.000000e+00	1339
8	TraesCS2A01G519800	chr2B	88.284	606	49	13	676	1273	744554637	744554046	0.000000e+00	706
9	TraesCS2A01G519800	chr2B	88.662	441	28	13	2291	2729	744552522	744552102	4.530000e-143	518
10	TraesCS2A01G519800	chr2B	90.934	364	33	0	2702	3065	744552056	744551693	9.880000e-135	490
11	TraesCS2A01G519800	chr2B	90.571	350	33	0	2716	3065	744838856	744838507	5.990000e-127	464
12	TraesCS2A01G519800	chr2B	89.532	363	38	0	2703	3065	744855426	744855064	7.740000e-126	460
13	TraesCS2A01G519800	chr2B	81.028	253	23	8	2010	2242	744480719	744480472	8.730000e-41	178
14	TraesCS2A01G519800	chr2D	92.732	1775	109	10	731	2493	609959096	609957330	0.000000e+00	2545
15	TraesCS2A01G519800	chr2D	85.649	878	71	29	1869	2720	609913377	609912529	0.000000e+00	872
16	TraesCS2A01G519800	chr2D	84.393	519	76	4	83	597	552066110	552066627	3.530000e-139	505
17	TraesCS2A01G519800	chr2D	91.216	296	24	1	2770	3065	609957309	609957016	4.760000e-108	401
18	TraesCS2A01G519800	chr2D	86.885	366	36	4	2702	3065	609912474	609912119	1.710000e-107	399
19	TraesCS2A01G519800	chr2D	88.550	131	11	3	1001	1129	609893274	609893146	4.090000e-34	156
20	TraesCS2A01G519800	chr6D	82.592	517	86	3	84	597	327608919	327608404	1.300000e-123	453
21	TraesCS2A01G519800	chr1D	81.766	521	90	4	84	600	307154741	307154222	6.070000e-117	431
22	TraesCS2A01G519800	chr7D	75.974	924	167	30	1182	2064	574290658	574289749	2.820000e-115	425
23	TraesCS2A01G519800	chr3A	81.274	518	92	4	84	597	79379396	79379912	6.110000e-112	414
24	TraesCS2A01G519800	chr7A	81.118	519	91	6	84	597	20429793	20430309	2.840000e-110	409
25	TraesCS2A01G519800	chr7A	75.297	927	171	32	1182	2064	663604605	663603693	1.030000e-104	390
26	TraesCS2A01G519800	chr5A	80.925	519	92	6	84	597	632193137	632193653	1.320000e-108	403

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G519800	chr2A	742770443	742773507	3064	True	5661.00	5661	100.00000	1	3065	1	chr2A.!!$R2	3064
1	TraesCS2A01G519800	chr2A	86288405	86289004	599	True	424.00	424	79.66900	1	597	1	chr2A.!!$R1	596
2	TraesCS2A01G519800	chr2B	744824602	744826597	1995	True	2026.00	2026	85.33400	655	2671	1	chr2B.!!$R1	2016
3	TraesCS2A01G519800	chr2B	744855064	744858190	3126	True	1865.50	3271	89.07250	1	3065	2	chr2B.!!$R5	3064
4	TraesCS2A01G519800	chr2B	745034124	745035526	1402	False	1360.00	1360	84.81600	896	2255	1	chr2B.!!$F1	1359
5	TraesCS2A01G519800	chr2B	744838507	744839900	1393	True	941.50	1419	90.88200	1	3065	2	chr2B.!!$R4	3064
6	TraesCS2A01G519800	chr2B	744480472	744483058	2586	True	890.00	1602	85.31050	727	2242	2	chr2B.!!$R2	1515
7	TraesCS2A01G519800	chr2B	744551693	744554637	2944	True	763.25	1339	89.39025	676	3065	4	chr2B.!!$R3	2389
8	TraesCS2A01G519800	chr2D	609957016	609959096	2080	True	1473.00	2545	91.97400	731	3065	2	chr2D.!!$R3	2334
9	TraesCS2A01G519800	chr2D	609912119	609913377	1258	True	635.50	872	86.26700	1869	3065	2	chr2D.!!$R2	1196
10	TraesCS2A01G519800	chr2D	552066110	552066627	517	False	505.00	505	84.39300	83	597	1	chr2D.!!$F1	514
11	TraesCS2A01G519800	chr6D	327608404	327608919	515	True	453.00	453	82.59200	84	597	1	chr6D.!!$R1	513
12	TraesCS2A01G519800	chr1D	307154222	307154741	519	True	431.00	431	81.76600	84	600	1	chr1D.!!$R1	516
13	TraesCS2A01G519800	chr7D	574289749	574290658	909	True	425.00	425	75.97400	1182	2064	1	chr7D.!!$R1	882
14	TraesCS2A01G519800	chr3A	79379396	79379912	516	False	414.00	414	81.27400	84	597	1	chr3A.!!$F1	513
15	TraesCS2A01G519800	chr7A	20429793	20430309	516	False	409.00	409	81.11800	84	597	1	chr7A.!!$F1	513
16	TraesCS2A01G519800	chr7A	663603693	663604605	912	True	390.00	390	75.29700	1182	2064	1	chr7A.!!$R1	882
17	TraesCS2A01G519800	chr5A	632193137	632193653	516	False	403.00	403	80.92500	84	597	1	chr5A.!!$F1	513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
105	110	1.073923	CAGTGTAAGACCAAAGGCCCT	59.926	52.381	0.00	0.00	0.0	5.19	F
1013	1052	0.248458	ATTAAAATGAAGGCGCGGCG	60.248	50.000	27.74	19.62	0.0	6.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1420	1962	0.249398	ATGACGTACAAGGCCTGACC	59.751	55.0	5.69	0.0	39.61	4.02	R
2799	4620	0.453793	CGTTGGCAAGGTTTGTGTCA	59.546	50.0	11.60	0.0	0.00	3.58	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	4.618693	GCTATCTAGCGGACCTGGAAATAC	60.619	50.000	0.00	0.00	39.82	1.89
31	32	4.142790	TCTAGCGGACCTGGAAATACTAG	58.857	47.826	0.00	5.10	0.00	2.57
37	38	3.898741	GGACCTGGAAATACTAGAGGAGG	59.101	52.174	0.00	0.00	0.00	4.30
42	43	4.620723	TGGAAATACTAGAGGAGGAGCAA	58.379	43.478	0.00	0.00	0.00	3.91
60	61	3.997021	AGCAACAAGGAATGTCTAGAACG	59.003	43.478	0.00	0.00	42.99	3.95
94	99	2.371841	ACAACCATCAGGCAGTGTAAGA	59.628	45.455	0.00	0.00	39.06	2.10
105	110	1.073923	CAGTGTAAGACCAAAGGCCCT	59.926	52.381	0.00	0.00	0.00	5.19
177	182	2.680352	GAGAGGGGCGACAGTGGA	60.680	66.667	0.00	0.00	0.00	4.02
216	221	4.340617	CAAGGCAATTACTTGGGGAGTTA	58.659	43.478	12.09	0.00	41.16	2.24
248	253	3.359950	GTTGAAGGGATGCAGGATTCTT	58.640	45.455	0.00	0.00	0.00	2.52
298	303	1.079503	CTTTAGCACTTGCCGAGGAC	58.920	55.000	0.00	0.00	43.38	3.85
310	315	1.337823	GCCGAGGACTTAGCTGTTCAA	60.338	52.381	0.00	0.00	0.00	2.69
319	324	9.914131	GAGGACTTAGCTGTTCAAAATTTTATT	57.086	29.630	2.44	0.00	0.00	1.40
378	389	1.611977	GCAACAACAAGGGTCCTTACC	59.388	52.381	1.46	0.00	45.97	2.85
398	409	4.478843	CCGCATGGTTATCTCAGAAATG	57.521	45.455	0.00	0.00	0.00	2.32
444	455	1.880027	GCAACATCGTCTTTGAAGGGT	59.120	47.619	0.00	0.00	0.00	4.34
538	549	4.853007	CTTGATCATCCCCATAATCCTCC	58.147	47.826	0.00	0.00	0.00	4.30
574	585	5.108385	ACTGTGGTTTTCGATGAATGAAC	57.892	39.130	0.00	0.00	0.00	3.18
580	591	6.475402	GTGGTTTTCGATGAATGAACAAAGTT	59.525	34.615	0.00	0.00	0.00	2.66
834	860	3.181461	CGATCAGCCCAAGGAATAAGTCT	60.181	47.826	0.00	0.00	0.00	3.24
852	878	4.494811	TGTCGCAGGCATTACTCG	57.505	55.556	0.00	0.00	36.97	4.18
864	896	5.461737	CAGGCATTACTCGATCTTTCTCTTC	59.538	44.000	0.00	0.00	0.00	2.87
865	897	5.127845	AGGCATTACTCGATCTTTCTCTTCA	59.872	40.000	0.00	0.00	0.00	3.02
879	911	1.608590	CTCTTCACCATTTGGCGTGTT	59.391	47.619	0.00	0.00	39.32	3.32
990	1028	1.346722	CTCCGTTTTGTAGGAGTGGGT	59.653	52.381	3.49	0.00	46.68	4.51
1013	1052	0.248458	ATTAAAATGAAGGCGCGGCG	60.248	50.000	27.74	19.62	0.00	6.46
1038	1077	0.612744	TGAATGTGGTGATGCGGAGA	59.387	50.000	0.00	0.00	0.00	3.71
1042	1081	1.264045	TGTGGTGATGCGGAGATCCA	61.264	55.000	0.00	0.00	35.14	3.41
1452	2000	1.447838	CGTCATGGACAGGTTCCCG	60.448	63.158	0.00	0.00	45.17	5.14
1602	2155	3.023949	GCTGGGTGATGGCTCGACT	62.024	63.158	0.00	0.00	0.00	4.18
1664	2223	0.602905	GACACCGTTAGCTGCACCTT	60.603	55.000	1.02	0.00	0.00	3.50
1809	2380	2.677875	CTTGGCAGGGCTCCCAAC	60.678	66.667	7.82	0.00	36.25	3.77
1828	2399	1.962807	ACTTGCTGCATAACTGGCAAA	59.037	42.857	1.84	0.00	42.76	3.68
1842	2413	2.967599	GGCAAATCCTTGACAATCCC	57.032	50.000	0.00	0.00	40.67	3.85
1863	2434	2.157738	GATGGATGGGTGCAGATAAGC	58.842	52.381	0.00	0.00	0.00	3.09
1864	2435	0.183492	TGGATGGGTGCAGATAAGCC	59.817	55.000	0.00	0.00	35.69	4.35
2007	3644	2.959030	CCACGGAGGATCATCTGAACTA	59.041	50.000	22.42	0.00	41.22	2.24
2090	3728	4.466015	CACCAAGGCCATGTTAGGTTAATT	59.534	41.667	5.01	0.00	0.00	1.40
2093	3731	5.422012	CCAAGGCCATGTTAGGTTAATTCTT	59.578	40.000	5.01	0.00	0.00	2.52
2096	3735	6.252995	AGGCCATGTTAGGTTAATTCTTTCA	58.747	36.000	5.01	0.00	0.00	2.69
2151	3808	4.136796	CCACTCAACACCTTTCAATCTCA	58.863	43.478	0.00	0.00	0.00	3.27
2242	3908	2.437359	GCGGCAGCCAGATCAACT	60.437	61.111	13.30	0.00	37.42	3.16
2327	4062	0.529992	GTAGGTCGCATCGGGGAAAG	60.530	60.000	0.00	0.00	37.76	2.62
2395	4133	7.111466	ACCCCATTTATGATTGTTGGAAAATG	58.889	34.615	0.00	0.00	35.24	2.32
2459	4199	7.753132	TCGTTCCACAATATTTCTTATGCAAAC	59.247	33.333	0.00	0.00	0.00	2.93
2495	4235	6.369059	AGTATGAGAAATCAAAATGGCTCG	57.631	37.500	0.00	0.00	0.00	5.03
2536	4276	8.525876	CATCAAAATTAACACATCGTTGCATAG	58.474	33.333	0.00	0.00	38.63	2.23
2537	4277	7.811653	TCAAAATTAACACATCGTTGCATAGA	58.188	30.769	0.00	0.00	38.63	1.98
2538	4278	7.748683	TCAAAATTAACACATCGTTGCATAGAC	59.251	33.333	0.00	0.00	38.63	2.59
2539	4279	5.734855	ATTAACACATCGTTGCATAGACC	57.265	39.130	0.00	0.00	38.63	3.85
2540	4280	2.760634	ACACATCGTTGCATAGACCA	57.239	45.000	0.00	0.00	0.00	4.02
2541	4281	3.266510	ACACATCGTTGCATAGACCAT	57.733	42.857	0.00	0.00	0.00	3.55
2542	4282	4.400529	ACACATCGTTGCATAGACCATA	57.599	40.909	0.00	0.00	0.00	2.74
2642	4387	5.618056	ATGCAATTAAGTCATATCGCAGG	57.382	39.130	0.00	0.00	0.00	4.85
2655	4400	5.241064	TCATATCGCAGGTAGGACTCTAAAC	59.759	44.000	0.00	0.00	0.00	2.01
2688	4433	5.263599	AGGATTGCAATTGAGTCCATTGTA	58.736	37.500	14.33	10.41	0.00	2.41
2696	4441	9.407380	TGCAATTGAGTCCATTGTAGTAAATAT	57.593	29.630	10.34	0.00	0.00	1.28
2712	4531	9.136952	GTAGTAAATATCACCCTATAGCGTTTG	57.863	37.037	0.00	0.00	0.00	2.93
2785	4606	1.401199	TCATATCGCACGTAACCGACA	59.599	47.619	7.19	0.00	36.18	4.35
2819	4640	0.248866	GACACAAACCTTGCCAACGG	60.249	55.000	0.00	0.00	0.00	4.44
2837	4658	2.770904	TGGACCCGGGGATAAGGC	60.771	66.667	27.92	0.00	0.00	4.35
2886	4707	9.638239	GCACATTCATAAGAATTTCCTTTGTTA	57.362	29.630	0.00	0.00	42.46	2.41
2903	4724	6.128742	CCTTTGTTAATCTGCAATTTCTGTGC	60.129	38.462	0.00	0.00	42.55	4.57
2924	4745	3.243704	GCTCGAGATCCACAAGATAGCTT	60.244	47.826	18.75	0.00	34.42	3.74
2939	4760	1.228245	GCTTGCACACCCCAGAGAA	60.228	57.895	0.00	0.00	0.00	2.87
2942	4763	2.242043	CTTGCACACCCCAGAGAAATT	58.758	47.619	0.00	0.00	0.00	1.82
2989	4810	4.787551	TGCTTCCTCTTTAACTTGACCAA	58.212	39.130	0.00	0.00	0.00	3.67
3031	4852	2.350863	AGATCTGTCCAGGGGTTCTT	57.649	50.000	0.00	0.00	0.00	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	2.461695	TCCTTGTTGCTCCTCCTCTAG	58.538	52.381	0.00	0.00	0.00	2.43
31	32	2.290577	ACATTCCTTGTTGCTCCTCCTC	60.291	50.000	0.00	0.00	33.74	3.71
37	38	4.092091	CGTTCTAGACATTCCTTGTTGCTC	59.908	45.833	0.00	0.00	39.18	4.26
42	43	4.866508	TGTCGTTCTAGACATTCCTTGT	57.133	40.909	0.00	0.00	45.18	3.16
60	61	2.999507	TGGTTGTGTTGTGTGTTGTC	57.000	45.000	0.00	0.00	0.00	3.18
133	138	1.472552	CGTTTGGATACTCCCGCATCA	60.473	52.381	0.00	0.00	35.03	3.07
177	182	0.179148	TTGCTCGTCGCGACATACAT	60.179	50.000	35.71	0.00	43.27	2.29
216	221	1.133199	TCCCTTCAACCACCAATGCTT	60.133	47.619	0.00	0.00	0.00	3.91
248	253	0.810648	GCCATGCATTCAAGAACCGA	59.189	50.000	0.00	0.00	0.00	4.69
271	276	1.882623	GCAAGTGCTAAAGCTTCCTGT	59.117	47.619	0.00	0.00	42.66	4.00
273	278	1.539157	GGCAAGTGCTAAAGCTTCCT	58.461	50.000	0.00	0.00	42.66	3.36
310	315	9.491675	TTTGCATCAGATGTCACAATAAAATTT	57.508	25.926	12.18	0.00	0.00	1.82
319	324	2.506444	TGCTTTGCATCAGATGTCACA	58.494	42.857	12.18	0.00	31.71	3.58
323	328	2.230508	CCACTTGCTTTGCATCAGATGT	59.769	45.455	12.18	0.00	38.76	3.06
378	389	5.739752	TTCATTTCTGAGATAACCATGCG	57.260	39.130	0.00	0.00	31.68	4.73
398	409	4.074970	TGAAGCCCAAGACTCTTGATTTC	58.925	43.478	18.82	16.87	0.00	2.17
444	455	1.445410	CATCTTCGTTCGACCGGCA	60.445	57.895	0.00	0.00	0.00	5.69
708	724	5.304686	TGCCCTTTCTTCTCTTCTTGTTA	57.695	39.130	0.00	0.00	0.00	2.41
834	860	0.245266	TCGAGTAATGCCTGCGACAA	59.755	50.000	0.00	0.00	0.00	3.18
852	878	4.991472	GCCAAATGGTGAAGAGAAAGATC	58.009	43.478	0.71	0.00	37.57	2.75
865	897	3.467374	AATGAAAACACGCCAAATGGT	57.533	38.095	0.71	0.00	37.57	3.55
990	1028	3.242936	GCCGCGCCTTCATTTTAATTCTA	60.243	43.478	0.00	0.00	0.00	2.10
1013	1052	2.414559	CGCATCACCACATTCAAGAACC	60.415	50.000	0.00	0.00	0.00	3.62
1038	1077	3.336568	AGGCTGCCACTGCTGGAT	61.337	61.111	22.65	0.00	40.55	3.41
1042	1081	2.348998	GTACAGGCTGCCACTGCT	59.651	61.111	22.65	5.06	39.55	4.24
1142	1184	2.354773	GCGGCGTATTCTCCTCCG	60.355	66.667	9.37	0.00	42.68	4.63
1179	1224	4.467084	GGCGGTGGCATCTTCGGA	62.467	66.667	0.00	0.00	42.47	4.55
1242	1305	1.463444	CGTCCGTAGAAGGGCAAAAAG	59.537	52.381	0.00	0.00	0.00	2.27
1420	1962	0.249398	ATGACGTACAAGGCCTGACC	59.751	55.000	5.69	0.00	39.61	4.02
1452	2000	0.899717	TGAAAGCATTGTGGGGAGCC	60.900	55.000	0.00	0.00	0.00	4.70
1766	2334	2.126346	GGTCCAATGCGCACAAGC	60.126	61.111	14.90	4.22	37.71	4.01
1809	2380	2.728690	TTTGCCAGTTATGCAGCAAG	57.271	45.000	0.00	0.00	45.18	4.01
1828	2399	2.126882	TCCATCGGGATTGTCAAGGAT	58.873	47.619	0.00	0.00	38.64	3.24
1842	2413	2.420642	CTTATCTGCACCCATCCATCG	58.579	52.381	0.00	0.00	0.00	3.84
1863	2434	0.460284	CAAGGTACAGCAGGCTACGG	60.460	60.000	0.00	0.00	0.00	4.02
1864	2435	0.460284	CCAAGGTACAGCAGGCTACG	60.460	60.000	0.00	0.00	0.00	3.51
1971	2545	2.040359	TGGACCACCTCCACACCA	60.040	61.111	0.00	0.00	44.99	4.17
2007	3644	4.660168	AGGACTTGTGCTTGATCATTTCT	58.340	39.130	0.00	0.00	0.00	2.52
2151	3808	2.235155	GGGTGTTTGGTTCAGGTTTGTT	59.765	45.455	0.00	0.00	0.00	2.83
2188	3847	3.781341	TGTTGTCAGCGAACGTATTTC	57.219	42.857	0.00	0.00	0.00	2.17
2242	3908	7.908827	TTGATTAAGCGTAAGTTACATCCAA	57.091	32.000	13.33	2.44	41.68	3.53
2327	4062	2.653726	TGGTTGGATGCACATGATACC	58.346	47.619	0.00	0.00	0.00	2.73
2484	4224	6.589523	TGAATTTTATGGTTCGAGCCATTTTG	59.410	34.615	34.50	0.00	46.33	2.44
2522	4262	4.620982	TCTATGGTCTATGCAACGATGTG	58.379	43.478	0.00	0.00	0.00	3.21
2536	4276	4.456662	TCTTCCTAGGTCCTCTATGGTC	57.543	50.000	9.08	0.00	37.07	4.02
2537	4277	4.901785	TTCTTCCTAGGTCCTCTATGGT	57.098	45.455	9.08	0.00	37.07	3.55
2538	4278	6.561519	TTTTTCTTCCTAGGTCCTCTATGG	57.438	41.667	9.08	0.00	37.10	2.74
2642	4387	6.183360	CCTCTTGTATGGGTTTAGAGTCCTAC	60.183	46.154	0.00	0.00	32.39	3.18
2655	4400	4.646040	TCAATTGCAATCCTCTTGTATGGG	59.354	41.667	13.38	0.00	0.00	4.00
2688	4433	7.015877	TCCAAACGCTATAGGGTGATATTTACT	59.984	37.037	21.82	1.53	41.23	2.24
2696	4441	2.693591	CTCTCCAAACGCTATAGGGTGA	59.306	50.000	21.82	14.01	41.23	4.02
2698	4443	2.040178	CCTCTCCAAACGCTATAGGGT	58.960	52.381	16.22	16.22	43.39	4.34
2712	4531	2.494530	CCTAGCAGCGGACCTCTCC	61.495	68.421	0.00	0.00	0.00	3.71
2785	4606	6.071391	AGGTTTGTGTCAAAGACAATGAACTT	60.071	34.615	0.82	1.94	44.49	2.66
2799	4620	0.453793	CGTTGGCAAGGTTTGTGTCA	59.546	50.000	11.60	0.00	0.00	3.58
2819	4640	3.116137	GCCTTATCCCCGGGTCCAC	62.116	68.421	21.85	0.00	0.00	4.02
2837	4658	1.180029	CTTCAACCTCCATGCAAGGG	58.820	55.000	8.36	4.65	40.85	3.95
2886	4707	3.076621	TCGAGCACAGAAATTGCAGATT	58.923	40.909	0.00	0.00	42.83	2.40
2903	4724	4.297510	CAAGCTATCTTGTGGATCTCGAG	58.702	47.826	5.93	5.93	43.55	4.04
2924	4745	1.619654	CAATTTCTCTGGGGTGTGCA	58.380	50.000	0.00	0.00	0.00	4.57
2939	4760	2.524306	TGATTTCAACCTCCGCCAATT	58.476	42.857	0.00	0.00	0.00	2.32
2942	4763	1.988293	TTTGATTTCAACCTCCGCCA	58.012	45.000	0.00	0.00	35.28	5.69
2981	4802	6.814506	ATCTTTCTTCATCAGTTGGTCAAG	57.185	37.500	0.00	0.00	0.00	3.02
2989	4810	4.660168	AGTGCCAATCTTTCTTCATCAGT	58.340	39.130	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.