Multiple sequence alignment - TraesCS2A01G518400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G518400 chr2A 100.000 7880 0 0 1 7880 742139156 742131277 0.000000e+00 14552.0
1 TraesCS2A01G518400 chr2A 90.588 850 67 11 85 928 20374969 20374127 0.000000e+00 1114.0
2 TraesCS2A01G518400 chr2A 90.868 657 55 5 1 654 20382806 20382152 0.000000e+00 876.0
3 TraesCS2A01G518400 chr2A 92.735 234 15 2 692 924 20619132 20619364 3.520000e-88 337.0
4 TraesCS2A01G518400 chr2A 94.118 170 10 0 6932 7101 741416255 741416086 7.840000e-65 259.0
5 TraesCS2A01G518400 chr2A 93.056 144 10 0 6667 6810 741417871 741417728 2.230000e-50 211.0
6 TraesCS2A01G518400 chr2A 93.662 142 5 1 7743 7880 741379824 741379683 8.010000e-50 209.0
7 TraesCS2A01G518400 chr2A 91.209 91 1 6 5892 5977 726911052 726910964 5.000000e-22 117.0
8 TraesCS2A01G518400 chr2D 96.287 5844 149 29 1534 7328 609438990 609433166 0.000000e+00 9527.0
9 TraesCS2A01G518400 chr2D 95.094 530 11 5 938 1465 609439865 609439349 0.000000e+00 821.0
10 TraesCS2A01G518400 chr2D 96.262 107 3 1 7360 7465 609432903 609432797 2.920000e-39 174.0
11 TraesCS2A01G518400 chr2D 91.209 91 1 6 5892 5977 272795895 272795807 5.000000e-22 117.0
12 TraesCS2A01G518400 chr2B 95.701 4024 119 23 938 4930 743734360 743730360 0.000000e+00 6423.0
13 TraesCS2A01G518400 chr2B 95.212 1086 22 10 4964 6044 743730362 743729302 0.000000e+00 1690.0
14 TraesCS2A01G518400 chr2B 89.880 1334 68 30 6082 7354 743729304 743727977 0.000000e+00 1653.0
15 TraesCS2A01G518400 chr2B 94.577 922 47 3 1 921 36451866 36452785 0.000000e+00 1423.0
16 TraesCS2A01G518400 chr2B 88.525 549 57 5 376 922 1662508 1663052 0.000000e+00 660.0
17 TraesCS2A01G518400 chr2B 87.949 390 42 3 1 390 1659588 1659972 9.320000e-124 455.0
18 TraesCS2A01G518400 chr2B 92.275 233 16 2 1113 1344 181699323 181699554 5.890000e-86 329.0
19 TraesCS2A01G518400 chr2B 91.818 220 9 4 7670 7880 743727900 743727681 1.660000e-76 298.0
20 TraesCS2A01G518400 chr2B 97.115 104 3 0 818 921 520222790 520222687 8.130000e-40 176.0
21 TraesCS2A01G518400 chr2B 97.087 103 3 0 7360 7462 743727926 743727824 2.920000e-39 174.0
22 TraesCS2A01G518400 chr7D 95.983 921 35 2 1 920 442799623 442800542 0.000000e+00 1495.0
23 TraesCS2A01G518400 chr1B 92.849 923 49 4 1 921 664289483 664288576 0.000000e+00 1323.0
24 TraesCS2A01G518400 chr1B 89.513 267 16 5 1078 1344 217554382 217554636 2.120000e-85 327.0
25 TraesCS2A01G518400 chr4B 93.823 858 52 1 1 857 179801242 179802099 0.000000e+00 1290.0
26 TraesCS2A01G518400 chr4B 94.444 54 2 1 869 921 179738361 179738308 1.820000e-11 82.4
27 TraesCS2A01G518400 chr1A 90.285 772 68 4 156 925 564430593 564429827 0.000000e+00 1003.0
28 TraesCS2A01G518400 chr3A 94.035 285 17 0 5 289 141817019 141817303 4.370000e-117 433.0
29 TraesCS2A01G518400 chr6A 71.003 738 186 25 21 744 15889156 15889879 1.370000e-32 152.0
30 TraesCS2A01G518400 chr6A 92.222 90 1 6 5892 5977 445904343 445904256 1.070000e-23 122.0
31 TraesCS2A01G518400 chr5D 91.111 90 2 6 5892 5977 329122107 329122020 5.000000e-22 117.0
32 TraesCS2A01G518400 chr5D 97.143 35 0 1 7648 7682 377943337 377943370 3.070000e-04 58.4
33 TraesCS2A01G518400 chr3B 91.209 91 1 6 5892 5977 201525008 201525096 5.000000e-22 117.0
34 TraesCS2A01G518400 chrUn 90.217 92 1 7 5892 5977 23290155 23290066 6.460000e-21 113.0
35 TraesCS2A01G518400 chrUn 90.217 92 1 7 5892 5977 93411634 93411545 6.460000e-21 113.0
36 TraesCS2A01G518400 chr5B 96.875 32 1 0 7641 7672 451149366 451149397 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G518400 chr2A 742131277 742139156 7879 True 14552.000000 14552 100.0000 1 7880 1 chr2A.!!$R5 7879
1 TraesCS2A01G518400 chr2A 20374127 20374969 842 True 1114.000000 1114 90.5880 85 928 1 chr2A.!!$R1 843
2 TraesCS2A01G518400 chr2A 20382152 20382806 654 True 876.000000 876 90.8680 1 654 1 chr2A.!!$R2 653
3 TraesCS2A01G518400 chr2A 741416086 741417871 1785 True 235.000000 259 93.5870 6667 7101 2 chr2A.!!$R6 434
4 TraesCS2A01G518400 chr2D 609432797 609439865 7068 True 3507.333333 9527 95.8810 938 7465 3 chr2D.!!$R2 6527
5 TraesCS2A01G518400 chr2B 743727681 743734360 6679 True 2047.600000 6423 93.9396 938 7880 5 chr2B.!!$R2 6942
6 TraesCS2A01G518400 chr2B 36451866 36452785 919 False 1423.000000 1423 94.5770 1 921 1 chr2B.!!$F1 920
7 TraesCS2A01G518400 chr2B 1659588 1663052 3464 False 557.500000 660 88.2370 1 922 2 chr2B.!!$F3 921
8 TraesCS2A01G518400 chr7D 442799623 442800542 919 False 1495.000000 1495 95.9830 1 920 1 chr7D.!!$F1 919
9 TraesCS2A01G518400 chr1B 664288576 664289483 907 True 1323.000000 1323 92.8490 1 921 1 chr1B.!!$R1 920
10 TraesCS2A01G518400 chr4B 179801242 179802099 857 False 1290.000000 1290 93.8230 1 857 1 chr4B.!!$F1 856
11 TraesCS2A01G518400 chr1A 564429827 564430593 766 True 1003.000000 1003 90.2850 156 925 1 chr1A.!!$R1 769


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 205 1.477553 ATGGCGTTGGATGAAAGCAT 58.522 45.000 0.00 0.00 40.51 3.79 F
1033 3597 0.324460 TCAACAAACCCCAAACCCGT 60.324 50.000 0.00 0.00 0.00 5.28 F
1708 4572 1.610522 CTCTTTGTGGCAAGTCAAGGG 59.389 52.381 0.00 0.00 0.00 3.95 F
2453 5322 1.943340 GCCCTACTGTAAGAAGCATGC 59.057 52.381 10.51 10.51 37.43 4.06 F
2903 5776 3.134804 AGAGTGGGTATTTTCATCGAGGG 59.865 47.826 0.00 0.00 0.00 4.30 F
3462 6336 4.116238 GAGCACTAAAGATGACTGGCTAC 58.884 47.826 0.00 0.00 0.00 3.58 F
4982 7869 2.125106 CTTACCGCTCCCCACAGC 60.125 66.667 0.00 0.00 35.90 4.40 F
5272 8159 0.462581 GCAATGCGATGGTGAGGAGA 60.463 55.000 0.00 0.00 0.00 3.71 F
5535 8427 0.578683 CAGTTGTGTCACAGAGTGCG 59.421 55.000 5.67 0.00 32.98 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 4095 0.313987 GCCGAAAACAGGGGAAACAG 59.686 55.000 0.00 0.00 0.00 3.16 R
2411 5280 1.032014 AAACAATCACGCAAGGCAGT 58.968 45.000 0.00 0.00 46.39 4.40 R
2767 5636 1.134670 GCCTGGAGTAATCTGAAGCGT 60.135 52.381 0.00 0.00 0.00 5.07 R
4353 7227 2.955660 GGTTTCACCTGTTCCAACATCA 59.044 45.455 0.00 0.00 38.41 3.07 R
4481 7355 1.477700 ACCATGCTGCGCAACATATTT 59.522 42.857 24.66 10.06 43.62 1.40 R
5232 8119 1.490910 CCCAATCTACTGGTTCCCCTC 59.509 57.143 0.00 0.00 34.33 4.30 R
6651 9572 0.389817 CTTCGTCGCCCATGTCTTGA 60.390 55.000 0.00 0.00 0.00 3.02 R
6771 9695 0.752658 CATAGTCGTCCAGGGCATCA 59.247 55.000 0.00 0.00 0.00 3.07 R
7511 12134 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 7.657354 AGAAATGATTGCCTTTTTGGTAGAAAC 59.343 33.333 0.00 0.00 38.35 2.78
203 205 1.477553 ATGGCGTTGGATGAAAGCAT 58.522 45.000 0.00 0.00 40.51 3.79
260 262 6.479884 AGACTTATTCTCTCCAGCAAAACAT 58.520 36.000 0.00 0.00 0.00 2.71
336 338 6.635755 TCTTATTTCGGGGGCAAAAATTTAG 58.364 36.000 0.00 0.00 0.00 1.85
357 360 7.724305 TTAGTCTGACGCTTCTTTTAAATGT 57.276 32.000 1.52 0.00 0.00 2.71
359 362 7.352719 AGTCTGACGCTTCTTTTAAATGTAG 57.647 36.000 1.52 4.07 0.00 2.74
559 3114 4.017126 GCAAATTAGCCAACCTACCTTCT 58.983 43.478 0.00 0.00 0.00 2.85
562 3117 3.604875 TTAGCCAACCTACCTTCTTCG 57.395 47.619 0.00 0.00 0.00 3.79
617 3172 4.816786 GCAAAAATGTTTTGGCTGATGT 57.183 36.364 13.68 0.00 42.46 3.06
705 3260 7.124147 TCGCATGTATTCCATATATCCAGAGAA 59.876 37.037 0.00 0.00 30.71 2.87
719 3274 5.635278 TCCAGAGAAATCAATGGCATAGA 57.365 39.130 0.00 0.00 32.63 1.98
820 3376 1.833630 CTTGCCCTGTCATCTCCACTA 59.166 52.381 0.00 0.00 0.00 2.74
991 3553 4.401837 AGTCCTACATAAAACCGACTCTCC 59.598 45.833 0.00 0.00 0.00 3.71
1000 3562 1.915141 ACCGACTCTCCCTCGTTTTA 58.085 50.000 0.00 0.00 0.00 1.52
1005 3567 4.243270 CGACTCTCCCTCGTTTTATGTTT 58.757 43.478 0.00 0.00 0.00 2.83
1033 3597 0.324460 TCAACAAACCCCAAACCCGT 60.324 50.000 0.00 0.00 0.00 5.28
1090 3657 3.537874 CCCTCGATCGACCACCCC 61.538 72.222 15.15 0.00 0.00 4.95
1128 3695 4.081030 GCATCGGCATCGGCATCG 62.081 66.667 0.00 0.00 43.71 3.84
1516 4084 3.626222 CCGAGGGGTATTTTGGATTTCCA 60.626 47.826 0.00 0.00 45.94 3.53
1527 4095 3.287867 TGGATTTCCAGATTCCTGCTC 57.712 47.619 0.00 0.00 42.01 4.26
1529 4097 3.212685 GGATTTCCAGATTCCTGCTCTG 58.787 50.000 0.00 0.00 39.07 3.35
1531 4099 3.795688 TTTCCAGATTCCTGCTCTGTT 57.204 42.857 0.00 0.00 38.77 3.16
1549 4407 2.340673 TTTCCCCTGTTTTCGGCGGA 62.341 55.000 7.21 0.00 0.00 5.54
1607 4466 5.163622 GCTTGGCAGTCTAAAATTATGAGCA 60.164 40.000 0.00 0.00 0.00 4.26
1708 4572 1.610522 CTCTTTGTGGCAAGTCAAGGG 59.389 52.381 0.00 0.00 0.00 3.95
1853 4717 3.467803 AGTAGTGTGGAAGCAAGTGTTC 58.532 45.455 0.00 0.00 0.00 3.18
1861 4725 2.224314 GGAAGCAAGTGTTCCTTTCTCG 59.776 50.000 0.00 0.00 40.46 4.04
1879 4746 5.209818 TCTCGGTAAGAAGAACACAATGT 57.790 39.130 0.00 0.00 0.00 2.71
1971 4838 4.639334 ACTGCTGCATGATTACAGATAGG 58.361 43.478 1.31 0.00 35.90 2.57
2005 4872 4.460034 TGATTGAAAGTGTGATGGTGATGG 59.540 41.667 0.00 0.00 0.00 3.51
2021 4888 4.923281 GGTGATGGTTAGTTGCATGTTTTC 59.077 41.667 0.00 0.00 0.00 2.29
2029 4896 9.019656 TGGTTAGTTGCATGTTTTCTATTGTAT 57.980 29.630 0.00 0.00 0.00 2.29
2267 5135 5.333645 CCTTCTGTTCAGTCGTTTTCTCATG 60.334 44.000 0.00 0.00 0.00 3.07
2410 5279 6.826668 TGTTTTGATGATGTCCGAGGTATAT 58.173 36.000 0.00 0.00 0.00 0.86
2411 5280 7.958088 TGTTTTGATGATGTCCGAGGTATATA 58.042 34.615 0.00 0.00 0.00 0.86
2419 5288 3.572682 TGTCCGAGGTATATACTGCCTTG 59.427 47.826 12.54 5.65 40.55 3.61
2453 5322 1.943340 GCCCTACTGTAAGAAGCATGC 59.057 52.381 10.51 10.51 37.43 4.06
2461 5330 5.256474 ACTGTAAGAAGCATGCCTGTTAAT 58.744 37.500 15.66 0.00 37.43 1.40
2474 5343 8.299570 GCATGCCTGTTAATTAGCTGTATAATT 58.700 33.333 6.36 0.00 38.55 1.40
2526 5395 4.670221 GCCTTCGCTCTTTGTGACAATAAG 60.670 45.833 0.00 0.95 34.56 1.73
2767 5636 3.322541 TCTCACACGGTAAAGATTCCACA 59.677 43.478 0.00 0.00 0.00 4.17
2903 5776 3.134804 AGAGTGGGTATTTTCATCGAGGG 59.865 47.826 0.00 0.00 0.00 4.30
2976 5849 5.978814 AGGATCACCAGTTCATAGTGTAAC 58.021 41.667 0.00 0.00 38.94 2.50
3462 6336 4.116238 GAGCACTAAAGATGACTGGCTAC 58.884 47.826 0.00 0.00 0.00 3.58
4481 7355 4.995487 ACTGAGTATGACGACGATAGCATA 59.005 41.667 0.00 1.39 42.67 3.14
4602 7488 3.438087 CACTAGCCACCATGTCTTCAAAG 59.562 47.826 0.00 0.00 0.00 2.77
4940 7827 4.023536 TCGTTAAAGTTGCCTTTGGTGATC 60.024 41.667 0.00 0.00 41.03 2.92
4941 7828 4.261405 CGTTAAAGTTGCCTTTGGTGATCA 60.261 41.667 0.00 0.00 41.03 2.92
4982 7869 2.125106 CTTACCGCTCCCCACAGC 60.125 66.667 0.00 0.00 35.90 4.40
5272 8159 0.462581 GCAATGCGATGGTGAGGAGA 60.463 55.000 0.00 0.00 0.00 3.71
5361 8248 1.270625 TGTTGCTCAAGTTAGACGGGG 60.271 52.381 0.00 0.00 0.00 5.73
5363 8250 1.192146 TGCTCAAGTTAGACGGGGCT 61.192 55.000 0.00 0.00 0.00 5.19
5535 8427 0.578683 CAGTTGTGTCACAGAGTGCG 59.421 55.000 5.67 0.00 32.98 5.34
5536 8428 1.154205 AGTTGTGTCACAGAGTGCGC 61.154 55.000 5.67 0.00 32.98 6.09
5537 8429 2.237066 TTGTGTCACAGAGTGCGCG 61.237 57.895 0.00 0.00 32.98 6.86
5538 8430 2.658593 GTGTCACAGAGTGCGCGT 60.659 61.111 8.43 0.00 32.98 6.01
5539 8431 2.658268 TGTCACAGAGTGCGCGTG 60.658 61.111 8.43 4.24 32.98 5.34
5540 8432 2.354656 GTCACAGAGTGCGCGTGA 60.355 61.111 8.43 10.46 37.33 4.35
5541 8433 2.354656 TCACAGAGTGCGCGTGAC 60.355 61.111 8.43 4.98 34.83 3.67
5542 8434 2.658268 CACAGAGTGCGCGTGACA 60.658 61.111 8.43 0.00 32.23 3.58
5543 8435 2.355126 ACAGAGTGCGCGTGACAG 60.355 61.111 8.43 2.34 0.00 3.51
5544 8436 2.050077 CAGAGTGCGCGTGACAGA 60.050 61.111 8.43 0.00 0.00 3.41
5545 8437 2.085262 CAGAGTGCGCGTGACAGAG 61.085 63.158 8.43 0.00 0.00 3.35
5546 8438 2.255554 GAGTGCGCGTGACAGAGA 59.744 61.111 8.43 0.00 0.00 3.10
5547 8439 1.799519 GAGTGCGCGTGACAGAGAG 60.800 63.158 8.43 0.00 0.00 3.20
5548 8440 2.049985 GTGCGCGTGACAGAGAGT 60.050 61.111 8.43 0.00 0.00 3.24
5788 8707 6.757897 TTGTCAGAACTTCTCAAAACATGT 57.242 33.333 0.00 0.00 0.00 3.21
6003 8922 5.628666 GCATCTATTCCTAGCAGCCATACAT 60.629 44.000 0.00 0.00 0.00 2.29
6045 8964 5.360591 AGTTGTCTTGTGGAGAAAGTGTAG 58.639 41.667 0.00 0.00 35.79 2.74
6072 8991 5.564550 AGGAAACTTCATGCTGATACTTGT 58.435 37.500 0.00 0.00 37.44 3.16
6160 9079 4.500477 GCACTCCGCATAAATGAAAATGAC 59.500 41.667 0.00 0.00 41.79 3.06
6272 9191 4.080356 TCCTACCAAGATGCTATGCAGTTT 60.080 41.667 0.00 0.00 43.65 2.66
6279 9198 7.037438 CCAAGATGCTATGCAGTTTTTAACAT 58.963 34.615 0.00 0.00 43.65 2.71
6380 9299 7.546667 GGGTTTAACACATTCGTCATTACTCTA 59.453 37.037 0.00 0.00 0.00 2.43
6528 9449 4.103785 CCACCACAGATCCCAGATCTAAAT 59.896 45.833 6.78 0.00 0.00 1.40
6631 9552 1.986210 GCAGAAGCTGGGGCCAATT 60.986 57.895 4.39 0.00 39.73 2.32
6632 9553 1.547472 GCAGAAGCTGGGGCCAATTT 61.547 55.000 4.39 0.00 39.73 1.82
6636 9557 2.027385 GAAGCTGGGGCCAATTTAGAG 58.973 52.381 4.39 0.00 39.73 2.43
6651 9572 4.640771 TTTAGAGGCTGTGAACCAAGAT 57.359 40.909 0.00 0.00 0.00 2.40
6685 9609 1.834263 ACGAAGAGGAGGAGGATTTGG 59.166 52.381 0.00 0.00 0.00 3.28
6771 9695 4.681978 GCCAACGAGCTGACGGGT 62.682 66.667 0.00 0.00 37.61 5.28
6795 9719 1.139058 GCCCTGGACGACTATGACATT 59.861 52.381 0.00 0.00 0.00 2.71
6852 9780 1.220477 GAGCCTTCTGGAGTCTGCC 59.780 63.158 0.00 0.00 34.57 4.85
6853 9781 2.125350 GCCTTCTGGAGTCTGCCG 60.125 66.667 0.00 0.00 34.57 5.69
6854 9782 2.125350 CCTTCTGGAGTCTGCCGC 60.125 66.667 0.00 0.00 34.57 6.53
6881 9818 1.280133 TGCTGCTGGTAGCTCTTGATT 59.720 47.619 11.49 0.00 42.97 2.57
6889 9826 3.261643 TGGTAGCTCTTGATTTGCAGAGA 59.738 43.478 2.78 0.00 0.00 3.10
7024 11364 0.315869 CGTGACACGTGAAAACCTGC 60.316 55.000 25.01 2.40 36.74 4.85
7068 11408 2.602257 TTATGGACCGCATCTCACTG 57.398 50.000 0.00 0.00 0.00 3.66
7188 11541 4.559862 AGCTGCTCAATAGGTTTACTGT 57.440 40.909 0.00 0.00 0.00 3.55
7285 11669 2.230992 AGCGCATGTGCTAAAAATCCAA 59.769 40.909 31.53 0.00 45.14 3.53
7343 11920 2.299993 ACTCACATACATGGAGCACG 57.700 50.000 0.00 0.00 32.10 5.34
7357 11934 4.258702 GGAGCACGTCCATATGTAATCT 57.741 45.455 1.24 0.00 46.10 2.40
7358 11935 4.238514 GGAGCACGTCCATATGTAATCTC 58.761 47.826 1.24 1.06 46.10 2.75
7415 12038 3.339253 GCCCAAGCTCCAAAATGAATT 57.661 42.857 0.00 0.00 35.50 2.17
7438 12061 9.643693 AATTACCTTTTGAAATCATAGTGCAAG 57.356 29.630 0.00 0.00 0.00 4.01
7439 12062 5.473039 ACCTTTTGAAATCATAGTGCAAGC 58.527 37.500 0.00 0.00 0.00 4.01
7440 12063 5.010922 ACCTTTTGAAATCATAGTGCAAGCA 59.989 36.000 0.00 0.00 0.00 3.91
7441 12064 6.103997 CCTTTTGAAATCATAGTGCAAGCAT 58.896 36.000 0.00 0.00 0.00 3.79
7442 12065 6.035650 CCTTTTGAAATCATAGTGCAAGCATG 59.964 38.462 0.00 0.00 0.00 4.06
7443 12066 4.642445 TGAAATCATAGTGCAAGCATGG 57.358 40.909 0.00 0.00 0.00 3.66
7444 12067 3.382227 TGAAATCATAGTGCAAGCATGGG 59.618 43.478 0.00 0.00 0.00 4.00
7445 12068 2.742428 ATCATAGTGCAAGCATGGGT 57.258 45.000 0.00 0.00 0.00 4.51
7446 12069 3.862877 ATCATAGTGCAAGCATGGGTA 57.137 42.857 0.00 0.00 0.00 3.69
7447 12070 3.198409 TCATAGTGCAAGCATGGGTAG 57.802 47.619 0.00 0.00 0.00 3.18
7448 12071 2.771372 TCATAGTGCAAGCATGGGTAGA 59.229 45.455 0.00 0.00 0.00 2.59
7449 12072 3.199727 TCATAGTGCAAGCATGGGTAGAA 59.800 43.478 0.00 0.00 0.00 2.10
7450 12073 2.584835 AGTGCAAGCATGGGTAGAAA 57.415 45.000 0.00 0.00 0.00 2.52
7451 12074 3.091633 AGTGCAAGCATGGGTAGAAAT 57.908 42.857 0.00 0.00 0.00 2.17
7452 12075 3.019564 AGTGCAAGCATGGGTAGAAATC 58.980 45.455 0.00 0.00 0.00 2.17
7453 12076 2.016318 TGCAAGCATGGGTAGAAATCG 58.984 47.619 0.00 0.00 0.00 3.34
7454 12077 2.017049 GCAAGCATGGGTAGAAATCGT 58.983 47.619 0.00 0.00 0.00 3.73
7455 12078 2.032178 GCAAGCATGGGTAGAAATCGTC 59.968 50.000 0.00 0.00 0.00 4.20
7456 12079 3.270027 CAAGCATGGGTAGAAATCGTCA 58.730 45.455 0.00 0.00 0.00 4.35
7457 12080 2.906354 AGCATGGGTAGAAATCGTCAC 58.094 47.619 0.00 0.00 0.00 3.67
7458 12081 2.501723 AGCATGGGTAGAAATCGTCACT 59.498 45.455 0.00 0.00 0.00 3.41
7459 12082 3.055094 AGCATGGGTAGAAATCGTCACTT 60.055 43.478 0.00 0.00 0.00 3.16
7460 12083 3.689649 GCATGGGTAGAAATCGTCACTTT 59.310 43.478 0.00 0.00 0.00 2.66
7461 12084 4.156008 GCATGGGTAGAAATCGTCACTTTT 59.844 41.667 0.00 0.00 0.00 2.27
7462 12085 5.631026 CATGGGTAGAAATCGTCACTTTTG 58.369 41.667 0.00 0.00 0.00 2.44
7463 12086 4.963373 TGGGTAGAAATCGTCACTTTTGA 58.037 39.130 0.00 0.00 0.00 2.69
7464 12087 5.369833 TGGGTAGAAATCGTCACTTTTGAA 58.630 37.500 0.00 0.00 31.90 2.69
7465 12088 5.823570 TGGGTAGAAATCGTCACTTTTGAAA 59.176 36.000 0.00 0.00 31.90 2.69
7466 12089 6.319152 TGGGTAGAAATCGTCACTTTTGAAAA 59.681 34.615 0.00 0.00 31.90 2.29
7467 12090 7.013846 TGGGTAGAAATCGTCACTTTTGAAAAT 59.986 33.333 0.00 0.00 31.90 1.82
7468 12091 7.865889 GGGTAGAAATCGTCACTTTTGAAAATT 59.134 33.333 0.00 0.00 31.90 1.82
7469 12092 9.244799 GGTAGAAATCGTCACTTTTGAAAATTT 57.755 29.630 0.00 0.00 33.72 1.82
7472 12095 9.796120 AGAAATCGTCACTTTTGAAAATTTACA 57.204 25.926 0.00 0.00 32.31 2.41
7475 12098 9.743057 AATCGTCACTTTTGAAAATTTACATGA 57.257 25.926 0.00 0.00 31.90 3.07
7476 12099 9.743057 ATCGTCACTTTTGAAAATTTACATGAA 57.257 25.926 0.00 0.00 31.90 2.57
7477 12100 9.743057 TCGTCACTTTTGAAAATTTACATGAAT 57.257 25.926 0.00 0.00 31.90 2.57
7496 12119 9.439500 ACATGAATTACCTTTTGAAAATCCATG 57.561 29.630 0.00 0.00 33.52 3.66
7497 12120 9.656040 CATGAATTACCTTTTGAAAATCCATGA 57.344 29.630 0.00 0.00 0.00 3.07
7503 12126 9.844257 TTACCTTTTGAAAATCCATGAATTTGT 57.156 25.926 0.00 0.00 0.00 2.83
7504 12127 8.750515 ACCTTTTGAAAATCCATGAATTTGTT 57.249 26.923 0.00 0.00 0.00 2.83
7505 12128 9.187996 ACCTTTTGAAAATCCATGAATTTGTTT 57.812 25.926 0.00 0.00 0.00 2.83
7515 12138 9.558396 AATCCATGAATTTGTTTTTGTATGTGT 57.442 25.926 0.00 0.00 0.00 3.72
7516 12139 8.362860 TCCATGAATTTGTTTTTGTATGTGTG 57.637 30.769 0.00 0.00 0.00 3.82
7517 12140 7.984050 TCCATGAATTTGTTTTTGTATGTGTGT 59.016 29.630 0.00 0.00 0.00 3.72
7518 12141 8.063038 CCATGAATTTGTTTTTGTATGTGTGTG 58.937 33.333 0.00 0.00 0.00 3.82
7519 12142 8.602328 CATGAATTTGTTTTTGTATGTGTGTGT 58.398 29.630 0.00 0.00 0.00 3.72
7520 12143 7.957615 TGAATTTGTTTTTGTATGTGTGTGTG 58.042 30.769 0.00 0.00 0.00 3.82
7521 12144 7.600375 TGAATTTGTTTTTGTATGTGTGTGTGT 59.400 29.630 0.00 0.00 0.00 3.72
7522 12145 6.696825 TTTGTTTTTGTATGTGTGTGTGTG 57.303 33.333 0.00 0.00 0.00 3.82
7523 12146 5.378292 TGTTTTTGTATGTGTGTGTGTGT 57.622 34.783 0.00 0.00 0.00 3.72
7524 12147 5.157067 TGTTTTTGTATGTGTGTGTGTGTG 58.843 37.500 0.00 0.00 0.00 3.82
7525 12148 5.157781 GTTTTTGTATGTGTGTGTGTGTGT 58.842 37.500 0.00 0.00 0.00 3.72
7526 12149 4.348198 TTTGTATGTGTGTGTGTGTGTG 57.652 40.909 0.00 0.00 0.00 3.82
7527 12150 2.979240 TGTATGTGTGTGTGTGTGTGT 58.021 42.857 0.00 0.00 0.00 3.72
7528 12151 2.675348 TGTATGTGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
7529 12152 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
7530 12153 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7531 12154 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7532 12155 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7533 12156 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7534 12157 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7535 12158 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7536 12159 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7537 12160 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7538 12161 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7539 12162 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7540 12163 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7541 12164 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7542 12165 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7543 12166 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7544 12167 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7545 12168 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7546 12169 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7547 12170 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7548 12171 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
7549 12172 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
7550 12173 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
7551 12174 1.533299 TGTGTGTGTGTGTGTGTGTTC 59.467 47.619 0.00 0.00 0.00 3.18
7552 12175 1.533299 GTGTGTGTGTGTGTGTGTTCA 59.467 47.619 0.00 0.00 0.00 3.18
7553 12176 1.533299 TGTGTGTGTGTGTGTGTTCAC 59.467 47.619 0.00 0.00 44.08 3.18
7569 12192 8.324163 GTGTGTTCACATCTTAAATTACTCCT 57.676 34.615 8.87 0.00 43.37 3.69
7570 12193 9.431887 GTGTGTTCACATCTTAAATTACTCCTA 57.568 33.333 8.87 0.00 43.37 2.94
7596 12219 8.795786 TGAAAATTTACAAACATGTAGAGCAC 57.204 30.769 0.00 0.00 0.00 4.40
7597 12220 8.409371 TGAAAATTTACAAACATGTAGAGCACA 58.591 29.630 0.00 0.00 42.69 4.57
7599 12222 8.970691 AAATTTACAAACATGTAGAGCACATC 57.029 30.769 0.00 0.00 44.99 3.06
7600 12223 6.494893 TTTACAAACATGTAGAGCACATCC 57.505 37.500 0.00 0.00 44.99 3.51
7601 12224 4.019792 ACAAACATGTAGAGCACATCCA 57.980 40.909 0.00 0.00 44.99 3.41
7602 12225 4.592942 ACAAACATGTAGAGCACATCCAT 58.407 39.130 0.00 0.00 44.99 3.41
7603 12226 5.744171 ACAAACATGTAGAGCACATCCATA 58.256 37.500 0.00 0.00 44.99 2.74
7604 12227 6.359804 ACAAACATGTAGAGCACATCCATAT 58.640 36.000 0.00 0.00 44.99 1.78
7605 12228 6.261603 ACAAACATGTAGAGCACATCCATATG 59.738 38.462 0.00 0.00 44.99 1.78
7606 12229 5.557576 ACATGTAGAGCACATCCATATGT 57.442 39.130 0.00 0.00 44.99 2.29
7607 12230 6.670695 ACATGTAGAGCACATCCATATGTA 57.329 37.500 0.00 0.00 44.99 2.29
7608 12231 6.459066 ACATGTAGAGCACATCCATATGTAC 58.541 40.000 0.00 0.00 44.99 2.90
7609 12232 6.041979 ACATGTAGAGCACATCCATATGTACA 59.958 38.462 0.00 0.00 44.99 2.90
7610 12233 6.670695 TGTAGAGCACATCCATATGTACAT 57.329 37.500 13.93 13.93 44.70 2.29
7611 12234 6.458210 TGTAGAGCACATCCATATGTACATG 58.542 40.000 18.81 3.94 44.70 3.21
7612 12235 5.557576 AGAGCACATCCATATGTACATGT 57.442 39.130 18.81 9.13 44.70 3.21
7613 12236 6.670695 AGAGCACATCCATATGTACATGTA 57.329 37.500 18.81 0.08 44.70 2.29
7614 12237 6.695429 AGAGCACATCCATATGTACATGTAG 58.305 40.000 18.81 5.12 44.70 2.74
7615 12238 6.494835 AGAGCACATCCATATGTACATGTAGA 59.505 38.462 18.81 10.78 44.70 2.59
7616 12239 7.179872 AGAGCACATCCATATGTACATGTAGAT 59.820 37.037 18.81 18.47 44.70 1.98
7617 12240 7.683578 AGCACATCCATATGTACATGTAGATT 58.316 34.615 19.49 6.39 44.70 2.40
7618 12241 8.159447 AGCACATCCATATGTACATGTAGATTT 58.841 33.333 19.49 10.07 44.70 2.17
7619 12242 8.786898 GCACATCCATATGTACATGTAGATTTT 58.213 33.333 19.49 6.58 44.70 1.82
7660 12283 9.780413 TTTTTCTTCGGAATTTTCAAAAATTGG 57.220 25.926 16.03 9.22 45.70 3.16
7661 12284 7.489574 TTCTTCGGAATTTTCAAAAATTGGG 57.510 32.000 16.03 8.94 45.70 4.12
7662 12285 5.468409 TCTTCGGAATTTTCAAAAATTGGGC 59.532 36.000 16.03 4.50 45.70 5.36
7663 12286 4.967036 TCGGAATTTTCAAAAATTGGGCT 58.033 34.783 16.03 0.00 45.70 5.19
7664 12287 4.994217 TCGGAATTTTCAAAAATTGGGCTC 59.006 37.500 16.03 3.95 45.70 4.70
7665 12288 4.154015 CGGAATTTTCAAAAATTGGGCTCC 59.846 41.667 16.03 10.56 45.70 4.70
7666 12289 5.069318 GGAATTTTCAAAAATTGGGCTCCA 58.931 37.500 16.03 0.00 45.70 3.86
7667 12290 5.711506 GGAATTTTCAAAAATTGGGCTCCAT 59.288 36.000 16.03 0.00 45.70 3.41
7668 12291 6.209192 GGAATTTTCAAAAATTGGGCTCCATT 59.791 34.615 16.03 0.00 45.70 3.16
7669 12292 6.578163 ATTTTCAAAAATTGGGCTCCATTG 57.422 33.333 0.00 0.00 35.16 2.82
7670 12293 4.970860 TTCAAAAATTGGGCTCCATTGA 57.029 36.364 4.72 4.72 30.12 2.57
7671 12294 4.540359 TCAAAAATTGGGCTCCATTGAG 57.460 40.909 4.72 0.00 41.84 3.02
7672 12295 3.261390 TCAAAAATTGGGCTCCATTGAGG 59.739 43.478 0.00 0.00 39.14 3.86
7673 12296 2.629017 AAATTGGGCTCCATTGAGGT 57.371 45.000 0.00 0.00 39.14 3.85
7674 12297 2.629017 AATTGGGCTCCATTGAGGTT 57.371 45.000 0.00 0.00 39.14 3.50
7675 12298 1.856629 ATTGGGCTCCATTGAGGTTG 58.143 50.000 0.00 0.00 39.14 3.77
7676 12299 0.251742 TTGGGCTCCATTGAGGTTGG 60.252 55.000 0.00 0.00 39.14 3.77
7677 12300 1.139498 TGGGCTCCATTGAGGTTGGA 61.139 55.000 0.00 0.00 40.96 3.53
7681 12304 1.691219 TCCATTGAGGTTGGAGCCC 59.309 57.895 0.00 0.00 38.35 5.19
7682 12305 1.139498 TCCATTGAGGTTGGAGCCCA 61.139 55.000 0.00 0.00 38.35 5.36
7683 12306 0.251742 CCATTGAGGTTGGAGCCCAA 60.252 55.000 2.84 2.84 41.69 4.12
7684 12307 1.180029 CATTGAGGTTGGAGCCCAAG 58.820 55.000 6.88 0.00 44.82 3.61
7696 12319 2.669878 GCCCAAGCTCCAAAATGGA 58.330 52.632 1.24 0.00 45.98 3.41
7709 12332 6.491714 TCCAAAATGGATCACCTTTTGAAA 57.508 33.333 19.79 10.35 42.67 2.69
7710 12333 7.077050 TCCAAAATGGATCACCTTTTGAAAT 57.923 32.000 19.79 0.00 42.67 2.17
7711 12334 7.160726 TCCAAAATGGATCACCTTTTGAAATC 58.839 34.615 19.79 0.00 42.67 2.17
7712 12335 6.935771 CCAAAATGGATCACCTTTTGAAATCA 59.064 34.615 19.79 0.00 40.96 2.57
7713 12336 7.608761 CCAAAATGGATCACCTTTTGAAATCAT 59.391 33.333 19.79 0.00 40.96 2.45
7714 12337 9.656040 CAAAATGGATCACCTTTTGAAATCATA 57.344 29.630 15.86 0.00 41.31 2.15
7715 12338 9.880157 AAAATGGATCACCTTTTGAAATCATAG 57.120 29.630 0.00 0.00 40.88 2.23
7716 12339 8.599624 AATGGATCACCTTTTGAAATCATAGT 57.400 30.769 0.00 0.00 37.92 2.12
7717 12340 7.630242 TGGATCACCTTTTGAAATCATAGTC 57.370 36.000 0.00 0.00 37.92 2.59
7718 12341 7.405292 TGGATCACCTTTTGAAATCATAGTCT 58.595 34.615 0.00 0.00 37.92 3.24
7719 12342 8.548025 TGGATCACCTTTTGAAATCATAGTCTA 58.452 33.333 0.00 0.00 37.92 2.59
7720 12343 9.396022 GGATCACCTTTTGAAATCATAGTCTAA 57.604 33.333 0.00 0.00 37.92 2.10
7785 12411 1.615392 AGTTGTTCAAGGGAGCATTGC 59.385 47.619 0.00 0.00 34.05 3.56
7786 12412 0.597568 TTGTTCAAGGGAGCATTGCG 59.402 50.000 2.38 0.00 34.05 4.85
7795 12421 1.019278 GGAGCATTGCGGACGAGAAA 61.019 55.000 2.38 0.00 0.00 2.52
7832 12459 6.187682 CCAGGATAAATAGTTTGAGGTTGGT 58.812 40.000 0.00 0.00 0.00 3.67
7837 12464 7.066645 GGATAAATAGTTTGAGGTTGGTACACC 59.933 40.741 0.00 0.00 39.29 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 6.830873 AAAACCTGATGAGGAGAAGAATTG 57.169 37.500 4.75 0.00 42.93 2.32
203 205 5.046878 TCAGGAGAGGCGTCATTAAGTTTAA 60.047 40.000 9.41 0.00 0.00 1.52
216 218 2.202987 GCACCATCAGGAGAGGCG 60.203 66.667 0.00 0.00 38.69 5.52
260 262 3.314080 CGGCAAAAGAGTGGAGTTTGTAA 59.686 43.478 0.00 0.00 35.22 2.41
336 338 7.347508 TCTACATTTAAAAGAAGCGTCAGAC 57.652 36.000 1.61 0.00 0.00 3.51
357 360 3.383825 GCGTTAGACCTGGGATCTTTCTA 59.616 47.826 0.00 0.00 0.00 2.10
359 362 2.093658 TGCGTTAGACCTGGGATCTTTC 60.094 50.000 0.00 0.00 0.00 2.62
559 3114 4.122776 GCCAAAGAGAGATTATCAGCGAA 58.877 43.478 0.00 0.00 0.00 4.70
562 3117 6.293353 GCTTTAGCCAAAGAGAGATTATCAGC 60.293 42.308 8.93 0.00 43.32 4.26
606 3161 2.827322 CCAAGGAATCACATCAGCCAAA 59.173 45.455 0.00 0.00 0.00 3.28
617 3172 4.507710 CTTTCTGATCGACCAAGGAATCA 58.492 43.478 0.00 0.00 0.00 2.57
687 3242 9.696572 CCATTGATTTCTCTGGATATATGGAAT 57.303 33.333 0.00 0.00 28.84 3.01
705 3260 4.957954 ACATTGTGGTCTATGCCATTGATT 59.042 37.500 0.00 0.00 41.08 2.57
719 3274 2.573462 ACCTGATGAGCTACATTGTGGT 59.427 45.455 0.00 0.33 39.56 4.16
787 3342 3.327757 ACAGGGCAAGTTGAGTGAGAATA 59.672 43.478 7.16 0.00 0.00 1.75
820 3376 3.508793 CCCTGAATGTTGCAAGAAGACAT 59.491 43.478 0.00 0.00 35.65 3.06
928 3488 6.540914 TCTTCGGCGTGAGGATTTTATTTTAT 59.459 34.615 6.85 0.00 0.00 1.40
929 3489 5.875910 TCTTCGGCGTGAGGATTTTATTTTA 59.124 36.000 6.85 0.00 0.00 1.52
930 3490 4.698304 TCTTCGGCGTGAGGATTTTATTTT 59.302 37.500 6.85 0.00 0.00 1.82
931 3491 4.094442 GTCTTCGGCGTGAGGATTTTATTT 59.906 41.667 6.85 0.00 34.90 1.40
932 3492 3.621715 GTCTTCGGCGTGAGGATTTTATT 59.378 43.478 6.85 0.00 34.90 1.40
933 3493 3.195661 GTCTTCGGCGTGAGGATTTTAT 58.804 45.455 6.85 0.00 34.90 1.40
934 3494 2.613691 GTCTTCGGCGTGAGGATTTTA 58.386 47.619 6.85 0.00 34.90 1.52
935 3495 1.439679 GTCTTCGGCGTGAGGATTTT 58.560 50.000 6.85 0.00 34.90 1.82
936 3496 0.391263 GGTCTTCGGCGTGAGGATTT 60.391 55.000 6.85 0.00 34.90 2.17
964 3524 5.903810 AGTCGGTTTTATGTAGGACTCATC 58.096 41.667 0.00 0.00 29.30 2.92
966 3526 5.320549 GAGTCGGTTTTATGTAGGACTCA 57.679 43.478 12.61 0.00 45.90 3.41
991 3553 5.637006 TGGGATTGAAACATAAAACGAGG 57.363 39.130 0.00 0.00 0.00 4.63
1000 3562 5.512921 GGGTTTGTTGATGGGATTGAAACAT 60.513 40.000 0.00 0.00 31.34 2.71
1005 3567 2.158249 TGGGGTTTGTTGATGGGATTGA 60.158 45.455 0.00 0.00 0.00 2.57
1033 3597 2.553466 CGAGTTGTGGGGGATTTTGGTA 60.553 50.000 0.00 0.00 0.00 3.25
1422 3989 4.200283 GAGTGCTCCTCCTCCGCG 62.200 72.222 0.00 0.00 33.79 6.46
1502 4070 6.197168 AGCAGGAATCTGGAAATCCAAAATA 58.803 36.000 3.35 0.00 46.97 1.40
1503 4071 5.028131 AGCAGGAATCTGGAAATCCAAAAT 58.972 37.500 3.35 0.00 46.97 1.82
1516 4084 1.283321 GGGGAAACAGAGCAGGAATCT 59.717 52.381 0.00 0.00 0.00 2.40
1523 4091 2.306847 GAAAACAGGGGAAACAGAGCA 58.693 47.619 0.00 0.00 0.00 4.26
1524 4092 1.266989 CGAAAACAGGGGAAACAGAGC 59.733 52.381 0.00 0.00 0.00 4.09
1525 4093 1.880027 CCGAAAACAGGGGAAACAGAG 59.120 52.381 0.00 0.00 0.00 3.35
1526 4094 1.975660 CCGAAAACAGGGGAAACAGA 58.024 50.000 0.00 0.00 0.00 3.41
1527 4095 0.313987 GCCGAAAACAGGGGAAACAG 59.686 55.000 0.00 0.00 0.00 3.16
1529 4097 1.284715 CGCCGAAAACAGGGGAAAC 59.715 57.895 0.00 0.00 43.49 2.78
1531 4099 2.281900 CCGCCGAAAACAGGGGAA 60.282 61.111 0.69 0.00 43.49 3.97
1607 4466 6.959639 ATAGAATAAAACAATGGCATCGGT 57.040 33.333 0.00 0.00 0.00 4.69
1708 4572 1.279271 ACACATCCTGTTGACTAGGGC 59.721 52.381 0.00 0.00 35.96 5.19
1853 4717 4.628074 TGTGTTCTTCTTACCGAGAAAGG 58.372 43.478 0.00 0.00 43.56 3.11
1861 4725 6.929606 AGACTGTACATTGTGTTCTTCTTACC 59.070 38.462 0.00 0.00 0.00 2.85
1879 4746 8.029522 GTGAGTTTCTGAATCATACAGACTGTA 58.970 37.037 17.43 17.43 42.84 2.74
1971 4838 2.053627 CTTTCAATCAAGGCACGCAAC 58.946 47.619 0.00 0.00 0.00 4.17
2029 4896 9.378551 CACCTATCTTGTGCTACTAACATTTTA 57.621 33.333 0.00 0.00 0.00 1.52
2048 4915 5.783111 ACAAACATTTGCTTTCCACCTATC 58.217 37.500 4.25 0.00 41.79 2.08
2256 5124 9.953825 GAATAGTACAAACTACATGAGAAAACG 57.046 33.333 0.00 0.00 40.98 3.60
2267 5135 8.759641 CATGATGAGCTGAATAGTACAAACTAC 58.240 37.037 0.00 0.00 40.98 2.73
2410 5279 1.890876 AACAATCACGCAAGGCAGTA 58.109 45.000 0.00 0.00 46.39 2.74
2411 5280 1.032014 AAACAATCACGCAAGGCAGT 58.968 45.000 0.00 0.00 46.39 4.40
2419 5288 2.030274 AGTAGGGCAAAAACAATCACGC 60.030 45.455 0.00 0.00 0.00 5.34
2461 5330 8.367911 CAGATGGGTCAGTAATTATACAGCTAA 58.632 37.037 0.00 0.00 34.29 3.09
2526 5395 4.631813 ACGATTCAAGTTACCTCAATGAGC 59.368 41.667 4.40 0.00 0.00 4.26
2767 5636 1.134670 GCCTGGAGTAATCTGAAGCGT 60.135 52.381 0.00 0.00 0.00 5.07
2903 5776 9.273016 TCTAAATGCAGCAATTAGTTATCTACC 57.727 33.333 23.77 0.00 31.18 3.18
3316 6190 5.661312 AGCACTGATATGGTACTAAGGTCAA 59.339 40.000 0.00 0.00 0.00 3.18
3462 6336 8.815141 AGAGATCAACAGAAGATTGAATATCG 57.185 34.615 0.00 0.00 39.43 2.92
3838 6712 3.193267 GTGCAATAAAGCCAGATTGGTCA 59.807 43.478 0.00 0.00 40.46 4.02
4333 7207 6.015180 ACATCATGCACCAACAATAAAACTCT 60.015 34.615 0.00 0.00 0.00 3.24
4336 7210 6.347563 CCAACATCATGCACCAACAATAAAAC 60.348 38.462 0.00 0.00 0.00 2.43
4353 7227 2.955660 GGTTTCACCTGTTCCAACATCA 59.044 45.455 0.00 0.00 38.41 3.07
4481 7355 1.477700 ACCATGCTGCGCAACATATTT 59.522 42.857 24.66 10.06 43.62 1.40
4602 7488 4.396166 GTGGTATATGACTGCCATATTGCC 59.604 45.833 1.76 6.17 43.97 4.52
4940 7827 2.354109 AGCTCTGACGTACATGTGTG 57.646 50.000 9.11 2.88 0.00 3.82
4941 7828 2.159366 GCTAGCTCTGACGTACATGTGT 60.159 50.000 9.11 0.00 0.00 3.72
5175 8062 4.254709 ACGCCTGCAAGCAGACCA 62.255 61.111 22.76 0.00 46.30 4.02
5230 8117 2.482494 CAATCTACTGGTTCCCCTCCT 58.518 52.381 0.00 0.00 0.00 3.69
5232 8119 1.490910 CCCAATCTACTGGTTCCCCTC 59.509 57.143 0.00 0.00 34.33 4.30
5272 8159 3.205282 CCATAGGTTTCATCCTCCCCTTT 59.795 47.826 0.00 0.00 38.86 3.11
5361 8248 6.109359 CCATATAAGTAGGACCTTGCATAGC 58.891 44.000 0.00 0.00 0.00 2.97
5363 8250 8.730093 TTACCATATAAGTAGGACCTTGCATA 57.270 34.615 0.00 0.00 0.00 3.14
5539 8431 3.486708 CGCTATGTGTCTGACTCTCTGTC 60.487 52.174 9.51 0.00 45.54 3.51
5540 8432 2.421775 CGCTATGTGTCTGACTCTCTGT 59.578 50.000 9.51 0.00 0.00 3.41
5541 8433 2.421775 ACGCTATGTGTCTGACTCTCTG 59.578 50.000 9.51 1.73 0.00 3.35
5542 8434 2.421775 CACGCTATGTGTCTGACTCTCT 59.578 50.000 9.51 0.83 43.88 3.10
5543 8435 2.791567 CACGCTATGTGTCTGACTCTC 58.208 52.381 9.51 0.91 43.88 3.20
5544 8436 2.929531 CACGCTATGTGTCTGACTCT 57.070 50.000 9.51 0.00 43.88 3.24
5788 8707 1.985159 ACTGGTGAGAATGCCCACTTA 59.015 47.619 0.00 0.00 33.99 2.24
5979 8898 2.847327 TGGCTGCTAGGAATAGATGC 57.153 50.000 0.00 0.00 0.00 3.91
6003 8922 7.924412 AGACAACTAAAGACACGTCTAAATCAA 59.076 33.333 0.00 0.00 39.39 2.57
6072 8991 4.139859 TCGGTTACAAACAGAAACAGGA 57.860 40.909 0.00 0.00 32.68 3.86
6272 9191 9.883142 AATGACAGAACAAAAGGAAATGTTAAA 57.117 25.926 0.00 0.00 39.73 1.52
6279 9198 6.154363 AGTGGAAATGACAGAACAAAAGGAAA 59.846 34.615 0.00 0.00 0.00 3.13
6389 9310 9.516314 TGTAAGTCTATTTCATCTGTAACGATG 57.484 33.333 0.00 0.00 41.64 3.84
6395 9316 7.789831 AGGGGATGTAAGTCTATTTCATCTGTA 59.210 37.037 7.02 0.00 36.27 2.74
6396 9317 6.617371 AGGGGATGTAAGTCTATTTCATCTGT 59.383 38.462 7.02 0.00 36.27 3.41
6416 9337 0.543410 TGGCAAGACGTAGAAGGGGA 60.543 55.000 0.00 0.00 0.00 4.81
6501 9422 3.338250 GGGATCTGTGGTGGGGCA 61.338 66.667 0.00 0.00 0.00 5.36
6631 9552 3.582647 TGATCTTGGTTCACAGCCTCTAA 59.417 43.478 0.00 0.00 0.00 2.10
6632 9553 3.173151 TGATCTTGGTTCACAGCCTCTA 58.827 45.455 0.00 0.00 0.00 2.43
6636 9557 2.485814 GTCTTGATCTTGGTTCACAGCC 59.514 50.000 0.00 0.00 0.00 4.85
6651 9572 0.389817 CTTCGTCGCCCATGTCTTGA 60.390 55.000 0.00 0.00 0.00 3.02
6685 9609 2.509561 GCCCGCTTCTTCCTCGAC 60.510 66.667 0.00 0.00 0.00 4.20
6771 9695 0.752658 CATAGTCGTCCAGGGCATCA 59.247 55.000 0.00 0.00 0.00 3.07
6795 9719 1.375396 CCCTTCATTGGCGACGTCA 60.375 57.895 17.16 0.00 0.00 4.35
6869 9806 7.727331 ATATTCTCTGCAAATCAAGAGCTAC 57.273 36.000 0.00 0.00 0.00 3.58
7068 11408 7.886405 ACAGAAGAAAAGGAACTCGTAATAC 57.114 36.000 0.00 0.00 38.49 1.89
7188 11541 2.297033 GGTTACAACAGAGGACGTGGTA 59.703 50.000 0.00 0.00 0.00 3.25
7301 11692 6.816640 AGTAATTTAAGATGCGAGCTACACAA 59.183 34.615 0.00 0.00 0.00 3.33
7312 11703 9.056005 TCCATGTATGTGAGTAATTTAAGATGC 57.944 33.333 0.00 0.00 0.00 3.91
7343 11920 5.012561 AGCCTCCAAGAGATTACATATGGAC 59.987 44.000 7.80 0.00 33.61 4.02
7415 12038 6.208402 TGCTTGCACTATGATTTCAAAAGGTA 59.792 34.615 0.00 0.00 0.00 3.08
7438 12061 2.906354 AGTGACGATTTCTACCCATGC 58.094 47.619 0.00 0.00 0.00 4.06
7439 12062 5.411361 TCAAAAGTGACGATTTCTACCCATG 59.589 40.000 0.00 0.00 0.00 3.66
7440 12063 5.556915 TCAAAAGTGACGATTTCTACCCAT 58.443 37.500 0.00 0.00 0.00 4.00
7441 12064 4.963373 TCAAAAGTGACGATTTCTACCCA 58.037 39.130 0.00 0.00 0.00 4.51
7442 12065 5.934935 TTCAAAAGTGACGATTTCTACCC 57.065 39.130 0.00 0.00 31.90 3.69
7443 12066 8.797266 AATTTTCAAAAGTGACGATTTCTACC 57.203 30.769 0.00 0.00 31.90 3.18
7446 12069 9.796120 TGTAAATTTTCAAAAGTGACGATTTCT 57.204 25.926 0.00 0.00 33.66 2.52
7449 12072 9.743057 TCATGTAAATTTTCAAAAGTGACGATT 57.257 25.926 1.36 0.00 31.90 3.34
7450 12073 9.743057 TTCATGTAAATTTTCAAAAGTGACGAT 57.257 25.926 1.36 0.00 31.90 3.73
7451 12074 9.743057 ATTCATGTAAATTTTCAAAAGTGACGA 57.257 25.926 1.36 0.00 31.90 4.20
7470 12093 9.439500 CATGGATTTTCAAAAGGTAATTCATGT 57.561 29.630 0.00 0.00 38.39 3.21
7471 12094 9.656040 TCATGGATTTTCAAAAGGTAATTCATG 57.344 29.630 0.00 0.00 41.88 3.07
7477 12100 9.844257 ACAAATTCATGGATTTTCAAAAGGTAA 57.156 25.926 9.38 0.00 0.00 2.85
7478 12101 9.844257 AACAAATTCATGGATTTTCAAAAGGTA 57.156 25.926 9.38 0.00 0.00 3.08
7479 12102 8.750515 AACAAATTCATGGATTTTCAAAAGGT 57.249 26.923 9.38 0.26 0.00 3.50
7489 12112 9.558396 ACACATACAAAAACAAATTCATGGATT 57.442 25.926 0.00 0.00 0.00 3.01
7490 12113 8.991026 CACACATACAAAAACAAATTCATGGAT 58.009 29.630 0.00 0.00 0.00 3.41
7491 12114 7.984050 ACACACATACAAAAACAAATTCATGGA 59.016 29.630 0.00 0.00 0.00 3.41
7492 12115 8.063038 CACACACATACAAAAACAAATTCATGG 58.937 33.333 0.00 0.00 0.00 3.66
7493 12116 8.602328 ACACACACATACAAAAACAAATTCATG 58.398 29.630 0.00 0.00 0.00 3.07
7494 12117 8.602328 CACACACACATACAAAAACAAATTCAT 58.398 29.630 0.00 0.00 0.00 2.57
7495 12118 7.600375 ACACACACACATACAAAAACAAATTCA 59.400 29.630 0.00 0.00 0.00 2.57
7496 12119 7.897291 CACACACACACATACAAAAACAAATTC 59.103 33.333 0.00 0.00 0.00 2.17
7497 12120 7.386299 ACACACACACACATACAAAAACAAATT 59.614 29.630 0.00 0.00 0.00 1.82
7498 12121 6.870965 ACACACACACACATACAAAAACAAAT 59.129 30.769 0.00 0.00 0.00 2.32
7499 12122 6.144563 CACACACACACACATACAAAAACAAA 59.855 34.615 0.00 0.00 0.00 2.83
7500 12123 5.631096 CACACACACACACATACAAAAACAA 59.369 36.000 0.00 0.00 0.00 2.83
7501 12124 5.157067 CACACACACACACATACAAAAACA 58.843 37.500 0.00 0.00 0.00 2.83
7502 12125 5.060323 CACACACACACACACATACAAAAAC 59.940 40.000 0.00 0.00 0.00 2.43
7503 12126 5.157067 CACACACACACACACATACAAAAA 58.843 37.500 0.00 0.00 0.00 1.94
7504 12127 4.216472 ACACACACACACACACATACAAAA 59.784 37.500 0.00 0.00 0.00 2.44
7505 12128 3.753797 ACACACACACACACACATACAAA 59.246 39.130 0.00 0.00 0.00 2.83
7506 12129 3.126000 CACACACACACACACACATACAA 59.874 43.478 0.00 0.00 0.00 2.41
7507 12130 2.675348 CACACACACACACACACATACA 59.325 45.455 0.00 0.00 0.00 2.29
7508 12131 2.675844 ACACACACACACACACACATAC 59.324 45.455 0.00 0.00 0.00 2.39
7509 12132 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
7510 12133 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
7511 12134 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7512 12135 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7513 12136 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7514 12137 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7515 12138 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7516 12139 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7517 12140 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7518 12141 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7519 12142 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7520 12143 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7521 12144 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7522 12145 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7523 12146 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7524 12147 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7525 12148 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7526 12149 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7527 12150 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7528 12151 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7529 12152 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
7530 12153 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
7531 12154 1.533299 GAACACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
7532 12155 1.533299 TGAACACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
7533 12156 1.533299 GTGAACACACACACACACACA 59.467 47.619 0.00 0.00 40.11 3.72
7534 12157 1.533299 TGTGAACACACACACACACAC 59.467 47.619 3.39 0.00 44.29 3.82
7535 12158 1.884235 TGTGAACACACACACACACA 58.116 45.000 3.39 0.00 44.29 3.72
7542 12165 8.015658 GGAGTAATTTAAGATGTGAACACACAC 58.984 37.037 9.83 7.62 45.33 3.82
7543 12166 7.936847 AGGAGTAATTTAAGATGTGAACACACA 59.063 33.333 9.83 5.55 45.05 3.72
7544 12167 8.324163 AGGAGTAATTTAAGATGTGAACACAC 57.676 34.615 9.83 4.93 45.05 3.82
7570 12193 9.410556 GTGCTCTACATGTTTGTAAATTTTCAT 57.589 29.630 2.30 0.00 37.86 2.57
7571 12194 8.409371 TGTGCTCTACATGTTTGTAAATTTTCA 58.591 29.630 2.30 0.00 37.86 2.69
7572 12195 8.795786 TGTGCTCTACATGTTTGTAAATTTTC 57.204 30.769 2.30 0.00 37.86 2.29
7587 12210 6.041979 ACATGTACATATGGATGTGCTCTACA 59.958 38.462 8.32 3.82 46.11 2.74
7588 12211 6.459066 ACATGTACATATGGATGTGCTCTAC 58.541 40.000 8.32 0.00 46.11 2.59
7589 12212 6.670695 ACATGTACATATGGATGTGCTCTA 57.329 37.500 8.32 0.00 46.11 2.43
7590 12213 5.557576 ACATGTACATATGGATGTGCTCT 57.442 39.130 8.32 0.00 46.11 4.09
7591 12214 6.691508 TCTACATGTACATATGGATGTGCTC 58.308 40.000 19.69 0.00 46.11 4.26
7592 12215 6.670695 TCTACATGTACATATGGATGTGCT 57.329 37.500 19.69 5.69 46.11 4.40
7593 12216 7.912056 AATCTACATGTACATATGGATGTGC 57.088 36.000 13.06 0.32 46.11 4.57
7634 12257 9.780413 CCAATTTTTGAAAATTCCGAAGAAAAA 57.220 25.926 10.59 0.00 44.38 1.94
7635 12258 8.401709 CCCAATTTTTGAAAATTCCGAAGAAAA 58.598 29.630 10.59 0.00 44.38 2.29
7636 12259 7.467947 GCCCAATTTTTGAAAATTCCGAAGAAA 60.468 33.333 10.59 0.00 44.38 2.52
7637 12260 6.017523 GCCCAATTTTTGAAAATTCCGAAGAA 60.018 34.615 10.59 0.00 44.38 2.52
7638 12261 5.468409 GCCCAATTTTTGAAAATTCCGAAGA 59.532 36.000 10.59 0.00 44.38 2.87
7639 12262 5.469760 AGCCCAATTTTTGAAAATTCCGAAG 59.530 36.000 10.59 1.84 44.38 3.79
7640 12263 5.372373 AGCCCAATTTTTGAAAATTCCGAA 58.628 33.333 10.59 0.00 44.38 4.30
7641 12264 4.967036 AGCCCAATTTTTGAAAATTCCGA 58.033 34.783 10.59 0.00 44.38 4.55
7642 12265 4.154015 GGAGCCCAATTTTTGAAAATTCCG 59.846 41.667 10.59 6.12 44.38 4.30
7643 12266 5.069318 TGGAGCCCAATTTTTGAAAATTCC 58.931 37.500 10.59 9.57 44.38 3.01
7644 12267 6.822667 ATGGAGCCCAATTTTTGAAAATTC 57.177 33.333 10.59 2.47 44.38 2.17
7645 12268 6.776603 TCAATGGAGCCCAATTTTTGAAAATT 59.223 30.769 8.27 8.27 46.42 1.82
7646 12269 6.305411 TCAATGGAGCCCAATTTTTGAAAAT 58.695 32.000 0.00 0.00 40.15 1.82
7647 12270 5.688807 TCAATGGAGCCCAATTTTTGAAAA 58.311 33.333 0.00 0.00 36.95 2.29
7648 12271 5.301835 TCAATGGAGCCCAATTTTTGAAA 57.698 34.783 0.00 0.00 36.95 2.69
7649 12272 4.262981 CCTCAATGGAGCCCAATTTTTGAA 60.263 41.667 0.00 0.00 39.96 2.69
7650 12273 3.261390 CCTCAATGGAGCCCAATTTTTGA 59.739 43.478 0.00 3.66 39.96 2.69
7651 12274 3.008266 ACCTCAATGGAGCCCAATTTTTG 59.992 43.478 0.00 0.00 39.96 2.44
7652 12275 3.250617 ACCTCAATGGAGCCCAATTTTT 58.749 40.909 0.00 0.00 39.96 1.94
7653 12276 2.906568 ACCTCAATGGAGCCCAATTTT 58.093 42.857 0.00 0.00 39.96 1.82
7654 12277 2.568509 CAACCTCAATGGAGCCCAATTT 59.431 45.455 0.00 0.00 39.96 1.82
7655 12278 2.181975 CAACCTCAATGGAGCCCAATT 58.818 47.619 0.00 0.00 39.96 2.32
7656 12279 1.620524 CCAACCTCAATGGAGCCCAAT 60.621 52.381 0.00 0.00 40.56 3.16
7657 12280 0.251742 CCAACCTCAATGGAGCCCAA 60.252 55.000 0.00 0.00 40.56 4.12
7658 12281 1.139498 TCCAACCTCAATGGAGCCCA 61.139 55.000 0.00 0.00 41.98 5.36
7659 12282 1.691219 TCCAACCTCAATGGAGCCC 59.309 57.895 0.00 0.00 41.98 5.19
7663 12286 1.139498 TGGGCTCCAACCTCAATGGA 61.139 55.000 0.00 0.00 44.58 3.41
7664 12287 0.251742 TTGGGCTCCAACCTCAATGG 60.252 55.000 2.84 0.00 38.75 3.16
7665 12288 1.180029 CTTGGGCTCCAACCTCAATG 58.820 55.000 2.84 0.00 38.75 2.82
7666 12289 0.613012 GCTTGGGCTCCAACCTCAAT 60.613 55.000 2.84 0.00 38.75 2.57
7667 12290 1.228552 GCTTGGGCTCCAACCTCAA 60.229 57.895 2.84 0.00 38.75 3.02
7668 12291 2.436109 GCTTGGGCTCCAACCTCA 59.564 61.111 2.84 0.00 38.75 3.86
7678 12301 2.669878 TCCATTTTGGAGCTTGGGC 58.330 52.632 0.10 0.00 42.67 5.36
7687 12310 6.935771 TGATTTCAAAAGGTGATCCATTTTGG 59.064 34.615 22.34 11.76 39.44 3.28
7688 12311 7.966246 TGATTTCAAAAGGTGATCCATTTTG 57.034 32.000 19.33 19.33 39.81 2.44
7689 12312 9.880157 CTATGATTTCAAAAGGTGATCCATTTT 57.120 29.630 0.00 0.00 35.70 1.82
7690 12313 9.039165 ACTATGATTTCAAAAGGTGATCCATTT 57.961 29.630 0.00 0.00 35.70 2.32
7691 12314 8.599624 ACTATGATTTCAAAAGGTGATCCATT 57.400 30.769 0.00 0.00 35.70 3.16
7692 12315 8.057623 AGACTATGATTTCAAAAGGTGATCCAT 58.942 33.333 0.00 0.00 35.70 3.41
7693 12316 7.405292 AGACTATGATTTCAAAAGGTGATCCA 58.595 34.615 0.00 0.00 35.70 3.41
7694 12317 7.872113 AGACTATGATTTCAAAAGGTGATCC 57.128 36.000 0.00 0.00 35.70 3.36
7696 12319 9.178758 GGTTAGACTATGATTTCAAAAGGTGAT 57.821 33.333 0.00 0.00 35.70 3.06
7697 12320 8.160765 TGGTTAGACTATGATTTCAAAAGGTGA 58.839 33.333 0.00 0.00 0.00 4.02
7698 12321 8.335532 TGGTTAGACTATGATTTCAAAAGGTG 57.664 34.615 0.00 0.00 0.00 4.00
7699 12322 8.960591 CATGGTTAGACTATGATTTCAAAAGGT 58.039 33.333 0.00 0.00 39.12 3.50
7700 12323 8.408601 CCATGGTTAGACTATGATTTCAAAAGG 58.591 37.037 2.57 0.00 39.12 3.11
7701 12324 8.408601 CCCATGGTTAGACTATGATTTCAAAAG 58.591 37.037 11.73 0.00 39.12 2.27
7702 12325 7.893302 ACCCATGGTTAGACTATGATTTCAAAA 59.107 33.333 11.73 0.00 39.12 2.44
7703 12326 7.410174 ACCCATGGTTAGACTATGATTTCAAA 58.590 34.615 11.73 0.00 39.12 2.69
7704 12327 6.969043 ACCCATGGTTAGACTATGATTTCAA 58.031 36.000 11.73 0.00 39.12 2.69
7705 12328 6.575244 ACCCATGGTTAGACTATGATTTCA 57.425 37.500 11.73 0.00 39.12 2.69
7706 12329 7.963532 TCTACCCATGGTTAGACTATGATTTC 58.036 38.462 14.65 0.00 39.12 2.17
7707 12330 7.931015 TCTACCCATGGTTAGACTATGATTT 57.069 36.000 14.65 0.00 39.12 2.17
7708 12331 7.931015 TTCTACCCATGGTTAGACTATGATT 57.069 36.000 17.98 0.00 39.12 2.57
7709 12332 7.931015 TTTCTACCCATGGTTAGACTATGAT 57.069 36.000 17.98 0.00 39.12 2.45
7710 12333 7.255836 CGATTTCTACCCATGGTTAGACTATGA 60.256 40.741 17.98 1.20 39.12 2.15
7711 12334 6.868864 CGATTTCTACCCATGGTTAGACTATG 59.131 42.308 17.98 6.07 36.90 2.23
7712 12335 6.553852 ACGATTTCTACCCATGGTTAGACTAT 59.446 38.462 17.98 13.96 37.09 2.12
7713 12336 5.895534 ACGATTTCTACCCATGGTTAGACTA 59.104 40.000 17.98 10.07 37.09 2.59
7714 12337 4.715297 ACGATTTCTACCCATGGTTAGACT 59.285 41.667 17.98 9.08 37.09 3.24
7715 12338 5.019785 ACGATTTCTACCCATGGTTAGAC 57.980 43.478 17.98 6.89 37.09 2.59
7716 12339 4.712829 TGACGATTTCTACCCATGGTTAGA 59.287 41.667 14.65 14.65 37.09 2.10
7717 12340 4.809426 GTGACGATTTCTACCCATGGTTAG 59.191 45.833 10.02 10.02 37.09 2.34
7718 12341 4.468510 AGTGACGATTTCTACCCATGGTTA 59.531 41.667 11.73 0.00 37.09 2.85
7719 12342 3.263425 AGTGACGATTTCTACCCATGGTT 59.737 43.478 11.73 0.00 37.09 3.67
7720 12343 2.838202 AGTGACGATTTCTACCCATGGT 59.162 45.455 11.73 1.30 40.16 3.55
7785 12411 4.267928 GTGATGTAATTCCTTTCTCGTCCG 59.732 45.833 0.00 0.00 0.00 4.79
7786 12412 4.571176 GGTGATGTAATTCCTTTCTCGTCC 59.429 45.833 0.00 0.00 0.00 4.79
7795 12421 8.949421 ACTATTTATCCTGGTGATGTAATTCCT 58.051 33.333 0.00 0.00 34.76 3.36
7832 12459 6.375830 TGGAAGGTGTAATTGTATGGTGTA 57.624 37.500 0.00 0.00 0.00 2.90
7837 12464 5.392595 CCGGTTTGGAAGGTGTAATTGTATG 60.393 44.000 0.00 0.00 42.00 2.39



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.