Multiple sequence alignment - TraesCS2A01G518800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G518800 chr2A 100.000 2401 0 0 929 3329 742174688 742177088 0.000000e+00 4434.0
1 TraesCS2A01G518800 chr2A 100.000 719 0 0 1 719 742173760 742174478 0.000000e+00 1328.0
2 TraesCS2A01G518800 chr2A 100.000 213 0 0 1 213 80911654 80911442 8.660000e-106 394.0
3 TraesCS2A01G518800 chr2A 98.039 51 1 0 2946 2996 742176657 742176707 4.570000e-14 89.8
4 TraesCS2A01G518800 chr2A 98.039 51 1 0 2898 2948 742176705 742176755 4.570000e-14 89.8
5 TraesCS2A01G518800 chr2D 94.665 1762 59 20 1012 2751 609492590 609494338 0.000000e+00 2700.0
6 TraesCS2A01G518800 chr2D 87.711 415 21 12 300 712 609492153 609492539 1.090000e-124 457.0
7 TraesCS2A01G518800 chr2D 93.004 243 17 0 3087 3329 609494744 609494986 4.080000e-94 355.0
8 TraesCS2A01G518800 chr2D 90.000 90 8 1 2854 2943 609494344 609494432 7.550000e-22 115.0
9 TraesCS2A01G518800 chr2B 93.504 1755 74 18 983 2717 743799537 743801271 0.000000e+00 2573.0
10 TraesCS2A01G518800 chr2B 89.960 498 34 12 224 712 743799020 743799510 2.180000e-176 628.0
11 TraesCS2A01G518800 chr2B 100.000 213 0 0 1 213 726540805 726540593 8.660000e-106 394.0
12 TraesCS2A01G518800 chr2B 87.923 207 23 2 3063 3268 743801535 743801740 3.320000e-60 243.0
13 TraesCS2A01G518800 chr2B 87.940 199 22 2 3131 3329 743801745 743801941 2.000000e-57 233.0
14 TraesCS2A01G518800 chrUn 100.000 213 0 0 1 213 353139365 353139153 8.660000e-106 394.0
15 TraesCS2A01G518800 chr1B 100.000 213 0 0 1 213 512154749 512154961 8.660000e-106 394.0
16 TraesCS2A01G518800 chr5A 99.531 213 1 0 1 213 626124121 626124333 4.030000e-104 388.0
17 TraesCS2A01G518800 chr7B 98.913 184 2 0 1 184 44812609 44812792 2.480000e-86 329.0
18 TraesCS2A01G518800 chr4D 83.224 304 47 4 3026 3327 467970925 467971226 3.270000e-70 276.0
19 TraesCS2A01G518800 chr4B 85.802 162 20 3 3042 3202 586242500 586242659 5.710000e-38 169.0
20 TraesCS2A01G518800 chr1D 76.378 127 30 0 2805 2931 390552544 390552418 5.960000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G518800 chr2A 742173760 742177088 3328 False 1485.40 4434 99.01950 1 3329 4 chr2A.!!$F1 3328
1 TraesCS2A01G518800 chr2D 609492153 609494986 2833 False 906.75 2700 91.34500 300 3329 4 chr2D.!!$F1 3029
2 TraesCS2A01G518800 chr2B 743799020 743801941 2921 False 919.25 2573 89.83175 224 3329 4 chr2B.!!$F1 3105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.035458 CCAACTTGACTTCCTCCGCT 59.965 55.0 0.0 0.0 0.0 5.52 F
429 430 0.105964 TCCCGATGAAGAGGAGGAGG 60.106 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2329 0.731514 CCAAGCTCAAATGCACAGCG 60.732 55.000 0.00 0.0 38.26 5.18 R
2353 2399 1.338200 ACTAGGGAAAACTGCAGAGCG 60.338 52.381 23.35 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.806949 TGGTTAGCCTCACCAATTTCT 57.193 42.857 0.00 0.00 41.58 2.52
26 27 4.112634 TGGTTAGCCTCACCAATTTCTT 57.887 40.909 0.00 0.00 41.58 2.52
27 28 4.079253 TGGTTAGCCTCACCAATTTCTTC 58.921 43.478 0.00 0.00 41.58 2.87
28 29 4.079253 GGTTAGCCTCACCAATTTCTTCA 58.921 43.478 0.00 0.00 34.04 3.02
29 30 4.522789 GGTTAGCCTCACCAATTTCTTCAA 59.477 41.667 0.00 0.00 34.04 2.69
30 31 5.461526 GTTAGCCTCACCAATTTCTTCAAC 58.538 41.667 0.00 0.00 0.00 3.18
31 32 3.837355 AGCCTCACCAATTTCTTCAACT 58.163 40.909 0.00 0.00 0.00 3.16
32 33 3.823304 AGCCTCACCAATTTCTTCAACTC 59.177 43.478 0.00 0.00 0.00 3.01
33 34 3.057245 GCCTCACCAATTTCTTCAACTCC 60.057 47.826 0.00 0.00 0.00 3.85
34 35 3.189287 CCTCACCAATTTCTTCAACTCCG 59.811 47.826 0.00 0.00 0.00 4.63
35 36 3.815401 CTCACCAATTTCTTCAACTCCGT 59.185 43.478 0.00 0.00 0.00 4.69
36 37 4.204012 TCACCAATTTCTTCAACTCCGTT 58.796 39.130 0.00 0.00 0.00 4.44
37 38 4.642885 TCACCAATTTCTTCAACTCCGTTT 59.357 37.500 0.00 0.00 0.00 3.60
38 39 5.823570 TCACCAATTTCTTCAACTCCGTTTA 59.176 36.000 0.00 0.00 0.00 2.01
39 40 6.319152 TCACCAATTTCTTCAACTCCGTTTAA 59.681 34.615 0.00 0.00 0.00 1.52
40 41 6.975772 CACCAATTTCTTCAACTCCGTTTAAA 59.024 34.615 0.00 0.00 0.00 1.52
41 42 7.489757 CACCAATTTCTTCAACTCCGTTTAAAA 59.510 33.333 0.00 0.00 0.00 1.52
42 43 8.201464 ACCAATTTCTTCAACTCCGTTTAAAAT 58.799 29.630 0.00 0.00 0.00 1.82
43 44 9.685828 CCAATTTCTTCAACTCCGTTTAAAATA 57.314 29.630 0.00 0.00 0.00 1.40
54 55 9.783256 AACTCCGTTTAAAATATTCAATACTGC 57.217 29.630 0.00 0.00 0.00 4.40
55 56 8.403236 ACTCCGTTTAAAATATTCAATACTGCC 58.597 33.333 0.00 0.00 0.00 4.85
56 57 8.514330 TCCGTTTAAAATATTCAATACTGCCT 57.486 30.769 0.00 0.00 0.00 4.75
57 58 8.962679 TCCGTTTAAAATATTCAATACTGCCTT 58.037 29.630 0.00 0.00 0.00 4.35
64 65 9.686683 AAAATATTCAATACTGCCTTAGTCACT 57.313 29.630 0.00 0.00 40.89 3.41
65 66 9.686683 AAATATTCAATACTGCCTTAGTCACTT 57.313 29.630 0.00 0.00 40.89 3.16
66 67 8.894768 ATATTCAATACTGCCTTAGTCACTTC 57.105 34.615 0.00 0.00 40.89 3.01
67 68 6.360370 TTCAATACTGCCTTAGTCACTTCT 57.640 37.500 0.00 0.00 40.89 2.85
68 69 6.360370 TCAATACTGCCTTAGTCACTTCTT 57.640 37.500 0.00 0.00 40.89 2.52
69 70 6.398918 TCAATACTGCCTTAGTCACTTCTTC 58.601 40.000 0.00 0.00 40.89 2.87
70 71 3.686916 ACTGCCTTAGTCACTTCTTCC 57.313 47.619 0.00 0.00 33.17 3.46
71 72 2.303311 ACTGCCTTAGTCACTTCTTCCC 59.697 50.000 0.00 0.00 33.17 3.97
72 73 1.628846 TGCCTTAGTCACTTCTTCCCC 59.371 52.381 0.00 0.00 0.00 4.81
73 74 1.628846 GCCTTAGTCACTTCTTCCCCA 59.371 52.381 0.00 0.00 0.00 4.96
74 75 2.615747 GCCTTAGTCACTTCTTCCCCAC 60.616 54.545 0.00 0.00 0.00 4.61
75 76 2.637872 CCTTAGTCACTTCTTCCCCACA 59.362 50.000 0.00 0.00 0.00 4.17
76 77 3.264450 CCTTAGTCACTTCTTCCCCACAT 59.736 47.826 0.00 0.00 0.00 3.21
77 78 4.469945 CCTTAGTCACTTCTTCCCCACATA 59.530 45.833 0.00 0.00 0.00 2.29
78 79 5.131142 CCTTAGTCACTTCTTCCCCACATAT 59.869 44.000 0.00 0.00 0.00 1.78
79 80 4.494091 AGTCACTTCTTCCCCACATATG 57.506 45.455 0.00 0.00 0.00 1.78
80 81 3.846588 AGTCACTTCTTCCCCACATATGT 59.153 43.478 1.41 1.41 0.00 2.29
81 82 4.080863 AGTCACTTCTTCCCCACATATGTC 60.081 45.833 5.07 0.00 0.00 3.06
82 83 3.199946 TCACTTCTTCCCCACATATGTCC 59.800 47.826 5.07 0.00 0.00 4.02
83 84 2.509964 ACTTCTTCCCCACATATGTCCC 59.490 50.000 5.07 0.00 0.00 4.46
84 85 2.278657 TCTTCCCCACATATGTCCCA 57.721 50.000 5.07 0.00 0.00 4.37
85 86 2.567862 TCTTCCCCACATATGTCCCAA 58.432 47.619 5.07 0.00 0.00 4.12
86 87 3.130450 TCTTCCCCACATATGTCCCAAT 58.870 45.455 5.07 0.00 0.00 3.16
87 88 3.117550 TCTTCCCCACATATGTCCCAATG 60.118 47.826 5.07 0.00 0.00 2.82
88 89 2.497368 TCCCCACATATGTCCCAATGA 58.503 47.619 5.07 0.00 0.00 2.57
89 90 2.174639 TCCCCACATATGTCCCAATGAC 59.825 50.000 5.07 0.00 44.72 3.06
115 116 2.153366 AAAAATGTGCTGGAAAGCCG 57.847 45.000 0.00 0.00 36.79 5.52
116 117 1.039856 AAAATGTGCTGGAAAGCCGT 58.960 45.000 0.00 0.00 36.79 5.68
117 118 0.598065 AAATGTGCTGGAAAGCCGTC 59.402 50.000 0.00 0.00 36.79 4.79
118 119 0.537143 AATGTGCTGGAAAGCCGTCA 60.537 50.000 0.00 0.00 36.79 4.35
119 120 0.957395 ATGTGCTGGAAAGCCGTCAG 60.957 55.000 0.00 0.00 36.79 3.51
120 121 2.032528 TGCTGGAAAGCCGTCAGG 59.967 61.111 0.00 0.00 41.62 3.86
121 122 2.032681 GCTGGAAAGCCGTCAGGT 59.967 61.111 0.00 0.00 40.50 4.00
122 123 2.035442 GCTGGAAAGCCGTCAGGTC 61.035 63.158 0.00 0.00 40.50 3.85
123 124 1.376037 CTGGAAAGCCGTCAGGTCC 60.376 63.158 0.00 0.00 40.50 4.46
124 125 1.831652 CTGGAAAGCCGTCAGGTCCT 61.832 60.000 0.00 0.00 40.50 3.85
125 126 1.376037 GGAAAGCCGTCAGGTCCTG 60.376 63.158 13.21 13.21 40.50 3.86
126 127 1.376037 GAAAGCCGTCAGGTCCTGG 60.376 63.158 19.11 4.12 40.50 4.45
132 133 4.021925 GTCAGGTCCTGGCGCCTT 62.022 66.667 29.70 3.05 31.73 4.35
133 134 4.020617 TCAGGTCCTGGCGCCTTG 62.021 66.667 29.70 19.84 31.73 3.61
140 141 4.697756 CTGGCGCCTTGGTCGGAA 62.698 66.667 29.70 1.91 0.00 4.30
141 142 4.257654 TGGCGCCTTGGTCGGAAA 62.258 61.111 29.70 0.00 0.00 3.13
142 143 3.733960 GGCGCCTTGGTCGGAAAC 61.734 66.667 22.15 0.00 0.00 2.78
143 144 2.975799 GCGCCTTGGTCGGAAACA 60.976 61.111 0.00 0.00 0.00 2.83
144 145 2.332654 GCGCCTTGGTCGGAAACAT 61.333 57.895 0.00 0.00 0.00 2.71
145 146 1.862602 GCGCCTTGGTCGGAAACATT 61.863 55.000 0.00 0.00 0.00 2.71
146 147 0.596082 CGCCTTGGTCGGAAACATTT 59.404 50.000 0.00 0.00 0.00 2.32
147 148 1.665735 CGCCTTGGTCGGAAACATTTG 60.666 52.381 0.00 0.00 0.00 2.32
148 149 1.336795 GCCTTGGTCGGAAACATTTGG 60.337 52.381 0.00 0.00 0.00 3.28
149 150 2.235016 CCTTGGTCGGAAACATTTGGA 58.765 47.619 0.00 0.00 0.00 3.53
150 151 2.625790 CCTTGGTCGGAAACATTTGGAA 59.374 45.455 0.00 0.00 0.00 3.53
151 152 3.552068 CCTTGGTCGGAAACATTTGGAAC 60.552 47.826 0.00 0.00 0.00 3.62
152 153 2.656002 TGGTCGGAAACATTTGGAACA 58.344 42.857 0.00 0.00 0.00 3.18
166 167 2.665165 TGGAACAATGCCAACTTGACT 58.335 42.857 0.00 0.00 31.92 3.41
167 168 3.030291 TGGAACAATGCCAACTTGACTT 58.970 40.909 0.00 0.00 31.92 3.01
168 169 3.068024 TGGAACAATGCCAACTTGACTTC 59.932 43.478 0.00 0.00 31.92 3.01
169 170 3.552890 GGAACAATGCCAACTTGACTTCC 60.553 47.826 0.00 0.00 0.00 3.46
170 171 2.949447 ACAATGCCAACTTGACTTCCT 58.051 42.857 0.00 0.00 0.00 3.36
171 172 2.887152 ACAATGCCAACTTGACTTCCTC 59.113 45.455 0.00 0.00 0.00 3.71
172 173 2.206576 ATGCCAACTTGACTTCCTCC 57.793 50.000 0.00 0.00 0.00 4.30
173 174 0.250295 TGCCAACTTGACTTCCTCCG 60.250 55.000 0.00 0.00 0.00 4.63
174 175 1.578206 GCCAACTTGACTTCCTCCGC 61.578 60.000 0.00 0.00 0.00 5.54
175 176 0.035458 CCAACTTGACTTCCTCCGCT 59.965 55.000 0.00 0.00 0.00 5.52
176 177 1.543429 CCAACTTGACTTCCTCCGCTT 60.543 52.381 0.00 0.00 0.00 4.68
177 178 2.222027 CAACTTGACTTCCTCCGCTTT 58.778 47.619 0.00 0.00 0.00 3.51
178 179 3.399330 CAACTTGACTTCCTCCGCTTTA 58.601 45.455 0.00 0.00 0.00 1.85
179 180 3.983044 ACTTGACTTCCTCCGCTTTAT 57.017 42.857 0.00 0.00 0.00 1.40
180 181 5.175859 CAACTTGACTTCCTCCGCTTTATA 58.824 41.667 0.00 0.00 0.00 0.98
181 182 4.756502 ACTTGACTTCCTCCGCTTTATAC 58.243 43.478 0.00 0.00 0.00 1.47
182 183 3.431922 TGACTTCCTCCGCTTTATACG 57.568 47.619 0.00 0.00 0.00 3.06
188 189 4.097828 CCGCTTTATACGGTGCGT 57.902 55.556 8.63 0.00 45.70 5.24
189 190 2.375981 CCGCTTTATACGGTGCGTT 58.624 52.632 8.63 0.00 45.70 4.84
190 191 0.722848 CCGCTTTATACGGTGCGTTT 59.277 50.000 8.63 0.00 45.70 3.60
191 192 1.925847 CCGCTTTATACGGTGCGTTTA 59.074 47.619 8.63 0.00 45.70 2.01
192 193 2.034339 CCGCTTTATACGGTGCGTTTAG 60.034 50.000 8.63 0.00 45.70 1.85
193 194 2.599973 CGCTTTATACGGTGCGTTTAGT 59.400 45.455 2.09 0.00 42.93 2.24
194 195 3.540744 CGCTTTATACGGTGCGTTTAGTG 60.541 47.826 2.09 0.00 42.93 2.74
195 196 3.613737 GCTTTATACGGTGCGTTTAGTGA 59.386 43.478 0.00 0.00 41.54 3.41
196 197 4.269363 GCTTTATACGGTGCGTTTAGTGAT 59.731 41.667 0.00 0.00 41.54 3.06
197 198 5.459762 GCTTTATACGGTGCGTTTAGTGATA 59.540 40.000 0.00 0.00 41.54 2.15
198 199 6.345565 GCTTTATACGGTGCGTTTAGTGATAG 60.346 42.308 0.00 0.00 41.54 2.08
199 200 2.288961 ACGGTGCGTTTAGTGATAGG 57.711 50.000 0.00 0.00 36.35 2.57
200 201 1.547372 ACGGTGCGTTTAGTGATAGGT 59.453 47.619 0.00 0.00 36.35 3.08
201 202 2.028748 ACGGTGCGTTTAGTGATAGGTT 60.029 45.455 0.00 0.00 36.35 3.50
202 203 2.601763 CGGTGCGTTTAGTGATAGGTTC 59.398 50.000 0.00 0.00 0.00 3.62
203 204 3.592059 GGTGCGTTTAGTGATAGGTTCA 58.408 45.455 0.00 0.00 0.00 3.18
204 205 4.189231 GGTGCGTTTAGTGATAGGTTCAT 58.811 43.478 0.00 0.00 36.54 2.57
205 206 4.270325 GGTGCGTTTAGTGATAGGTTCATC 59.730 45.833 0.00 0.00 36.54 2.92
206 207 5.109903 GTGCGTTTAGTGATAGGTTCATCT 58.890 41.667 0.00 0.00 36.54 2.90
207 208 5.232414 GTGCGTTTAGTGATAGGTTCATCTC 59.768 44.000 0.00 0.00 36.54 2.75
208 209 5.127194 TGCGTTTAGTGATAGGTTCATCTCT 59.873 40.000 0.00 0.00 36.54 3.10
209 210 5.460419 GCGTTTAGTGATAGGTTCATCTCTG 59.540 44.000 0.00 0.00 36.54 3.35
210 211 5.980116 CGTTTAGTGATAGGTTCATCTCTGG 59.020 44.000 0.00 0.00 36.54 3.86
211 212 6.405953 CGTTTAGTGATAGGTTCATCTCTGGT 60.406 42.308 0.00 0.00 36.54 4.00
212 213 6.471233 TTAGTGATAGGTTCATCTCTGGTG 57.529 41.667 0.00 0.00 36.54 4.17
213 214 3.133721 AGTGATAGGTTCATCTCTGGTGC 59.866 47.826 0.00 0.00 36.54 5.01
214 215 3.133721 GTGATAGGTTCATCTCTGGTGCT 59.866 47.826 0.00 0.00 36.54 4.40
215 216 3.386078 TGATAGGTTCATCTCTGGTGCTC 59.614 47.826 0.00 0.00 0.00 4.26
216 217 1.949799 AGGTTCATCTCTGGTGCTCT 58.050 50.000 0.00 0.00 0.00 4.09
217 218 1.830477 AGGTTCATCTCTGGTGCTCTC 59.170 52.381 0.00 0.00 0.00 3.20
218 219 1.552337 GGTTCATCTCTGGTGCTCTCA 59.448 52.381 0.00 0.00 0.00 3.27
219 220 2.170187 GGTTCATCTCTGGTGCTCTCAT 59.830 50.000 0.00 0.00 0.00 2.90
220 221 3.386078 GGTTCATCTCTGGTGCTCTCATA 59.614 47.826 0.00 0.00 0.00 2.15
221 222 4.141846 GGTTCATCTCTGGTGCTCTCATAA 60.142 45.833 0.00 0.00 0.00 1.90
222 223 5.423015 GTTCATCTCTGGTGCTCTCATAAA 58.577 41.667 0.00 0.00 0.00 1.40
223 224 5.883685 TCATCTCTGGTGCTCTCATAAAT 57.116 39.130 0.00 0.00 0.00 1.40
224 225 6.983906 TCATCTCTGGTGCTCTCATAAATA 57.016 37.500 0.00 0.00 0.00 1.40
225 226 7.365497 TCATCTCTGGTGCTCTCATAAATAA 57.635 36.000 0.00 0.00 0.00 1.40
226 227 7.971201 TCATCTCTGGTGCTCTCATAAATAAT 58.029 34.615 0.00 0.00 0.00 1.28
227 228 8.435187 TCATCTCTGGTGCTCTCATAAATAATT 58.565 33.333 0.00 0.00 0.00 1.40
228 229 9.716531 CATCTCTGGTGCTCTCATAAATAATTA 57.283 33.333 0.00 0.00 0.00 1.40
232 233 9.288576 TCTGGTGCTCTCATAAATAATTATTGG 57.711 33.333 11.42 5.21 29.08 3.16
233 234 8.408043 TGGTGCTCTCATAAATAATTATTGGG 57.592 34.615 11.42 0.57 29.08 4.12
234 235 7.451255 TGGTGCTCTCATAAATAATTATTGGGG 59.549 37.037 11.42 5.15 29.08 4.96
235 236 7.093771 GGTGCTCTCATAAATAATTATTGGGGG 60.094 40.741 11.42 1.48 29.08 5.40
236 237 6.437162 TGCTCTCATAAATAATTATTGGGGGC 59.563 38.462 11.86 11.86 32.05 5.80
237 238 6.437162 GCTCTCATAAATAATTATTGGGGGCA 59.563 38.462 13.34 0.00 31.88 5.36
238 239 7.363268 GCTCTCATAAATAATTATTGGGGGCAG 60.363 40.741 13.34 7.42 31.88 4.85
239 240 6.437162 TCTCATAAATAATTATTGGGGGCAGC 59.563 38.462 11.42 0.00 29.08 5.25
240 241 6.080682 TCATAAATAATTATTGGGGGCAGCA 58.919 36.000 11.42 0.00 29.08 4.41
247 248 3.690624 TATTGGGGGCAGCACAGGTTC 62.691 57.143 0.00 0.00 0.00 3.62
288 289 2.360350 ACTGATGCGGCCCAACAG 60.360 61.111 21.76 21.76 46.43 3.16
341 342 1.141234 GCTCGCTAAACCCGCTACT 59.859 57.895 0.00 0.00 0.00 2.57
428 429 1.133637 TCTCCCGATGAAGAGGAGGAG 60.134 57.143 5.50 0.00 46.07 3.69
429 430 0.105964 TCCCGATGAAGAGGAGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
430 431 0.105964 CCCGATGAAGAGGAGGAGGA 60.106 60.000 0.00 0.00 0.00 3.71
578 593 4.527583 GCCCAGAGCCGAGCAGAG 62.528 72.222 0.00 0.00 34.35 3.35
579 594 4.527583 CCCAGAGCCGAGCAGAGC 62.528 72.222 0.00 0.00 0.00 4.09
580 595 3.767806 CCAGAGCCGAGCAGAGCA 61.768 66.667 0.00 0.00 0.00 4.26
581 596 2.202770 CAGAGCCGAGCAGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
582 597 4.146075 AGAGCCGAGCAGAGCAGC 62.146 66.667 0.00 0.00 0.00 5.25
617 632 1.974875 CTTAAACCCACCCCACCGC 60.975 63.158 0.00 0.00 0.00 5.68
618 633 3.510559 TTAAACCCACCCCACCGCC 62.511 63.158 0.00 0.00 0.00 6.13
637 652 2.997897 ACCACCCCGCTCTCTCAC 60.998 66.667 0.00 0.00 0.00 3.51
673 701 4.527583 GCTCCGGGCTCAGCTCAG 62.528 72.222 0.00 0.00 38.06 3.35
674 702 4.527583 CTCCGGGCTCAGCTCAGC 62.528 72.222 0.00 0.00 38.84 4.26
676 704 4.527583 CCGGGCTCAGCTCAGCTC 62.528 72.222 10.24 3.74 36.40 4.09
706 734 2.125310 CCATCGCCAGTAACCGCA 60.125 61.111 0.00 0.00 0.00 5.69
712 740 2.674754 CCAGTAACCGCACCCCAT 59.325 61.111 0.00 0.00 0.00 4.00
714 742 1.451387 CAGTAACCGCACCCCATCC 60.451 63.158 0.00 0.00 0.00 3.51
716 744 2.611172 TAACCGCACCCCATCCCA 60.611 61.111 0.00 0.00 0.00 4.37
717 745 2.974041 TAACCGCACCCCATCCCAC 61.974 63.158 0.00 0.00 0.00 4.61
1855 1892 2.579787 CGCGGACCAAGCTCTACG 60.580 66.667 0.00 0.00 0.00 3.51
1929 1966 3.188786 GTGCCGCGCTACTTCCTG 61.189 66.667 5.56 0.00 0.00 3.86
2148 2185 4.093952 CCGTACGTCGTGGTCGCT 62.094 66.667 15.21 0.00 37.94 4.93
2292 2329 1.616374 GAGAGGATCCGGGATGTTCTC 59.384 57.143 21.97 21.97 33.66 2.87
2331 2368 1.982938 GAGCCGTACCCAGTGAGGT 60.983 63.158 8.18 8.18 44.37 3.85
2353 2399 2.033801 AGTGAGTGAGCAATTTGTGTGC 59.966 45.455 0.00 0.00 42.55 4.57
2397 2443 6.641314 GTGTACATATTAGTCTGAATCCACCG 59.359 42.308 0.00 0.00 0.00 4.94
2400 2446 0.174845 TTAGTCTGAATCCACCGGCG 59.825 55.000 0.00 0.00 0.00 6.46
2428 2474 3.709653 TGGATTGTCCCCTGTATGAGTAC 59.290 47.826 0.00 0.00 35.03 2.73
2460 2506 1.392710 GCTTCTACCGGAGCTGCCTA 61.393 60.000 9.46 0.00 0.00 3.93
2487 2538 5.822278 TCTAATGCTGTACTCTTGTCGATC 58.178 41.667 0.00 0.00 0.00 3.69
2539 2590 3.648339 ATTGTCATGTCTGGTGTTTGC 57.352 42.857 0.00 0.00 0.00 3.68
2576 2632 9.088512 AGTCATATGTCTCTCGTTTGTTATTTC 57.911 33.333 1.90 0.00 0.00 2.17
2624 2681 2.083774 TGCCATTCAGTTTAAGCTCCG 58.916 47.619 0.00 0.00 0.00 4.63
2638 2695 2.709170 CTCCGTCGGAGCATCTACT 58.291 57.895 27.52 0.00 43.29 2.57
2717 2775 2.576832 CCCTGCAAAGCCAACCCAG 61.577 63.158 0.00 0.00 0.00 4.45
2720 2778 0.032540 CTGCAAAGCCAACCCAGAAC 59.967 55.000 0.00 0.00 0.00 3.01
2721 2779 1.007387 GCAAAGCCAACCCAGAACG 60.007 57.895 0.00 0.00 0.00 3.95
2722 2780 1.734388 GCAAAGCCAACCCAGAACGT 61.734 55.000 0.00 0.00 0.00 3.99
2724 2782 1.029681 AAAGCCAACCCAGAACGTTC 58.970 50.000 20.71 20.71 0.00 3.95
2726 2784 0.110486 AGCCAACCCAGAACGTTCAT 59.890 50.000 28.78 12.15 0.00 2.57
2747 2805 2.075355 TTGTCCGGCACCCCTCAAAT 62.075 55.000 0.00 0.00 0.00 2.32
2751 2809 1.595093 CCGGCACCCCTCAAATCAAC 61.595 60.000 0.00 0.00 0.00 3.18
2752 2810 1.595093 CGGCACCCCTCAAATCAACC 61.595 60.000 0.00 0.00 0.00 3.77
2753 2811 1.257750 GGCACCCCTCAAATCAACCC 61.258 60.000 0.00 0.00 0.00 4.11
2754 2812 0.541764 GCACCCCTCAAATCAACCCA 60.542 55.000 0.00 0.00 0.00 4.51
2755 2813 1.896755 GCACCCCTCAAATCAACCCAT 60.897 52.381 0.00 0.00 0.00 4.00
2756 2814 2.622977 GCACCCCTCAAATCAACCCATA 60.623 50.000 0.00 0.00 0.00 2.74
2757 2815 3.023832 CACCCCTCAAATCAACCCATAC 58.976 50.000 0.00 0.00 0.00 2.39
2758 2816 2.297701 CCCCTCAAATCAACCCATACG 58.702 52.381 0.00 0.00 0.00 3.06
2759 2817 2.356741 CCCCTCAAATCAACCCATACGT 60.357 50.000 0.00 0.00 0.00 3.57
2760 2818 2.682856 CCCTCAAATCAACCCATACGTG 59.317 50.000 0.00 0.00 0.00 4.49
2761 2819 3.605634 CCTCAAATCAACCCATACGTGA 58.394 45.455 0.00 0.00 0.00 4.35
2762 2820 3.623060 CCTCAAATCAACCCATACGTGAG 59.377 47.826 0.00 0.00 0.00 3.51
2763 2821 3.605634 TCAAATCAACCCATACGTGAGG 58.394 45.455 0.00 0.00 0.00 3.86
2764 2822 3.008594 TCAAATCAACCCATACGTGAGGT 59.991 43.478 0.00 0.00 32.42 3.85
2765 2823 4.223255 TCAAATCAACCCATACGTGAGGTA 59.777 41.667 0.00 0.00 35.11 3.08
2766 2824 4.402056 AATCAACCCATACGTGAGGTAG 57.598 45.455 0.00 0.00 33.84 3.18
2767 2825 3.090210 TCAACCCATACGTGAGGTAGA 57.910 47.619 0.00 0.00 33.84 2.59
2768 2826 3.638860 TCAACCCATACGTGAGGTAGAT 58.361 45.455 0.00 0.00 33.84 1.98
2769 2827 3.635373 TCAACCCATACGTGAGGTAGATC 59.365 47.826 0.00 0.00 33.84 2.75
2770 2828 3.596940 ACCCATACGTGAGGTAGATCT 57.403 47.619 0.00 0.00 33.84 2.75
2771 2829 3.488363 ACCCATACGTGAGGTAGATCTC 58.512 50.000 0.00 0.00 33.84 2.75
2772 2830 2.484651 CCCATACGTGAGGTAGATCTCG 59.515 54.545 0.00 0.00 40.87 4.04
2773 2831 2.484651 CCATACGTGAGGTAGATCTCGG 59.515 54.545 0.00 0.00 39.74 4.63
2774 2832 3.400255 CATACGTGAGGTAGATCTCGGA 58.600 50.000 0.00 0.00 39.74 4.55
2775 2833 2.414994 ACGTGAGGTAGATCTCGGAA 57.585 50.000 0.00 0.00 39.74 4.30
2776 2834 2.015587 ACGTGAGGTAGATCTCGGAAC 58.984 52.381 0.00 0.00 39.74 3.62
2777 2835 5.562507 ATACGTGAGGTAGATCTCGGAACG 61.563 50.000 0.00 7.38 44.67 3.95
2794 2852 2.829914 GCCAGGGCGCATCAATCA 60.830 61.111 10.83 0.00 0.00 2.57
2795 2853 3.113745 CCAGGGCGCATCAATCAC 58.886 61.111 10.83 0.00 0.00 3.06
2796 2854 2.711311 CAGGGCGCATCAATCACG 59.289 61.111 10.83 0.00 0.00 4.35
2797 2855 2.108514 CAGGGCGCATCAATCACGT 61.109 57.895 10.83 0.00 0.00 4.49
2798 2856 1.815421 AGGGCGCATCAATCACGTC 60.815 57.895 10.83 0.00 0.00 4.34
2799 2857 2.321060 GGCGCATCAATCACGTCG 59.679 61.111 10.83 0.00 0.00 5.12
2800 2858 2.321060 GCGCATCAATCACGTCGG 59.679 61.111 0.30 0.00 0.00 4.79
2801 2859 3.005898 CGCATCAATCACGTCGGG 58.994 61.111 0.00 0.00 0.00 5.14
2802 2860 1.809619 CGCATCAATCACGTCGGGT 60.810 57.895 0.00 0.00 0.00 5.28
2803 2861 1.752501 CGCATCAATCACGTCGGGTC 61.753 60.000 0.00 0.00 0.00 4.46
2804 2862 1.752501 GCATCAATCACGTCGGGTCG 61.753 60.000 0.00 0.00 0.00 4.79
2805 2863 0.179148 CATCAATCACGTCGGGTCGA 60.179 55.000 0.00 0.00 34.70 4.20
2814 2872 3.080641 TCGGGTCGACCTACTCCA 58.919 61.111 32.52 8.82 36.97 3.86
2815 2873 1.379916 TCGGGTCGACCTACTCCAA 59.620 57.895 32.52 8.93 36.97 3.53
2816 2874 0.251297 TCGGGTCGACCTACTCCAAA 60.251 55.000 32.52 7.92 36.97 3.28
2817 2875 0.822164 CGGGTCGACCTACTCCAAAT 59.178 55.000 32.52 0.00 36.97 2.32
2818 2876 1.202382 CGGGTCGACCTACTCCAAATC 60.202 57.143 32.52 11.90 36.97 2.17
2819 2877 1.138464 GGGTCGACCTACTCCAAATCC 59.862 57.143 32.52 8.86 35.85 3.01
2820 2878 1.202382 GGTCGACCTACTCCAAATCCG 60.202 57.143 27.64 0.00 0.00 4.18
2821 2879 0.458669 TCGACCTACTCCAAATCCGC 59.541 55.000 0.00 0.00 0.00 5.54
2822 2880 0.460311 CGACCTACTCCAAATCCGCT 59.540 55.000 0.00 0.00 0.00 5.52
2823 2881 1.536284 CGACCTACTCCAAATCCGCTC 60.536 57.143 0.00 0.00 0.00 5.03
2824 2882 0.831307 ACCTACTCCAAATCCGCTCC 59.169 55.000 0.00 0.00 0.00 4.70
2825 2883 0.830648 CCTACTCCAAATCCGCTCCA 59.169 55.000 0.00 0.00 0.00 3.86
2826 2884 1.209504 CCTACTCCAAATCCGCTCCAA 59.790 52.381 0.00 0.00 0.00 3.53
2827 2885 2.355716 CCTACTCCAAATCCGCTCCAAA 60.356 50.000 0.00 0.00 0.00 3.28
2828 2886 2.514458 ACTCCAAATCCGCTCCAAAT 57.486 45.000 0.00 0.00 0.00 2.32
2829 2887 2.807676 ACTCCAAATCCGCTCCAAATT 58.192 42.857 0.00 0.00 0.00 1.82
2830 2888 2.493278 ACTCCAAATCCGCTCCAAATTG 59.507 45.455 0.00 0.00 0.00 2.32
2831 2889 2.754552 CTCCAAATCCGCTCCAAATTGA 59.245 45.455 0.00 0.00 0.00 2.57
2832 2890 3.364549 TCCAAATCCGCTCCAAATTGAT 58.635 40.909 0.00 0.00 0.00 2.57
2833 2891 3.381272 TCCAAATCCGCTCCAAATTGATC 59.619 43.478 0.00 0.00 0.00 2.92
2834 2892 3.130869 CCAAATCCGCTCCAAATTGATCA 59.869 43.478 0.00 0.00 0.00 2.92
2835 2893 4.381825 CCAAATCCGCTCCAAATTGATCAA 60.382 41.667 11.26 11.26 0.00 2.57
2836 2894 4.644103 AATCCGCTCCAAATTGATCAAG 57.356 40.909 14.54 0.00 0.00 3.02
2837 2895 3.071874 TCCGCTCCAAATTGATCAAGT 57.928 42.857 14.54 8.63 0.00 3.16
2838 2896 3.420893 TCCGCTCCAAATTGATCAAGTT 58.579 40.909 15.05 15.05 0.00 2.66
2839 2897 3.440173 TCCGCTCCAAATTGATCAAGTTC 59.560 43.478 17.69 6.58 0.00 3.01
2840 2898 3.191162 CCGCTCCAAATTGATCAAGTTCA 59.809 43.478 17.69 7.29 0.00 3.18
2841 2899 4.142315 CCGCTCCAAATTGATCAAGTTCAT 60.142 41.667 17.69 0.00 0.00 2.57
2842 2900 5.032863 CGCTCCAAATTGATCAAGTTCATC 58.967 41.667 17.69 7.24 0.00 2.92
2843 2901 5.032863 GCTCCAAATTGATCAAGTTCATCG 58.967 41.667 17.69 7.34 0.00 3.84
2844 2902 5.163723 GCTCCAAATTGATCAAGTTCATCGA 60.164 40.000 17.69 10.11 0.00 3.59
2845 2903 6.623549 GCTCCAAATTGATCAAGTTCATCGAA 60.624 38.462 17.69 0.79 0.00 3.71
2846 2904 7.395190 TCCAAATTGATCAAGTTCATCGAAT 57.605 32.000 17.69 0.00 0.00 3.34
2847 2905 7.475015 TCCAAATTGATCAAGTTCATCGAATC 58.525 34.615 17.69 0.00 0.00 2.52
2848 2906 7.121020 TCCAAATTGATCAAGTTCATCGAATCA 59.879 33.333 17.69 0.00 0.00 2.57
2849 2907 7.756272 CCAAATTGATCAAGTTCATCGAATCAA 59.244 33.333 17.69 7.20 0.00 2.57
2850 2908 9.131416 CAAATTGATCAAGTTCATCGAATCAAA 57.869 29.630 17.69 0.00 31.74 2.69
2851 2909 9.865321 AAATTGATCAAGTTCATCGAATCAAAT 57.135 25.926 15.05 0.00 31.74 2.32
2867 2925 6.201806 CGAATCAAATATCCTCCTCTTGTGTC 59.798 42.308 0.00 0.00 0.00 3.67
2881 2939 0.841289 TGTGTCCGTCCTCCCTTTTT 59.159 50.000 0.00 0.00 0.00 1.94
2882 2940 1.202722 TGTGTCCGTCCTCCCTTTTTC 60.203 52.381 0.00 0.00 0.00 2.29
2883 2941 0.034337 TGTCCGTCCTCCCTTTTTCG 59.966 55.000 0.00 0.00 0.00 3.46
2884 2942 0.034476 GTCCGTCCTCCCTTTTTCGT 59.966 55.000 0.00 0.00 0.00 3.85
2919 2977 2.612115 CCTCCACCCTTGCTCCCT 60.612 66.667 0.00 0.00 0.00 4.20
2921 2979 3.635268 CTCCACCCTTGCTCCCTGC 62.635 68.421 0.00 0.00 43.25 4.85
2923 2981 3.655211 CACCCTTGCTCCCTGCCT 61.655 66.667 0.00 0.00 42.00 4.75
2948 3006 4.406173 CGTGCTCGTCCGCTGTCT 62.406 66.667 0.00 0.00 0.00 3.41
2949 3007 2.049063 GTGCTCGTCCGCTGTCTT 60.049 61.111 0.00 0.00 0.00 3.01
2950 3008 2.089349 GTGCTCGTCCGCTGTCTTC 61.089 63.158 0.00 0.00 0.00 2.87
2952 3010 2.995872 GCTCGTCCGCTGTCTTCCT 61.996 63.158 0.00 0.00 0.00 3.36
2956 3014 1.079750 GTCCGCTGTCTTCCTCCAC 60.080 63.158 0.00 0.00 0.00 4.02
2957 3015 2.266055 CCGCTGTCTTCCTCCACC 59.734 66.667 0.00 0.00 0.00 4.61
2958 3016 2.266055 CGCTGTCTTCCTCCACCC 59.734 66.667 0.00 0.00 0.00 4.61
2959 3017 2.286523 CGCTGTCTTCCTCCACCCT 61.287 63.158 0.00 0.00 0.00 4.34
2960 3018 1.831652 CGCTGTCTTCCTCCACCCTT 61.832 60.000 0.00 0.00 0.00 3.95
2961 3019 1.276622 GCTGTCTTCCTCCACCCTTA 58.723 55.000 0.00 0.00 0.00 2.69
2962 3020 1.066071 GCTGTCTTCCTCCACCCTTAC 60.066 57.143 0.00 0.00 0.00 2.34
2963 3021 2.541466 CTGTCTTCCTCCACCCTTACT 58.459 52.381 0.00 0.00 0.00 2.24
2964 3022 2.498078 CTGTCTTCCTCCACCCTTACTC 59.502 54.545 0.00 0.00 0.00 2.59
2965 3023 1.832366 GTCTTCCTCCACCCTTACTCC 59.168 57.143 0.00 0.00 0.00 3.85
2966 3024 1.205055 CTTCCTCCACCCTTACTCCC 58.795 60.000 0.00 0.00 0.00 4.30
2967 3025 0.797579 TTCCTCCACCCTTACTCCCT 59.202 55.000 0.00 0.00 0.00 4.20
2968 3026 0.042731 TCCTCCACCCTTACTCCCTG 59.957 60.000 0.00 0.00 0.00 4.45
2969 3027 1.627297 CCTCCACCCTTACTCCCTGC 61.627 65.000 0.00 0.00 0.00 4.85
2970 3028 1.615424 TCCACCCTTACTCCCTGCC 60.615 63.158 0.00 0.00 0.00 4.85
2971 3029 1.616628 CCACCCTTACTCCCTGCCT 60.617 63.158 0.00 0.00 0.00 4.75
2972 3030 1.604378 CACCCTTACTCCCTGCCTG 59.396 63.158 0.00 0.00 0.00 4.85
2973 3031 2.301738 ACCCTTACTCCCTGCCTGC 61.302 63.158 0.00 0.00 0.00 4.85
2974 3032 2.187946 CCTTACTCCCTGCCTGCG 59.812 66.667 0.00 0.00 0.00 5.18
2975 3033 2.512515 CTTACTCCCTGCCTGCGC 60.513 66.667 0.00 0.00 0.00 6.09
2976 3034 4.096003 TTACTCCCTGCCTGCGCC 62.096 66.667 4.18 0.00 0.00 6.53
2997 3055 4.057428 GTGCTCGTCCGCTGTCCT 62.057 66.667 0.00 0.00 0.00 3.85
2998 3056 2.360726 TGCTCGTCCGCTGTCCTA 60.361 61.111 0.00 0.00 0.00 2.94
2999 3057 2.407428 TGCTCGTCCGCTGTCCTAG 61.407 63.158 0.00 0.00 0.00 3.02
3000 3058 2.113433 GCTCGTCCGCTGTCCTAGA 61.113 63.158 0.00 0.00 0.00 2.43
3001 3059 1.448922 GCTCGTCCGCTGTCCTAGAT 61.449 60.000 0.00 0.00 0.00 1.98
3002 3060 0.309302 CTCGTCCGCTGTCCTAGATG 59.691 60.000 0.00 0.00 0.00 2.90
3003 3061 0.393944 TCGTCCGCTGTCCTAGATGT 60.394 55.000 0.00 0.00 0.00 3.06
3004 3062 0.456221 CGTCCGCTGTCCTAGATGTT 59.544 55.000 0.00 0.00 0.00 2.71
3005 3063 1.799181 CGTCCGCTGTCCTAGATGTTG 60.799 57.143 0.00 0.00 0.00 3.33
3006 3064 1.476891 GTCCGCTGTCCTAGATGTTGA 59.523 52.381 0.00 0.00 0.00 3.18
3007 3065 1.476891 TCCGCTGTCCTAGATGTTGAC 59.523 52.381 0.00 0.00 0.00 3.18
3008 3066 1.550065 CGCTGTCCTAGATGTTGACG 58.450 55.000 0.00 0.00 0.00 4.35
3009 3067 1.135373 CGCTGTCCTAGATGTTGACGT 60.135 52.381 0.00 0.00 0.00 4.34
3010 3068 2.671351 CGCTGTCCTAGATGTTGACGTT 60.671 50.000 0.00 0.00 0.00 3.99
3011 3069 2.924290 GCTGTCCTAGATGTTGACGTTC 59.076 50.000 0.00 0.00 0.00 3.95
3012 3070 3.614150 GCTGTCCTAGATGTTGACGTTCA 60.614 47.826 0.00 0.00 0.00 3.18
3013 3071 4.169508 CTGTCCTAGATGTTGACGTTCAG 58.830 47.826 0.00 0.00 0.00 3.02
3014 3072 3.572682 TGTCCTAGATGTTGACGTTCAGT 59.427 43.478 0.00 0.00 0.00 3.41
3015 3073 4.763279 TGTCCTAGATGTTGACGTTCAGTA 59.237 41.667 0.00 0.00 0.00 2.74
3016 3074 5.094134 GTCCTAGATGTTGACGTTCAGTAC 58.906 45.833 0.00 0.00 0.00 2.73
3017 3075 4.157289 TCCTAGATGTTGACGTTCAGTACC 59.843 45.833 0.00 0.00 0.00 3.34
3018 3076 3.314541 AGATGTTGACGTTCAGTACCC 57.685 47.619 0.00 0.00 0.00 3.69
3019 3077 2.897969 AGATGTTGACGTTCAGTACCCT 59.102 45.455 0.00 0.00 0.00 4.34
3030 3088 1.137697 CAGTACCCTATTCCCCACCC 58.862 60.000 0.00 0.00 0.00 4.61
3034 3092 3.886001 CCTATTCCCCACCCCCGC 61.886 72.222 0.00 0.00 0.00 6.13
3068 3126 5.189180 GGCTCTTTTCAACATAGATGGTCT 58.811 41.667 0.00 0.00 0.00 3.85
3085 3316 0.747255 TCTACCATCCAAGAGAGCGC 59.253 55.000 0.00 0.00 0.00 5.92
3170 3460 8.774586 GTCAATAGACATGTAAGTTTGACTTGT 58.225 33.333 23.01 0.00 44.34 3.16
3217 3507 2.462889 AGCTTCGTTTGTTGCATTGTG 58.537 42.857 0.00 0.00 0.00 3.33
3223 3513 2.034675 CGTTTGTTGCATTGTGTTGAGC 60.035 45.455 0.00 0.00 0.00 4.26
3224 3514 2.928757 GTTTGTTGCATTGTGTTGAGCA 59.071 40.909 0.00 0.00 34.79 4.26
3300 3730 2.364970 CAAGCCATTCACTTTGTCCCAA 59.635 45.455 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.806949 AGAAATTGGTGAGGCTAACCA 57.193 42.857 20.41 20.41 46.01 3.67
6 7 4.079253 TGAAGAAATTGGTGAGGCTAACC 58.921 43.478 14.73 14.73 38.26 2.85
7 8 5.241728 AGTTGAAGAAATTGGTGAGGCTAAC 59.758 40.000 0.00 0.00 0.00 2.34
8 9 5.385198 AGTTGAAGAAATTGGTGAGGCTAA 58.615 37.500 0.00 0.00 0.00 3.09
9 10 4.985538 AGTTGAAGAAATTGGTGAGGCTA 58.014 39.130 0.00 0.00 0.00 3.93
10 11 3.823304 GAGTTGAAGAAATTGGTGAGGCT 59.177 43.478 0.00 0.00 0.00 4.58
11 12 3.057245 GGAGTTGAAGAAATTGGTGAGGC 60.057 47.826 0.00 0.00 0.00 4.70
12 13 3.189287 CGGAGTTGAAGAAATTGGTGAGG 59.811 47.826 0.00 0.00 0.00 3.86
13 14 3.815401 ACGGAGTTGAAGAAATTGGTGAG 59.185 43.478 0.00 0.00 37.78 3.51
14 15 3.815809 ACGGAGTTGAAGAAATTGGTGA 58.184 40.909 0.00 0.00 37.78 4.02
30 31 8.621286 AGGCAGTATTGAATATTTTAAACGGAG 58.379 33.333 0.00 0.00 0.00 4.63
31 32 8.514330 AGGCAGTATTGAATATTTTAAACGGA 57.486 30.769 0.00 0.00 0.00 4.69
38 39 9.686683 AGTGACTAAGGCAGTATTGAATATTTT 57.313 29.630 0.00 0.00 37.72 1.82
39 40 9.686683 AAGTGACTAAGGCAGTATTGAATATTT 57.313 29.630 0.00 0.00 37.72 1.40
40 41 9.331282 GAAGTGACTAAGGCAGTATTGAATATT 57.669 33.333 0.00 0.00 37.72 1.28
41 42 8.709308 AGAAGTGACTAAGGCAGTATTGAATAT 58.291 33.333 0.00 0.00 37.72 1.28
42 43 8.079211 AGAAGTGACTAAGGCAGTATTGAATA 57.921 34.615 0.00 0.00 37.72 1.75
43 44 6.951971 AGAAGTGACTAAGGCAGTATTGAAT 58.048 36.000 0.00 0.00 37.72 2.57
44 45 6.360370 AGAAGTGACTAAGGCAGTATTGAA 57.640 37.500 0.00 0.00 37.72 2.69
45 46 6.360370 AAGAAGTGACTAAGGCAGTATTGA 57.640 37.500 0.00 0.00 37.72 2.57
46 47 5.582665 GGAAGAAGTGACTAAGGCAGTATTG 59.417 44.000 0.00 0.00 37.72 1.90
47 48 5.338463 GGGAAGAAGTGACTAAGGCAGTATT 60.338 44.000 0.00 0.00 37.72 1.89
48 49 4.162509 GGGAAGAAGTGACTAAGGCAGTAT 59.837 45.833 0.00 0.00 37.72 2.12
49 50 3.514309 GGGAAGAAGTGACTAAGGCAGTA 59.486 47.826 0.00 0.00 37.72 2.74
50 51 2.303311 GGGAAGAAGTGACTAAGGCAGT 59.697 50.000 0.00 0.00 41.47 4.40
51 52 2.355209 GGGGAAGAAGTGACTAAGGCAG 60.355 54.545 0.00 0.00 0.00 4.85
52 53 1.628846 GGGGAAGAAGTGACTAAGGCA 59.371 52.381 0.00 0.00 0.00 4.75
53 54 1.628846 TGGGGAAGAAGTGACTAAGGC 59.371 52.381 0.00 0.00 0.00 4.35
54 55 2.637872 TGTGGGGAAGAAGTGACTAAGG 59.362 50.000 0.00 0.00 0.00 2.69
55 56 4.559862 ATGTGGGGAAGAAGTGACTAAG 57.440 45.455 0.00 0.00 0.00 2.18
56 57 5.487488 ACATATGTGGGGAAGAAGTGACTAA 59.513 40.000 7.78 0.00 0.00 2.24
57 58 5.030147 ACATATGTGGGGAAGAAGTGACTA 58.970 41.667 7.78 0.00 0.00 2.59
58 59 3.846588 ACATATGTGGGGAAGAAGTGACT 59.153 43.478 7.78 0.00 0.00 3.41
59 60 4.192317 GACATATGTGGGGAAGAAGTGAC 58.808 47.826 14.43 0.00 0.00 3.67
60 61 3.199946 GGACATATGTGGGGAAGAAGTGA 59.800 47.826 14.43 0.00 0.00 3.41
61 62 3.545703 GGACATATGTGGGGAAGAAGTG 58.454 50.000 14.43 0.00 0.00 3.16
62 63 2.509964 GGGACATATGTGGGGAAGAAGT 59.490 50.000 14.43 0.00 0.00 3.01
63 64 2.509548 TGGGACATATGTGGGGAAGAAG 59.490 50.000 14.43 0.00 0.00 2.85
64 65 2.567862 TGGGACATATGTGGGGAAGAA 58.432 47.619 14.43 0.00 0.00 2.52
65 66 2.278657 TGGGACATATGTGGGGAAGA 57.721 50.000 14.43 0.00 0.00 2.87
66 67 3.117550 TCATTGGGACATATGTGGGGAAG 60.118 47.826 14.43 0.00 39.30 3.46
67 68 2.855599 TCATTGGGACATATGTGGGGAA 59.144 45.455 14.43 1.02 39.30 3.97
68 69 2.174639 GTCATTGGGACATATGTGGGGA 59.825 50.000 14.43 0.00 46.19 4.81
69 70 2.586425 GTCATTGGGACATATGTGGGG 58.414 52.381 14.43 0.00 46.19 4.96
104 105 2.032681 ACCTGACGGCTTTCCAGC 59.967 61.111 0.00 0.00 46.52 4.85
105 106 1.376037 GGACCTGACGGCTTTCCAG 60.376 63.158 0.00 0.00 0.00 3.86
106 107 1.841556 AGGACCTGACGGCTTTCCA 60.842 57.895 0.00 0.00 0.00 3.53
107 108 1.376037 CAGGACCTGACGGCTTTCC 60.376 63.158 17.22 0.00 32.44 3.13
108 109 1.376037 CCAGGACCTGACGGCTTTC 60.376 63.158 23.77 0.00 32.44 2.62
109 110 2.750350 CCAGGACCTGACGGCTTT 59.250 61.111 23.77 0.00 32.44 3.51
110 111 4.021925 GCCAGGACCTGACGGCTT 62.022 66.667 23.77 0.00 41.50 4.35
115 116 4.021925 AAGGCGCCAGGACCTGAC 62.022 66.667 31.54 10.83 36.07 3.51
116 117 4.020617 CAAGGCGCCAGGACCTGA 62.021 66.667 31.54 0.00 36.07 3.86
123 124 4.697756 TTCCGACCAAGGCGCCAG 62.698 66.667 31.54 20.72 0.00 4.85
124 125 4.257654 TTTCCGACCAAGGCGCCA 62.258 61.111 31.54 0.76 0.00 5.69
125 126 3.733960 GTTTCCGACCAAGGCGCC 61.734 66.667 21.89 21.89 0.00 6.53
126 127 1.862602 AATGTTTCCGACCAAGGCGC 61.863 55.000 0.00 0.00 0.00 6.53
127 128 0.596082 AAATGTTTCCGACCAAGGCG 59.404 50.000 0.00 0.00 0.00 5.52
128 129 1.336795 CCAAATGTTTCCGACCAAGGC 60.337 52.381 0.00 0.00 0.00 4.35
129 130 2.235016 TCCAAATGTTTCCGACCAAGG 58.765 47.619 0.00 0.00 0.00 3.61
130 131 3.067461 TGTTCCAAATGTTTCCGACCAAG 59.933 43.478 0.00 0.00 0.00 3.61
131 132 3.024547 TGTTCCAAATGTTTCCGACCAA 58.975 40.909 0.00 0.00 0.00 3.67
132 133 2.656002 TGTTCCAAATGTTTCCGACCA 58.344 42.857 0.00 0.00 0.00 4.02
133 134 3.719173 TTGTTCCAAATGTTTCCGACC 57.281 42.857 0.00 0.00 0.00 4.79
134 135 3.428534 GCATTGTTCCAAATGTTTCCGAC 59.571 43.478 0.00 0.00 39.33 4.79
135 136 3.553922 GGCATTGTTCCAAATGTTTCCGA 60.554 43.478 0.00 0.00 39.33 4.55
136 137 2.736192 GGCATTGTTCCAAATGTTTCCG 59.264 45.455 0.00 0.00 39.33 4.30
137 138 3.737850 TGGCATTGTTCCAAATGTTTCC 58.262 40.909 0.00 0.00 39.33 3.13
138 139 4.815846 AGTTGGCATTGTTCCAAATGTTTC 59.184 37.500 0.00 0.00 44.36 2.78
139 140 4.779696 AGTTGGCATTGTTCCAAATGTTT 58.220 34.783 0.00 0.00 44.36 2.83
140 141 4.420522 AGTTGGCATTGTTCCAAATGTT 57.579 36.364 0.00 0.00 44.36 2.71
141 142 4.128643 CAAGTTGGCATTGTTCCAAATGT 58.871 39.130 0.00 0.00 44.36 2.71
142 143 4.211794 GTCAAGTTGGCATTGTTCCAAATG 59.788 41.667 1.68 0.33 44.36 2.32
143 144 4.101430 AGTCAAGTTGGCATTGTTCCAAAT 59.899 37.500 10.65 0.00 44.36 2.32
144 145 3.450457 AGTCAAGTTGGCATTGTTCCAAA 59.550 39.130 10.65 0.00 44.36 3.28
145 146 3.030291 AGTCAAGTTGGCATTGTTCCAA 58.970 40.909 10.65 0.00 40.98 3.53
146 147 2.665165 AGTCAAGTTGGCATTGTTCCA 58.335 42.857 10.65 0.00 0.00 3.53
147 148 3.552890 GGAAGTCAAGTTGGCATTGTTCC 60.553 47.826 10.65 10.06 30.38 3.62
148 149 3.319122 AGGAAGTCAAGTTGGCATTGTTC 59.681 43.478 10.65 4.53 0.00 3.18
149 150 3.299503 AGGAAGTCAAGTTGGCATTGTT 58.700 40.909 10.65 0.00 0.00 2.83
150 151 2.887152 GAGGAAGTCAAGTTGGCATTGT 59.113 45.455 10.65 0.00 0.00 2.71
151 152 2.229784 GGAGGAAGTCAAGTTGGCATTG 59.770 50.000 10.65 0.00 0.00 2.82
152 153 2.519013 GGAGGAAGTCAAGTTGGCATT 58.481 47.619 10.65 1.10 0.00 3.56
153 154 1.611673 CGGAGGAAGTCAAGTTGGCAT 60.612 52.381 10.65 0.00 0.00 4.40
154 155 0.250295 CGGAGGAAGTCAAGTTGGCA 60.250 55.000 10.65 0.00 0.00 4.92
155 156 1.578206 GCGGAGGAAGTCAAGTTGGC 61.578 60.000 0.00 0.00 0.00 4.52
156 157 0.035458 AGCGGAGGAAGTCAAGTTGG 59.965 55.000 2.34 0.00 0.00 3.77
157 158 1.884235 AAGCGGAGGAAGTCAAGTTG 58.116 50.000 0.00 0.00 0.00 3.16
158 159 2.640316 AAAGCGGAGGAAGTCAAGTT 57.360 45.000 0.00 0.00 0.00 2.66
159 160 3.983044 ATAAAGCGGAGGAAGTCAAGT 57.017 42.857 0.00 0.00 0.00 3.16
160 161 3.797256 CGTATAAAGCGGAGGAAGTCAAG 59.203 47.826 0.00 0.00 0.00 3.02
161 162 3.777478 CGTATAAAGCGGAGGAAGTCAA 58.223 45.455 0.00 0.00 0.00 3.18
162 163 3.431922 CGTATAAAGCGGAGGAAGTCA 57.568 47.619 0.00 0.00 0.00 3.41
173 174 3.613737 TCACTAAACGCACCGTATAAAGC 59.386 43.478 0.00 0.00 39.99 3.51
174 175 5.961395 ATCACTAAACGCACCGTATAAAG 57.039 39.130 0.00 0.00 39.99 1.85
175 176 5.978919 CCTATCACTAAACGCACCGTATAAA 59.021 40.000 0.00 0.00 39.99 1.40
176 177 5.067674 ACCTATCACTAAACGCACCGTATAA 59.932 40.000 0.00 0.00 39.99 0.98
177 178 4.580167 ACCTATCACTAAACGCACCGTATA 59.420 41.667 0.00 0.00 39.99 1.47
178 179 3.382546 ACCTATCACTAAACGCACCGTAT 59.617 43.478 0.00 0.00 39.99 3.06
179 180 2.754552 ACCTATCACTAAACGCACCGTA 59.245 45.455 0.00 0.00 39.99 4.02
180 181 1.547372 ACCTATCACTAAACGCACCGT 59.453 47.619 0.00 0.00 43.97 4.83
181 182 2.288961 ACCTATCACTAAACGCACCG 57.711 50.000 0.00 0.00 0.00 4.94
182 183 3.592059 TGAACCTATCACTAAACGCACC 58.408 45.455 0.00 0.00 31.50 5.01
183 184 5.109903 AGATGAACCTATCACTAAACGCAC 58.890 41.667 0.00 0.00 41.93 5.34
184 185 5.127194 AGAGATGAACCTATCACTAAACGCA 59.873 40.000 0.00 0.00 41.93 5.24
185 186 5.460419 CAGAGATGAACCTATCACTAAACGC 59.540 44.000 0.00 0.00 41.93 4.84
186 187 5.980116 CCAGAGATGAACCTATCACTAAACG 59.020 44.000 0.00 0.00 41.93 3.60
187 188 6.758886 CACCAGAGATGAACCTATCACTAAAC 59.241 42.308 0.00 0.00 41.93 2.01
188 189 6.630413 GCACCAGAGATGAACCTATCACTAAA 60.630 42.308 0.00 0.00 41.93 1.85
189 190 5.163405 GCACCAGAGATGAACCTATCACTAA 60.163 44.000 0.00 0.00 41.93 2.24
190 191 4.342378 GCACCAGAGATGAACCTATCACTA 59.658 45.833 0.00 0.00 41.93 2.74
191 192 3.133721 GCACCAGAGATGAACCTATCACT 59.866 47.826 0.00 0.00 41.93 3.41
192 193 3.133721 AGCACCAGAGATGAACCTATCAC 59.866 47.826 0.00 0.00 41.93 3.06
193 194 3.378512 AGCACCAGAGATGAACCTATCA 58.621 45.455 0.00 0.00 43.67 2.15
194 195 3.640967 AGAGCACCAGAGATGAACCTATC 59.359 47.826 0.00 0.00 0.00 2.08
195 196 3.640967 GAGAGCACCAGAGATGAACCTAT 59.359 47.826 0.00 0.00 0.00 2.57
196 197 3.027412 GAGAGCACCAGAGATGAACCTA 58.973 50.000 0.00 0.00 0.00 3.08
197 198 1.830477 GAGAGCACCAGAGATGAACCT 59.170 52.381 0.00 0.00 0.00 3.50
198 199 1.552337 TGAGAGCACCAGAGATGAACC 59.448 52.381 0.00 0.00 0.00 3.62
199 200 3.540314 ATGAGAGCACCAGAGATGAAC 57.460 47.619 0.00 0.00 0.00 3.18
200 201 5.682234 TTTATGAGAGCACCAGAGATGAA 57.318 39.130 0.00 0.00 0.00 2.57
201 202 5.883685 ATTTATGAGAGCACCAGAGATGA 57.116 39.130 0.00 0.00 0.00 2.92
202 203 8.618702 AATTATTTATGAGAGCACCAGAGATG 57.381 34.615 0.00 0.00 0.00 2.90
206 207 9.288576 CCAATAATTATTTATGAGAGCACCAGA 57.711 33.333 8.01 0.00 0.00 3.86
207 208 8.517878 CCCAATAATTATTTATGAGAGCACCAG 58.482 37.037 8.01 0.00 0.00 4.00
208 209 7.451255 CCCCAATAATTATTTATGAGAGCACCA 59.549 37.037 8.01 0.00 0.00 4.17
209 210 7.093771 CCCCCAATAATTATTTATGAGAGCACC 60.094 40.741 8.01 0.00 0.00 5.01
210 211 7.577616 GCCCCCAATAATTATTTATGAGAGCAC 60.578 40.741 8.01 0.00 0.00 4.40
211 212 6.437162 GCCCCCAATAATTATTTATGAGAGCA 59.563 38.462 8.01 0.00 0.00 4.26
212 213 6.437162 TGCCCCCAATAATTATTTATGAGAGC 59.563 38.462 8.01 6.25 0.00 4.09
213 214 7.363268 GCTGCCCCCAATAATTATTTATGAGAG 60.363 40.741 8.01 3.12 0.00 3.20
214 215 6.437162 GCTGCCCCCAATAATTATTTATGAGA 59.563 38.462 8.01 0.00 0.00 3.27
215 216 6.211184 TGCTGCCCCCAATAATTATTTATGAG 59.789 38.462 8.01 2.21 0.00 2.90
216 217 6.014669 GTGCTGCCCCCAATAATTATTTATGA 60.015 38.462 8.01 0.00 0.00 2.15
217 218 6.165577 GTGCTGCCCCCAATAATTATTTATG 58.834 40.000 8.01 0.00 0.00 1.90
218 219 5.843421 TGTGCTGCCCCCAATAATTATTTAT 59.157 36.000 8.01 0.00 0.00 1.40
219 220 5.211973 TGTGCTGCCCCCAATAATTATTTA 58.788 37.500 8.01 0.00 0.00 1.40
220 221 4.036518 TGTGCTGCCCCCAATAATTATTT 58.963 39.130 8.01 0.00 0.00 1.40
221 222 3.642848 CTGTGCTGCCCCCAATAATTATT 59.357 43.478 4.81 4.81 0.00 1.40
222 223 3.233507 CTGTGCTGCCCCCAATAATTAT 58.766 45.455 0.00 0.00 0.00 1.28
223 224 2.665165 CTGTGCTGCCCCCAATAATTA 58.335 47.619 0.00 0.00 0.00 1.40
224 225 1.488390 CTGTGCTGCCCCCAATAATT 58.512 50.000 0.00 0.00 0.00 1.40
225 226 0.397535 CCTGTGCTGCCCCCAATAAT 60.398 55.000 0.00 0.00 0.00 1.28
226 227 1.000233 CCTGTGCTGCCCCCAATAA 60.000 57.895 0.00 0.00 0.00 1.40
227 228 1.799157 AACCTGTGCTGCCCCCAATA 61.799 55.000 0.00 0.00 0.00 1.90
228 229 3.164610 AACCTGTGCTGCCCCCAAT 62.165 57.895 0.00 0.00 0.00 3.16
229 230 3.808218 GAACCTGTGCTGCCCCCAA 62.808 63.158 0.00 0.00 0.00 4.12
230 231 4.284550 GAACCTGTGCTGCCCCCA 62.285 66.667 0.00 0.00 0.00 4.96
239 240 4.263572 TGTGGGCCCGAACCTGTG 62.264 66.667 19.37 0.00 0.00 3.66
240 241 3.953775 CTGTGGGCCCGAACCTGT 61.954 66.667 19.37 0.00 0.00 4.00
282 283 2.674380 GTCAGCCTGCCCTGTTGG 60.674 66.667 0.00 0.00 34.47 3.77
288 289 2.677875 CTTTGGGTCAGCCTGCCC 60.678 66.667 14.97 14.97 45.04 5.36
292 293 1.073897 GTCAGCTTTGGGTCAGCCT 59.926 57.895 0.00 0.00 38.09 4.58
341 342 0.387239 TGACTCTCGTCGTCGTCGTA 60.387 55.000 11.41 1.49 43.21 3.43
406 407 1.686428 CCTCCTCTTCATCGGGAGACA 60.686 57.143 9.49 0.00 46.82 3.41
428 429 1.762063 GGATGGTGGGGGCATTTCC 60.762 63.158 0.00 0.00 0.00 3.13
429 430 2.127232 CGGATGGTGGGGGCATTTC 61.127 63.158 0.00 0.00 0.00 2.17
430 431 2.043046 CGGATGGTGGGGGCATTT 60.043 61.111 0.00 0.00 0.00 2.32
517 521 2.990479 GACGACATGGGCCTCCTT 59.010 61.111 4.53 0.00 0.00 3.36
618 633 3.775654 GAGAGAGCGGGGTGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
623 638 1.379309 GAGAGTGAGAGAGCGGGGT 60.379 63.158 0.00 0.00 0.00 4.95
637 652 1.674057 GGTGTGGGTCACTGGAGAG 59.326 63.158 0.00 0.00 45.50 3.20
660 688 4.869440 CGAGCTGAGCTGAGCCCG 62.869 72.222 22.26 18.80 39.88 6.13
662 690 4.146075 AGCGAGCTGAGCTGAGCC 62.146 66.667 22.26 12.16 44.22 4.70
668 696 3.177920 CGTGTGAGCGAGCTGAGC 61.178 66.667 0.84 0.00 0.00 4.26
669 697 1.799519 GACGTGTGAGCGAGCTGAG 60.800 63.158 0.84 0.00 35.59 3.35
670 698 2.255554 GACGTGTGAGCGAGCTGA 59.744 61.111 0.84 0.00 35.59 4.26
671 699 3.168604 CGACGTGTGAGCGAGCTG 61.169 66.667 0.84 0.00 35.59 4.24
674 702 3.971453 ATGGCGACGTGTGAGCGAG 62.971 63.158 0.00 0.00 35.59 5.03
675 703 3.964221 GATGGCGACGTGTGAGCGA 62.964 63.158 0.00 0.00 35.59 4.93
676 704 3.545481 GATGGCGACGTGTGAGCG 61.545 66.667 0.00 0.00 37.94 5.03
987 1015 4.789075 ACCATCGTTCGTCGGCGG 62.789 66.667 10.62 0.00 40.32 6.13
2292 2329 0.731514 CCAAGCTCAAATGCACAGCG 60.732 55.000 0.00 0.00 38.26 5.18
2331 2368 3.250762 GCACACAAATTGCTCACTCACTA 59.749 43.478 0.00 0.00 37.00 2.74
2353 2399 1.338200 ACTAGGGAAAACTGCAGAGCG 60.338 52.381 23.35 0.00 0.00 5.03
2397 2443 3.849953 GACAATCCACGCGACGCC 61.850 66.667 15.93 0.00 0.00 5.68
2400 2446 2.818274 GGGGACAATCCACGCGAC 60.818 66.667 15.93 0.00 38.64 5.19
2413 2459 2.240414 TCACTCGTACTCATACAGGGGA 59.760 50.000 0.00 0.00 0.00 4.81
2428 2474 2.458951 GTAGAAGCTCAGCATCACTCG 58.541 52.381 4.40 0.00 0.00 4.18
2460 2506 5.807520 CGACAAGAGTACAGCATTAGAACAT 59.192 40.000 0.00 0.00 0.00 2.71
2487 2538 3.428870 CACGCTACACTAAACTCAACTGG 59.571 47.826 0.00 0.00 0.00 4.00
2523 2574 2.158769 AGACTGCAAACACCAGACATGA 60.159 45.455 0.00 0.00 34.47 3.07
2539 2590 7.509141 AGAGACATATGACTATGTGAGACTG 57.491 40.000 10.38 0.00 46.28 3.51
2563 2614 5.278266 CCCTTTGCTCTGAAATAACAAACGA 60.278 40.000 0.00 0.00 0.00 3.85
2638 2695 1.844544 GAGGGTTTAAGGGTCCGGCA 61.845 60.000 0.00 0.00 0.00 5.69
2717 2775 0.110373 GCCGGACAACATGAACGTTC 60.110 55.000 21.42 21.42 0.00 3.95
2720 2778 1.206578 GTGCCGGACAACATGAACG 59.793 57.895 5.05 0.00 0.00 3.95
2721 2779 1.579429 GGTGCCGGACAACATGAAC 59.421 57.895 5.05 0.00 35.37 3.18
2722 2780 1.602323 GGGTGCCGGACAACATGAA 60.602 57.895 5.05 0.00 37.92 2.57
2724 2782 3.061848 GGGGTGCCGGACAACATG 61.062 66.667 5.05 0.00 37.92 3.21
2726 2784 3.948719 GAGGGGTGCCGGACAACA 61.949 66.667 5.05 0.00 37.92 3.33
2747 2805 3.090210 TCTACCTCACGTATGGGTTGA 57.910 47.619 10.70 11.13 32.63 3.18
2751 2809 2.484651 CGAGATCTACCTCACGTATGGG 59.515 54.545 0.00 5.25 32.86 4.00
2752 2810 2.484651 CCGAGATCTACCTCACGTATGG 59.515 54.545 0.00 4.67 32.86 2.74
2753 2811 3.400255 TCCGAGATCTACCTCACGTATG 58.600 50.000 0.00 0.00 32.86 2.39
2754 2812 3.766068 TCCGAGATCTACCTCACGTAT 57.234 47.619 0.00 0.00 32.86 3.06
2755 2813 3.201290 GTTCCGAGATCTACCTCACGTA 58.799 50.000 0.00 0.00 32.86 3.57
2756 2814 2.015587 GTTCCGAGATCTACCTCACGT 58.984 52.381 0.00 0.00 32.86 4.49
2757 2815 1.003759 CGTTCCGAGATCTACCTCACG 60.004 57.143 0.00 0.00 32.86 4.35
2758 2816 1.268640 GCGTTCCGAGATCTACCTCAC 60.269 57.143 0.00 0.00 32.86 3.51
2759 2817 1.022735 GCGTTCCGAGATCTACCTCA 58.977 55.000 0.00 0.00 32.86 3.86
2760 2818 0.311477 GGCGTTCCGAGATCTACCTC 59.689 60.000 0.00 0.00 0.00 3.85
2761 2819 0.395311 TGGCGTTCCGAGATCTACCT 60.395 55.000 0.00 0.00 34.14 3.08
2762 2820 0.030908 CTGGCGTTCCGAGATCTACC 59.969 60.000 0.00 0.00 34.14 3.18
2763 2821 0.030908 CCTGGCGTTCCGAGATCTAC 59.969 60.000 0.00 0.00 34.14 2.59
2764 2822 1.107538 CCCTGGCGTTCCGAGATCTA 61.108 60.000 0.00 0.00 34.14 1.98
2765 2823 2.427245 CCCTGGCGTTCCGAGATCT 61.427 63.158 0.00 0.00 34.14 2.75
2766 2824 2.107141 CCCTGGCGTTCCGAGATC 59.893 66.667 0.00 0.00 34.14 2.75
2767 2825 4.162690 GCCCTGGCGTTCCGAGAT 62.163 66.667 0.00 0.00 34.14 2.75
2777 2835 2.829914 TGATTGATGCGCCCTGGC 60.830 61.111 4.18 0.00 37.85 4.85
2778 2836 2.827051 CGTGATTGATGCGCCCTGG 61.827 63.158 4.18 0.00 0.00 4.45
2779 2837 2.040213 GACGTGATTGATGCGCCCTG 62.040 60.000 4.18 0.00 0.00 4.45
2780 2838 1.815421 GACGTGATTGATGCGCCCT 60.815 57.895 4.18 0.00 0.00 5.19
2781 2839 2.709475 GACGTGATTGATGCGCCC 59.291 61.111 4.18 0.00 0.00 6.13
2782 2840 2.321060 CGACGTGATTGATGCGCC 59.679 61.111 4.18 0.00 0.00 6.53
2783 2841 2.321060 CCGACGTGATTGATGCGC 59.679 61.111 0.00 0.00 0.00 6.09
2784 2842 1.752501 GACCCGACGTGATTGATGCG 61.753 60.000 0.00 0.00 0.00 4.73
2785 2843 1.752501 CGACCCGACGTGATTGATGC 61.753 60.000 0.00 0.00 0.00 3.91
2786 2844 0.179148 TCGACCCGACGTGATTGATG 60.179 55.000 0.00 0.00 34.70 3.07
2787 2845 0.179145 GTCGACCCGACGTGATTGAT 60.179 55.000 3.51 0.00 46.56 2.57
2788 2846 1.210931 GTCGACCCGACGTGATTGA 59.789 57.895 3.51 0.00 46.56 2.57
2789 2847 3.763319 GTCGACCCGACGTGATTG 58.237 61.111 3.51 0.00 46.56 2.67
2797 2855 0.251297 TTTGGAGTAGGTCGACCCGA 60.251 55.000 30.82 16.85 38.74 5.14
2798 2856 0.822164 ATTTGGAGTAGGTCGACCCG 59.178 55.000 30.82 0.00 38.74 5.28
2799 2857 1.138464 GGATTTGGAGTAGGTCGACCC 59.862 57.143 30.82 16.68 36.42 4.46
2800 2858 1.202382 CGGATTTGGAGTAGGTCGACC 60.202 57.143 27.67 27.67 0.00 4.79
2801 2859 1.801765 GCGGATTTGGAGTAGGTCGAC 60.802 57.143 7.13 7.13 0.00 4.20
2802 2860 0.458669 GCGGATTTGGAGTAGGTCGA 59.541 55.000 0.00 0.00 0.00 4.20
2803 2861 0.460311 AGCGGATTTGGAGTAGGTCG 59.540 55.000 0.00 0.00 0.00 4.79
2804 2862 1.202545 GGAGCGGATTTGGAGTAGGTC 60.203 57.143 0.00 0.00 0.00 3.85
2805 2863 0.831307 GGAGCGGATTTGGAGTAGGT 59.169 55.000 0.00 0.00 0.00 3.08
2806 2864 0.830648 TGGAGCGGATTTGGAGTAGG 59.169 55.000 0.00 0.00 0.00 3.18
2807 2865 2.691409 TTGGAGCGGATTTGGAGTAG 57.309 50.000 0.00 0.00 0.00 2.57
2808 2866 3.644966 ATTTGGAGCGGATTTGGAGTA 57.355 42.857 0.00 0.00 0.00 2.59
2809 2867 2.493278 CAATTTGGAGCGGATTTGGAGT 59.507 45.455 0.00 0.00 0.00 3.85
2810 2868 2.754552 TCAATTTGGAGCGGATTTGGAG 59.245 45.455 0.00 0.00 0.00 3.86
2811 2869 2.801483 TCAATTTGGAGCGGATTTGGA 58.199 42.857 0.00 0.00 0.00 3.53
2812 2870 3.130869 TGATCAATTTGGAGCGGATTTGG 59.869 43.478 0.00 0.00 0.00 3.28
2813 2871 4.374843 TGATCAATTTGGAGCGGATTTG 57.625 40.909 0.00 0.00 0.00 2.32
2814 2872 4.463891 ACTTGATCAATTTGGAGCGGATTT 59.536 37.500 8.96 0.00 0.00 2.17
2815 2873 4.019174 ACTTGATCAATTTGGAGCGGATT 58.981 39.130 8.96 0.00 0.00 3.01
2816 2874 3.624777 ACTTGATCAATTTGGAGCGGAT 58.375 40.909 8.96 0.00 0.00 4.18
2817 2875 3.071874 ACTTGATCAATTTGGAGCGGA 57.928 42.857 8.96 0.00 0.00 5.54
2818 2876 3.191162 TGAACTTGATCAATTTGGAGCGG 59.809 43.478 15.03 0.34 0.00 5.52
2819 2877 4.424061 TGAACTTGATCAATTTGGAGCG 57.576 40.909 15.03 1.03 0.00 5.03
2820 2878 5.032863 CGATGAACTTGATCAATTTGGAGC 58.967 41.667 15.03 4.54 32.06 4.70
2821 2879 6.426980 TCGATGAACTTGATCAATTTGGAG 57.573 37.500 15.03 2.16 32.06 3.86
2822 2880 6.816134 TTCGATGAACTTGATCAATTTGGA 57.184 33.333 15.03 3.13 32.06 3.53
2823 2881 7.252708 TGATTCGATGAACTTGATCAATTTGG 58.747 34.615 15.03 3.51 32.06 3.28
2824 2882 8.677871 TTGATTCGATGAACTTGATCAATTTG 57.322 30.769 15.03 3.86 32.06 2.32
2825 2883 9.865321 ATTTGATTCGATGAACTTGATCAATTT 57.135 25.926 8.96 9.83 32.06 1.82
2829 2887 8.777413 GGATATTTGATTCGATGAACTTGATCA 58.223 33.333 0.00 0.00 0.00 2.92
2830 2888 8.997323 AGGATATTTGATTCGATGAACTTGATC 58.003 33.333 0.00 0.00 0.00 2.92
2831 2889 8.915057 AGGATATTTGATTCGATGAACTTGAT 57.085 30.769 0.00 0.00 0.00 2.57
2832 2890 7.442364 GGAGGATATTTGATTCGATGAACTTGA 59.558 37.037 0.00 0.00 0.00 3.02
2833 2891 7.443575 AGGAGGATATTTGATTCGATGAACTTG 59.556 37.037 0.00 0.00 0.00 3.16
2834 2892 7.512992 AGGAGGATATTTGATTCGATGAACTT 58.487 34.615 0.00 0.00 0.00 2.66
2835 2893 7.016072 AGAGGAGGATATTTGATTCGATGAACT 59.984 37.037 0.00 0.00 0.00 3.01
2836 2894 7.158021 AGAGGAGGATATTTGATTCGATGAAC 58.842 38.462 0.00 0.00 0.00 3.18
2837 2895 7.308450 AGAGGAGGATATTTGATTCGATGAA 57.692 36.000 0.00 0.00 0.00 2.57
2838 2896 6.924913 AGAGGAGGATATTTGATTCGATGA 57.075 37.500 0.00 0.00 0.00 2.92
2839 2897 6.933521 ACAAGAGGAGGATATTTGATTCGATG 59.066 38.462 0.00 0.00 0.00 3.84
2840 2898 6.933521 CACAAGAGGAGGATATTTGATTCGAT 59.066 38.462 0.00 0.00 0.00 3.59
2841 2899 6.127054 ACACAAGAGGAGGATATTTGATTCGA 60.127 38.462 0.00 0.00 0.00 3.71
2842 2900 6.051717 ACACAAGAGGAGGATATTTGATTCG 58.948 40.000 0.00 0.00 0.00 3.34
2843 2901 6.484977 GGACACAAGAGGAGGATATTTGATTC 59.515 42.308 0.00 0.00 0.00 2.52
2844 2902 6.360618 GGACACAAGAGGAGGATATTTGATT 58.639 40.000 0.00 0.00 0.00 2.57
2845 2903 5.453903 CGGACACAAGAGGAGGATATTTGAT 60.454 44.000 0.00 0.00 0.00 2.57
2846 2904 4.141937 CGGACACAAGAGGAGGATATTTGA 60.142 45.833 0.00 0.00 0.00 2.69
2847 2905 4.122776 CGGACACAAGAGGAGGATATTTG 58.877 47.826 0.00 0.00 0.00 2.32
2848 2906 3.775316 ACGGACACAAGAGGAGGATATTT 59.225 43.478 0.00 0.00 0.00 1.40
2849 2907 3.375699 ACGGACACAAGAGGAGGATATT 58.624 45.455 0.00 0.00 0.00 1.28
2850 2908 2.959707 GACGGACACAAGAGGAGGATAT 59.040 50.000 0.00 0.00 0.00 1.63
2851 2909 2.376109 GACGGACACAAGAGGAGGATA 58.624 52.381 0.00 0.00 0.00 2.59
2852 2910 1.187087 GACGGACACAAGAGGAGGAT 58.813 55.000 0.00 0.00 0.00 3.24
2867 2925 0.250166 ACACGAAAAAGGGAGGACGG 60.250 55.000 0.00 0.00 0.00 4.79
2883 2941 3.264866 AAGACGACGGCTCGGACAC 62.265 63.158 2.24 1.33 44.80 3.67
2884 2942 2.974489 GAAGACGACGGCTCGGACA 61.974 63.158 2.24 0.00 44.80 4.02
2943 3001 2.498078 GAGTAAGGGTGGAGGAAGACAG 59.502 54.545 0.00 0.00 0.00 3.51
2944 3002 2.537143 GAGTAAGGGTGGAGGAAGACA 58.463 52.381 0.00 0.00 0.00 3.41
2948 3006 0.797579 AGGGAGTAAGGGTGGAGGAA 59.202 55.000 0.00 0.00 0.00 3.36
2949 3007 0.042731 CAGGGAGTAAGGGTGGAGGA 59.957 60.000 0.00 0.00 0.00 3.71
2950 3008 1.627297 GCAGGGAGTAAGGGTGGAGG 61.627 65.000 0.00 0.00 0.00 4.30
2952 3010 1.615424 GGCAGGGAGTAAGGGTGGA 60.615 63.158 0.00 0.00 0.00 4.02
2956 3014 2.592308 GCAGGCAGGGAGTAAGGG 59.408 66.667 0.00 0.00 0.00 3.95
2957 3015 2.187946 CGCAGGCAGGGAGTAAGG 59.812 66.667 0.00 0.00 0.00 2.69
2958 3016 2.512515 GCGCAGGCAGGGAGTAAG 60.513 66.667 0.30 0.00 39.62 2.34
2980 3038 2.600122 CTAGGACAGCGGACGAGCAC 62.600 65.000 0.00 0.00 40.15 4.40
2981 3039 2.360726 TAGGACAGCGGACGAGCA 60.361 61.111 0.00 0.00 40.15 4.26
2982 3040 1.448922 ATCTAGGACAGCGGACGAGC 61.449 60.000 0.00 0.00 37.41 5.03
2983 3041 0.309302 CATCTAGGACAGCGGACGAG 59.691 60.000 0.00 0.00 0.00 4.18
2984 3042 0.393944 ACATCTAGGACAGCGGACGA 60.394 55.000 0.00 0.00 0.00 4.20
2985 3043 0.456221 AACATCTAGGACAGCGGACG 59.544 55.000 0.00 0.00 0.00 4.79
2986 3044 1.476891 TCAACATCTAGGACAGCGGAC 59.523 52.381 0.00 0.00 0.00 4.79
2987 3045 1.476891 GTCAACATCTAGGACAGCGGA 59.523 52.381 0.00 0.00 0.00 5.54
2988 3046 1.799181 CGTCAACATCTAGGACAGCGG 60.799 57.143 0.00 0.00 0.00 5.52
2989 3047 1.135373 ACGTCAACATCTAGGACAGCG 60.135 52.381 0.00 0.00 0.00 5.18
2990 3048 2.656560 ACGTCAACATCTAGGACAGC 57.343 50.000 0.00 0.00 0.00 4.40
2991 3049 4.169508 CTGAACGTCAACATCTAGGACAG 58.830 47.826 0.00 0.00 0.00 3.51
2992 3050 3.572682 ACTGAACGTCAACATCTAGGACA 59.427 43.478 0.00 0.00 0.00 4.02
2993 3051 4.175787 ACTGAACGTCAACATCTAGGAC 57.824 45.455 0.00 0.00 0.00 3.85
2994 3052 4.157289 GGTACTGAACGTCAACATCTAGGA 59.843 45.833 0.00 0.00 0.00 2.94
2995 3053 4.421948 GGTACTGAACGTCAACATCTAGG 58.578 47.826 0.00 0.00 0.00 3.02
2996 3054 4.158025 AGGGTACTGAACGTCAACATCTAG 59.842 45.833 0.00 0.00 0.00 2.43
2997 3055 4.084287 AGGGTACTGAACGTCAACATCTA 58.916 43.478 0.00 0.00 0.00 1.98
2998 3056 2.897969 AGGGTACTGAACGTCAACATCT 59.102 45.455 0.00 0.00 0.00 2.90
2999 3057 3.314541 AGGGTACTGAACGTCAACATC 57.685 47.619 0.00 0.00 0.00 3.06
3000 3058 5.416271 AATAGGGTACTGAACGTCAACAT 57.584 39.130 0.00 0.00 0.00 2.71
3001 3059 4.322198 GGAATAGGGTACTGAACGTCAACA 60.322 45.833 0.00 0.00 0.00 3.33
3002 3060 4.179298 GGAATAGGGTACTGAACGTCAAC 58.821 47.826 0.00 0.00 0.00 3.18
3003 3061 3.196254 GGGAATAGGGTACTGAACGTCAA 59.804 47.826 0.00 0.00 0.00 3.18
3004 3062 2.762327 GGGAATAGGGTACTGAACGTCA 59.238 50.000 0.00 0.00 0.00 4.35
3005 3063 2.102084 GGGGAATAGGGTACTGAACGTC 59.898 54.545 0.00 0.00 0.00 4.34
3006 3064 2.113807 GGGGAATAGGGTACTGAACGT 58.886 52.381 0.00 0.00 0.00 3.99
3007 3065 2.112998 TGGGGAATAGGGTACTGAACG 58.887 52.381 0.00 0.00 0.00 3.95
3008 3066 2.172082 GGTGGGGAATAGGGTACTGAAC 59.828 54.545 0.00 0.00 0.00 3.18
3009 3067 2.484602 GGTGGGGAATAGGGTACTGAA 58.515 52.381 0.00 0.00 0.00 3.02
3010 3068 1.344701 GGGTGGGGAATAGGGTACTGA 60.345 57.143 0.00 0.00 0.00 3.41
3011 3069 1.137697 GGGTGGGGAATAGGGTACTG 58.862 60.000 0.00 0.00 0.00 2.74
3012 3070 0.029371 GGGGTGGGGAATAGGGTACT 60.029 60.000 0.00 0.00 0.00 2.73
3013 3071 1.064239 GGGGGTGGGGAATAGGGTAC 61.064 65.000 0.00 0.00 0.00 3.34
3014 3072 1.322661 GGGGGTGGGGAATAGGGTA 59.677 63.158 0.00 0.00 0.00 3.69
3015 3073 2.045646 GGGGGTGGGGAATAGGGT 59.954 66.667 0.00 0.00 0.00 4.34
3016 3074 3.175710 CGGGGGTGGGGAATAGGG 61.176 72.222 0.00 0.00 0.00 3.53
3017 3075 3.886001 GCGGGGGTGGGGAATAGG 61.886 72.222 0.00 0.00 0.00 2.57
3018 3076 3.886001 GGCGGGGGTGGGGAATAG 61.886 72.222 0.00 0.00 0.00 1.73
3068 3126 0.975556 TGGCGCTCTCTTGGATGGTA 60.976 55.000 7.64 0.00 0.00 3.25
3085 3316 6.201806 TGAATAGAAACCGCAAAATTTGTTGG 59.798 34.615 14.54 14.54 35.37 3.77
3133 3423 4.508551 TGTCTATTGACTCCAATGCCAT 57.491 40.909 8.74 0.00 42.55 4.40
3223 3513 7.404671 ACCCCAACTAGCAAAATAAGTATTG 57.595 36.000 0.00 0.00 0.00 1.90
3224 3514 7.093509 CCAACCCCAACTAGCAAAATAAGTATT 60.094 37.037 0.00 0.00 0.00 1.89
3227 3657 4.526650 CCAACCCCAACTAGCAAAATAAGT 59.473 41.667 0.00 0.00 0.00 2.24
3300 3730 7.442062 GGTTTCTCATTCAATTTCAACCAACAT 59.558 33.333 0.00 0.00 33.89 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.