Multiple sequence alignment - TraesCS2A01G519600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G519600 | chr2A | 100.000 | 7546 | 0 | 0 | 1 | 7546 | 742726950 | 742719405 | 0.000000e+00 | 13935.0 |
1 | TraesCS2A01G519600 | chr2A | 89.600 | 250 | 25 | 1 | 4232 | 4481 | 549697318 | 549697070 | 4.390000e-82 | 316.0 |
2 | TraesCS2A01G519600 | chr2D | 95.664 | 5327 | 162 | 29 | 1553 | 6836 | 609780450 | 609775150 | 0.000000e+00 | 8493.0 |
3 | TraesCS2A01G519600 | chr2D | 84.153 | 1546 | 123 | 59 | 22 | 1507 | 609781946 | 609780463 | 0.000000e+00 | 1386.0 |
4 | TraesCS2A01G519600 | chr2D | 93.363 | 678 | 19 | 11 | 6892 | 7546 | 609775122 | 609774448 | 0.000000e+00 | 979.0 |
5 | TraesCS2A01G519600 | chr2D | 90.283 | 247 | 21 | 3 | 4232 | 4477 | 332086858 | 332086614 | 3.400000e-83 | 320.0 |
6 | TraesCS2A01G519600 | chr2D | 89.328 | 253 | 25 | 2 | 4226 | 4478 | 513258599 | 513258849 | 4.390000e-82 | 316.0 |
7 | TraesCS2A01G519600 | chr2B | 95.800 | 3143 | 92 | 15 | 1553 | 4676 | 744172126 | 744169005 | 0.000000e+00 | 5036.0 |
8 | TraesCS2A01G519600 | chr2B | 95.208 | 2191 | 74 | 12 | 4672 | 6836 | 744168758 | 744166573 | 0.000000e+00 | 3435.0 |
9 | TraesCS2A01G519600 | chr2B | 93.431 | 685 | 13 | 11 | 6891 | 7546 | 744166546 | 744165865 | 0.000000e+00 | 987.0 |
10 | TraesCS2A01G519600 | chr2B | 90.345 | 725 | 42 | 14 | 795 | 1507 | 744172847 | 744172139 | 0.000000e+00 | 926.0 |
11 | TraesCS2A01G519600 | chr2B | 87.238 | 525 | 31 | 14 | 240 | 755 | 744173348 | 744172851 | 3.950000e-157 | 566.0 |
12 | TraesCS2A01G519600 | chr2B | 94.175 | 103 | 1 | 3 | 69 | 167 | 744173697 | 744173596 | 1.310000e-32 | 152.0 |
13 | TraesCS2A01G519600 | chr6B | 90.688 | 247 | 22 | 1 | 4232 | 4478 | 87994328 | 87994083 | 2.030000e-85 | 327.0 |
14 | TraesCS2A01G519600 | chr6B | 84.239 | 184 | 20 | 3 | 583 | 765 | 525982445 | 525982270 | 3.620000e-38 | 171.0 |
15 | TraesCS2A01G519600 | chr6B | 98.000 | 50 | 0 | 1 | 6842 | 6891 | 75029843 | 75029795 | 1.350000e-12 | 86.1 |
16 | TraesCS2A01G519600 | chr4A | 88.550 | 262 | 29 | 1 | 4221 | 4482 | 573362367 | 573362627 | 4.390000e-82 | 316.0 |
17 | TraesCS2A01G519600 | chr4A | 91.304 | 161 | 10 | 3 | 4660 | 4820 | 150653466 | 150653310 | 4.590000e-52 | 217.0 |
18 | TraesCS2A01G519600 | chr4A | 89.759 | 166 | 17 | 0 | 4659 | 4824 | 101750320 | 101750485 | 5.930000e-51 | 213.0 |
19 | TraesCS2A01G519600 | chr1B | 89.919 | 248 | 20 | 3 | 4232 | 4479 | 651275805 | 651276047 | 1.580000e-81 | 315.0 |
20 | TraesCS2A01G519600 | chrUn | 88.716 | 257 | 27 | 2 | 4224 | 4480 | 67654941 | 67654687 | 5.680000e-81 | 313.0 |
21 | TraesCS2A01G519600 | chr5D | 91.824 | 159 | 9 | 3 | 4659 | 4817 | 461072756 | 461072602 | 1.270000e-52 | 219.0 |
22 | TraesCS2A01G519600 | chr5B | 86.000 | 200 | 22 | 3 | 7034 | 7227 | 61352837 | 61352638 | 7.670000e-50 | 209.0 |
23 | TraesCS2A01G519600 | chr3B | 89.080 | 174 | 9 | 7 | 4644 | 4817 | 605663437 | 605663274 | 2.760000e-49 | 207.0 |
24 | TraesCS2A01G519600 | chr3B | 88.757 | 169 | 14 | 4 | 4649 | 4817 | 805684947 | 805684784 | 1.280000e-47 | 202.0 |
25 | TraesCS2A01G519600 | chr3B | 83.696 | 184 | 21 | 3 | 583 | 765 | 826120861 | 826121036 | 1.680000e-36 | 165.0 |
26 | TraesCS2A01G519600 | chr6D | 89.634 | 164 | 13 | 1 | 4654 | 4817 | 287021498 | 287021339 | 9.930000e-49 | 206.0 |
27 | TraesCS2A01G519600 | chr6D | 87.363 | 182 | 18 | 3 | 4646 | 4826 | 65394442 | 65394265 | 3.570000e-48 | 204.0 |
28 | TraesCS2A01G519600 | chr7B | 82.412 | 199 | 25 | 3 | 583 | 781 | 734092410 | 734092598 | 1.680000e-36 | 165.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G519600 | chr2A | 742719405 | 742726950 | 7545 | True | 13935.000000 | 13935 | 100.0000 | 1 | 7546 | 1 | chr2A.!!$R2 | 7545 |
1 | TraesCS2A01G519600 | chr2D | 609774448 | 609781946 | 7498 | True | 3619.333333 | 8493 | 91.0600 | 22 | 7546 | 3 | chr2D.!!$R2 | 7524 |
2 | TraesCS2A01G519600 | chr2B | 744165865 | 744173697 | 7832 | True | 1850.333333 | 5036 | 92.6995 | 69 | 7546 | 6 | chr2B.!!$R1 | 7477 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
865 | 1072 | 0.107410 | TTTGTGCAAGGACGGACTGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 | F |
900 | 1107 | 0.107654 | ACATCAGCTAAAGGGTCGGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 | F |
1194 | 1413 | 1.202533 | ACTCAACACCTTCCTGTCACG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 | F |
1223 | 1449 | 1.203187 | TCTGGACACCTTCCTGTAGCT | 60.203 | 52.381 | 0.00 | 0.00 | 46.10 | 3.32 | F |
2216 | 2475 | 2.034053 | TGTGTTTCTTCAATTCCGCACC | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 | F |
2354 | 2613 | 2.633481 | ACCACTTCCACAGGTACTTCTC | 59.367 | 50.000 | 0.00 | 0.00 | 34.60 | 2.87 | F |
4050 | 4314 | 0.031994 | GAAAAGCCAACGTGTGCCAT | 59.968 | 50.000 | 5.99 | 0.00 | 0.00 | 4.40 | F |
5624 | 6192 | 0.249615 | AGTGGATGCATCACCGATCG | 60.250 | 55.000 | 27.25 | 8.51 | 35.87 | 3.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2491 | 2754 | 1.604278 | GAGCCGGGCTATTGAAATGAC | 59.396 | 52.381 | 23.92 | 0.84 | 39.88 | 3.06 | R |
2929 | 3193 | 8.941977 | TCATAGTGTAAAAACGCACAGATAATT | 58.058 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 | R |
2957 | 3221 | 4.219944 | ACAATGTTTCTACTCGAGGCACTA | 59.780 | 41.667 | 18.41 | 0.00 | 41.55 | 2.74 | R |
3122 | 3386 | 5.762825 | AGTTGACATATTAGCAATGCCTG | 57.237 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 | R |
3754 | 4018 | 1.393883 | GCCACGAGAGAAATTCCGTTC | 59.606 | 52.381 | 0.00 | 0.00 | 32.71 | 3.95 | R |
4191 | 4455 | 1.923864 | GTTGGGTGCAACTTTTTGACG | 59.076 | 47.619 | 0.00 | 0.00 | 36.74 | 4.35 | R |
6009 | 6577 | 1.043816 | CGGCCTCCATCAGTAGTCAT | 58.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 | R |
6767 | 7344 | 0.801251 | GGCTCAGTGATGTGCAACTC | 59.199 | 55.000 | 5.34 | 0.00 | 38.04 | 3.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 4.340246 | CAGCAGCAGCCAGACCCA | 62.340 | 66.667 | 0.00 | 0.00 | 43.56 | 4.51 |
20 | 21 | 4.031129 | AGCAGCAGCCAGACCCAG | 62.031 | 66.667 | 0.00 | 0.00 | 43.56 | 4.45 |
25 | 26 | 2.930019 | CAGCCAGACCCAGACCCA | 60.930 | 66.667 | 0.00 | 0.00 | 0.00 | 4.51 |
40 | 41 | 4.340246 | CCAGACCCAGCAGCAGCA | 62.340 | 66.667 | 3.17 | 0.00 | 45.49 | 4.41 |
42 | 43 | 2.282040 | AGACCCAGCAGCAGCAAC | 60.282 | 61.111 | 3.17 | 0.00 | 45.49 | 4.17 |
43 | 44 | 3.368571 | GACCCAGCAGCAGCAACC | 61.369 | 66.667 | 3.17 | 0.00 | 45.49 | 3.77 |
45 | 46 | 4.980702 | CCCAGCAGCAGCAACCCA | 62.981 | 66.667 | 3.17 | 0.00 | 45.49 | 4.51 |
46 | 47 | 2.913578 | CCAGCAGCAGCAACCCAA | 60.914 | 61.111 | 3.17 | 0.00 | 45.49 | 4.12 |
47 | 48 | 2.649034 | CAGCAGCAGCAACCCAAG | 59.351 | 61.111 | 3.17 | 0.00 | 45.49 | 3.61 |
48 | 49 | 3.300765 | AGCAGCAGCAACCCAAGC | 61.301 | 61.111 | 3.17 | 0.00 | 45.49 | 4.01 |
49 | 50 | 4.368543 | GCAGCAGCAACCCAAGCC | 62.369 | 66.667 | 0.00 | 0.00 | 41.58 | 4.35 |
50 | 51 | 4.047059 | CAGCAGCAACCCAAGCCG | 62.047 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
119 | 128 | 3.120191 | CCTACCACCCTCCCTCCT | 58.880 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
169 | 178 | 2.204306 | CCTCCCCTTCCCCCAACT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
171 | 180 | 2.609610 | TCCCCTTCCCCCAACTCG | 60.610 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
172 | 181 | 4.426313 | CCCCTTCCCCCAACTCGC | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 5.03 |
174 | 183 | 4.426313 | CCTTCCCCCAACTCGCCC | 62.426 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
283 | 469 | 2.590645 | CGTCTCCTCCTCCCTCGA | 59.409 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
405 | 592 | 4.711949 | CGCTTGGTGCTGCTCCCT | 62.712 | 66.667 | 17.31 | 0.00 | 40.11 | 4.20 |
406 | 593 | 3.060615 | GCTTGGTGCTGCTCCCTG | 61.061 | 66.667 | 17.31 | 11.04 | 38.95 | 4.45 |
407 | 594 | 3.060615 | CTTGGTGCTGCTCCCTGC | 61.061 | 66.667 | 17.31 | 0.00 | 43.25 | 4.85 |
408 | 595 | 4.666253 | TTGGTGCTGCTCCCTGCC | 62.666 | 66.667 | 17.31 | 3.24 | 42.00 | 4.85 |
594 | 783 | 2.774774 | CGCAGAGTTTCAGCGCTC | 59.225 | 61.111 | 7.13 | 0.00 | 44.73 | 5.03 |
650 | 849 | 5.041940 | CCGCTCCACTTTACTTACTGTATC | 58.958 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
662 | 862 | 9.483489 | TTTACTTACTGTATCAGGATTCTACCA | 57.517 | 33.333 | 1.90 | 0.00 | 35.51 | 3.25 |
666 | 866 | 6.919775 | ACTGTATCAGGATTCTACCATACC | 57.080 | 41.667 | 1.90 | 0.00 | 35.51 | 2.73 |
704 | 904 | 0.247460 | GGCTTCCCAATTTGAGTGCC | 59.753 | 55.000 | 0.00 | 2.91 | 0.00 | 5.01 |
707 | 907 | 0.189574 | TTCCCAATTTGAGTGCCCCA | 59.810 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
718 | 918 | 0.853530 | AGTGCCCCAGTTCCTTTTCT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
731 | 938 | 1.880027 | CCTTTTCTGTGTGCCACTACC | 59.120 | 52.381 | 0.00 | 0.00 | 35.11 | 3.18 |
755 | 962 | 6.589907 | CCGCATTTGTGCTACATCTATATGTA | 59.410 | 38.462 | 1.46 | 1.46 | 44.66 | 2.29 |
756 | 963 | 7.278646 | CCGCATTTGTGCTACATCTATATGTAT | 59.721 | 37.037 | 1.78 | 0.00 | 45.33 | 2.29 |
757 | 964 | 9.301153 | CGCATTTGTGCTACATCTATATGTATA | 57.699 | 33.333 | 1.78 | 0.00 | 45.33 | 1.47 |
787 | 994 | 4.442893 | GGCTTACCTTGCAACTTCCTTTTT | 60.443 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
790 | 997 | 6.681865 | GCTTACCTTGCAACTTCCTTTTTGTA | 60.682 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
865 | 1072 | 0.107410 | TTTGTGCAAGGACGGACTGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
878 | 1085 | 0.534203 | GGACTGTGGACGGCTTTTGA | 60.534 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
881 | 1088 | 1.021202 | CTGTGGACGGCTTTTGACAA | 58.979 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
900 | 1107 | 0.107654 | ACATCAGCTAAAGGGTCGGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
932 | 1139 | 1.561542 | AGTTATTGGAGCTGTGGAGGG | 59.438 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
946 | 1153 | 2.284258 | AGGGTCTCTCGCCAGCTT | 60.284 | 61.111 | 0.00 | 0.00 | 0.00 | 3.74 |
1042 | 1249 | 6.923508 | GGACTTTAAGAGGTTGGTCATTTTTG | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
1050 | 1257 | 7.334858 | AGAGGTTGGTCATTTTTGCTTAAAAA | 58.665 | 30.769 | 0.00 | 0.00 | 39.08 | 1.94 |
1121 | 1328 | 7.386059 | ACTTTGAAGTGACAATGTTTTCCTTT | 58.614 | 30.769 | 0.00 | 0.00 | 37.98 | 3.11 |
1122 | 1329 | 7.877612 | ACTTTGAAGTGACAATGTTTTCCTTTT | 59.122 | 29.630 | 0.00 | 0.00 | 37.98 | 2.27 |
1123 | 1330 | 8.614469 | TTTGAAGTGACAATGTTTTCCTTTTT | 57.386 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
1124 | 1331 | 7.826260 | TGAAGTGACAATGTTTTCCTTTTTC | 57.174 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1125 | 1332 | 6.816140 | TGAAGTGACAATGTTTTCCTTTTTCC | 59.184 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
1126 | 1333 | 6.544928 | AGTGACAATGTTTTCCTTTTTCCT | 57.455 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
1127 | 1334 | 6.573434 | AGTGACAATGTTTTCCTTTTTCCTC | 58.427 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1128 | 1335 | 6.381133 | AGTGACAATGTTTTCCTTTTTCCTCT | 59.619 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
1132 | 1351 | 7.619965 | ACAATGTTTTCCTTTTTCCTCTTTCA | 58.380 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
1175 | 1394 | 7.900782 | TCTTAAGCCTGAACATTTGTAGTAC | 57.099 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1177 | 1396 | 7.817962 | TCTTAAGCCTGAACATTTGTAGTACTC | 59.182 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1178 | 1397 | 5.483685 | AGCCTGAACATTTGTAGTACTCA | 57.516 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1179 | 1398 | 5.865085 | AGCCTGAACATTTGTAGTACTCAA | 58.135 | 37.500 | 0.00 | 0.93 | 0.00 | 3.02 |
1180 | 1399 | 5.701290 | AGCCTGAACATTTGTAGTACTCAAC | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1181 | 1400 | 5.468746 | GCCTGAACATTTGTAGTACTCAACA | 59.531 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1182 | 1401 | 6.565999 | GCCTGAACATTTGTAGTACTCAACAC | 60.566 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
1183 | 1402 | 6.073222 | CCTGAACATTTGTAGTACTCAACACC | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 4.16 |
1184 | 1403 | 6.588204 | TGAACATTTGTAGTACTCAACACCT | 58.412 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1185 | 1404 | 7.051623 | TGAACATTTGTAGTACTCAACACCTT | 58.948 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
1186 | 1405 | 7.225931 | TGAACATTTGTAGTACTCAACACCTTC | 59.774 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
1187 | 1406 | 5.995897 | ACATTTGTAGTACTCAACACCTTCC | 59.004 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1188 | 1407 | 5.881923 | TTTGTAGTACTCAACACCTTCCT | 57.118 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
1189 | 1408 | 4.866508 | TGTAGTACTCAACACCTTCCTG | 57.133 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1190 | 1409 | 4.220724 | TGTAGTACTCAACACCTTCCTGT | 58.779 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1191 | 1410 | 4.280174 | TGTAGTACTCAACACCTTCCTGTC | 59.720 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
1194 | 1413 | 1.202533 | ACTCAACACCTTCCTGTCACG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1223 | 1449 | 1.203187 | TCTGGACACCTTCCTGTAGCT | 60.203 | 52.381 | 0.00 | 0.00 | 46.10 | 3.32 |
1227 | 1453 | 2.427506 | GACACCTTCCTGTAGCTTTGG | 58.572 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
1250 | 1476 | 7.766628 | TGGTTCTCTCCTGTATATAGTGGTAT | 58.233 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1255 | 1481 | 8.110271 | TCTCTCCTGTATATAGTGGTATTCCTG | 58.890 | 40.741 | 0.00 | 0.00 | 34.23 | 3.86 |
1339 | 1566 | 2.123554 | GGTACCCCCTCGTCCGAT | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1383 | 1642 | 7.680730 | TGTCTTTCTTAGCTTCAATAGGTCTT | 58.319 | 34.615 | 0.00 | 0.00 | 35.80 | 3.01 |
1461 | 1720 | 6.610741 | AGAAATCGATAAAGCCAGTCATTC | 57.389 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
1477 | 1736 | 6.087555 | CCAGTCATTCGTTTTACATTTTTCCG | 59.912 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
1490 | 1749 | 5.280945 | ACATTTTTCCGTCATGTTGAACAG | 58.719 | 37.500 | 3.74 | 0.00 | 0.00 | 3.16 |
1525 | 1784 | 7.927092 | GGTTTTACTTTTACCCATTTTGCTGTA | 59.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
1526 | 1785 | 9.315525 | GTTTTACTTTTACCCATTTTGCTGTAA | 57.684 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
1527 | 1786 | 9.535878 | TTTTACTTTTACCCATTTTGCTGTAAG | 57.464 | 29.630 | 0.00 | 0.00 | 0.00 | 2.34 |
1528 | 1787 | 6.969993 | ACTTTTACCCATTTTGCTGTAAGA | 57.030 | 33.333 | 0.00 | 0.00 | 34.07 | 2.10 |
1529 | 1788 | 6.981722 | ACTTTTACCCATTTTGCTGTAAGAG | 58.018 | 36.000 | 0.00 | 0.00 | 34.07 | 2.85 |
1530 | 1789 | 6.549736 | ACTTTTACCCATTTTGCTGTAAGAGT | 59.450 | 34.615 | 0.00 | 0.00 | 35.22 | 3.24 |
1531 | 1790 | 6.969993 | TTTACCCATTTTGCTGTAAGAGTT | 57.030 | 33.333 | 0.00 | 0.00 | 34.07 | 3.01 |
1532 | 1791 | 4.853924 | ACCCATTTTGCTGTAAGAGTTG | 57.146 | 40.909 | 0.00 | 0.00 | 34.07 | 3.16 |
1533 | 1792 | 3.005791 | ACCCATTTTGCTGTAAGAGTTGC | 59.994 | 43.478 | 0.00 | 0.00 | 34.07 | 4.17 |
1534 | 1793 | 3.005684 | CCCATTTTGCTGTAAGAGTTGCA | 59.994 | 43.478 | 0.00 | 0.00 | 34.07 | 4.08 |
1535 | 1794 | 4.322198 | CCCATTTTGCTGTAAGAGTTGCAT | 60.322 | 41.667 | 0.00 | 0.00 | 34.07 | 3.96 |
1536 | 1795 | 4.860907 | CCATTTTGCTGTAAGAGTTGCATC | 59.139 | 41.667 | 0.00 | 0.00 | 34.07 | 3.91 |
1537 | 1796 | 5.463286 | CATTTTGCTGTAAGAGTTGCATCA | 58.537 | 37.500 | 0.00 | 0.00 | 34.07 | 3.07 |
1538 | 1797 | 5.710513 | TTTTGCTGTAAGAGTTGCATCAT | 57.289 | 34.783 | 0.00 | 0.00 | 34.07 | 2.45 |
1539 | 1798 | 4.690184 | TTGCTGTAAGAGTTGCATCATG | 57.310 | 40.909 | 0.00 | 0.00 | 34.07 | 3.07 |
1540 | 1799 | 3.678289 | TGCTGTAAGAGTTGCATCATGT | 58.322 | 40.909 | 0.00 | 0.00 | 34.07 | 3.21 |
1541 | 1800 | 4.074259 | TGCTGTAAGAGTTGCATCATGTT | 58.926 | 39.130 | 0.00 | 0.00 | 34.07 | 2.71 |
1542 | 1801 | 4.520111 | TGCTGTAAGAGTTGCATCATGTTT | 59.480 | 37.500 | 0.00 | 0.00 | 34.07 | 2.83 |
1543 | 1802 | 5.704978 | TGCTGTAAGAGTTGCATCATGTTTA | 59.295 | 36.000 | 0.00 | 0.00 | 34.07 | 2.01 |
1544 | 1803 | 6.375174 | TGCTGTAAGAGTTGCATCATGTTTAT | 59.625 | 34.615 | 0.00 | 0.00 | 34.07 | 1.40 |
1545 | 1804 | 7.094248 | TGCTGTAAGAGTTGCATCATGTTTATT | 60.094 | 33.333 | 0.00 | 0.00 | 34.07 | 1.40 |
1546 | 1805 | 7.430502 | GCTGTAAGAGTTGCATCATGTTTATTC | 59.569 | 37.037 | 0.00 | 0.00 | 34.07 | 1.75 |
1547 | 1806 | 7.761409 | TGTAAGAGTTGCATCATGTTTATTCC | 58.239 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1548 | 1807 | 7.611467 | TGTAAGAGTTGCATCATGTTTATTCCT | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
1549 | 1808 | 9.109393 | GTAAGAGTTGCATCATGTTTATTCCTA | 57.891 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
1550 | 1809 | 7.798596 | AGAGTTGCATCATGTTTATTCCTAG | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1551 | 1810 | 7.568349 | AGAGTTGCATCATGTTTATTCCTAGA | 58.432 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
1659 | 1918 | 3.214328 | TCATAGCACTCTATCAGACGCA | 58.786 | 45.455 | 0.00 | 0.00 | 33.37 | 5.24 |
1731 | 1990 | 2.359848 | ACTTTTGTTTAACCGTGGGCTC | 59.640 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
2100 | 2359 | 3.173965 | CCACTCTTCTTCTTCCTACCCA | 58.826 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2216 | 2475 | 2.034053 | TGTGTTTCTTCAATTCCGCACC | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
2300 | 2559 | 5.336990 | GCTAATTGCGATGCGTTACATTAAG | 59.663 | 40.000 | 0.00 | 0.00 | 39.84 | 1.85 |
2354 | 2613 | 2.633481 | ACCACTTCCACAGGTACTTCTC | 59.367 | 50.000 | 0.00 | 0.00 | 34.60 | 2.87 |
2434 | 2697 | 9.528018 | CTGAAACAATAAGCCTTTTCTTTTACA | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2603 | 2867 | 9.317936 | CTATGATTACTGCATACTTCAAGACAA | 57.682 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2928 | 3192 | 7.656412 | TCTTCATCTAGAGAGCATTATCACAC | 58.344 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
2929 | 3193 | 6.966534 | TCATCTAGAGAGCATTATCACACA | 57.033 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
2957 | 3221 | 6.795098 | TCTGTGCGTTTTTACACTATGATT | 57.205 | 33.333 | 0.00 | 0.00 | 37.68 | 2.57 |
3122 | 3386 | 8.092521 | AGATTGTGCATAATACTCTACATTGC | 57.907 | 34.615 | 8.83 | 0.00 | 0.00 | 3.56 |
3273 | 3537 | 3.991773 | TGAACATAGTTTGTCGTAGGTGC | 59.008 | 43.478 | 0.00 | 0.00 | 37.68 | 5.01 |
3289 | 3553 | 3.771216 | AGGTGCTCATGTTTTCCTTGAT | 58.229 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
3291 | 3555 | 5.324409 | AGGTGCTCATGTTTTCCTTGATTA | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
3672 | 3936 | 9.574458 | CCGTACATCTGTTCATTATTCTATAGG | 57.426 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3733 | 3997 | 4.755123 | ACTCTGATTTAAACAGTTCCCACG | 59.245 | 41.667 | 13.77 | 0.00 | 36.81 | 4.94 |
3810 | 4074 | 1.363744 | CATTTCACTCCCTGTCTCGC | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3924 | 4188 | 4.461781 | TCTTAGAGACCCGTAAAGGAACTG | 59.538 | 45.833 | 0.00 | 0.00 | 45.00 | 3.16 |
3968 | 4232 | 4.275689 | TGCTGTGGCATACATATAACTTGC | 59.724 | 41.667 | 0.00 | 0.00 | 44.28 | 4.01 |
4050 | 4314 | 0.031994 | GAAAAGCCAACGTGTGCCAT | 59.968 | 50.000 | 5.99 | 0.00 | 0.00 | 4.40 |
4191 | 4455 | 3.435105 | TTCAAATATGATTGCCGTGGC | 57.565 | 42.857 | 3.30 | 3.30 | 37.22 | 5.01 |
4343 | 4639 | 4.838986 | CACTAGGGCCCTACATTACATACT | 59.161 | 45.833 | 28.66 | 1.35 | 0.00 | 2.12 |
4459 | 4755 | 1.401318 | AAGTGTGGCAATGCAAGGCA | 61.401 | 50.000 | 13.61 | 13.61 | 44.86 | 4.75 |
4481 | 4777 | 3.322191 | AGAACCAAACAGCCCCTTAAA | 57.678 | 42.857 | 0.00 | 0.00 | 0.00 | 1.52 |
4526 | 4822 | 6.916440 | ACACTTTTTGATTATCGGGGTTTAC | 58.084 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4545 | 4841 | 6.427242 | GGTTTACAGAGAACTAAAGGGAACTG | 59.573 | 42.308 | 0.00 | 0.00 | 42.68 | 3.16 |
4582 | 4878 | 1.537202 | GGTTTCCTGTTGTGCTAGCTG | 59.463 | 52.381 | 17.23 | 0.00 | 0.00 | 4.24 |
4583 | 4879 | 1.068954 | GTTTCCTGTTGTGCTAGCTGC | 60.069 | 52.381 | 17.23 | 9.49 | 43.25 | 5.25 |
4584 | 4880 | 0.606401 | TTCCTGTTGTGCTAGCTGCC | 60.606 | 55.000 | 17.23 | 4.50 | 42.00 | 4.85 |
4585 | 4881 | 1.002868 | CCTGTTGTGCTAGCTGCCT | 60.003 | 57.895 | 17.23 | 0.00 | 42.00 | 4.75 |
4586 | 4882 | 0.250234 | CCTGTTGTGCTAGCTGCCTA | 59.750 | 55.000 | 17.23 | 0.00 | 42.00 | 3.93 |
4587 | 4883 | 1.649664 | CTGTTGTGCTAGCTGCCTAG | 58.350 | 55.000 | 17.23 | 5.45 | 43.23 | 3.02 |
4652 | 4948 | 7.263100 | TGCCTTTAACAGAATGCATATACTG | 57.737 | 36.000 | 19.70 | 19.70 | 42.53 | 2.74 |
4698 | 5245 | 8.829373 | AAGCCCTTTTAGATATTTCAATCACT | 57.171 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
4795 | 5342 | 7.497909 | CCGTATTGGAATCTCTAAAAAGGCTTA | 59.502 | 37.037 | 0.00 | 0.00 | 42.00 | 3.09 |
4833 | 5380 | 4.282195 | GGGAGTACTAGTCATCCAAGATGG | 59.718 | 50.000 | 21.72 | 0.00 | 39.43 | 3.51 |
4913 | 5460 | 4.486125 | AAACCAGCCTGTTCACATTTTT | 57.514 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
4950 | 5497 | 9.793252 | TCATGAAATCTAGCAAAAGCTATTTTC | 57.207 | 29.630 | 17.29 | 17.29 | 36.47 | 2.29 |
5038 | 5597 | 3.954200 | TGAGCAGCTATCATTGTTTGGA | 58.046 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
5129 | 5688 | 8.335532 | TGGACCTTCAGTGTATAGAATTTTTG | 57.664 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
5174 | 5733 | 9.582223 | CGTTTTACTAGATCTTTTGTGAGTTTC | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
5241 | 5809 | 6.753107 | AAAATAGCAGCTAACGTGGTAATT | 57.247 | 33.333 | 6.13 | 0.00 | 31.96 | 1.40 |
5342 | 5910 | 9.290988 | TGTGCTTGATATGTTTAACTTCCTTTA | 57.709 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
5624 | 6192 | 0.249615 | AGTGGATGCATCACCGATCG | 60.250 | 55.000 | 27.25 | 8.51 | 35.87 | 3.69 |
5852 | 6420 | 1.039856 | TTTCCTCCTGTTTTGCTGCC | 58.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
6009 | 6577 | 3.199442 | TCCATGGTTCCTTGGAGAGTA | 57.801 | 47.619 | 18.53 | 1.44 | 36.00 | 2.59 |
6146 | 6714 | 0.599558 | CGGTTTCGTCCAGGACAGTA | 59.400 | 55.000 | 20.13 | 1.20 | 32.09 | 2.74 |
6257 | 6825 | 1.336755 | GTTCAGCACACATTCCGGTTT | 59.663 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
6263 | 6831 | 2.412325 | GCACACATTCCGGTTTTACTCG | 60.412 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
6269 | 6837 | 0.669318 | TCCGGTTTTACTCGCAGCAG | 60.669 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
6278 | 6846 | 2.917227 | TCGCAGCAGTGGAGGACA | 60.917 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
6362 | 6930 | 2.042435 | CGGAGGGAAGAGGAGGCT | 60.042 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
6529 | 7100 | 1.289109 | CCAGATTTTGGCGTCGACGT | 61.289 | 55.000 | 35.48 | 17.63 | 40.87 | 4.34 |
6639 | 7210 | 3.798337 | ACAAAATTCAAAAGACAGCAGCG | 59.202 | 39.130 | 0.00 | 0.00 | 0.00 | 5.18 |
6732 | 7303 | 4.981806 | TGTTTCAGTTTTGCTACTTGCT | 57.018 | 36.364 | 0.00 | 0.00 | 43.37 | 3.91 |
6745 | 7316 | 1.484038 | ACTTGCTGGTTGCCTGAAAA | 58.516 | 45.000 | 0.00 | 0.00 | 42.00 | 2.29 |
6767 | 7344 | 0.543277 | TTGATGCCTCTGCCACCTAG | 59.457 | 55.000 | 0.00 | 0.00 | 36.33 | 3.02 |
6787 | 7364 | 0.607489 | AGTTGCACATCACTGAGCCC | 60.607 | 55.000 | 0.00 | 0.00 | 38.09 | 5.19 |
6797 | 7376 | 0.883833 | CACTGAGCCCAAAAATCGCT | 59.116 | 50.000 | 0.00 | 0.00 | 34.97 | 4.93 |
6836 | 7416 | 6.528826 | CAAGACTGTGACGACATCAAAATAG | 58.471 | 40.000 | 0.00 | 0.00 | 39.72 | 1.73 |
6837 | 7417 | 6.025749 | AGACTGTGACGACATCAAAATAGA | 57.974 | 37.500 | 0.00 | 0.00 | 39.72 | 1.98 |
6838 | 7418 | 6.634805 | AGACTGTGACGACATCAAAATAGAT | 58.365 | 36.000 | 0.00 | 0.00 | 39.72 | 1.98 |
6840 | 7420 | 6.398095 | ACTGTGACGACATCAAAATAGATGA | 58.602 | 36.000 | 10.59 | 0.00 | 46.51 | 2.92 |
6841 | 7421 | 7.044181 | ACTGTGACGACATCAAAATAGATGAT | 58.956 | 34.615 | 10.59 | 0.00 | 46.51 | 2.45 |
6842 | 7422 | 7.550551 | ACTGTGACGACATCAAAATAGATGATT | 59.449 | 33.333 | 10.59 | 0.00 | 46.51 | 2.57 |
6843 | 7423 | 8.267620 | TGTGACGACATCAAAATAGATGATTT | 57.732 | 30.769 | 10.59 | 0.00 | 46.51 | 2.17 |
6844 | 7424 | 8.729756 | TGTGACGACATCAAAATAGATGATTTT | 58.270 | 29.630 | 10.59 | 0.00 | 46.60 | 1.82 |
6879 | 7459 | 3.092334 | GAGCTTCTCTCTCCGATTTCC | 57.908 | 52.381 | 0.00 | 0.00 | 38.78 | 3.13 |
6880 | 7460 | 2.428890 | GAGCTTCTCTCTCCGATTTCCA | 59.571 | 50.000 | 0.00 | 0.00 | 38.78 | 3.53 |
6881 | 7461 | 3.037549 | AGCTTCTCTCTCCGATTTCCAT | 58.962 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
6882 | 7462 | 3.454082 | AGCTTCTCTCTCCGATTTCCATT | 59.546 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
6883 | 7463 | 4.651503 | AGCTTCTCTCTCCGATTTCCATTA | 59.348 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
6884 | 7464 | 5.129485 | AGCTTCTCTCTCCGATTTCCATTAA | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6885 | 7465 | 5.235401 | GCTTCTCTCTCCGATTTCCATTAAC | 59.765 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
6886 | 7466 | 5.932619 | TCTCTCTCCGATTTCCATTAACA | 57.067 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
6889 | 7469 | 6.154534 | TCTCTCTCCGATTTCCATTAACAGAA | 59.845 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
7006 | 7589 | 3.728385 | AAGAGGTTTCAGGATTCAGGG | 57.272 | 47.619 | 0.00 | 0.00 | 0.00 | 4.45 |
7007 | 7590 | 2.637165 | AGAGGTTTCAGGATTCAGGGT | 58.363 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
7009 | 7592 | 1.279271 | AGGTTTCAGGATTCAGGGTCG | 59.721 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 4.340246 | TGGGTCTGGCTGCTGCTG | 62.340 | 66.667 | 15.64 | 8.88 | 39.59 | 4.41 |
3 | 4 | 4.031129 | CTGGGTCTGGCTGCTGCT | 62.031 | 66.667 | 15.64 | 0.00 | 39.59 | 4.24 |
4 | 5 | 4.025858 | TCTGGGTCTGGCTGCTGC | 62.026 | 66.667 | 7.10 | 7.10 | 38.76 | 5.25 |
5 | 6 | 2.046507 | GTCTGGGTCTGGCTGCTG | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
6 | 7 | 3.325753 | GGTCTGGGTCTGGCTGCT | 61.326 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
7 | 8 | 4.416738 | GGGTCTGGGTCTGGCTGC | 62.417 | 72.222 | 0.00 | 0.00 | 0.00 | 5.25 |
8 | 9 | 2.930019 | TGGGTCTGGGTCTGGCTG | 60.930 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
9 | 10 | 2.608988 | CTGGGTCTGGGTCTGGCT | 60.609 | 66.667 | 0.00 | 0.00 | 0.00 | 4.75 |
10 | 11 | 2.607750 | TCTGGGTCTGGGTCTGGC | 60.608 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
11 | 12 | 2.294078 | GGTCTGGGTCTGGGTCTGG | 61.294 | 68.421 | 0.00 | 0.00 | 0.00 | 3.86 |
12 | 13 | 2.294078 | GGGTCTGGGTCTGGGTCTG | 61.294 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
13 | 14 | 2.122954 | GGGTCTGGGTCTGGGTCT | 59.877 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
14 | 15 | 2.203938 | TGGGTCTGGGTCTGGGTC | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
15 | 16 | 2.203998 | CTGGGTCTGGGTCTGGGT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.51 |
16 | 17 | 3.721706 | GCTGGGTCTGGGTCTGGG | 61.722 | 72.222 | 0.00 | 0.00 | 0.00 | 4.45 |
17 | 18 | 2.930019 | TGCTGGGTCTGGGTCTGG | 60.930 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
18 | 19 | 2.667418 | CTGCTGGGTCTGGGTCTG | 59.333 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
19 | 20 | 3.325753 | GCTGCTGGGTCTGGGTCT | 61.326 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
20 | 21 | 3.618780 | CTGCTGCTGGGTCTGGGTC | 62.619 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
25 | 26 | 2.282040 | GTTGCTGCTGCTGGGTCT | 60.282 | 61.111 | 17.00 | 0.00 | 40.48 | 3.85 |
153 | 162 | 2.670148 | CGAGTTGGGGGAAGGGGAG | 61.670 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
185 | 194 | 4.787280 | AGGTCTGGAGGGGAGCGG | 62.787 | 72.222 | 0.00 | 0.00 | 36.47 | 5.52 |
264 | 447 | 2.835895 | GAGGGAGGAGGAGACGGC | 60.836 | 72.222 | 0.00 | 0.00 | 0.00 | 5.68 |
327 | 513 | 1.734885 | CAGCATCAAATTCGCTACGC | 58.265 | 50.000 | 0.00 | 0.00 | 33.82 | 4.42 |
328 | 514 | 1.595489 | GGCAGCATCAAATTCGCTACG | 60.595 | 52.381 | 0.00 | 0.00 | 33.82 | 3.51 |
329 | 515 | 1.401552 | TGGCAGCATCAAATTCGCTAC | 59.598 | 47.619 | 0.00 | 0.00 | 33.82 | 3.58 |
330 | 516 | 1.748950 | TGGCAGCATCAAATTCGCTA | 58.251 | 45.000 | 0.00 | 0.00 | 33.82 | 4.26 |
331 | 517 | 1.108776 | ATGGCAGCATCAAATTCGCT | 58.891 | 45.000 | 0.00 | 0.00 | 36.10 | 4.93 |
332 | 518 | 1.205657 | CATGGCAGCATCAAATTCGC | 58.794 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
333 | 519 | 1.847818 | CCATGGCAGCATCAAATTCG | 58.152 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
389 | 576 | 3.060615 | CAGGGAGCAGCACCAAGC | 61.061 | 66.667 | 11.40 | 0.00 | 46.19 | 4.01 |
400 | 587 | 3.905678 | CTACGAGCCGGCAGGGAG | 61.906 | 72.222 | 31.54 | 21.75 | 38.47 | 4.30 |
401 | 588 | 3.733507 | ATCTACGAGCCGGCAGGGA | 62.734 | 63.158 | 31.54 | 22.14 | 38.47 | 4.20 |
402 | 589 | 3.214250 | GATCTACGAGCCGGCAGGG | 62.214 | 68.421 | 31.54 | 19.35 | 38.20 | 4.45 |
403 | 590 | 2.196925 | AGATCTACGAGCCGGCAGG | 61.197 | 63.158 | 31.54 | 22.14 | 41.62 | 4.85 |
404 | 591 | 1.007964 | CAGATCTACGAGCCGGCAG | 60.008 | 63.158 | 31.54 | 24.30 | 0.00 | 4.85 |
405 | 592 | 2.490148 | CCAGATCTACGAGCCGGCA | 61.490 | 63.158 | 31.54 | 6.82 | 0.00 | 5.69 |
406 | 593 | 1.528292 | ATCCAGATCTACGAGCCGGC | 61.528 | 60.000 | 21.89 | 21.89 | 0.00 | 6.13 |
407 | 594 | 0.523966 | GATCCAGATCTACGAGCCGG | 59.476 | 60.000 | 0.00 | 0.00 | 35.04 | 6.13 |
408 | 595 | 1.198867 | CTGATCCAGATCTACGAGCCG | 59.801 | 57.143 | 8.99 | 0.00 | 38.60 | 5.52 |
650 | 849 | 3.244112 | GGAACGGGTATGGTAGAATCCTG | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
662 | 862 | 6.531021 | CCTGATACATTTAAGGAACGGGTAT | 58.469 | 40.000 | 0.00 | 0.00 | 30.92 | 2.73 |
666 | 866 | 4.451900 | AGCCTGATACATTTAAGGAACGG | 58.548 | 43.478 | 0.00 | 0.00 | 30.92 | 4.44 |
704 | 904 | 1.338020 | GCACACAGAAAAGGAACTGGG | 59.662 | 52.381 | 0.00 | 0.00 | 40.86 | 4.45 |
731 | 938 | 6.471976 | ACATATAGATGTAGCACAAATGCG | 57.528 | 37.500 | 0.00 | 0.00 | 46.84 | 4.73 |
755 | 962 | 4.712051 | TGCAAGGTAAGCCTCATCATAT | 57.288 | 40.909 | 0.00 | 0.00 | 46.33 | 1.78 |
756 | 963 | 4.080356 | AGTTGCAAGGTAAGCCTCATCATA | 60.080 | 41.667 | 0.00 | 0.00 | 46.33 | 2.15 |
757 | 964 | 3.019564 | GTTGCAAGGTAAGCCTCATCAT | 58.980 | 45.455 | 0.00 | 0.00 | 46.33 | 2.45 |
758 | 965 | 2.040278 | AGTTGCAAGGTAAGCCTCATCA | 59.960 | 45.455 | 0.00 | 0.00 | 46.33 | 3.07 |
759 | 966 | 2.716217 | AGTTGCAAGGTAAGCCTCATC | 58.284 | 47.619 | 0.00 | 0.00 | 46.33 | 2.92 |
760 | 967 | 2.887151 | AGTTGCAAGGTAAGCCTCAT | 57.113 | 45.000 | 0.00 | 0.00 | 46.33 | 2.90 |
764 | 971 | 1.911057 | AGGAAGTTGCAAGGTAAGCC | 58.089 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
865 | 1072 | 1.606668 | GATGTTGTCAAAAGCCGTCCA | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
878 | 1085 | 2.615493 | CCGACCCTTTAGCTGATGTTGT | 60.615 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
881 | 1088 | 0.107654 | GCCGACCCTTTAGCTGATGT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
900 | 1107 | 4.261489 | GCTCCAATAACTGCCATCAATCAG | 60.261 | 45.833 | 0.00 | 0.00 | 36.45 | 2.90 |
932 | 1139 | 1.357991 | GAGCAAAGCTGGCGAGAGAC | 61.358 | 60.000 | 0.00 | 0.00 | 39.88 | 3.36 |
946 | 1153 | 3.347216 | GGCTATGTCAAAGGAAGAGCAA | 58.653 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
1042 | 1249 | 2.354109 | GCAGGAGTGCCTTTTTAAGC | 57.646 | 50.000 | 0.00 | 0.00 | 43.90 | 3.09 |
1101 | 1308 | 7.041721 | AGGAAAAAGGAAAACATTGTCACTTC | 58.958 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1121 | 1328 | 5.471116 | CAGTCATGACATGTGAAAGAGGAAA | 59.529 | 40.000 | 27.02 | 0.00 | 0.00 | 3.13 |
1122 | 1329 | 4.999311 | CAGTCATGACATGTGAAAGAGGAA | 59.001 | 41.667 | 27.02 | 0.00 | 0.00 | 3.36 |
1123 | 1330 | 4.040829 | ACAGTCATGACATGTGAAAGAGGA | 59.959 | 41.667 | 27.02 | 0.00 | 0.00 | 3.71 |
1124 | 1331 | 4.321718 | ACAGTCATGACATGTGAAAGAGG | 58.678 | 43.478 | 27.02 | 4.78 | 0.00 | 3.69 |
1125 | 1332 | 4.992951 | TGACAGTCATGACATGTGAAAGAG | 59.007 | 41.667 | 27.02 | 6.50 | 0.00 | 2.85 |
1126 | 1333 | 4.959723 | TGACAGTCATGACATGTGAAAGA | 58.040 | 39.130 | 27.02 | 0.00 | 0.00 | 2.52 |
1127 | 1334 | 5.678132 | TTGACAGTCATGACATGTGAAAG | 57.322 | 39.130 | 27.02 | 8.82 | 31.23 | 2.62 |
1128 | 1335 | 6.487668 | AGAATTGACAGTCATGACATGTGAAA | 59.512 | 34.615 | 27.02 | 20.32 | 31.23 | 2.69 |
1132 | 1351 | 7.361542 | GCTTAAGAATTGACAGTCATGACATGT | 60.362 | 37.037 | 27.02 | 24.50 | 31.23 | 3.21 |
1175 | 1394 | 1.068588 | TCGTGACAGGAAGGTGTTGAG | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1177 | 1396 | 1.948104 | TTCGTGACAGGAAGGTGTTG | 58.052 | 50.000 | 6.48 | 0.00 | 0.00 | 3.33 |
1178 | 1397 | 2.930826 | ATTCGTGACAGGAAGGTGTT | 57.069 | 45.000 | 15.17 | 0.00 | 0.00 | 3.32 |
1179 | 1398 | 2.930826 | AATTCGTGACAGGAAGGTGT | 57.069 | 45.000 | 15.17 | 0.00 | 0.00 | 4.16 |
1180 | 1399 | 3.403038 | AGAAATTCGTGACAGGAAGGTG | 58.597 | 45.455 | 15.17 | 0.00 | 0.00 | 4.00 |
1181 | 1400 | 3.325135 | AGAGAAATTCGTGACAGGAAGGT | 59.675 | 43.478 | 15.17 | 6.32 | 0.00 | 3.50 |
1182 | 1401 | 3.929610 | GAGAGAAATTCGTGACAGGAAGG | 59.070 | 47.826 | 15.17 | 0.00 | 0.00 | 3.46 |
1183 | 1402 | 4.624882 | CAGAGAGAAATTCGTGACAGGAAG | 59.375 | 45.833 | 15.17 | 0.00 | 0.00 | 3.46 |
1184 | 1403 | 4.560128 | CAGAGAGAAATTCGTGACAGGAA | 58.440 | 43.478 | 12.62 | 12.62 | 0.00 | 3.36 |
1185 | 1404 | 3.056536 | CCAGAGAGAAATTCGTGACAGGA | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1186 | 1405 | 3.056536 | TCCAGAGAGAAATTCGTGACAGG | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
1187 | 1406 | 3.923461 | GTCCAGAGAGAAATTCGTGACAG | 59.077 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1188 | 1407 | 3.320826 | TGTCCAGAGAGAAATTCGTGACA | 59.679 | 43.478 | 0.00 | 0.00 | 31.89 | 3.58 |
1189 | 1408 | 3.675698 | GTGTCCAGAGAGAAATTCGTGAC | 59.324 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
1190 | 1409 | 3.306088 | GGTGTCCAGAGAGAAATTCGTGA | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
1191 | 1410 | 2.996621 | GGTGTCCAGAGAGAAATTCGTG | 59.003 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1194 | 1413 | 4.257731 | GGAAGGTGTCCAGAGAGAAATTC | 58.742 | 47.826 | 0.00 | 0.00 | 46.97 | 2.17 |
1223 | 1449 | 6.901300 | ACCACTATATACAGGAGAGAACCAAA | 59.099 | 38.462 | 3.32 | 0.00 | 0.00 | 3.28 |
1227 | 1453 | 8.741841 | GGAATACCACTATATACAGGAGAGAAC | 58.258 | 40.741 | 3.32 | 0.00 | 35.97 | 3.01 |
1255 | 1481 | 3.181575 | GCAAAAGTGTATGTTTCGGCAAC | 59.818 | 43.478 | 0.00 | 0.00 | 35.71 | 4.17 |
1339 | 1566 | 2.906389 | ACAGTGAGAAAGATGCCAGGTA | 59.094 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
1398 | 1657 | 7.737869 | TGACATAACTCTTACAGGTAAAACCA | 58.262 | 34.615 | 0.00 | 0.00 | 41.95 | 3.67 |
1443 | 1702 | 3.520290 | ACGAATGACTGGCTTTATCGA | 57.480 | 42.857 | 0.00 | 0.00 | 33.42 | 3.59 |
1447 | 1706 | 6.811253 | ATGTAAAACGAATGACTGGCTTTA | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
1461 | 1720 | 6.415280 | TCAACATGACGGAAAAATGTAAAACG | 59.585 | 34.615 | 0.00 | 0.00 | 33.48 | 3.60 |
1477 | 1736 | 5.473504 | ACCCAGTTTATCTGTTCAACATGAC | 59.526 | 40.000 | 0.00 | 0.00 | 42.19 | 3.06 |
1502 | 1761 | 8.915036 | TCTTACAGCAAAATGGGTAAAAGTAAA | 58.085 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
1503 | 1762 | 8.466617 | TCTTACAGCAAAATGGGTAAAAGTAA | 57.533 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
1504 | 1763 | 7.722285 | ACTCTTACAGCAAAATGGGTAAAAGTA | 59.278 | 33.333 | 0.00 | 0.00 | 28.28 | 2.24 |
1505 | 1764 | 6.549736 | ACTCTTACAGCAAAATGGGTAAAAGT | 59.450 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1506 | 1765 | 6.981722 | ACTCTTACAGCAAAATGGGTAAAAG | 58.018 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1507 | 1766 | 6.969993 | ACTCTTACAGCAAAATGGGTAAAA | 57.030 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1525 | 1784 | 8.049117 | TCTAGGAATAAACATGATGCAACTCTT | 58.951 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1526 | 1785 | 7.568349 | TCTAGGAATAAACATGATGCAACTCT | 58.432 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
1527 | 1786 | 7.792374 | TCTAGGAATAAACATGATGCAACTC | 57.208 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1528 | 1787 | 8.757982 | ATTCTAGGAATAAACATGATGCAACT | 57.242 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
1541 | 1800 | 9.823647 | CTGCTTCTCTGTTTATTCTAGGAATAA | 57.176 | 33.333 | 8.17 | 8.17 | 0.00 | 1.40 |
1542 | 1801 | 7.928706 | GCTGCTTCTCTGTTTATTCTAGGAATA | 59.071 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1543 | 1802 | 6.765512 | GCTGCTTCTCTGTTTATTCTAGGAAT | 59.234 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1544 | 1803 | 6.109359 | GCTGCTTCTCTGTTTATTCTAGGAA | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1545 | 1804 | 5.395768 | GGCTGCTTCTCTGTTTATTCTAGGA | 60.396 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
1546 | 1805 | 4.813697 | GGCTGCTTCTCTGTTTATTCTAGG | 59.186 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1547 | 1806 | 5.423015 | TGGCTGCTTCTCTGTTTATTCTAG | 58.577 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
1548 | 1807 | 5.046304 | ACTGGCTGCTTCTCTGTTTATTCTA | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1549 | 1808 | 4.260170 | CTGGCTGCTTCTCTGTTTATTCT | 58.740 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
1550 | 1809 | 4.006319 | ACTGGCTGCTTCTCTGTTTATTC | 58.994 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
1551 | 1810 | 4.026356 | ACTGGCTGCTTCTCTGTTTATT | 57.974 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
1594 | 1853 | 5.363562 | TTCTACATCATCACTCCAGCATT | 57.636 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
1919 | 2178 | 2.507407 | TGGGGTGCCTAAGTGATTTC | 57.493 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2100 | 2359 | 5.571784 | ATGCAATTTGAGTTGTCGATGAT | 57.428 | 34.783 | 0.00 | 0.00 | 0.00 | 2.45 |
2216 | 2475 | 3.201290 | AGAAGATGGAGCAACATAAGCG | 58.799 | 45.455 | 0.00 | 0.00 | 37.01 | 4.68 |
2300 | 2559 | 8.231161 | GCAAAGAAGTCCATTAGAAAGTAACTC | 58.769 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2441 | 2704 | 9.738832 | GTGTAAAAGCACTTAAAAGGTTTATCA | 57.261 | 29.630 | 4.91 | 5.18 | 34.69 | 2.15 |
2491 | 2754 | 1.604278 | GAGCCGGGCTATTGAAATGAC | 59.396 | 52.381 | 23.92 | 0.84 | 39.88 | 3.06 |
2928 | 3192 | 8.998989 | CATAGTGTAAAAACGCACAGATAATTG | 58.001 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2929 | 3193 | 8.941977 | TCATAGTGTAAAAACGCACAGATAATT | 58.058 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2957 | 3221 | 4.219944 | ACAATGTTTCTACTCGAGGCACTA | 59.780 | 41.667 | 18.41 | 0.00 | 41.55 | 2.74 |
3122 | 3386 | 5.762825 | AGTTGACATATTAGCAATGCCTG | 57.237 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
3230 | 3494 | 9.399797 | TGTTCAGAGAATTATGCTTAACATGAT | 57.600 | 29.630 | 0.00 | 0.00 | 40.06 | 2.45 |
3273 | 3537 | 6.209391 | ACAGGGTTAATCAAGGAAAACATGAG | 59.791 | 38.462 | 0.00 | 0.00 | 29.25 | 2.90 |
3289 | 3553 | 8.885722 | CAGCGTATAGAAAAATTACAGGGTTAA | 58.114 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3291 | 3555 | 6.882678 | ACAGCGTATAGAAAAATTACAGGGTT | 59.117 | 34.615 | 0.00 | 0.00 | 0.00 | 4.11 |
3417 | 3681 | 8.759641 | CATGATTCTCACTACAATACAAGTAGC | 58.240 | 37.037 | 0.00 | 0.00 | 42.04 | 3.58 |
3672 | 3936 | 5.173774 | TCTTGTGCACAATGAAAGACTTC | 57.826 | 39.130 | 31.17 | 0.00 | 35.02 | 3.01 |
3754 | 4018 | 1.393883 | GCCACGAGAGAAATTCCGTTC | 59.606 | 52.381 | 0.00 | 0.00 | 32.71 | 3.95 |
3770 | 4034 | 2.143925 | GACTTTACACACTCCTGCCAC | 58.856 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
3832 | 4096 | 2.158798 | AGTGGTCATCATGCAGATCCAG | 60.159 | 50.000 | 0.00 | 0.00 | 32.84 | 3.86 |
3924 | 4188 | 5.880887 | AGCATACAAAGTTAGGAAAGTAGGC | 59.119 | 40.000 | 0.00 | 0.00 | 38.91 | 3.93 |
3995 | 4259 | 9.226606 | GTATAACCAATATTAACTGGCATGCTA | 57.773 | 33.333 | 18.92 | 11.28 | 36.03 | 3.49 |
4191 | 4455 | 1.923864 | GTTGGGTGCAACTTTTTGACG | 59.076 | 47.619 | 0.00 | 0.00 | 36.74 | 4.35 |
4392 | 4688 | 9.573133 | CTTGCCTAAGGTTAGTTCAATAAAATG | 57.427 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4398 | 4694 | 4.923415 | AGCTTGCCTAAGGTTAGTTCAAT | 58.077 | 39.130 | 0.00 | 0.00 | 41.61 | 2.57 |
4426 | 4722 | 3.857010 | GCCACACTTTGCCATACACTTTC | 60.857 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
4430 | 4726 | 0.958091 | TGCCACACTTTGCCATACAC | 59.042 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4459 | 4755 | 4.668138 | TTAAGGGGCTGTTTGGTTCTAT | 57.332 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
4499 | 4795 | 5.562635 | ACCCCGATAATCAAAAAGTGTACA | 58.437 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
4526 | 4822 | 3.339141 | GCCAGTTCCCTTTAGTTCTCTG | 58.661 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4554 | 4850 | 1.569072 | ACAACAGGAAACCCAGAACCT | 59.431 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
4582 | 4878 | 5.880054 | TTTTCAAGTGTATTGAGCTAGGC | 57.120 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
4583 | 4879 | 7.227512 | CCCTATTTTCAAGTGTATTGAGCTAGG | 59.772 | 40.741 | 0.00 | 11.44 | 32.00 | 3.02 |
4584 | 4880 | 7.770897 | ACCCTATTTTCAAGTGTATTGAGCTAG | 59.229 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
4585 | 4881 | 7.552687 | CACCCTATTTTCAAGTGTATTGAGCTA | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
4586 | 4882 | 6.375455 | CACCCTATTTTCAAGTGTATTGAGCT | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 4.09 |
4587 | 4883 | 6.404734 | CCACCCTATTTTCAAGTGTATTGAGC | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 4.26 |
4588 | 4884 | 6.659242 | ACCACCCTATTTTCAAGTGTATTGAG | 59.341 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4589 | 4885 | 6.548321 | ACCACCCTATTTTCAAGTGTATTGA | 58.452 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4652 | 4948 | 7.353497 | GGCTTATATTTAGAAACGGAAAGAGC | 58.647 | 38.462 | 0.00 | 0.00 | 0.00 | 4.09 |
4695 | 5242 | 5.723672 | ACATCCCTATGTATTCCGTAGTG | 57.276 | 43.478 | 0.00 | 0.00 | 44.66 | 2.74 |
4755 | 5302 | 3.567164 | CCAATACGGACTACATACGGAGT | 59.433 | 47.826 | 0.00 | 0.00 | 41.15 | 3.85 |
4795 | 5342 | 8.465971 | ACTAGTACTCCCTCCATTCCTAAATAT | 58.534 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
4833 | 5380 | 7.382898 | AGGAACTTAAGATCTTGTGTTCTCTC | 58.617 | 38.462 | 31.28 | 23.03 | 36.87 | 3.20 |
4913 | 5460 | 5.453903 | GCTAGATTTCATGACCTAAGCCAGA | 60.454 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5129 | 5688 | 2.358898 | ACGAATTCCATGCTGCCAATAC | 59.641 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
5229 | 5797 | 6.315642 | TGTGAAGACAAACAATTACCACGTTA | 59.684 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
5232 | 5800 | 5.163302 | TGTGAAGACAAACAATTACCACG | 57.837 | 39.130 | 0.00 | 0.00 | 0.00 | 4.94 |
5342 | 5910 | 3.181427 | TGGCCAAGGGTACTGTTAAATGT | 60.181 | 43.478 | 0.61 | 0.00 | 0.00 | 2.71 |
5538 | 6106 | 4.777896 | AGCAACTGATTGAAGGTAGGTCTA | 59.222 | 41.667 | 0.00 | 0.00 | 38.15 | 2.59 |
5624 | 6192 | 2.740055 | CTGATATCCGGCGGCAGC | 60.740 | 66.667 | 23.83 | 14.95 | 44.18 | 5.25 |
5852 | 6420 | 7.611213 | ATTCTCAAACAAAGGTACCTATTCG | 57.389 | 36.000 | 16.67 | 6.55 | 0.00 | 3.34 |
6009 | 6577 | 1.043816 | CGGCCTCCATCAGTAGTCAT | 58.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6146 | 6714 | 0.173708 | CGACCTCGCTAAGAGCCTTT | 59.826 | 55.000 | 0.00 | 0.00 | 45.54 | 3.11 |
6257 | 6825 | 0.898326 | TCCTCCACTGCTGCGAGTAA | 60.898 | 55.000 | 4.79 | 0.00 | 0.00 | 2.24 |
6263 | 6831 | 1.748122 | CCATGTCCTCCACTGCTGC | 60.748 | 63.158 | 0.00 | 0.00 | 0.00 | 5.25 |
6269 | 6837 | 2.592308 | GCTCCCCATGTCCTCCAC | 59.408 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
6278 | 6846 | 1.535685 | GATGAAGCAGGCTCCCCAT | 59.464 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
6437 | 7008 | 4.753662 | CGGTGGACTCCCCGGAGA | 62.754 | 72.222 | 17.73 | 0.00 | 44.53 | 3.71 |
6529 | 7100 | 1.840630 | TTGTTAGTCCGCGTCGTCGA | 61.841 | 55.000 | 4.92 | 0.00 | 39.71 | 4.20 |
6732 | 7303 | 3.814283 | GCATCAAAATTTTCAGGCAACCA | 59.186 | 39.130 | 6.57 | 0.00 | 37.17 | 3.67 |
6745 | 7316 | 1.188863 | GGTGGCAGAGGCATCAAAAT | 58.811 | 50.000 | 0.00 | 0.00 | 43.71 | 1.82 |
6767 | 7344 | 0.801251 | GGCTCAGTGATGTGCAACTC | 59.199 | 55.000 | 5.34 | 0.00 | 38.04 | 3.01 |
6787 | 7364 | 1.764851 | TTTCGGCACAGCGATTTTTG | 58.235 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
6797 | 7376 | 1.266718 | GTCTTGCAGATTTTCGGCACA | 59.733 | 47.619 | 1.79 | 0.00 | 46.55 | 4.57 |
6859 | 7439 | 2.428890 | TGGAAATCGGAGAGAGAAGCTC | 59.571 | 50.000 | 0.00 | 0.00 | 43.63 | 4.09 |
6860 | 7440 | 2.461695 | TGGAAATCGGAGAGAGAAGCT | 58.538 | 47.619 | 0.00 | 0.00 | 43.63 | 3.74 |
6861 | 7441 | 2.969628 | TGGAAATCGGAGAGAGAAGC | 57.030 | 50.000 | 0.00 | 0.00 | 43.63 | 3.86 |
6862 | 7442 | 6.341316 | TGTTAATGGAAATCGGAGAGAGAAG | 58.659 | 40.000 | 0.00 | 0.00 | 43.63 | 2.85 |
6863 | 7443 | 6.154534 | TCTGTTAATGGAAATCGGAGAGAGAA | 59.845 | 38.462 | 0.00 | 0.00 | 43.63 | 2.87 |
6864 | 7444 | 5.656859 | TCTGTTAATGGAAATCGGAGAGAGA | 59.343 | 40.000 | 0.00 | 0.00 | 43.63 | 3.10 |
6865 | 7445 | 5.907207 | TCTGTTAATGGAAATCGGAGAGAG | 58.093 | 41.667 | 0.00 | 0.00 | 43.63 | 3.20 |
6866 | 7446 | 5.932619 | TCTGTTAATGGAAATCGGAGAGA | 57.067 | 39.130 | 0.00 | 0.00 | 43.63 | 3.10 |
6867 | 7447 | 6.985188 | TTTCTGTTAATGGAAATCGGAGAG | 57.015 | 37.500 | 2.92 | 0.00 | 43.63 | 3.20 |
6868 | 7448 | 7.938140 | AATTTCTGTTAATGGAAATCGGAGA | 57.062 | 32.000 | 14.56 | 0.00 | 40.06 | 3.71 |
6869 | 7449 | 8.028938 | ACAAATTTCTGTTAATGGAAATCGGAG | 58.971 | 33.333 | 14.56 | 9.79 | 40.06 | 4.63 |
6870 | 7450 | 7.891561 | ACAAATTTCTGTTAATGGAAATCGGA | 58.108 | 30.769 | 14.56 | 0.00 | 40.06 | 4.55 |
6871 | 7451 | 8.434661 | CAACAAATTTCTGTTAATGGAAATCGG | 58.565 | 33.333 | 14.56 | 12.65 | 40.06 | 4.18 |
6872 | 7452 | 9.190858 | TCAACAAATTTCTGTTAATGGAAATCG | 57.809 | 29.630 | 14.56 | 12.28 | 40.06 | 3.34 |
6883 | 7463 | 9.447157 | TTTCCAGAATTTCAACAAATTTCTGTT | 57.553 | 25.926 | 15.59 | 0.00 | 41.47 | 3.16 |
6884 | 7464 | 9.617523 | ATTTCCAGAATTTCAACAAATTTCTGT | 57.382 | 25.926 | 15.59 | 0.00 | 41.47 | 3.41 |
6942 | 7522 | 6.096705 | TGAAACTTCTTCAAATCTCAGCCAAA | 59.903 | 34.615 | 0.00 | 0.00 | 0.00 | 3.28 |
6943 | 7523 | 5.593909 | TGAAACTTCTTCAAATCTCAGCCAA | 59.406 | 36.000 | 0.00 | 0.00 | 0.00 | 4.52 |
6944 | 7524 | 5.132502 | TGAAACTTCTTCAAATCTCAGCCA | 58.867 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
6957 | 7537 | 4.455606 | CTTGACCTGACCTGAAACTTCTT | 58.544 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.