Multiple sequence alignment - TraesCS2A01G519000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G519000 chr2A 100.000 3925 0 0 1 3925 742307389 742303465 0.000000e+00 7249.0
1 TraesCS2A01G519000 chr2A 87.903 744 64 8 863 1599 744635730 744635006 0.000000e+00 852.0
2 TraesCS2A01G519000 chr2A 86.873 678 72 10 1 668 744634098 744633428 0.000000e+00 743.0
3 TraesCS2A01G519000 chr2A 80.301 863 87 41 777 1599 744616458 744615639 3.400000e-160 575.0
4 TraesCS2A01G519000 chr2A 86.702 188 24 1 3527 3714 534621344 534621158 1.430000e-49 207.0
5 TraesCS2A01G519000 chr2D 91.502 1871 93 32 1 1843 609638228 609640060 0.000000e+00 2514.0
6 TraesCS2A01G519000 chr2D 92.436 899 50 13 2644 3529 609518188 609517295 0.000000e+00 1267.0
7 TraesCS2A01G519000 chr2D 89.093 706 61 7 902 1599 612697209 612696512 0.000000e+00 863.0
8 TraesCS2A01G519000 chr2D 90.440 659 49 3 939 1597 612760006 612759362 0.000000e+00 856.0
9 TraesCS2A01G519000 chr2D 87.658 713 49 8 863 1574 612982930 612982256 0.000000e+00 793.0
10 TraesCS2A01G519000 chr2D 85.903 681 79 12 1 668 612977686 612977010 0.000000e+00 710.0
11 TraesCS2A01G519000 chr2D 84.810 711 82 14 902 1599 612935564 612934867 0.000000e+00 691.0
12 TraesCS2A01G519000 chr2D 84.107 711 76 20 902 1599 612455495 612454809 0.000000e+00 652.0
13 TraesCS2A01G519000 chr2D 94.132 409 20 4 2249 2656 609518614 609518209 1.550000e-173 619.0
14 TraesCS2A01G519000 chr2D 85.379 554 59 14 1 550 612695878 612695343 4.430000e-154 555.0
15 TraesCS2A01G519000 chr2D 86.824 425 45 4 255 668 612754211 612753787 7.680000e-127 464.0
16 TraesCS2A01G519000 chr2D 91.698 265 21 1 1833 2097 609549362 609549099 2.230000e-97 366.0
17 TraesCS2A01G519000 chr2D 88.889 99 10 1 507 604 612695235 612695333 1.920000e-23 121.0
18 TraesCS2A01G519000 chr2D 86.486 74 8 2 596 668 612695244 612695172 3.250000e-11 80.5
19 TraesCS2A01G519000 chr2D 95.745 47 2 0 2092 2138 609518751 609518705 4.210000e-10 76.8
20 TraesCS2A01G519000 chr2D 87.719 57 7 0 680 736 24428444 24428388 2.530000e-07 67.6
21 TraesCS2A01G519000 chr2D 92.857 42 2 1 3087 3128 609517186 609517226 4.240000e-05 60.2
22 TraesCS2A01G519000 chr3A 96.160 651 23 2 2156 2806 90119926 90119278 0.000000e+00 1062.0
23 TraesCS2A01G519000 chr3A 93.380 574 22 5 1582 2154 90120569 90120011 0.000000e+00 835.0
24 TraesCS2A01G519000 chr3A 87.166 187 23 1 3528 3714 72893173 72893358 1.100000e-50 211.0
25 TraesCS2A01G519000 chr3A 83.146 89 8 6 3087 3171 207837944 207838029 1.510000e-09 75.0
26 TraesCS2A01G519000 chr2B 85.000 860 88 21 754 1586 747786676 747785831 0.000000e+00 835.0
27 TraesCS2A01G519000 chr2B 85.492 772 77 15 868 1635 747821632 747820892 0.000000e+00 773.0
28 TraesCS2A01G519000 chr2B 91.103 562 35 8 902 1461 747855334 747854786 0.000000e+00 747.0
29 TraesCS2A01G519000 chr2B 86.854 677 72 10 1 668 747781665 747780997 0.000000e+00 741.0
30 TraesCS2A01G519000 chr2B 85.614 570 53 11 1 555 747853282 747852727 4.400000e-159 571.0
31 TraesCS2A01G519000 chr2B 83.280 622 63 18 1 606 747787427 747786831 5.770000e-148 534.0
32 TraesCS2A01G519000 chr2B 86.067 445 55 7 2805 3244 744060326 744059884 4.590000e-129 472.0
33 TraesCS2A01G519000 chr2B 88.742 151 15 2 1450 1599 747854766 747854617 2.410000e-42 183.0
34 TraesCS2A01G519000 chr2B 86.777 121 16 0 548 668 747836070 747835950 6.840000e-28 135.0
35 TraesCS2A01G519000 chr2B 84.848 66 10 0 679 744 257534836 257534771 2.530000e-07 67.6
36 TraesCS2A01G519000 chr1D 89.785 372 31 3 2249 2614 400306172 400306542 1.650000e-128 470.0
37 TraesCS2A01G519000 chr1D 90.678 354 29 3 1592 1945 400305492 400305841 5.940000e-128 468.0
38 TraesCS2A01G519000 chr1D 92.045 88 5 2 2720 2806 400306858 400306944 5.330000e-24 122.0
39 TraesCS2A01G519000 chr6D 86.979 192 22 3 3525 3714 439414654 439414464 3.070000e-51 213.0
40 TraesCS2A01G519000 chr6D 85.484 186 27 0 3529 3714 216845863 216846048 1.110000e-45 195.0
41 TraesCS2A01G519000 chr5D 87.097 186 22 2 3530 3714 230419114 230419298 3.970000e-50 209.0
42 TraesCS2A01G519000 chr5D 84.848 66 10 0 679 744 332584369 332584304 2.530000e-07 67.6
43 TraesCS2A01G519000 chr7A 87.363 182 21 2 3527 3707 200598131 200598311 1.430000e-49 207.0
44 TraesCS2A01G519000 chr7A 85.246 183 27 0 3526 3708 1295946 1296128 5.180000e-44 189.0
45 TraesCS2A01G519000 chr7A 84.848 66 10 0 679 744 494506061 494505996 2.530000e-07 67.6
46 TraesCS2A01G519000 chr1B 87.027 185 23 1 3530 3714 342123468 342123651 1.430000e-49 207.0
47 TraesCS2A01G519000 chr7B 85.246 183 27 0 3526 3708 532154625 532154807 5.180000e-44 189.0
48 TraesCS2A01G519000 chr6B 87.879 66 8 0 679 744 96671820 96671755 1.170000e-10 78.7
49 TraesCS2A01G519000 chr3D 83.146 89 9 6 3087 3171 170229067 170229153 4.210000e-10 76.8
50 TraesCS2A01G519000 chr3D 88.136 59 7 0 679 737 103823843 103823901 1.960000e-08 71.3
51 TraesCS2A01G519000 chr4D 87.931 58 7 0 680 737 496282433 496282376 7.040000e-08 69.4
52 TraesCS2A01G519000 chrUn 80.488 82 10 6 679 755 240118531 240118451 1.520000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G519000 chr2A 742303465 742307389 3924 True 7249.000000 7249 100.000000 1 3925 1 chr2A.!!$R2 3924
1 TraesCS2A01G519000 chr2A 744633428 744635730 2302 True 797.500000 852 87.388000 1 1599 2 chr2A.!!$R4 1598
2 TraesCS2A01G519000 chr2A 744615639 744616458 819 True 575.000000 575 80.301000 777 1599 1 chr2A.!!$R3 822
3 TraesCS2A01G519000 chr2D 609638228 609640060 1832 False 2514.000000 2514 91.502000 1 1843 1 chr2D.!!$F2 1842
4 TraesCS2A01G519000 chr2D 612759362 612760006 644 True 856.000000 856 90.440000 939 1597 1 chr2D.!!$R5 658
5 TraesCS2A01G519000 chr2D 612982256 612982930 674 True 793.000000 793 87.658000 863 1574 1 chr2D.!!$R8 711
6 TraesCS2A01G519000 chr2D 612977010 612977686 676 True 710.000000 710 85.903000 1 668 1 chr2D.!!$R7 667
7 TraesCS2A01G519000 chr2D 612934867 612935564 697 True 691.000000 691 84.810000 902 1599 1 chr2D.!!$R6 697
8 TraesCS2A01G519000 chr2D 609517295 609518751 1456 True 654.266667 1267 94.104333 2092 3529 3 chr2D.!!$R9 1437
9 TraesCS2A01G519000 chr2D 612454809 612455495 686 True 652.000000 652 84.107000 902 1599 1 chr2D.!!$R3 697
10 TraesCS2A01G519000 chr2D 612695172 612697209 2037 True 499.500000 863 86.986000 1 1599 3 chr2D.!!$R10 1598
11 TraesCS2A01G519000 chr3A 90119278 90120569 1291 True 948.500000 1062 94.770000 1582 2806 2 chr3A.!!$R1 1224
12 TraesCS2A01G519000 chr2B 747820892 747821632 740 True 773.000000 773 85.492000 868 1635 1 chr2B.!!$R4 767
13 TraesCS2A01G519000 chr2B 747780997 747781665 668 True 741.000000 741 86.854000 1 668 1 chr2B.!!$R3 667
14 TraesCS2A01G519000 chr2B 747785831 747787427 1596 True 684.500000 835 84.140000 1 1586 2 chr2B.!!$R6 1585
15 TraesCS2A01G519000 chr2B 747852727 747855334 2607 True 500.333333 747 88.486333 1 1599 3 chr2B.!!$R7 1598
16 TraesCS2A01G519000 chr1D 400305492 400306944 1452 False 353.333333 470 90.836000 1592 2806 3 chr1D.!!$F1 1214


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 125 0.034186 TTGCGCCTCCATCCAAGAAT 60.034 50.0 4.18 0.0 0.00 2.40 F
783 904 0.648958 GTATGAAAGCGTACACCGGC 59.351 55.0 0.00 0.0 36.67 6.13 F
858 985 1.027357 ATAGTAGCCACGTACACCGG 58.973 55.0 0.00 0.0 42.24 5.28 F
2063 2653 0.336737 ATTTATGGTTTGGCCCCCGA 59.663 50.0 0.00 0.0 36.04 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1521 1.226211 GCATGCATGACACGCTCAC 60.226 57.895 30.64 5.13 33.76 3.51 R
1600 1837 1.226831 CAACGCACGGGCTTTTTGT 60.227 52.632 8.62 0.00 38.10 2.83 R
2851 4101 0.460311 ATCGTCCGAGCCTAACAAGG 59.540 55.000 0.00 0.00 0.00 3.61 R
3648 4925 0.024491 CGCTGGCGTATACAAACACG 59.976 55.000 6.83 0.00 41.04 4.49 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 2.124983 CTGACGGGCCATGTGAGG 60.125 66.667 4.39 0.00 0.00 3.86
38 40 2.927856 TGACGGGCCATGTGAGGT 60.928 61.111 4.39 0.00 0.00 3.85
39 41 1.610967 TGACGGGCCATGTGAGGTA 60.611 57.895 4.39 0.00 0.00 3.08
40 42 1.144057 GACGGGCCATGTGAGGTAG 59.856 63.158 4.39 0.00 0.00 3.18
41 43 1.305802 ACGGGCCATGTGAGGTAGA 60.306 57.895 4.39 0.00 0.00 2.59
42 44 0.907704 ACGGGCCATGTGAGGTAGAA 60.908 55.000 4.39 0.00 0.00 2.10
43 45 0.462047 CGGGCCATGTGAGGTAGAAC 60.462 60.000 4.39 0.00 0.00 3.01
44 46 0.107165 GGGCCATGTGAGGTAGAACC 60.107 60.000 4.39 0.00 38.99 3.62
118 120 1.925285 ATCCTTTGCGCCTCCATCCA 61.925 55.000 4.18 0.00 0.00 3.41
123 125 0.034186 TTGCGCCTCCATCCAAGAAT 60.034 50.000 4.18 0.00 0.00 2.40
140 142 9.880157 ATCCAAGAATCTTCATAAAACAAATGG 57.120 29.630 0.00 0.00 0.00 3.16
179 185 9.467258 CCATGCCACTTTATTAAATAACTGATG 57.533 33.333 0.00 0.00 0.00 3.07
264 273 5.618056 TGCTTAAGCTTCAGTGATTCTTG 57.382 39.130 26.90 3.94 42.66 3.02
386 395 1.268265 TCTTGTGAATCGTCGCATCG 58.732 50.000 0.00 0.00 43.64 3.84
484 502 8.495949 ACTTCTTATATTTGTGTCGACAACAAG 58.504 33.333 21.95 9.34 41.92 3.16
590 609 3.699538 TGCCTAACTCACTATGATCGTGT 59.300 43.478 0.00 0.00 34.14 4.49
594 613 6.507900 CCTAACTCACTATGATCGTGTGATT 58.492 40.000 15.82 10.53 39.55 2.57
598 617 6.212235 ACTCACTATGATCGTGTGATTCATC 58.788 40.000 15.82 0.00 39.55 2.92
674 784 7.231722 CAGTAGCTAATGTGTAATACTCCCTCT 59.768 40.741 12.98 0.00 0.00 3.69
675 785 6.658188 AGCTAATGTGTAATACTCCCTCTC 57.342 41.667 0.00 0.00 0.00 3.20
676 786 6.136857 AGCTAATGTGTAATACTCCCTCTCA 58.863 40.000 0.00 0.00 0.00 3.27
677 787 6.611642 AGCTAATGTGTAATACTCCCTCTCAA 59.388 38.462 0.00 0.00 0.00 3.02
693 814 5.659079 CCCTCTCAAGTCTCAACCTTAGTAT 59.341 44.000 0.00 0.00 0.00 2.12
700 821 9.706691 TCAAGTCTCAACCTTAGTATAACTTTG 57.293 33.333 0.00 0.00 0.00 2.77
775 896 3.743911 TGATTTGTCACGTATGAAAGCGT 59.256 39.130 0.00 0.00 42.45 5.07
777 898 4.634349 TTTGTCACGTATGAAAGCGTAC 57.366 40.909 0.00 0.00 39.48 3.67
778 899 3.285816 TGTCACGTATGAAAGCGTACA 57.714 42.857 0.00 0.00 39.48 2.90
779 900 2.981805 TGTCACGTATGAAAGCGTACAC 59.018 45.455 0.00 0.00 39.48 2.90
780 901 2.343544 GTCACGTATGAAAGCGTACACC 59.656 50.000 0.00 0.00 39.48 4.16
781 902 1.319374 CACGTATGAAAGCGTACACCG 59.681 52.381 0.00 0.00 39.48 4.94
782 903 0.918619 CGTATGAAAGCGTACACCGG 59.081 55.000 0.00 0.00 36.50 5.28
783 904 0.648958 GTATGAAAGCGTACACCGGC 59.351 55.000 0.00 0.00 36.67 6.13
809 930 6.379133 ACACGAGGAGTAATATGTCAGGTTAA 59.621 38.462 0.00 0.00 0.00 2.01
852 979 5.526115 GTGATTAAGCATAGTAGCCACGTA 58.474 41.667 0.00 0.00 34.23 3.57
854 981 4.987408 TTAAGCATAGTAGCCACGTACA 57.013 40.909 0.00 0.00 34.23 2.90
855 982 2.865343 AGCATAGTAGCCACGTACAC 57.135 50.000 0.00 0.00 34.23 2.90
856 983 1.407979 AGCATAGTAGCCACGTACACC 59.592 52.381 0.00 0.00 34.23 4.16
857 984 1.862815 GCATAGTAGCCACGTACACCG 60.863 57.143 0.00 0.00 44.03 4.94
858 985 1.027357 ATAGTAGCCACGTACACCGG 58.973 55.000 0.00 0.00 42.24 5.28
859 986 1.031571 TAGTAGCCACGTACACCGGG 61.032 60.000 6.32 0.00 42.24 5.73
1032 1186 3.764466 CTCCCGAGGCTCGTTGCT 61.764 66.667 32.41 0.00 42.39 3.91
1348 1518 3.191371 CAGGGAAAAGGCATGTTAGTGAC 59.809 47.826 0.00 0.00 0.00 3.67
1349 1519 3.074538 AGGGAAAAGGCATGTTAGTGACT 59.925 43.478 0.00 0.00 39.79 3.41
1350 1520 4.288626 AGGGAAAAGGCATGTTAGTGACTA 59.711 41.667 0.00 0.00 36.11 2.59
1351 1521 4.636206 GGGAAAAGGCATGTTAGTGACTAG 59.364 45.833 0.00 0.00 36.11 2.57
1352 1522 5.246307 GGAAAAGGCATGTTAGTGACTAGT 58.754 41.667 0.00 0.00 36.11 2.57
1435 1625 1.374252 AAGCGGTCGATGTCCACAC 60.374 57.895 0.00 0.00 0.00 3.82
1478 1703 3.872696 TCTTGTGTGTGTCATGTGAGTT 58.127 40.909 0.00 0.00 0.00 3.01
1792 2158 4.035558 GCGATGCACAAAAATCCTCTATCA 59.964 41.667 0.00 0.00 0.00 2.15
1893 2259 6.040955 TGAGTGTGACACAAAGATCTTCTACT 59.959 38.462 18.95 5.21 36.74 2.57
2014 2579 1.965935 CGGGGTCATGCACAATGATA 58.034 50.000 0.00 0.00 46.90 2.15
2063 2653 0.336737 ATTTATGGTTTGGCCCCCGA 59.663 50.000 0.00 0.00 36.04 5.14
2154 2746 0.680921 TGGACATTAGCAAGGCCAGC 60.681 55.000 5.01 9.16 0.00 4.85
2232 3098 2.223782 TGTTTCAACAAGACTGCATGGC 60.224 45.455 0.00 0.00 35.67 4.40
2383 3372 2.629617 CTGTTTGTTTCCAATGGAGGCT 59.370 45.455 0.86 0.00 31.21 4.58
2452 3442 6.313658 GTGCATATTTATCATAGCGATGTGGA 59.686 38.462 6.70 0.00 35.39 4.02
2460 3450 9.990360 TTTATCATAGCGATGTGGAACTATTTA 57.010 29.630 6.70 0.00 38.04 1.40
2642 3670 5.065218 CGCAGCTATTGAACTAAACCTCATT 59.935 40.000 0.00 0.00 0.00 2.57
2795 4036 4.935885 AGAGAAACGCATCTTGCTTTAG 57.064 40.909 0.00 0.00 42.25 1.85
2890 4140 0.889994 TTGATTGCCCATGAGCACAC 59.110 50.000 0.00 0.00 43.97 3.82
3035 4285 6.892658 ACATTTTATTCAGTGGCACAACTA 57.107 33.333 21.41 3.33 44.16 2.24
3036 4286 6.677913 ACATTTTATTCAGTGGCACAACTAC 58.322 36.000 21.41 0.00 44.16 2.73
3094 4344 7.505646 TGCGCAAACAAATAATTACATTTCAC 58.494 30.769 8.16 0.00 0.00 3.18
3248 4522 7.116090 TGTCCTGAACATTGATTAAAAATTGCG 59.884 33.333 0.00 0.00 31.20 4.85
3249 4523 6.090628 TCCTGAACATTGATTAAAAATTGCGC 59.909 34.615 0.00 0.00 0.00 6.09
3250 4524 6.128607 CCTGAACATTGATTAAAAATTGCGCA 60.129 34.615 5.66 5.66 0.00 6.09
3253 4527 8.288208 TGAACATTGATTAAAAATTGCGCAAAT 58.712 25.926 28.81 17.33 0.00 2.32
3272 4547 7.266756 GCGCAAATAAATATTTACATTGCATGC 59.733 33.333 33.10 28.76 42.67 4.06
3309 4584 9.458374 AACATATCTTAACTGGTTTTTGAAACG 57.542 29.630 0.00 0.00 0.00 3.60
3316 4591 3.175929 CTGGTTTTTGAAACGTGTGGAC 58.824 45.455 0.00 0.00 0.00 4.02
3321 4596 5.120986 GGTTTTTGAAACGTGTGGACATTTT 59.879 36.000 0.00 0.00 0.00 1.82
3409 4684 5.040635 GTCCGTGAAAACATTGTGAACAAT 58.959 37.500 2.80 2.80 46.62 2.71
3511 4788 4.494410 GTGCGTGAAAACAAAGTGTAAGAC 59.506 41.667 0.00 0.00 0.00 3.01
3514 4791 5.227184 GCGTGAAAACAAAGTGTAAGACAAG 59.773 40.000 0.00 0.00 0.00 3.16
3547 4824 6.391227 AAAAAGAGTCAATTACACTGGTGG 57.609 37.500 5.70 0.00 34.19 4.61
3548 4825 4.706842 AAGAGTCAATTACACTGGTGGT 57.293 40.909 5.70 0.00 34.19 4.16
3558 4835 2.550830 CACTGGTGGTGCTAGAACTT 57.449 50.000 0.00 0.00 39.22 2.66
3559 4836 2.146342 CACTGGTGGTGCTAGAACTTG 58.854 52.381 0.00 0.00 39.22 3.16
3560 4837 1.072331 ACTGGTGGTGCTAGAACTTGG 59.928 52.381 0.00 0.00 0.00 3.61
3561 4838 0.250727 TGGTGGTGCTAGAACTTGGC 60.251 55.000 0.00 0.00 0.00 4.52
3562 4839 1.298859 GGTGGTGCTAGAACTTGGCG 61.299 60.000 0.00 0.00 0.00 5.69
3563 4840 0.602905 GTGGTGCTAGAACTTGGCGT 60.603 55.000 0.00 0.00 0.00 5.68
3564 4841 0.970640 TGGTGCTAGAACTTGGCGTA 59.029 50.000 0.00 0.00 0.00 4.42
3565 4842 1.345089 TGGTGCTAGAACTTGGCGTAA 59.655 47.619 0.00 0.00 0.00 3.18
3566 4843 2.027561 TGGTGCTAGAACTTGGCGTAAT 60.028 45.455 0.00 0.00 0.00 1.89
3567 4844 3.007635 GGTGCTAGAACTTGGCGTAATT 58.992 45.455 0.00 0.00 0.00 1.40
3568 4845 3.181510 GGTGCTAGAACTTGGCGTAATTG 60.182 47.826 0.00 0.00 0.00 2.32
3569 4846 3.682858 GTGCTAGAACTTGGCGTAATTGA 59.317 43.478 0.00 0.00 0.00 2.57
3570 4847 4.332819 GTGCTAGAACTTGGCGTAATTGAT 59.667 41.667 0.00 0.00 0.00 2.57
3571 4848 4.570772 TGCTAGAACTTGGCGTAATTGATC 59.429 41.667 0.00 0.00 0.00 2.92
3572 4849 4.570772 GCTAGAACTTGGCGTAATTGATCA 59.429 41.667 0.00 0.00 0.00 2.92
3573 4850 4.946784 AGAACTTGGCGTAATTGATCAC 57.053 40.909 0.00 0.00 0.00 3.06
3574 4851 4.579869 AGAACTTGGCGTAATTGATCACT 58.420 39.130 0.00 0.00 0.00 3.41
3575 4852 5.003804 AGAACTTGGCGTAATTGATCACTT 58.996 37.500 0.00 0.00 0.00 3.16
3576 4853 5.473504 AGAACTTGGCGTAATTGATCACTTT 59.526 36.000 3.40 0.00 0.00 2.66
3577 4854 6.653320 AGAACTTGGCGTAATTGATCACTTTA 59.347 34.615 3.40 0.00 0.00 1.85
3578 4855 6.422776 ACTTGGCGTAATTGATCACTTTAG 57.577 37.500 3.40 0.54 0.00 1.85
3579 4856 5.938125 ACTTGGCGTAATTGATCACTTTAGT 59.062 36.000 3.40 0.00 0.00 2.24
3580 4857 5.794687 TGGCGTAATTGATCACTTTAGTG 57.205 39.130 3.40 3.47 46.91 2.74
3581 4858 4.094294 TGGCGTAATTGATCACTTTAGTGC 59.906 41.667 3.40 7.98 45.25 4.40
3582 4859 4.332819 GGCGTAATTGATCACTTTAGTGCT 59.667 41.667 3.40 0.00 45.25 4.40
3583 4860 5.522460 GGCGTAATTGATCACTTTAGTGCTA 59.478 40.000 3.40 0.00 45.25 3.49
3584 4861 6.292381 GGCGTAATTGATCACTTTAGTGCTAG 60.292 42.308 3.40 0.00 45.25 3.42
3585 4862 6.475727 GCGTAATTGATCACTTTAGTGCTAGA 59.524 38.462 3.40 0.00 45.25 2.43
3586 4863 7.010183 GCGTAATTGATCACTTTAGTGCTAGAA 59.990 37.037 3.40 0.00 45.25 2.10
3587 4864 8.321716 CGTAATTGATCACTTTAGTGCTAGAAC 58.678 37.037 3.40 0.00 45.25 3.01
3588 4865 9.372369 GTAATTGATCACTTTAGTGCTAGAACT 57.628 33.333 8.84 8.84 45.25 3.01
3589 4866 8.854614 AATTGATCACTTTAGTGCTAGAACTT 57.145 30.769 9.19 0.00 45.25 2.66
3590 4867 7.658179 TTGATCACTTTAGTGCTAGAACTTG 57.342 36.000 9.19 0.91 45.25 3.16
3591 4868 6.759272 TGATCACTTTAGTGCTAGAACTTGT 58.241 36.000 9.19 3.47 45.25 3.16
3592 4869 6.646653 TGATCACTTTAGTGCTAGAACTTGTG 59.353 38.462 9.19 15.08 45.25 3.33
3593 4870 5.297547 TCACTTTAGTGCTAGAACTTGTGG 58.702 41.667 21.22 9.79 45.25 4.17
3594 4871 5.057149 CACTTTAGTGCTAGAACTTGTGGT 58.943 41.667 9.19 0.95 39.39 4.16
3595 4872 5.050091 CACTTTAGTGCTAGAACTTGTGGTG 60.050 44.000 9.19 9.59 39.39 4.17
3596 4873 4.682778 TTAGTGCTAGAACTTGTGGTGT 57.317 40.909 9.19 0.00 0.00 4.16
3597 4874 5.794726 TTAGTGCTAGAACTTGTGGTGTA 57.205 39.130 9.19 0.00 0.00 2.90
3598 4875 3.991367 AGTGCTAGAACTTGTGGTGTAC 58.009 45.455 0.00 0.00 0.00 2.90
3599 4876 3.386726 AGTGCTAGAACTTGTGGTGTACA 59.613 43.478 0.00 0.00 37.56 2.90
3600 4877 4.040461 AGTGCTAGAACTTGTGGTGTACAT 59.960 41.667 0.00 0.00 39.48 2.29
3601 4878 4.389077 GTGCTAGAACTTGTGGTGTACATC 59.611 45.833 0.00 0.00 39.48 3.06
3602 4879 3.612860 GCTAGAACTTGTGGTGTACATCG 59.387 47.826 0.00 0.00 39.48 3.84
3603 4880 4.617530 GCTAGAACTTGTGGTGTACATCGA 60.618 45.833 0.00 0.00 39.48 3.59
3604 4881 4.330944 AGAACTTGTGGTGTACATCGAA 57.669 40.909 0.00 0.00 39.48 3.71
3605 4882 4.307432 AGAACTTGTGGTGTACATCGAAG 58.693 43.478 13.56 13.56 39.48 3.79
3606 4883 3.746045 ACTTGTGGTGTACATCGAAGT 57.254 42.857 14.60 14.60 39.48 3.01
3607 4884 3.390135 ACTTGTGGTGTACATCGAAGTG 58.610 45.455 18.02 4.16 39.48 3.16
3608 4885 2.448926 TGTGGTGTACATCGAAGTGG 57.551 50.000 3.02 0.00 33.42 4.00
3609 4886 1.689813 TGTGGTGTACATCGAAGTGGT 59.310 47.619 3.02 0.00 33.42 4.16
3610 4887 2.066262 GTGGTGTACATCGAAGTGGTG 58.934 52.381 3.02 0.00 0.00 4.17
3611 4888 1.076332 GGTGTACATCGAAGTGGTGC 58.924 55.000 3.02 0.00 0.00 5.01
3612 4889 1.606994 GGTGTACATCGAAGTGGTGCA 60.607 52.381 3.02 0.34 0.00 4.57
3613 4890 2.139917 GTGTACATCGAAGTGGTGCAA 58.860 47.619 3.02 0.00 31.43 4.08
3614 4891 2.546368 GTGTACATCGAAGTGGTGCAAA 59.454 45.455 3.02 0.00 31.43 3.68
3615 4892 3.002862 GTGTACATCGAAGTGGTGCAAAA 59.997 43.478 3.02 0.00 31.43 2.44
3616 4893 3.628032 TGTACATCGAAGTGGTGCAAAAA 59.372 39.130 3.02 0.00 0.00 1.94
3617 4894 3.078594 ACATCGAAGTGGTGCAAAAAC 57.921 42.857 0.00 0.00 0.00 2.43
3618 4895 2.687935 ACATCGAAGTGGTGCAAAAACT 59.312 40.909 0.00 0.00 0.00 2.66
3619 4896 3.130340 ACATCGAAGTGGTGCAAAAACTT 59.870 39.130 9.09 9.09 36.87 2.66
3620 4897 3.143807 TCGAAGTGGTGCAAAAACTTG 57.856 42.857 13.05 7.28 34.37 3.16
3621 4898 2.159310 TCGAAGTGGTGCAAAAACTTGG 60.159 45.455 13.05 11.97 34.37 3.61
3622 4899 1.933181 GAAGTGGTGCAAAAACTTGGC 59.067 47.619 13.05 0.00 34.37 4.52
3623 4900 1.194218 AGTGGTGCAAAAACTTGGCT 58.806 45.000 0.00 0.00 0.00 4.75
3624 4901 1.136891 AGTGGTGCAAAAACTTGGCTC 59.863 47.619 0.00 0.00 0.00 4.70
3625 4902 0.102120 TGGTGCAAAAACTTGGCTCG 59.898 50.000 0.00 0.00 0.00 5.03
3626 4903 0.597377 GGTGCAAAAACTTGGCTCGG 60.597 55.000 0.00 0.00 0.00 4.63
3627 4904 0.597377 GTGCAAAAACTTGGCTCGGG 60.597 55.000 0.00 0.00 0.00 5.14
3628 4905 1.664649 GCAAAAACTTGGCTCGGGC 60.665 57.895 0.00 0.00 37.82 6.13
3629 4906 1.371635 CAAAAACTTGGCTCGGGCG 60.372 57.895 0.00 0.00 39.81 6.13
3630 4907 1.826487 AAAAACTTGGCTCGGGCGT 60.826 52.632 0.00 0.00 39.81 5.68
3631 4908 2.070654 AAAAACTTGGCTCGGGCGTG 62.071 55.000 0.00 0.00 39.81 5.34
3637 4914 2.822255 GGCTCGGGCGTGCAAATA 60.822 61.111 0.00 0.00 39.81 1.40
3638 4915 2.403586 GCTCGGGCGTGCAAATAC 59.596 61.111 0.00 0.00 35.06 1.89
3639 4916 2.701006 CTCGGGCGTGCAAATACG 59.299 61.111 0.00 0.00 46.28 3.06
3640 4917 2.808958 CTCGGGCGTGCAAATACGG 61.809 63.158 0.00 0.00 43.87 4.02
3641 4918 3.122323 CGGGCGTGCAAATACGGT 61.122 61.111 0.00 0.00 43.87 4.83
3642 4919 2.483288 GGGCGTGCAAATACGGTG 59.517 61.111 0.00 0.00 43.87 4.94
3643 4920 2.329614 GGGCGTGCAAATACGGTGT 61.330 57.895 0.00 0.00 43.87 4.16
3644 4921 1.577421 GGCGTGCAAATACGGTGTT 59.423 52.632 0.00 0.00 43.87 3.32
3645 4922 0.797542 GGCGTGCAAATACGGTGTTA 59.202 50.000 0.00 0.00 43.87 2.41
3646 4923 1.464521 GGCGTGCAAATACGGTGTTAC 60.465 52.381 0.00 0.00 43.87 2.50
3647 4924 1.461897 GCGTGCAAATACGGTGTTACT 59.538 47.619 0.00 0.00 43.87 2.24
3648 4925 2.473376 GCGTGCAAATACGGTGTTACTC 60.473 50.000 0.00 0.00 43.87 2.59
3649 4926 2.222420 CGTGCAAATACGGTGTTACTCG 60.222 50.000 0.00 0.00 40.22 4.18
3650 4927 2.733026 GTGCAAATACGGTGTTACTCGT 59.267 45.455 8.86 8.86 42.55 4.18
3651 4928 2.732500 TGCAAATACGGTGTTACTCGTG 59.267 45.455 12.56 0.00 40.05 4.35
3652 4929 2.733026 GCAAATACGGTGTTACTCGTGT 59.267 45.455 12.56 0.00 40.05 4.49
3653 4930 3.184986 GCAAATACGGTGTTACTCGTGTT 59.815 43.478 12.56 9.99 41.16 3.32
3654 4931 4.318974 GCAAATACGGTGTTACTCGTGTTT 60.319 41.667 15.33 15.33 46.13 2.83
3655 4932 4.977741 AATACGGTGTTACTCGTGTTTG 57.022 40.909 12.56 0.00 37.41 2.93
3656 4933 2.298411 ACGGTGTTACTCGTGTTTGT 57.702 45.000 0.00 0.00 38.25 2.83
3657 4934 3.435105 ACGGTGTTACTCGTGTTTGTA 57.565 42.857 0.00 0.00 38.25 2.41
3658 4935 3.981211 ACGGTGTTACTCGTGTTTGTAT 58.019 40.909 0.00 0.00 38.25 2.29
3659 4936 5.119931 ACGGTGTTACTCGTGTTTGTATA 57.880 39.130 0.00 0.00 38.25 1.47
3660 4937 4.917415 ACGGTGTTACTCGTGTTTGTATAC 59.083 41.667 0.00 0.00 38.25 1.47
3661 4938 4.029418 CGGTGTTACTCGTGTTTGTATACG 59.971 45.833 0.00 0.00 39.85 3.06
3662 4939 4.201523 GGTGTTACTCGTGTTTGTATACGC 60.202 45.833 0.00 0.00 38.57 4.42
3663 4940 3.919804 TGTTACTCGTGTTTGTATACGCC 59.080 43.478 0.00 0.00 38.57 5.68
3664 4941 2.728690 ACTCGTGTTTGTATACGCCA 57.271 45.000 0.00 0.00 38.57 5.69
3665 4942 2.602878 ACTCGTGTTTGTATACGCCAG 58.397 47.619 0.00 0.00 38.57 4.85
3666 4943 1.323534 CTCGTGTTTGTATACGCCAGC 59.676 52.381 0.00 0.00 38.57 4.85
3667 4944 0.024491 CGTGTTTGTATACGCCAGCG 59.976 55.000 11.05 11.05 46.03 5.18
3668 4945 1.352114 GTGTTTGTATACGCCAGCGA 58.648 50.000 20.32 2.73 42.83 4.93
3669 4946 1.060122 GTGTTTGTATACGCCAGCGAC 59.940 52.381 20.32 7.23 42.83 5.19
3670 4947 0.296642 GTTTGTATACGCCAGCGACG 59.703 55.000 20.32 0.00 42.83 5.12
3671 4948 0.170784 TTTGTATACGCCAGCGACGA 59.829 50.000 20.32 3.55 42.83 4.20
3672 4949 0.382873 TTGTATACGCCAGCGACGAT 59.617 50.000 20.32 10.96 42.83 3.73
3673 4950 0.317519 TGTATACGCCAGCGACGATG 60.318 55.000 20.32 6.03 42.83 3.84
3674 4951 0.040692 GTATACGCCAGCGACGATGA 60.041 55.000 20.32 0.00 42.83 2.92
3675 4952 0.879090 TATACGCCAGCGACGATGAT 59.121 50.000 20.32 2.30 42.83 2.45
3676 4953 0.664466 ATACGCCAGCGACGATGATG 60.664 55.000 20.32 8.79 42.83 3.07
3677 4954 1.720694 TACGCCAGCGACGATGATGA 61.721 55.000 20.32 0.00 42.83 2.92
3678 4955 2.298629 CGCCAGCGACGATGATGAG 61.299 63.158 15.87 0.00 42.83 2.90
3679 4956 1.953138 GCCAGCGACGATGATGAGG 60.953 63.158 15.87 0.00 0.00 3.86
3680 4957 1.953138 CCAGCGACGATGATGAGGC 60.953 63.158 15.87 0.00 0.00 4.70
3681 4958 1.227060 CAGCGACGATGATGAGGCA 60.227 57.895 7.46 0.00 0.00 4.75
3682 4959 0.599466 CAGCGACGATGATGAGGCAT 60.599 55.000 7.46 0.00 0.00 4.40
3683 4960 0.599466 AGCGACGATGATGAGGCATG 60.599 55.000 0.00 0.00 0.00 4.06
3684 4961 1.858041 CGACGATGATGAGGCATGC 59.142 57.895 9.90 9.90 0.00 4.06
3685 4962 1.563435 CGACGATGATGAGGCATGCC 61.563 60.000 30.12 30.12 0.00 4.40
3686 4963 0.533531 GACGATGATGAGGCATGCCA 60.534 55.000 37.18 19.62 38.92 4.92
3687 4964 0.534427 ACGATGATGAGGCATGCCAG 60.534 55.000 37.18 18.74 38.92 4.85
3688 4965 1.853114 CGATGATGAGGCATGCCAGC 61.853 60.000 37.18 27.62 38.92 4.85
3727 5004 4.394712 GTGAGGACAGGGCGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
3741 5019 2.050442 GGTGGCGCGTTCCTTTTG 60.050 61.111 8.43 0.00 0.00 2.44
3742 5020 2.729491 GTGGCGCGTTCCTTTTGC 60.729 61.111 8.43 0.00 0.00 3.68
3743 5021 3.212682 TGGCGCGTTCCTTTTGCA 61.213 55.556 8.43 0.00 0.00 4.08
3746 5024 1.148759 GGCGCGTTCCTTTTGCAAAA 61.149 50.000 22.61 22.61 0.00 2.44
3792 5073 2.285756 TCACGTAAAAGCCACTTTCACG 59.714 45.455 12.87 12.87 46.66 4.35
3794 5075 2.635444 CGTAAAAGCCACTTTCACGTG 58.365 47.619 9.94 9.94 39.42 4.49
3799 5080 5.607119 AAAAGCCACTTTCACGTGTATAG 57.393 39.130 16.51 13.17 31.99 1.31
3801 5082 5.395682 AAGCCACTTTCACGTGTATAGTA 57.604 39.130 16.51 0.00 33.07 1.82
3802 5083 5.395682 AGCCACTTTCACGTGTATAGTAA 57.604 39.130 16.51 0.00 33.07 2.24
3807 5088 6.959311 CCACTTTCACGTGTATAGTAATTTGC 59.041 38.462 16.51 0.00 33.07 3.68
3810 5091 8.175069 ACTTTCACGTGTATAGTAATTTGCATG 58.825 33.333 16.51 0.00 0.00 4.06
3811 5092 7.603963 TTCACGTGTATAGTAATTTGCATGT 57.396 32.000 16.51 0.00 0.00 3.21
3813 5094 8.880878 TCACGTGTATAGTAATTTGCATGTAT 57.119 30.769 16.51 0.00 0.00 2.29
3814 5095 8.760569 TCACGTGTATAGTAATTTGCATGTATG 58.239 33.333 16.51 0.00 0.00 2.39
3823 5104 6.830324 AGTAATTTGCATGTATGACATCTGGT 59.170 34.615 0.00 0.00 36.53 4.00
3825 5106 2.921821 TGCATGTATGACATCTGGTGG 58.078 47.619 0.00 0.00 36.53 4.61
3827 5108 2.421952 GCATGTATGACATCTGGTGGGT 60.422 50.000 0.00 0.00 36.53 4.51
3828 5109 3.470709 CATGTATGACATCTGGTGGGTC 58.529 50.000 0.00 0.00 36.53 4.46
3829 5110 1.837439 TGTATGACATCTGGTGGGTCC 59.163 52.381 0.00 0.00 0.00 4.46
3831 5112 1.371467 ATGACATCTGGTGGGTCCAA 58.629 50.000 0.00 0.00 46.59 3.53
3832 5113 0.400213 TGACATCTGGTGGGTCCAAC 59.600 55.000 0.00 0.00 46.59 3.77
3833 5114 0.673644 GACATCTGGTGGGTCCAACG 60.674 60.000 0.17 0.00 46.59 4.10
3834 5115 1.374947 CATCTGGTGGGTCCAACGT 59.625 57.895 0.17 0.00 46.59 3.99
3835 5116 0.955428 CATCTGGTGGGTCCAACGTG 60.955 60.000 0.17 0.00 46.59 4.49
3837 5118 1.597027 CTGGTGGGTCCAACGTGTC 60.597 63.158 0.17 0.00 46.59 3.67
3839 5120 1.597027 GGTGGGTCCAACGTGTCAG 60.597 63.158 0.00 0.00 35.97 3.51
3840 5121 2.110213 TGGGTCCAACGTGTCAGC 59.890 61.111 0.00 0.00 0.00 4.26
3841 5122 2.110213 GGGTCCAACGTGTCAGCA 59.890 61.111 0.00 0.00 0.00 4.41
3842 5123 1.525077 GGGTCCAACGTGTCAGCAA 60.525 57.895 0.00 0.00 0.00 3.91
3843 5124 1.098712 GGGTCCAACGTGTCAGCAAA 61.099 55.000 0.00 0.00 0.00 3.68
3845 5126 1.336755 GGTCCAACGTGTCAGCAAAAT 59.663 47.619 0.00 0.00 0.00 1.82
3847 5128 3.190535 GGTCCAACGTGTCAGCAAAATAT 59.809 43.478 0.00 0.00 0.00 1.28
3848 5129 4.403453 GTCCAACGTGTCAGCAAAATATC 58.597 43.478 0.00 0.00 0.00 1.63
3849 5130 4.068599 TCCAACGTGTCAGCAAAATATCA 58.931 39.130 0.00 0.00 0.00 2.15
3850 5131 4.083537 TCCAACGTGTCAGCAAAATATCAC 60.084 41.667 0.00 0.00 0.00 3.06
3851 5132 4.320129 CCAACGTGTCAGCAAAATATCACA 60.320 41.667 0.00 0.00 0.00 3.58
3853 5134 5.431420 ACGTGTCAGCAAAATATCACAAA 57.569 34.783 0.00 0.00 0.00 2.83
3854 5135 6.012658 ACGTGTCAGCAAAATATCACAAAT 57.987 33.333 0.00 0.00 0.00 2.32
3857 5138 8.888716 ACGTGTCAGCAAAATATCACAAATATA 58.111 29.630 0.00 0.00 0.00 0.86
3858 5139 9.882996 CGTGTCAGCAAAATATCACAAATATAT 57.117 29.630 0.00 0.00 0.00 0.86
3885 5166 9.866655 AATAGAATGAAAAATAGGCCATAGTGA 57.133 29.630 5.01 0.00 0.00 3.41
3886 5167 9.866655 ATAGAATGAAAAATAGGCCATAGTGAA 57.133 29.630 5.01 0.00 0.00 3.18
3887 5168 8.773033 AGAATGAAAAATAGGCCATAGTGAAT 57.227 30.769 5.01 0.00 0.00 2.57
3889 5170 6.959639 TGAAAAATAGGCCATAGTGAATCC 57.040 37.500 5.01 0.00 0.00 3.01
3892 5173 4.974645 AATAGGCCATAGTGAATCCGAA 57.025 40.909 5.01 0.00 0.00 4.30
3893 5174 2.622064 AGGCCATAGTGAATCCGAAC 57.378 50.000 5.01 0.00 0.00 3.95
3897 5178 3.069729 GGCCATAGTGAATCCGAACTAGT 59.930 47.826 0.00 0.00 32.62 2.57
3900 5181 5.661458 CCATAGTGAATCCGAACTAGTGTT 58.339 41.667 0.00 0.00 39.42 3.32
3901 5182 5.749109 CCATAGTGAATCCGAACTAGTGTTC 59.251 44.000 0.00 0.00 46.59 3.18
3912 5193 5.368256 GAACTAGTGTTCTCGGTCTAACA 57.632 43.478 0.00 0.00 46.56 2.41
3913 5194 5.373981 AACTAGTGTTCTCGGTCTAACAG 57.626 43.478 0.00 0.00 36.33 3.16
3914 5195 3.757493 ACTAGTGTTCTCGGTCTAACAGG 59.243 47.826 0.00 0.00 36.33 4.00
3916 5197 0.242825 TGTTCTCGGTCTAACAGGCG 59.757 55.000 0.00 0.00 32.11 5.52
3917 5198 0.243095 GTTCTCGGTCTAACAGGCGT 59.757 55.000 0.00 0.00 0.00 5.68
3918 5199 0.524862 TTCTCGGTCTAACAGGCGTC 59.475 55.000 0.00 0.00 0.00 5.19
3919 5200 1.139095 CTCGGTCTAACAGGCGTCC 59.861 63.158 0.00 0.00 0.00 4.79
3921 5202 2.508663 GGTCTAACAGGCGTCCGC 60.509 66.667 2.45 2.45 41.06 5.54
3922 5203 2.879462 GTCTAACAGGCGTCCGCG 60.879 66.667 0.00 0.00 43.06 6.46
3923 5204 4.124351 TCTAACAGGCGTCCGCGG 62.124 66.667 22.12 22.12 43.06 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 9.557338 CTGCTAATACATATTCTACGGTTCTAC 57.443 37.037 0.00 0.00 0.00 2.59
38 40 9.511272 TCTGCTAATACATATTCTACGGTTCTA 57.489 33.333 0.00 0.00 0.00 2.10
39 41 8.405418 TCTGCTAATACATATTCTACGGTTCT 57.595 34.615 0.00 0.00 0.00 3.01
40 42 9.640963 ATTCTGCTAATACATATTCTACGGTTC 57.359 33.333 0.00 0.00 0.00 3.62
41 43 9.640963 GATTCTGCTAATACATATTCTACGGTT 57.359 33.333 0.00 0.00 0.00 4.44
42 44 8.803235 TGATTCTGCTAATACATATTCTACGGT 58.197 33.333 0.00 0.00 0.00 4.83
43 45 9.639601 TTGATTCTGCTAATACATATTCTACGG 57.360 33.333 0.00 0.00 0.00 4.02
140 142 4.189231 AGTGGCATGGTCGTATTTAACTC 58.811 43.478 0.00 0.00 0.00 3.01
146 148 7.633193 TTTAATAAAGTGGCATGGTCGTATT 57.367 32.000 0.00 0.00 0.00 1.89
150 152 7.643764 CAGTTATTTAATAAAGTGGCATGGTCG 59.356 37.037 0.00 0.00 0.00 4.79
179 185 6.969828 ATAGAAAAGTGAGAAATGACGACC 57.030 37.500 0.00 0.00 0.00 4.79
359 368 3.555547 CGACGATTCACAAGATGGCATTA 59.444 43.478 0.00 0.00 0.00 1.90
367 376 1.268265 CGATGCGACGATTCACAAGA 58.732 50.000 0.00 0.00 35.09 3.02
484 502 3.036091 TGTAAGTACATCCCCTACCTGC 58.964 50.000 0.00 0.00 0.00 4.85
590 609 6.436847 TGTTTTTAAGGCAGGATGATGAATCA 59.563 34.615 0.00 0.00 39.69 2.57
594 613 5.951148 TCATGTTTTTAAGGCAGGATGATGA 59.049 36.000 0.00 0.00 39.69 2.92
598 617 5.902613 TCTCATGTTTTTAAGGCAGGATG 57.097 39.130 0.00 0.00 40.87 3.51
649 759 7.299134 AGAGGGAGTATTACACATTAGCTACT 58.701 38.462 0.00 0.00 0.00 2.57
674 784 9.706691 CAAAGTTATACTAAGGTTGAGACTTGA 57.293 33.333 0.00 0.00 0.00 3.02
675 785 9.490379 ACAAAGTTATACTAAGGTTGAGACTTG 57.510 33.333 0.00 0.00 0.00 3.16
744 865 3.818961 CGTGACAAATCATGTGCTTCT 57.181 42.857 0.00 0.00 44.12 2.85
775 896 2.598099 TCCTCGTGTGCCGGTGTA 60.598 61.111 1.90 0.00 37.11 2.90
777 898 2.149803 TTACTCCTCGTGTGCCGGTG 62.150 60.000 1.90 0.00 37.11 4.94
778 899 1.255667 ATTACTCCTCGTGTGCCGGT 61.256 55.000 1.90 0.00 37.11 5.28
779 900 0.742505 TATTACTCCTCGTGTGCCGG 59.257 55.000 0.00 0.00 37.11 6.13
780 901 2.223735 ACATATTACTCCTCGTGTGCCG 60.224 50.000 0.00 0.00 38.13 5.69
781 902 3.181479 TGACATATTACTCCTCGTGTGCC 60.181 47.826 0.00 0.00 0.00 5.01
782 903 4.041740 TGACATATTACTCCTCGTGTGC 57.958 45.455 0.00 0.00 0.00 4.57
783 904 4.098044 ACCTGACATATTACTCCTCGTGTG 59.902 45.833 0.00 0.00 0.00 3.82
852 979 0.395173 GTGGGCATTTATCCCGGTGT 60.395 55.000 0.00 0.00 46.92 4.16
854 981 1.153046 CGTGGGCATTTATCCCGGT 60.153 57.895 0.00 0.00 46.92 5.28
855 982 2.551912 GCGTGGGCATTTATCCCGG 61.552 63.158 0.00 0.00 46.92 5.73
856 983 2.551912 GGCGTGGGCATTTATCCCG 61.552 63.158 0.00 0.00 46.92 5.14
857 984 0.109723 TAGGCGTGGGCATTTATCCC 59.890 55.000 0.00 0.00 44.17 3.85
858 985 2.084546 GATAGGCGTGGGCATTTATCC 58.915 52.381 0.00 0.00 42.47 2.59
859 986 3.059352 AGATAGGCGTGGGCATTTATC 57.941 47.619 0.00 0.00 42.47 1.75
1056 1210 2.567497 GCCCACAGCAACAGCACAT 61.567 57.895 0.00 0.00 42.97 3.21
1277 1437 4.020617 CCTGAGCCTTCCACGCCA 62.021 66.667 0.00 0.00 0.00 5.69
1348 1518 1.591619 CATGCATGACACGCTCACTAG 59.408 52.381 22.59 0.00 0.00 2.57
1349 1519 1.643880 CATGCATGACACGCTCACTA 58.356 50.000 22.59 0.00 0.00 2.74
1350 1520 1.642037 GCATGCATGACACGCTCACT 61.642 55.000 30.64 0.00 33.76 3.41
1351 1521 1.226211 GCATGCATGACACGCTCAC 60.226 57.895 30.64 5.13 33.76 3.51
1352 1522 1.235948 TTGCATGCATGACACGCTCA 61.236 50.000 30.64 13.45 38.60 4.26
1435 1625 5.691754 AGAAAATAAAAGCAAACAAGGAGCG 59.308 36.000 0.00 0.00 0.00 5.03
1478 1703 7.517734 GCTCACATACGTAGAAAAACAGAACAA 60.518 37.037 0.08 0.00 0.00 2.83
1552 1789 4.467795 TGAAACAAGAAATTCCACCCACAA 59.532 37.500 0.00 0.00 0.00 3.33
1600 1837 1.226831 CAACGCACGGGCTTTTTGT 60.227 52.632 8.62 0.00 38.10 2.83
1863 2229 7.840342 AGATCTTTGTGTCACACTCATAATC 57.160 36.000 9.90 6.20 35.11 1.75
2049 2639 3.961414 GACTCGGGGGCCAAACCA 61.961 66.667 4.39 0.00 42.05 3.67
2154 2746 4.035017 ACAAAACGAAAGAAAGCATGACG 58.965 39.130 0.00 0.00 0.00 4.35
2232 3098 4.271533 TGTGTAGCGAAAACAAAGGTACTG 59.728 41.667 0.00 0.00 40.86 2.74
2383 3372 7.629157 TCCATAATTCTCTGTAACATCAACCA 58.371 34.615 0.00 0.00 0.00 3.67
2851 4101 0.460311 ATCGTCCGAGCCTAACAAGG 59.540 55.000 0.00 0.00 0.00 3.61
2864 4114 2.023673 TCATGGGCAATCAAATCGTCC 58.976 47.619 0.00 0.00 0.00 4.79
2890 4140 2.060383 TCTGGATGAGCGACCCCTG 61.060 63.158 0.00 0.00 0.00 4.45
3134 4384 9.248291 GTTATGACATTGAAAAACTGTTCACAT 57.752 29.630 0.00 0.00 37.24 3.21
3244 4518 8.189709 TGCAATGTAAATATTTATTTGCGCAA 57.810 26.923 29.70 21.02 41.90 4.85
3246 4520 8.630494 CATGCAATGTAAATATTTATTTGCGC 57.370 30.769 29.70 21.16 41.90 6.09
3295 4570 3.175929 GTCCACACGTTTCAAAAACCAG 58.824 45.455 0.00 0.00 0.00 4.00
3309 4584 9.039870 TCATTTCATTTAACAAAATGTCCACAC 57.960 29.630 9.87 0.00 39.96 3.82
3381 4656 3.058501 CACAATGTTTTCACGGACTACCC 60.059 47.826 0.00 0.00 0.00 3.69
3383 4658 5.202640 GTTCACAATGTTTTCACGGACTAC 58.797 41.667 0.00 0.00 0.00 2.73
3524 4801 5.891551 ACCACCAGTGTAATTGACTCTTTTT 59.108 36.000 0.00 0.00 29.24 1.94
3540 4817 1.072331 CCAAGTTCTAGCACCACCAGT 59.928 52.381 0.00 0.00 0.00 4.00
3541 4818 1.813513 CCAAGTTCTAGCACCACCAG 58.186 55.000 0.00 0.00 0.00 4.00
3542 4819 0.250727 GCCAAGTTCTAGCACCACCA 60.251 55.000 0.00 0.00 0.00 4.17
3543 4820 1.298859 CGCCAAGTTCTAGCACCACC 61.299 60.000 0.00 0.00 0.00 4.61
3544 4821 0.602905 ACGCCAAGTTCTAGCACCAC 60.603 55.000 0.00 0.00 0.00 4.16
3545 4822 0.970640 TACGCCAAGTTCTAGCACCA 59.029 50.000 0.00 0.00 0.00 4.17
3546 4823 2.088950 TTACGCCAAGTTCTAGCACC 57.911 50.000 0.00 0.00 0.00 5.01
3547 4824 3.682858 TCAATTACGCCAAGTTCTAGCAC 59.317 43.478 0.00 0.00 0.00 4.40
3548 4825 3.932822 TCAATTACGCCAAGTTCTAGCA 58.067 40.909 0.00 0.00 0.00 3.49
3549 4826 4.570772 TGATCAATTACGCCAAGTTCTAGC 59.429 41.667 0.00 0.00 0.00 3.42
3550 4827 5.812642 AGTGATCAATTACGCCAAGTTCTAG 59.187 40.000 0.00 0.00 0.00 2.43
3551 4828 5.730550 AGTGATCAATTACGCCAAGTTCTA 58.269 37.500 0.00 0.00 0.00 2.10
3552 4829 4.579869 AGTGATCAATTACGCCAAGTTCT 58.420 39.130 0.00 0.00 0.00 3.01
3553 4830 4.946784 AGTGATCAATTACGCCAAGTTC 57.053 40.909 0.00 0.00 0.00 3.01
3554 4831 5.705609 AAAGTGATCAATTACGCCAAGTT 57.294 34.783 9.10 0.00 0.00 2.66
3555 4832 5.938125 ACTAAAGTGATCAATTACGCCAAGT 59.062 36.000 9.10 3.98 0.00 3.16
3556 4833 6.422776 ACTAAAGTGATCAATTACGCCAAG 57.577 37.500 9.10 3.42 0.00 3.61
3572 4849 5.057149 CACCACAAGTTCTAGCACTAAAGT 58.943 41.667 0.00 0.00 0.00 2.66
3573 4850 5.057149 ACACCACAAGTTCTAGCACTAAAG 58.943 41.667 0.00 0.00 0.00 1.85
3574 4851 5.031066 ACACCACAAGTTCTAGCACTAAA 57.969 39.130 0.00 0.00 0.00 1.85
3575 4852 4.682778 ACACCACAAGTTCTAGCACTAA 57.317 40.909 0.00 0.00 0.00 2.24
3576 4853 4.585581 TGTACACCACAAGTTCTAGCACTA 59.414 41.667 0.00 0.00 32.95 2.74
3577 4854 3.386726 TGTACACCACAAGTTCTAGCACT 59.613 43.478 0.00 0.00 32.95 4.40
3578 4855 3.724374 TGTACACCACAAGTTCTAGCAC 58.276 45.455 0.00 0.00 32.95 4.40
3579 4856 4.566004 GATGTACACCACAAGTTCTAGCA 58.434 43.478 0.00 0.00 41.55 3.49
3580 4857 3.612860 CGATGTACACCACAAGTTCTAGC 59.387 47.826 0.00 0.00 41.55 3.42
3581 4858 5.055642 TCGATGTACACCACAAGTTCTAG 57.944 43.478 0.00 0.00 41.55 2.43
3582 4859 5.010314 ACTTCGATGTACACCACAAGTTCTA 59.990 40.000 0.00 0.00 41.55 2.10
3583 4860 4.202223 ACTTCGATGTACACCACAAGTTCT 60.202 41.667 0.00 0.00 41.55 3.01
3584 4861 4.056050 ACTTCGATGTACACCACAAGTTC 58.944 43.478 0.00 0.00 41.55 3.01
3585 4862 3.807622 CACTTCGATGTACACCACAAGTT 59.192 43.478 0.00 0.00 41.55 2.66
3586 4863 3.390135 CACTTCGATGTACACCACAAGT 58.610 45.455 0.00 1.60 41.55 3.16
3587 4864 2.736721 CCACTTCGATGTACACCACAAG 59.263 50.000 0.00 0.94 41.55 3.16
3588 4865 2.103432 ACCACTTCGATGTACACCACAA 59.897 45.455 0.00 0.00 41.55 3.33
3589 4866 1.689813 ACCACTTCGATGTACACCACA 59.310 47.619 0.00 0.00 42.69 4.17
3590 4867 2.066262 CACCACTTCGATGTACACCAC 58.934 52.381 0.00 0.00 0.00 4.16
3591 4868 1.606994 GCACCACTTCGATGTACACCA 60.607 52.381 0.00 0.00 0.00 4.17
3592 4869 1.076332 GCACCACTTCGATGTACACC 58.924 55.000 0.00 0.00 0.00 4.16
3593 4870 1.790755 TGCACCACTTCGATGTACAC 58.209 50.000 0.00 0.00 0.00 2.90
3594 4871 2.535012 TTGCACCACTTCGATGTACA 57.465 45.000 3.33 0.00 0.00 2.90
3595 4872 3.889196 TTTTGCACCACTTCGATGTAC 57.111 42.857 3.33 0.00 0.00 2.90
3596 4873 3.880490 AGTTTTTGCACCACTTCGATGTA 59.120 39.130 3.33 0.00 0.00 2.29
3597 4874 2.687935 AGTTTTTGCACCACTTCGATGT 59.312 40.909 0.00 0.00 0.00 3.06
3598 4875 3.354089 AGTTTTTGCACCACTTCGATG 57.646 42.857 0.00 0.00 0.00 3.84
3599 4876 3.490761 CCAAGTTTTTGCACCACTTCGAT 60.491 43.478 2.08 0.00 32.79 3.59
3600 4877 2.159310 CCAAGTTTTTGCACCACTTCGA 60.159 45.455 2.08 0.00 32.79 3.71
3601 4878 2.192624 CCAAGTTTTTGCACCACTTCG 58.807 47.619 2.08 0.00 32.79 3.79
3602 4879 1.933181 GCCAAGTTTTTGCACCACTTC 59.067 47.619 2.08 0.00 32.79 3.01
3603 4880 1.554617 AGCCAAGTTTTTGCACCACTT 59.445 42.857 0.00 0.00 32.79 3.16
3604 4881 1.136891 GAGCCAAGTTTTTGCACCACT 59.863 47.619 0.00 0.00 32.79 4.00
3605 4882 1.570813 GAGCCAAGTTTTTGCACCAC 58.429 50.000 0.00 0.00 32.79 4.16
3606 4883 0.102120 CGAGCCAAGTTTTTGCACCA 59.898 50.000 0.00 0.00 32.79 4.17
3607 4884 0.597377 CCGAGCCAAGTTTTTGCACC 60.597 55.000 0.00 0.00 32.79 5.01
3608 4885 0.597377 CCCGAGCCAAGTTTTTGCAC 60.597 55.000 0.00 0.00 32.79 4.57
3609 4886 1.739049 CCCGAGCCAAGTTTTTGCA 59.261 52.632 0.00 0.00 32.79 4.08
3610 4887 1.664649 GCCCGAGCCAAGTTTTTGC 60.665 57.895 0.00 0.00 32.79 3.68
3611 4888 1.371635 CGCCCGAGCCAAGTTTTTG 60.372 57.895 0.00 0.00 34.57 2.44
3612 4889 1.826487 ACGCCCGAGCCAAGTTTTT 60.826 52.632 0.00 0.00 34.57 1.94
3613 4890 2.203294 ACGCCCGAGCCAAGTTTT 60.203 55.556 0.00 0.00 34.57 2.43
3614 4891 2.978010 CACGCCCGAGCCAAGTTT 60.978 61.111 0.00 0.00 34.57 2.66
3619 4896 3.613877 TATTTGCACGCCCGAGCCA 62.614 57.895 7.57 0.00 34.57 4.75
3620 4897 2.822255 TATTTGCACGCCCGAGCC 60.822 61.111 7.57 0.00 34.57 4.70
3621 4898 2.403586 GTATTTGCACGCCCGAGC 59.596 61.111 3.18 3.18 0.00 5.03
3622 4899 2.701006 CGTATTTGCACGCCCGAG 59.299 61.111 0.00 0.00 34.78 4.63
3623 4900 2.816083 CCGTATTTGCACGCCCGA 60.816 61.111 0.00 0.00 40.59 5.14
3624 4901 3.122323 ACCGTATTTGCACGCCCG 61.122 61.111 0.00 0.00 40.59 6.13
3625 4902 1.858372 AACACCGTATTTGCACGCCC 61.858 55.000 0.00 0.00 40.59 6.13
3626 4903 0.797542 TAACACCGTATTTGCACGCC 59.202 50.000 0.00 0.00 40.59 5.68
3627 4904 1.461897 AGTAACACCGTATTTGCACGC 59.538 47.619 0.00 0.00 40.59 5.34
3628 4905 2.222420 CGAGTAACACCGTATTTGCACG 60.222 50.000 0.00 0.00 41.59 5.34
3629 4906 2.733026 ACGAGTAACACCGTATTTGCAC 59.267 45.455 0.00 0.00 37.23 4.57
3630 4907 2.732500 CACGAGTAACACCGTATTTGCA 59.267 45.455 0.00 0.00 37.23 4.08
3631 4908 2.733026 ACACGAGTAACACCGTATTTGC 59.267 45.455 0.00 0.00 37.23 3.68
3632 4909 4.977741 AACACGAGTAACACCGTATTTG 57.022 40.909 0.00 0.00 37.23 2.32
3633 4910 4.810491 ACAAACACGAGTAACACCGTATTT 59.190 37.500 0.00 0.00 36.06 1.40
3634 4911 4.370917 ACAAACACGAGTAACACCGTATT 58.629 39.130 0.00 0.00 37.23 1.89
3635 4912 3.981211 ACAAACACGAGTAACACCGTAT 58.019 40.909 0.00 0.00 37.23 3.06
3636 4913 3.435105 ACAAACACGAGTAACACCGTA 57.565 42.857 0.00 0.00 37.23 4.02
3637 4914 2.298411 ACAAACACGAGTAACACCGT 57.702 45.000 0.00 0.00 39.88 4.83
3638 4915 4.029418 CGTATACAAACACGAGTAACACCG 59.971 45.833 3.32 0.00 40.56 4.94
3639 4916 4.201523 GCGTATACAAACACGAGTAACACC 60.202 45.833 3.32 0.00 40.56 4.16
3640 4917 4.201523 GGCGTATACAAACACGAGTAACAC 60.202 45.833 3.32 0.00 40.56 3.32
3641 4918 3.919804 GGCGTATACAAACACGAGTAACA 59.080 43.478 3.32 0.00 40.56 2.41
3642 4919 3.919804 TGGCGTATACAAACACGAGTAAC 59.080 43.478 3.32 0.00 40.56 2.50
3643 4920 4.168014 CTGGCGTATACAAACACGAGTAA 58.832 43.478 3.32 0.00 40.56 2.24
3644 4921 3.761657 CTGGCGTATACAAACACGAGTA 58.238 45.455 3.32 0.00 40.56 2.59
3645 4922 2.602878 CTGGCGTATACAAACACGAGT 58.397 47.619 3.32 0.00 40.56 4.18
3646 4923 1.323534 GCTGGCGTATACAAACACGAG 59.676 52.381 3.32 0.00 40.56 4.18
3647 4924 1.352114 GCTGGCGTATACAAACACGA 58.648 50.000 3.32 0.00 40.56 4.35
3648 4925 0.024491 CGCTGGCGTATACAAACACG 59.976 55.000 6.83 0.00 41.04 4.49
3649 4926 1.060122 GTCGCTGGCGTATACAAACAC 59.940 52.381 14.55 0.00 40.74 3.32
3650 4927 1.352114 GTCGCTGGCGTATACAAACA 58.648 50.000 14.55 0.00 40.74 2.83
3651 4928 0.296642 CGTCGCTGGCGTATACAAAC 59.703 55.000 14.55 3.14 40.74 2.93
3652 4929 0.170784 TCGTCGCTGGCGTATACAAA 59.829 50.000 14.55 0.00 40.74 2.83
3653 4930 0.382873 ATCGTCGCTGGCGTATACAA 59.617 50.000 14.55 0.00 40.74 2.41
3654 4931 0.317519 CATCGTCGCTGGCGTATACA 60.318 55.000 14.55 0.00 40.74 2.29
3655 4932 0.040692 TCATCGTCGCTGGCGTATAC 60.041 55.000 14.55 5.19 40.74 1.47
3656 4933 0.879090 ATCATCGTCGCTGGCGTATA 59.121 50.000 14.55 2.15 40.74 1.47
3657 4934 0.664466 CATCATCGTCGCTGGCGTAT 60.664 55.000 14.55 4.93 40.74 3.06
3658 4935 1.299089 CATCATCGTCGCTGGCGTA 60.299 57.895 14.55 2.83 40.74 4.42
3659 4936 2.583319 CATCATCGTCGCTGGCGT 60.583 61.111 14.55 0.00 40.74 5.68
3660 4937 2.278792 TCATCATCGTCGCTGGCG 60.279 61.111 8.80 8.80 41.35 5.69
3661 4938 1.953138 CCTCATCATCGTCGCTGGC 60.953 63.158 0.00 0.00 0.00 4.85
3662 4939 1.953138 GCCTCATCATCGTCGCTGG 60.953 63.158 0.00 0.00 0.00 4.85
3663 4940 0.599466 ATGCCTCATCATCGTCGCTG 60.599 55.000 0.00 0.00 0.00 5.18
3664 4941 0.599466 CATGCCTCATCATCGTCGCT 60.599 55.000 0.00 0.00 0.00 4.93
3665 4942 1.858041 CATGCCTCATCATCGTCGC 59.142 57.895 0.00 0.00 0.00 5.19
3666 4943 1.563435 GGCATGCCTCATCATCGTCG 61.563 60.000 29.98 0.00 0.00 5.12
3667 4944 0.533531 TGGCATGCCTCATCATCGTC 60.534 55.000 35.53 6.75 36.94 4.20
3668 4945 0.534427 CTGGCATGCCTCATCATCGT 60.534 55.000 35.53 0.00 36.94 3.73
3669 4946 1.853114 GCTGGCATGCCTCATCATCG 61.853 60.000 35.53 14.85 36.94 3.84
3670 4947 1.957562 GCTGGCATGCCTCATCATC 59.042 57.895 35.53 8.69 36.94 2.92
3671 4948 4.175988 GCTGGCATGCCTCATCAT 57.824 55.556 35.53 0.00 36.94 2.45
3710 4987 4.394712 CACCCGCCCTGTCCTCAC 62.395 72.222 0.00 0.00 0.00 3.51
3723 5000 3.292159 AAAAGGAACGCGCCACCC 61.292 61.111 5.73 1.71 0.00 4.61
3724 5001 2.050442 CAAAAGGAACGCGCCACC 60.050 61.111 5.73 7.44 0.00 4.61
3725 5002 2.729491 GCAAAAGGAACGCGCCAC 60.729 61.111 5.73 0.00 0.00 5.01
3726 5003 2.284798 TTTGCAAAAGGAACGCGCCA 62.285 50.000 10.02 0.00 0.00 5.69
3727 5004 1.148759 TTTTGCAAAAGGAACGCGCC 61.149 50.000 20.46 0.00 0.00 6.53
3728 5005 0.647925 TTTTTGCAAAAGGAACGCGC 59.352 45.000 22.78 0.00 0.00 6.86
3766 5044 5.124138 TGAAAGTGGCTTTTACGTGAGAAAA 59.876 36.000 0.00 0.00 33.49 2.29
3768 5046 4.034742 GTGAAAGTGGCTTTTACGTGAGAA 59.965 41.667 0.00 0.00 33.49 2.87
3770 5048 3.873529 GTGAAAGTGGCTTTTACGTGAG 58.126 45.455 0.00 0.00 33.49 3.51
3775 5053 3.685836 ACACGTGAAAGTGGCTTTTAC 57.314 42.857 25.01 6.49 45.80 2.01
3776 5054 6.225318 ACTATACACGTGAAAGTGGCTTTTA 58.775 36.000 25.01 0.00 45.80 1.52
3777 5055 5.061179 ACTATACACGTGAAAGTGGCTTTT 58.939 37.500 25.01 0.00 45.80 2.27
3778 5056 4.638304 ACTATACACGTGAAAGTGGCTTT 58.362 39.130 25.01 0.00 45.80 3.51
3779 5057 4.267349 ACTATACACGTGAAAGTGGCTT 57.733 40.909 25.01 0.00 45.80 4.35
3781 5059 6.657836 AATTACTATACACGTGAAAGTGGC 57.342 37.500 25.01 0.00 45.80 5.01
3786 5064 8.035165 ACATGCAAATTACTATACACGTGAAA 57.965 30.769 25.01 10.36 0.00 2.69
3799 5080 6.914215 CACCAGATGTCATACATGCAAATTAC 59.086 38.462 0.00 0.00 39.27 1.89
3801 5082 5.163488 CCACCAGATGTCATACATGCAAATT 60.163 40.000 0.00 0.00 39.27 1.82
3802 5083 4.340097 CCACCAGATGTCATACATGCAAAT 59.660 41.667 0.00 0.00 39.27 2.32
3807 5088 3.470709 GACCCACCAGATGTCATACATG 58.529 50.000 0.00 0.00 39.27 3.21
3810 5091 1.837439 TGGACCCACCAGATGTCATAC 59.163 52.381 0.00 0.00 44.64 2.39
3811 5092 2.262266 TGGACCCACCAGATGTCATA 57.738 50.000 0.00 0.00 44.64 2.15
3813 5094 4.658427 TGGACCCACCAGATGTCA 57.342 55.556 0.00 0.00 44.64 3.58
3823 5104 2.110213 GCTGACACGTTGGACCCA 59.890 61.111 0.00 0.00 0.00 4.51
3825 5106 0.736053 TTTTGCTGACACGTTGGACC 59.264 50.000 0.00 0.00 0.00 4.46
3827 5108 4.068599 TGATATTTTGCTGACACGTTGGA 58.931 39.130 0.00 0.00 0.00 3.53
3828 5109 4.158384 GTGATATTTTGCTGACACGTTGG 58.842 43.478 0.00 0.00 0.00 3.77
3829 5110 4.782156 TGTGATATTTTGCTGACACGTTG 58.218 39.130 0.00 0.00 0.00 4.10
3831 5112 5.431420 TTTGTGATATTTTGCTGACACGT 57.569 34.783 0.00 0.00 0.00 4.49
3832 5113 9.882996 ATATATTTGTGATATTTTGCTGACACG 57.117 29.630 0.00 0.00 0.00 4.49
3859 5140 9.866655 TCACTATGGCCTATTTTTCATTCTATT 57.133 29.630 3.32 0.00 0.00 1.73
3862 5143 8.773033 ATTCACTATGGCCTATTTTTCATTCT 57.227 30.769 3.32 0.00 0.00 2.40
3863 5144 8.084684 GGATTCACTATGGCCTATTTTTCATTC 58.915 37.037 3.32 0.00 0.00 2.67
3864 5145 7.255590 CGGATTCACTATGGCCTATTTTTCATT 60.256 37.037 3.32 0.00 0.00 2.57
3865 5146 6.207417 CGGATTCACTATGGCCTATTTTTCAT 59.793 38.462 3.32 0.00 0.00 2.57
3867 5148 5.763204 TCGGATTCACTATGGCCTATTTTTC 59.237 40.000 3.32 0.00 0.00 2.29
3868 5149 5.690865 TCGGATTCACTATGGCCTATTTTT 58.309 37.500 3.32 0.00 0.00 1.94
3869 5150 5.304686 TCGGATTCACTATGGCCTATTTT 57.695 39.130 3.32 0.00 0.00 1.82
3870 5151 4.974645 TCGGATTCACTATGGCCTATTT 57.025 40.909 3.32 0.00 0.00 1.40
3871 5152 4.348168 AGTTCGGATTCACTATGGCCTATT 59.652 41.667 3.32 0.00 0.00 1.73
3873 5154 3.305720 AGTTCGGATTCACTATGGCCTA 58.694 45.455 3.32 0.00 0.00 3.93
3874 5155 2.119495 AGTTCGGATTCACTATGGCCT 58.881 47.619 3.32 0.00 0.00 5.19
3875 5156 2.622064 AGTTCGGATTCACTATGGCC 57.378 50.000 0.00 0.00 0.00 5.36
3877 5158 5.263968 ACACTAGTTCGGATTCACTATGG 57.736 43.478 0.00 0.00 0.00 2.74
3878 5159 6.814076 GAACACTAGTTCGGATTCACTATG 57.186 41.667 0.00 0.00 44.11 2.23
3892 5173 3.757493 CCTGTTAGACCGAGAACACTAGT 59.243 47.826 0.00 0.00 32.31 2.57
3893 5174 3.427773 GCCTGTTAGACCGAGAACACTAG 60.428 52.174 0.00 0.00 32.31 2.57
3897 5178 0.242825 CGCCTGTTAGACCGAGAACA 59.757 55.000 0.00 0.00 34.49 3.18
3900 5181 1.310933 GGACGCCTGTTAGACCGAGA 61.311 60.000 0.00 0.00 0.00 4.04
3901 5182 1.139095 GGACGCCTGTTAGACCGAG 59.861 63.158 0.00 0.00 0.00 4.63
3903 5184 2.202570 CGGACGCCTGTTAGACCG 60.203 66.667 0.00 0.00 38.99 4.79



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.