Multiple sequence alignment - TraesCS2A01G517900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G517900 chr2A 100.000 5992 0 0 1 5992 741366680 741372671 0.000000e+00 11066.0
1 TraesCS2A01G517900 chr2A 83.725 639 82 16 25 645 745423580 745424214 8.650000e-163 584.0
2 TraesCS2A01G517900 chr2A 96.053 152 6 0 4998 5149 747156660 747156811 1.290000e-61 248.0
3 TraesCS2A01G517900 chr2A 94.400 125 6 1 5023 5147 758354706 758354583 2.200000e-44 191.0
4 TraesCS2A01G517900 chr2D 93.487 2687 106 25 2345 4997 609421025 609423676 0.000000e+00 3928.0
5 TraesCS2A01G517900 chr2D 91.233 2133 117 28 1 2076 609418913 609421032 0.000000e+00 2839.0
6 TraesCS2A01G517900 chr2D 85.189 898 92 28 2551 3423 609287705 609288586 0.000000e+00 883.0
7 TraesCS2A01G517900 chr2D 82.727 550 61 19 953 1492 609286648 609287173 5.470000e-125 459.0
8 TraesCS2A01G517900 chr2D 83.368 475 31 10 5507 5976 609424249 609424680 4.350000e-106 396.0
9 TraesCS2A01G517900 chr2B 88.689 1892 118 33 258 2076 743689160 743691028 0.000000e+00 2220.0
10 TraesCS2A01G517900 chr2B 91.304 1541 72 28 2512 4021 743691218 743692727 0.000000e+00 2047.0
11 TraesCS2A01G517900 chr2B 91.102 753 41 13 4146 4876 743692995 743693743 0.000000e+00 996.0
12 TraesCS2A01G517900 chr2B 86.242 894 53 26 5148 5992 743693922 743694794 0.000000e+00 905.0
13 TraesCS2A01G517900 chr2B 88.107 412 33 12 2551 2950 743334011 743334418 5.430000e-130 475.0
14 TraesCS2A01G517900 chr2B 96.721 183 6 0 2345 2527 743691021 743691203 7.540000e-79 305.0
15 TraesCS2A01G517900 chr2B 95.455 88 4 0 4911 4998 743693844 743693931 2.250000e-29 141.0
16 TraesCS2A01G517900 chr7A 88.025 643 67 5 1 635 205106222 205106862 0.000000e+00 752.0
17 TraesCS2A01G517900 chr7A 82.390 636 95 12 25 645 117548534 117547901 6.830000e-149 538.0
18 TraesCS2A01G517900 chr7A 82.271 643 94 15 25 651 125652174 125651536 6.830000e-149 538.0
19 TraesCS2A01G517900 chr3A 87.234 658 66 7 1 651 75639981 75640627 0.000000e+00 734.0
20 TraesCS2A01G517900 chr7D 83.750 640 90 11 25 651 514101081 514100443 1.440000e-165 593.0
21 TraesCS2A01G517900 chr7D 82.567 631 94 13 25 642 514115291 514114664 5.280000e-150 542.0
22 TraesCS2A01G517900 chr7B 81.543 661 98 17 1 651 321391220 321390574 1.910000e-144 523.0
23 TraesCS2A01G517900 chr1B 93.878 147 9 0 5001 5147 328979006 328979152 7.820000e-54 222.0
24 TraesCS2A01G517900 chr4B 96.875 32 1 0 4998 5029 660098223 660098254 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G517900 chr2A 741366680 741372671 5991 False 11066.000000 11066 100.000000 1 5992 1 chr2A.!!$F1 5991
1 TraesCS2A01G517900 chr2A 745423580 745424214 634 False 584.000000 584 83.725000 25 645 1 chr2A.!!$F2 620
2 TraesCS2A01G517900 chr2D 609418913 609424680 5767 False 2387.666667 3928 89.362667 1 5976 3 chr2D.!!$F2 5975
3 TraesCS2A01G517900 chr2D 609286648 609288586 1938 False 671.000000 883 83.958000 953 3423 2 chr2D.!!$F1 2470
4 TraesCS2A01G517900 chr2B 743689160 743694794 5634 False 1102.333333 2220 91.585500 258 5992 6 chr2B.!!$F2 5734
5 TraesCS2A01G517900 chr7A 205106222 205106862 640 False 752.000000 752 88.025000 1 635 1 chr7A.!!$F1 634
6 TraesCS2A01G517900 chr7A 117547901 117548534 633 True 538.000000 538 82.390000 25 645 1 chr7A.!!$R1 620
7 TraesCS2A01G517900 chr7A 125651536 125652174 638 True 538.000000 538 82.271000 25 651 1 chr7A.!!$R2 626
8 TraesCS2A01G517900 chr3A 75639981 75640627 646 False 734.000000 734 87.234000 1 651 1 chr3A.!!$F1 650
9 TraesCS2A01G517900 chr7D 514100443 514101081 638 True 593.000000 593 83.750000 25 651 1 chr7D.!!$R1 626
10 TraesCS2A01G517900 chr7D 514114664 514115291 627 True 542.000000 542 82.567000 25 642 1 chr7D.!!$R2 617
11 TraesCS2A01G517900 chr7B 321390574 321391220 646 True 523.000000 523 81.543000 1 651 1 chr7B.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 398 0.039256 GTGATGCGCCATGTTGTTGT 60.039 50.0 4.18 0.00 0.00 3.32 F
1530 1638 0.447801 AGATGATTTTCGTGCGGCAC 59.552 50.0 22.78 22.78 0.00 5.01 F
2195 2354 0.174617 TCGTGCCATGACGCAGATTA 59.825 50.0 0.00 0.00 40.05 1.75 F
2196 2355 1.006086 CGTGCCATGACGCAGATTAA 58.994 50.0 0.00 0.00 40.05 1.40 F
2428 2587 1.180029 CTGGCTACCATTGCTTTGCT 58.820 50.0 0.00 0.00 30.82 3.91 F
3449 3704 1.425412 GCATGCTGCTTGAAACAAGG 58.575 50.0 18.44 0.00 40.96 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2335 0.174617 TAATCTGCGTCATGGCACGA 59.825 50.000 10.81 5.21 42.69 4.35 R
2345 2504 1.002430 TGGTTGGTTGCAACAAAAGCA 59.998 42.857 29.82 29.82 40.85 3.91 R
3579 3834 1.270518 GCCTTCTCTGACTTCAGCACA 60.271 52.381 0.99 0.00 43.46 4.57 R
3633 3888 1.963515 GACAAACCAAATCCAGGTGCT 59.036 47.619 0.00 0.00 39.86 4.40 R
4332 4802 1.227999 TGCGTAAAGACACAGCCTGC 61.228 55.000 0.00 0.00 0.00 4.85 R
5099 5662 0.026803 GGACGATTTCTGCACGATGC 59.973 55.000 0.24 0.00 45.29 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.482446 TGGGGATGTGCTTTGGTTCT 59.518 50.000 0.00 0.00 0.00 3.01
186 193 3.117888 CACCCAGCTACCCTAATGTGATT 60.118 47.826 0.00 0.00 0.00 2.57
209 216 4.285863 TGGTGGAAGTTGTTTCAGGAAAT 58.714 39.130 0.00 0.00 37.54 2.17
252 266 4.734614 CAGGATGATACTGCAGCTCGCA 62.735 54.545 15.27 7.63 45.63 5.10
347 361 1.270732 GCTCGATCTGCATTGGATCCT 60.271 52.381 14.23 0.00 37.02 3.24
353 367 4.382362 CGATCTGCATTGGATCCTAGCATA 60.382 45.833 21.06 16.32 37.02 3.14
384 398 0.039256 GTGATGCGCCATGTTGTTGT 60.039 50.000 4.18 0.00 0.00 3.32
452 473 2.682494 GCGGTGGTGGGGACTAGA 60.682 66.667 0.00 0.00 0.00 2.43
463 484 2.573869 GACTAGAGCCGCACTGCA 59.426 61.111 0.00 0.00 0.00 4.41
502 528 1.886655 GCGGACAGGGGATTCTGTTTT 60.887 52.381 0.00 0.00 46.76 2.43
545 571 3.118112 AGGAAGTAATGGCCTGATCAGTG 60.118 47.826 21.11 13.38 0.00 3.66
628 655 2.851263 TGTTTCTAACACATCCGCCT 57.149 45.000 0.00 0.00 36.25 5.52
765 792 1.012086 TGCATCAAGATTCTCGCAGC 58.988 50.000 0.00 0.00 0.00 5.25
979 1013 3.492353 CCCCACCGATCCAGGCAT 61.492 66.667 0.00 0.00 33.69 4.40
1068 1108 4.120755 CTCCTGCCCCCTTCCAGC 62.121 72.222 0.00 0.00 0.00 4.85
1354 1418 4.217118 CCACTTCCTCTTGTTTGATCCTTG 59.783 45.833 0.00 0.00 0.00 3.61
1387 1451 1.202382 TGAGCTGCTGATGACTGATCG 60.202 52.381 7.01 0.00 33.17 3.69
1396 1470 4.355437 CTGATGACTGATCGTACCTTGTC 58.645 47.826 0.00 0.00 33.17 3.18
1522 1630 1.332997 GGGCTGCTGAGATGATTTTCG 59.667 52.381 0.00 0.00 0.00 3.46
1528 1636 0.726827 TGAGATGATTTTCGTGCGGC 59.273 50.000 0.00 0.00 0.00 6.53
1530 1638 0.447801 AGATGATTTTCGTGCGGCAC 59.552 50.000 22.78 22.78 0.00 5.01
1569 1682 3.181507 GGTACGTAGTGCGACTGTGAATA 60.182 47.826 7.88 0.00 46.45 1.75
1630 1743 2.426738 TGAAAAAGTGTGGCAGACCTTG 59.573 45.455 11.60 0.00 36.63 3.61
1671 1784 7.936584 TCTCGAAACAAGTGTTGGATATTTTT 58.063 30.769 0.00 0.00 38.44 1.94
1709 1828 9.698309 ATGTATCCTCACTTTTGATAGTAATCG 57.302 33.333 0.00 0.00 34.60 3.34
1745 1880 5.422666 TGTTGCTGCTATAAAATCGATGG 57.577 39.130 0.00 0.00 0.00 3.51
1751 1909 3.563808 TGCTATAAAATCGATGGGTGTGC 59.436 43.478 0.00 1.18 0.00 4.57
1766 1924 3.947841 TGCGCTGCGTTGTGTTCC 61.948 61.111 24.04 4.48 0.00 3.62
1770 1928 1.279840 GCTGCGTTGTGTTCCTCAC 59.720 57.895 0.00 0.00 46.31 3.51
1815 1974 3.181488 TGTTCCATGTTCTGCAAACACAG 60.181 43.478 14.04 10.69 39.12 3.66
1816 1975 1.337703 TCCATGTTCTGCAAACACAGC 59.662 47.619 14.04 0.00 37.59 4.40
1957 2116 3.621558 GGTTATGGCTCAGGTTAGCTTT 58.378 45.455 0.00 0.00 42.37 3.51
1965 2124 3.309954 GCTCAGGTTAGCTTTATTGACCG 59.690 47.826 0.00 0.00 39.50 4.79
1967 2126 3.006940 CAGGTTAGCTTTATTGACCGCA 58.993 45.455 0.00 0.00 35.56 5.69
1972 2131 6.546034 AGGTTAGCTTTATTGACCGCATATTT 59.454 34.615 0.00 0.00 35.56 1.40
2015 2174 7.447238 ACAACTAGCTGTTCTTATTTTGCCTTA 59.553 33.333 0.00 0.00 36.63 2.69
2136 2295 9.981460 AAATGGGTTTCTTCTATCTTGATAACT 57.019 29.630 0.00 0.00 0.00 2.24
2163 2322 6.969993 TTTGGTTACAAAGTTTAGAGCCAT 57.030 33.333 5.64 0.00 41.42 4.40
2165 2324 7.443259 TTGGTTACAAAGTTTAGAGCCATAC 57.557 36.000 5.64 0.00 32.66 2.39
2166 2325 6.775708 TGGTTACAAAGTTTAGAGCCATACT 58.224 36.000 1.68 0.00 0.00 2.12
2167 2326 7.228590 TGGTTACAAAGTTTAGAGCCATACTT 58.771 34.615 1.68 0.00 32.52 2.24
2168 2327 7.722285 TGGTTACAAAGTTTAGAGCCATACTTT 59.278 33.333 0.00 0.00 40.42 2.66
2169 2328 9.223099 GGTTACAAAGTTTAGAGCCATACTTTA 57.777 33.333 0.00 0.00 38.41 1.85
2173 2332 9.167311 ACAAAGTTTAGAGCCATACTTTATCTG 57.833 33.333 0.00 0.00 38.41 2.90
2174 2333 9.383519 CAAAGTTTAGAGCCATACTTTATCTGA 57.616 33.333 0.00 0.00 38.41 3.27
2175 2334 9.959721 AAAGTTTAGAGCCATACTTTATCTGAA 57.040 29.630 0.00 0.00 38.62 3.02
2177 2336 9.771534 AGTTTAGAGCCATACTTTATCTGAATC 57.228 33.333 0.00 0.00 0.00 2.52
2178 2337 8.704234 GTTTAGAGCCATACTTTATCTGAATCG 58.296 37.037 0.00 0.00 0.00 3.34
2179 2338 6.412362 AGAGCCATACTTTATCTGAATCGT 57.588 37.500 0.00 0.00 0.00 3.73
2180 2339 6.219473 AGAGCCATACTTTATCTGAATCGTG 58.781 40.000 0.00 0.00 0.00 4.35
2181 2340 4.752101 AGCCATACTTTATCTGAATCGTGC 59.248 41.667 0.00 0.00 0.00 5.34
2182 2341 4.083802 GCCATACTTTATCTGAATCGTGCC 60.084 45.833 0.00 0.00 0.00 5.01
2183 2342 5.056480 CCATACTTTATCTGAATCGTGCCA 58.944 41.667 0.00 0.00 0.00 4.92
2184 2343 5.702670 CCATACTTTATCTGAATCGTGCCAT 59.297 40.000 0.00 0.00 0.00 4.40
2185 2344 6.347969 CCATACTTTATCTGAATCGTGCCATG 60.348 42.308 0.00 0.00 0.00 3.66
2186 2345 4.769688 ACTTTATCTGAATCGTGCCATGA 58.230 39.130 0.00 0.00 0.00 3.07
2187 2346 4.572389 ACTTTATCTGAATCGTGCCATGAC 59.428 41.667 0.00 0.00 0.00 3.06
2188 2347 1.575244 ATCTGAATCGTGCCATGACG 58.425 50.000 0.00 0.00 40.83 4.35
2189 2348 1.083806 TCTGAATCGTGCCATGACGC 61.084 55.000 0.00 0.00 39.27 5.19
2190 2349 1.360931 CTGAATCGTGCCATGACGCA 61.361 55.000 0.00 0.00 39.27 5.24
2191 2350 1.349627 GAATCGTGCCATGACGCAG 59.650 57.895 0.00 0.00 40.05 5.18
2192 2351 1.079197 AATCGTGCCATGACGCAGA 60.079 52.632 0.00 0.00 40.05 4.26
2193 2352 0.462581 AATCGTGCCATGACGCAGAT 60.463 50.000 0.00 0.00 40.05 2.90
2194 2353 0.462581 ATCGTGCCATGACGCAGATT 60.463 50.000 0.00 0.00 40.05 2.40
2195 2354 0.174617 TCGTGCCATGACGCAGATTA 59.825 50.000 0.00 0.00 40.05 1.75
2196 2355 1.006086 CGTGCCATGACGCAGATTAA 58.994 50.000 0.00 0.00 40.05 1.40
2197 2356 1.267532 CGTGCCATGACGCAGATTAAC 60.268 52.381 0.00 0.00 40.05 2.01
2198 2357 1.737236 GTGCCATGACGCAGATTAACA 59.263 47.619 0.00 0.00 40.05 2.41
2199 2358 2.161410 GTGCCATGACGCAGATTAACAA 59.839 45.455 0.00 0.00 40.05 2.83
2200 2359 2.161410 TGCCATGACGCAGATTAACAAC 59.839 45.455 0.00 0.00 33.92 3.32
2201 2360 2.477863 GCCATGACGCAGATTAACAACC 60.478 50.000 0.00 0.00 0.00 3.77
2202 2361 3.009723 CCATGACGCAGATTAACAACCT 58.990 45.455 0.00 0.00 0.00 3.50
2203 2362 3.063997 CCATGACGCAGATTAACAACCTC 59.936 47.826 0.00 0.00 0.00 3.85
2204 2363 2.333926 TGACGCAGATTAACAACCTCG 58.666 47.619 0.00 0.00 0.00 4.63
2205 2364 2.029739 TGACGCAGATTAACAACCTCGA 60.030 45.455 0.00 0.00 0.00 4.04
2206 2365 2.991190 GACGCAGATTAACAACCTCGAA 59.009 45.455 0.00 0.00 0.00 3.71
2207 2366 2.735134 ACGCAGATTAACAACCTCGAAC 59.265 45.455 0.00 0.00 0.00 3.95
2208 2367 2.993899 CGCAGATTAACAACCTCGAACT 59.006 45.455 0.00 0.00 0.00 3.01
2209 2368 3.432252 CGCAGATTAACAACCTCGAACTT 59.568 43.478 0.00 0.00 0.00 2.66
2210 2369 4.666655 CGCAGATTAACAACCTCGAACTTG 60.667 45.833 1.11 1.11 0.00 3.16
2211 2370 4.451096 GCAGATTAACAACCTCGAACTTGA 59.549 41.667 8.38 0.00 0.00 3.02
2212 2371 5.614887 GCAGATTAACAACCTCGAACTTGAC 60.615 44.000 8.38 0.00 0.00 3.18
2213 2372 5.696724 CAGATTAACAACCTCGAACTTGACT 59.303 40.000 8.38 0.00 0.00 3.41
2214 2373 5.696724 AGATTAACAACCTCGAACTTGACTG 59.303 40.000 8.38 0.00 0.00 3.51
2215 2374 2.981859 ACAACCTCGAACTTGACTGT 57.018 45.000 8.38 0.00 0.00 3.55
2216 2375 3.261981 ACAACCTCGAACTTGACTGTT 57.738 42.857 8.38 0.00 0.00 3.16
2217 2376 2.936498 ACAACCTCGAACTTGACTGTTG 59.064 45.455 8.38 0.00 38.01 3.33
2218 2377 2.936498 CAACCTCGAACTTGACTGTTGT 59.064 45.455 0.00 0.00 0.00 3.32
2219 2378 3.261981 ACCTCGAACTTGACTGTTGTT 57.738 42.857 0.00 0.00 0.00 2.83
2220 2379 3.606687 ACCTCGAACTTGACTGTTGTTT 58.393 40.909 0.00 0.00 0.00 2.83
2221 2380 4.007659 ACCTCGAACTTGACTGTTGTTTT 58.992 39.130 0.00 0.00 0.00 2.43
2222 2381 4.142687 ACCTCGAACTTGACTGTTGTTTTG 60.143 41.667 0.00 0.00 0.00 2.44
2223 2382 4.342772 CTCGAACTTGACTGTTGTTTTGG 58.657 43.478 0.00 0.00 0.00 3.28
2224 2383 3.127895 TCGAACTTGACTGTTGTTTTGGG 59.872 43.478 0.00 0.00 0.00 4.12
2225 2384 3.127895 CGAACTTGACTGTTGTTTTGGGA 59.872 43.478 0.00 0.00 0.00 4.37
2226 2385 4.380023 CGAACTTGACTGTTGTTTTGGGAA 60.380 41.667 0.00 0.00 0.00 3.97
2227 2386 4.450082 ACTTGACTGTTGTTTTGGGAAC 57.550 40.909 0.00 0.00 0.00 3.62
2245 2404 5.757850 GGAACCAGATGTGATAAATGACC 57.242 43.478 0.00 0.00 0.00 4.02
2246 2405 5.440610 GGAACCAGATGTGATAAATGACCT 58.559 41.667 0.00 0.00 0.00 3.85
2247 2406 5.888161 GGAACCAGATGTGATAAATGACCTT 59.112 40.000 0.00 0.00 0.00 3.50
2248 2407 6.038714 GGAACCAGATGTGATAAATGACCTTC 59.961 42.308 0.00 0.00 0.00 3.46
2249 2408 6.065976 ACCAGATGTGATAAATGACCTTCA 57.934 37.500 0.00 0.00 0.00 3.02
2250 2409 6.484288 ACCAGATGTGATAAATGACCTTCAA 58.516 36.000 0.00 0.00 0.00 2.69
2251 2410 7.121382 ACCAGATGTGATAAATGACCTTCAAT 58.879 34.615 0.00 0.00 0.00 2.57
2252 2411 7.616935 ACCAGATGTGATAAATGACCTTCAATT 59.383 33.333 0.00 0.00 0.00 2.32
2253 2412 7.919091 CCAGATGTGATAAATGACCTTCAATTG 59.081 37.037 0.00 0.00 0.00 2.32
2254 2413 7.919091 CAGATGTGATAAATGACCTTCAATTGG 59.081 37.037 5.42 0.00 0.00 3.16
2255 2414 5.964758 TGTGATAAATGACCTTCAATTGGC 58.035 37.500 5.42 0.00 0.00 4.52
2256 2415 5.036737 GTGATAAATGACCTTCAATTGGCG 58.963 41.667 5.42 0.00 0.00 5.69
2257 2416 4.946772 TGATAAATGACCTTCAATTGGCGA 59.053 37.500 5.42 0.00 0.00 5.54
2258 2417 5.593909 TGATAAATGACCTTCAATTGGCGAT 59.406 36.000 5.42 0.00 0.00 4.58
2259 2418 4.806640 AAATGACCTTCAATTGGCGATT 57.193 36.364 5.42 0.00 0.00 3.34
2260 2419 3.788333 ATGACCTTCAATTGGCGATTG 57.212 42.857 19.49 19.49 45.31 2.67
2272 2431 8.854979 TCAATTGGCGATTGATAAAATAACTG 57.145 30.769 23.24 0.00 47.00 3.16
2273 2432 7.920151 TCAATTGGCGATTGATAAAATAACTGG 59.080 33.333 23.24 0.00 47.00 4.00
2274 2433 5.766150 TGGCGATTGATAAAATAACTGGG 57.234 39.130 0.00 0.00 0.00 4.45
2275 2434 4.582656 TGGCGATTGATAAAATAACTGGGG 59.417 41.667 0.00 0.00 0.00 4.96
2276 2435 4.583073 GGCGATTGATAAAATAACTGGGGT 59.417 41.667 0.00 0.00 0.00 4.95
2277 2436 5.068591 GGCGATTGATAAAATAACTGGGGTT 59.931 40.000 0.00 0.00 39.26 4.11
2278 2437 6.406512 GGCGATTGATAAAATAACTGGGGTTT 60.407 38.462 0.00 0.00 36.92 3.27
2279 2438 7.201839 GGCGATTGATAAAATAACTGGGGTTTA 60.202 37.037 0.00 0.00 36.92 2.01
2280 2439 8.192110 GCGATTGATAAAATAACTGGGGTTTAA 58.808 33.333 0.00 0.00 36.92 1.52
2315 2474 5.508200 TTGAATAACACGTTCAAAAGGCT 57.492 34.783 0.00 0.00 41.23 4.58
2316 2475 5.508200 TGAATAACACGTTCAAAAGGCTT 57.492 34.783 0.00 0.00 32.98 4.35
2317 2476 6.621316 TGAATAACACGTTCAAAAGGCTTA 57.379 33.333 0.00 0.00 32.98 3.09
2318 2477 7.028926 TGAATAACACGTTCAAAAGGCTTAA 57.971 32.000 0.00 0.00 32.98 1.85
2319 2478 7.481642 TGAATAACACGTTCAAAAGGCTTAAA 58.518 30.769 0.00 0.00 32.98 1.52
2320 2479 7.974501 TGAATAACACGTTCAAAAGGCTTAAAA 59.025 29.630 0.00 0.00 32.98 1.52
2321 2480 8.880878 AATAACACGTTCAAAAGGCTTAAAAT 57.119 26.923 0.00 0.00 0.00 1.82
2322 2481 8.880878 ATAACACGTTCAAAAGGCTTAAAATT 57.119 26.923 0.00 0.00 0.00 1.82
2323 2482 9.968870 ATAACACGTTCAAAAGGCTTAAAATTA 57.031 25.926 0.00 0.00 0.00 1.40
2324 2483 8.880878 AACACGTTCAAAAGGCTTAAAATTAT 57.119 26.923 0.00 0.00 0.00 1.28
2325 2484 8.293114 ACACGTTCAAAAGGCTTAAAATTATG 57.707 30.769 0.00 0.00 0.00 1.90
2326 2485 8.138712 ACACGTTCAAAAGGCTTAAAATTATGA 58.861 29.630 0.00 0.00 0.00 2.15
2327 2486 9.139174 CACGTTCAAAAGGCTTAAAATTATGAT 57.861 29.630 0.00 0.00 0.00 2.45
2328 2487 9.139174 ACGTTCAAAAGGCTTAAAATTATGATG 57.861 29.630 0.00 0.00 0.00 3.07
2329 2488 9.139174 CGTTCAAAAGGCTTAAAATTATGATGT 57.861 29.630 0.00 0.00 0.00 3.06
2380 2539 2.239654 CCAACCATTCCAGCCTCTAAGA 59.760 50.000 0.00 0.00 0.00 2.10
2390 2549 4.100189 TCCAGCCTCTAAGAAGCTATTGAC 59.900 45.833 0.00 0.00 34.38 3.18
2428 2587 1.180029 CTGGCTACCATTGCTTTGCT 58.820 50.000 0.00 0.00 30.82 3.91
2662 2882 6.597562 TCTTAGTTGTCCAGGTACACATTTT 58.402 36.000 0.00 0.00 0.00 1.82
2671 2891 6.657541 GTCCAGGTACACATTTTGGAAGATTA 59.342 38.462 0.00 0.00 39.47 1.75
2748 2974 7.885297 TCATTTCTTTGTAGGGATTTCTTGTG 58.115 34.615 0.00 0.00 0.00 3.33
2947 3178 4.473199 GTGCTTCGGTAGATTTCAAAACC 58.527 43.478 0.00 0.00 0.00 3.27
2952 3186 5.873179 TCGGTAGATTTCAAAACCATGAC 57.127 39.130 0.00 0.00 32.04 3.06
3005 3239 6.959639 ACTAAATTGACTTGGAACACACAT 57.040 33.333 0.00 0.00 39.29 3.21
3013 3247 6.179756 TGACTTGGAACACACATATATGCTT 58.820 36.000 12.79 0.00 39.29 3.91
3262 3517 5.698741 ATGTATGTGAACTGAGGGAATCA 57.301 39.130 0.00 0.00 36.21 2.57
3263 3518 5.497464 TGTATGTGAACTGAGGGAATCAA 57.503 39.130 0.00 0.00 37.52 2.57
3449 3704 1.425412 GCATGCTGCTTGAAACAAGG 58.575 50.000 18.44 0.00 40.96 3.61
3553 3808 3.367703 CCTCCAGGTGACAAATTTGCATC 60.368 47.826 18.12 15.88 0.00 3.91
3579 3834 4.488770 ACCCCATTTTGTTTGACAGGTAT 58.511 39.130 0.00 0.00 0.00 2.73
3633 3888 4.588951 AGATTGCCGTATCTATCAAGTGGA 59.411 41.667 0.00 0.00 33.17 4.02
3668 3923 3.057033 GGTTTGTCCTTACTCGCAGTCTA 60.057 47.826 0.00 0.00 0.00 2.59
3696 3951 9.545105 TGGTTTTCTTACGTTCACTTTCTATTA 57.455 29.630 0.00 0.00 0.00 0.98
3712 3967 9.995003 ACTTTCTATTATCTCTAGGCATGAAAG 57.005 33.333 0.00 0.00 41.04 2.62
3912 4176 9.136323 TCACGATATATCTATGCATATTGACCT 57.864 33.333 6.92 0.00 0.00 3.85
3921 4185 8.901472 TCTATGCATATTGACCTAACTATCCT 57.099 34.615 6.92 0.00 0.00 3.24
3933 4208 8.394822 TGACCTAACTATCCTGCTATCTTATCT 58.605 37.037 0.00 0.00 0.00 1.98
3942 4217 8.964533 ATCCTGCTATCTTATCTAAGGAAAGA 57.035 34.615 0.00 0.00 36.03 2.52
3974 4252 2.935042 TCGCTCTTCGAGACTTTCTTG 58.065 47.619 0.00 0.00 43.16 3.02
4016 4294 5.893687 TGCCTATGCATTTGTGTTTCATAG 58.106 37.500 3.54 0.00 44.23 2.23
4049 4409 3.989817 GTGTTTTCATTGAAGGATGTGCC 59.010 43.478 0.00 0.00 0.00 5.01
4174 4630 9.301897 AGATTAGTTAGACTTCCAAATTGCTTT 57.698 29.630 0.00 0.00 0.00 3.51
4178 4634 7.781056 AGTTAGACTTCCAAATTGCTTTTTCA 58.219 30.769 0.00 0.00 0.00 2.69
4205 4667 5.877012 TGGCAATCTTAACATCTCACTCTTC 59.123 40.000 0.00 0.00 0.00 2.87
4332 4802 9.942850 ATCCTCCAAACAATTAATTAAAACAGG 57.057 29.630 1.21 3.21 0.00 4.00
4424 4896 6.317642 TCAACACATGCACCCAATATTACTAC 59.682 38.462 0.00 0.00 0.00 2.73
4425 4897 6.001449 ACACATGCACCCAATATTACTACT 57.999 37.500 0.00 0.00 0.00 2.57
4427 4899 7.745717 ACACATGCACCCAATATTACTACTAT 58.254 34.615 0.00 0.00 0.00 2.12
4428 4900 7.878127 ACACATGCACCCAATATTACTACTATC 59.122 37.037 0.00 0.00 0.00 2.08
4429 4901 7.877612 CACATGCACCCAATATTACTACTATCA 59.122 37.037 0.00 0.00 0.00 2.15
4430 4902 8.436778 ACATGCACCCAATATTACTACTATCAA 58.563 33.333 0.00 0.00 0.00 2.57
4452 4924 8.050778 TCAAACAGGCAAATTACTTATCGAAT 57.949 30.769 0.00 0.00 0.00 3.34
4478 4950 1.610038 TGCTGTGCTGAAACCATCTTG 59.390 47.619 0.00 0.00 0.00 3.02
4646 5118 2.711542 CCGCAAGAGGACTGGTAATTT 58.288 47.619 0.00 0.00 43.02 1.82
4712 5184 2.910319 TCCACCTGCACCTTATTACAGT 59.090 45.455 0.00 0.00 0.00 3.55
4713 5185 4.098155 TCCACCTGCACCTTATTACAGTA 58.902 43.478 0.00 0.00 0.00 2.74
4714 5186 4.719773 TCCACCTGCACCTTATTACAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
4834 5316 5.334105 CCCAGTTTCTGAAAATCACAGTACG 60.334 44.000 4.09 0.00 36.81 3.67
4837 5319 5.815740 AGTTTCTGAAAATCACAGTACGTGT 59.184 36.000 4.09 5.27 46.44 4.49
4875 5357 8.731605 TGTGTTCTAACATTCAGTCTAGTCTAG 58.268 37.037 0.00 0.00 41.59 2.43
4876 5358 8.732531 GTGTTCTAACATTCAGTCTAGTCTAGT 58.267 37.037 6.77 0.00 41.59 2.57
4877 5359 8.948145 TGTTCTAACATTCAGTCTAGTCTAGTC 58.052 37.037 6.77 1.51 33.17 2.59
4878 5360 9.169592 GTTCTAACATTCAGTCTAGTCTAGTCT 57.830 37.037 6.77 3.91 0.00 3.24
4881 5363 9.826574 CTAACATTCAGTCTAGTCTAGTCTAGT 57.173 37.037 19.35 3.39 38.66 2.57
4882 5364 8.726870 AACATTCAGTCTAGTCTAGTCTAGTC 57.273 38.462 19.35 15.30 38.66 2.59
4883 5365 8.086143 ACATTCAGTCTAGTCTAGTCTAGTCT 57.914 38.462 19.35 16.89 38.66 3.24
4884 5366 9.204337 ACATTCAGTCTAGTCTAGTCTAGTCTA 57.796 37.037 19.35 11.76 38.66 2.59
4885 5367 9.692749 CATTCAGTCTAGTCTAGTCTAGTCTAG 57.307 40.741 24.27 24.27 42.26 2.43
4902 5384 4.928919 GTCTAGTCTAGACGCGTTATACG 58.071 47.826 21.40 0.53 44.90 3.06
4932 5495 1.936656 GCTTGTGCTGATCACTGACGA 60.937 52.381 0.00 0.00 45.81 4.20
4965 5528 1.152030 AGGCCAGAGAAGGTGGTGA 60.152 57.895 5.01 0.00 37.40 4.02
4998 5561 8.577296 TGAATTCCTTCCTGTATTAGTCTATCG 58.423 37.037 2.27 0.00 0.00 2.92
4999 5562 6.896021 TTCCTTCCTGTATTAGTCTATCGG 57.104 41.667 0.00 0.00 0.00 4.18
5000 5563 6.196918 TCCTTCCTGTATTAGTCTATCGGA 57.803 41.667 0.00 0.00 0.00 4.55
5001 5564 6.607970 TCCTTCCTGTATTAGTCTATCGGAA 58.392 40.000 0.00 0.00 0.00 4.30
5002 5565 6.489361 TCCTTCCTGTATTAGTCTATCGGAAC 59.511 42.308 0.00 0.00 0.00 3.62
5003 5566 6.490721 CCTTCCTGTATTAGTCTATCGGAACT 59.509 42.308 0.00 0.00 0.00 3.01
5004 5567 7.664731 CCTTCCTGTATTAGTCTATCGGAACTA 59.335 40.741 0.00 0.00 0.00 2.24
5005 5568 7.976135 TCCTGTATTAGTCTATCGGAACTAC 57.024 40.000 0.00 0.00 0.00 2.73
5006 5569 7.743749 TCCTGTATTAGTCTATCGGAACTACT 58.256 38.462 0.00 0.00 0.00 2.57
5007 5570 8.874156 TCCTGTATTAGTCTATCGGAACTACTA 58.126 37.037 0.00 0.00 0.00 1.82
5008 5571 9.669887 CCTGTATTAGTCTATCGGAACTACTAT 57.330 37.037 0.00 0.00 0.00 2.12
5010 5573 8.944029 TGTATTAGTCTATCGGAACTACTATGC 58.056 37.037 0.00 0.00 0.00 3.14
5011 5574 6.477669 TTAGTCTATCGGAACTACTATGCG 57.522 41.667 0.00 0.00 0.00 4.73
5012 5575 3.752222 AGTCTATCGGAACTACTATGCGG 59.248 47.826 0.00 0.00 32.09 5.69
5013 5576 3.750130 GTCTATCGGAACTACTATGCGGA 59.250 47.826 0.00 0.00 32.09 5.54
5014 5577 3.750130 TCTATCGGAACTACTATGCGGAC 59.250 47.826 0.00 0.00 32.09 4.79
5015 5578 0.659427 TCGGAACTACTATGCGGACG 59.341 55.000 0.00 0.00 32.09 4.79
5016 5579 0.659427 CGGAACTACTATGCGGACGA 59.341 55.000 0.00 0.00 0.00 4.20
5017 5580 1.596464 CGGAACTACTATGCGGACGAC 60.596 57.143 0.00 0.00 0.00 4.34
5018 5581 1.674962 GGAACTACTATGCGGACGACT 59.325 52.381 0.00 0.00 0.00 4.18
5019 5582 2.098770 GGAACTACTATGCGGACGACTT 59.901 50.000 0.00 0.00 0.00 3.01
5020 5583 2.846039 ACTACTATGCGGACGACTTG 57.154 50.000 0.00 0.00 0.00 3.16
5021 5584 1.404391 ACTACTATGCGGACGACTTGG 59.596 52.381 0.00 0.00 0.00 3.61
5022 5585 1.404391 CTACTATGCGGACGACTTGGT 59.596 52.381 0.00 0.00 0.00 3.67
5023 5586 0.108804 ACTATGCGGACGACTTGGTG 60.109 55.000 0.00 0.00 0.00 4.17
5024 5587 0.108804 CTATGCGGACGACTTGGTGT 60.109 55.000 0.00 0.00 0.00 4.16
5025 5588 0.389296 TATGCGGACGACTTGGTGTG 60.389 55.000 0.00 0.00 0.00 3.82
5026 5589 3.041940 GCGGACGACTTGGTGTGG 61.042 66.667 0.00 0.00 0.00 4.17
5027 5590 2.732016 CGGACGACTTGGTGTGGA 59.268 61.111 0.00 0.00 0.00 4.02
5028 5591 1.663702 CGGACGACTTGGTGTGGAC 60.664 63.158 0.00 0.00 0.00 4.02
5029 5592 1.663702 GGACGACTTGGTGTGGACG 60.664 63.158 0.00 0.00 0.00 4.79
5030 5593 1.361271 GACGACTTGGTGTGGACGA 59.639 57.895 0.00 0.00 0.00 4.20
5031 5594 0.249155 GACGACTTGGTGTGGACGAA 60.249 55.000 0.00 0.00 0.00 3.85
5032 5595 0.529119 ACGACTTGGTGTGGACGAAC 60.529 55.000 0.00 0.00 0.00 3.95
5033 5596 0.249322 CGACTTGGTGTGGACGAACT 60.249 55.000 0.00 0.00 0.00 3.01
5034 5597 1.001048 CGACTTGGTGTGGACGAACTA 60.001 52.381 0.00 0.00 0.00 2.24
5035 5598 2.352421 CGACTTGGTGTGGACGAACTAT 60.352 50.000 0.00 0.00 0.00 2.12
5036 5599 2.993899 GACTTGGTGTGGACGAACTATG 59.006 50.000 0.00 0.00 0.00 2.23
5037 5600 2.289444 ACTTGGTGTGGACGAACTATGG 60.289 50.000 0.00 0.00 0.00 2.74
5038 5601 1.634960 TGGTGTGGACGAACTATGGA 58.365 50.000 0.00 0.00 0.00 3.41
5039 5602 1.274167 TGGTGTGGACGAACTATGGAC 59.726 52.381 0.00 0.00 0.00 4.02
5040 5603 1.625616 GTGTGGACGAACTATGGACG 58.374 55.000 0.00 0.00 0.00 4.79
5041 5604 1.200716 GTGTGGACGAACTATGGACGA 59.799 52.381 0.00 0.00 0.00 4.20
5042 5605 2.097036 TGTGGACGAACTATGGACGAT 58.903 47.619 0.00 0.00 0.00 3.73
5043 5606 2.159296 TGTGGACGAACTATGGACGATG 60.159 50.000 0.00 0.00 0.00 3.84
5044 5607 1.407618 TGGACGAACTATGGACGATGG 59.592 52.381 0.00 0.00 0.00 3.51
5045 5608 1.679680 GGACGAACTATGGACGATGGA 59.320 52.381 0.00 0.00 0.00 3.41
5046 5609 2.287668 GGACGAACTATGGACGATGGAG 60.288 54.545 0.00 0.00 0.00 3.86
5047 5610 1.681793 ACGAACTATGGACGATGGAGG 59.318 52.381 0.00 0.00 0.00 4.30
5048 5611 1.954382 CGAACTATGGACGATGGAGGA 59.046 52.381 0.00 0.00 0.00 3.71
5049 5612 2.558795 CGAACTATGGACGATGGAGGAT 59.441 50.000 0.00 0.00 0.00 3.24
5050 5613 3.366476 CGAACTATGGACGATGGAGGATC 60.366 52.174 0.00 0.00 0.00 3.36
5060 5623 3.760580 GATGGAGGATCGAAAGGTCAT 57.239 47.619 0.00 0.00 45.13 3.06
5061 5624 4.873746 GATGGAGGATCGAAAGGTCATA 57.126 45.455 0.00 0.00 45.13 2.15
5062 5625 4.561105 GATGGAGGATCGAAAGGTCATAC 58.439 47.826 0.00 0.00 45.13 2.39
5063 5626 2.698797 TGGAGGATCGAAAGGTCATACC 59.301 50.000 0.00 0.00 45.13 2.73
5064 5627 2.037381 GGAGGATCGAAAGGTCATACCC 59.963 54.545 0.00 0.00 45.13 3.69
5065 5628 2.698797 GAGGATCGAAAGGTCATACCCA 59.301 50.000 0.00 0.00 45.13 4.51
5066 5629 2.700897 AGGATCGAAAGGTCATACCCAG 59.299 50.000 0.00 0.00 45.13 4.45
5067 5630 2.434702 GGATCGAAAGGTCATACCCAGT 59.565 50.000 0.00 0.00 45.13 4.00
5068 5631 3.118371 GGATCGAAAGGTCATACCCAGTT 60.118 47.826 0.00 0.00 45.13 3.16
5069 5632 3.328382 TCGAAAGGTCATACCCAGTTG 57.672 47.619 0.00 0.00 39.75 3.16
5070 5633 2.635915 TCGAAAGGTCATACCCAGTTGT 59.364 45.455 0.00 0.00 39.75 3.32
5071 5634 3.000727 CGAAAGGTCATACCCAGTTGTC 58.999 50.000 0.00 0.00 39.75 3.18
5072 5635 3.344515 GAAAGGTCATACCCAGTTGTCC 58.655 50.000 0.00 0.00 39.75 4.02
5073 5636 2.038863 AGGTCATACCCAGTTGTCCA 57.961 50.000 0.00 0.00 39.75 4.02
5074 5637 1.628846 AGGTCATACCCAGTTGTCCAC 59.371 52.381 0.00 0.00 39.75 4.02
5075 5638 1.628846 GGTCATACCCAGTTGTCCACT 59.371 52.381 0.00 0.00 35.35 4.00
5076 5639 2.835764 GGTCATACCCAGTTGTCCACTA 59.164 50.000 0.00 0.00 32.76 2.74
5077 5640 3.369157 GGTCATACCCAGTTGTCCACTAC 60.369 52.174 0.00 0.00 32.76 2.73
5078 5641 2.494471 TCATACCCAGTTGTCCACTACG 59.506 50.000 0.00 0.00 32.76 3.51
5079 5642 0.604578 TACCCAGTTGTCCACTACGC 59.395 55.000 0.00 0.00 32.76 4.42
5080 5643 1.369692 CCCAGTTGTCCACTACGCA 59.630 57.895 0.00 0.00 32.76 5.24
5081 5644 0.036388 CCCAGTTGTCCACTACGCAT 60.036 55.000 0.00 0.00 32.76 4.73
5082 5645 1.078709 CCAGTTGTCCACTACGCATG 58.921 55.000 0.00 0.00 32.76 4.06
5083 5646 1.078709 CAGTTGTCCACTACGCATGG 58.921 55.000 0.00 0.00 38.71 3.66
5084 5647 0.973632 AGTTGTCCACTACGCATGGA 59.026 50.000 0.00 0.00 44.20 3.41
5088 5651 1.146041 TCCACTACGCATGGATGGC 59.854 57.895 0.00 0.00 41.47 4.40
5089 5652 1.153188 CCACTACGCATGGATGGCA 60.153 57.895 0.00 0.00 39.87 4.92
5090 5653 0.535780 CCACTACGCATGGATGGCAT 60.536 55.000 0.00 0.00 39.87 4.40
5091 5654 0.589708 CACTACGCATGGATGGCATG 59.410 55.000 3.81 0.00 0.00 4.06
5092 5655 0.469494 ACTACGCATGGATGGCATGA 59.531 50.000 3.81 0.00 32.09 3.07
5093 5656 1.072806 ACTACGCATGGATGGCATGAT 59.927 47.619 3.81 0.00 32.09 2.45
5094 5657 1.736126 CTACGCATGGATGGCATGATC 59.264 52.381 3.81 0.00 32.09 2.92
5095 5658 0.109913 ACGCATGGATGGCATGATCT 59.890 50.000 3.81 0.00 32.09 2.75
5096 5659 0.521735 CGCATGGATGGCATGATCTG 59.478 55.000 3.81 0.00 32.09 2.90
5107 5670 0.041224 CATGATCTGCTGCATCGTGC 60.041 55.000 11.30 3.44 45.29 5.34
5117 5680 3.498840 GCATCGTGCAGAAATCGTC 57.501 52.632 5.30 0.00 44.26 4.20
5118 5681 0.026803 GCATCGTGCAGAAATCGTCC 59.973 55.000 5.30 0.00 44.26 4.79
5119 5682 1.358877 CATCGTGCAGAAATCGTCCA 58.641 50.000 0.00 0.00 0.00 4.02
5120 5683 1.325640 CATCGTGCAGAAATCGTCCAG 59.674 52.381 0.00 0.00 0.00 3.86
5121 5684 0.601057 TCGTGCAGAAATCGTCCAGA 59.399 50.000 0.00 0.00 0.00 3.86
5122 5685 1.204704 TCGTGCAGAAATCGTCCAGAT 59.795 47.619 0.00 0.00 42.43 2.90
5123 5686 1.590238 CGTGCAGAAATCGTCCAGATC 59.410 52.381 0.00 0.00 38.98 2.75
5124 5687 1.936547 GTGCAGAAATCGTCCAGATCC 59.063 52.381 0.00 0.00 38.98 3.36
5125 5688 1.833630 TGCAGAAATCGTCCAGATCCT 59.166 47.619 0.00 0.00 38.98 3.24
5126 5689 3.031013 TGCAGAAATCGTCCAGATCCTA 58.969 45.455 0.00 0.00 38.98 2.94
5127 5690 3.643320 TGCAGAAATCGTCCAGATCCTAT 59.357 43.478 0.00 0.00 38.98 2.57
5128 5691 4.241681 GCAGAAATCGTCCAGATCCTATC 58.758 47.826 0.00 0.00 38.98 2.08
5129 5692 4.480541 CAGAAATCGTCCAGATCCTATCG 58.519 47.826 0.00 0.00 38.98 2.92
5130 5693 4.022762 CAGAAATCGTCCAGATCCTATCGT 60.023 45.833 0.00 0.00 38.98 3.73
5131 5694 3.924918 AATCGTCCAGATCCTATCGTG 57.075 47.619 0.00 0.00 38.98 4.35
5132 5695 2.343484 TCGTCCAGATCCTATCGTGT 57.657 50.000 0.00 0.00 0.00 4.49
5133 5696 1.947456 TCGTCCAGATCCTATCGTGTG 59.053 52.381 0.00 0.00 0.00 3.82
5134 5697 1.676529 CGTCCAGATCCTATCGTGTGT 59.323 52.381 0.00 0.00 0.00 3.72
5135 5698 2.541794 CGTCCAGATCCTATCGTGTGTG 60.542 54.545 0.00 0.00 0.00 3.82
5136 5699 2.427453 GTCCAGATCCTATCGTGTGTGT 59.573 50.000 0.00 0.00 0.00 3.72
5137 5700 3.630769 GTCCAGATCCTATCGTGTGTGTA 59.369 47.826 0.00 0.00 0.00 2.90
5138 5701 3.883489 TCCAGATCCTATCGTGTGTGTAG 59.117 47.826 0.00 0.00 0.00 2.74
5139 5702 3.551046 CCAGATCCTATCGTGTGTGTAGC 60.551 52.174 0.00 0.00 0.00 3.58
5140 5703 3.066760 CAGATCCTATCGTGTGTGTAGCA 59.933 47.826 0.00 0.00 0.00 3.49
5141 5704 3.316588 AGATCCTATCGTGTGTGTAGCAG 59.683 47.826 0.00 0.00 0.00 4.24
5142 5705 1.134367 TCCTATCGTGTGTGTAGCAGC 59.866 52.381 0.00 0.00 0.00 5.25
5143 5706 1.191944 CTATCGTGTGTGTAGCAGCG 58.808 55.000 0.00 0.00 0.00 5.18
5144 5707 0.524414 TATCGTGTGTGTAGCAGCGT 59.476 50.000 0.00 0.00 0.00 5.07
5145 5708 0.319555 ATCGTGTGTGTAGCAGCGTT 60.320 50.000 0.00 0.00 0.00 4.84
5146 5709 1.201578 CGTGTGTGTAGCAGCGTTG 59.798 57.895 0.00 0.00 0.00 4.10
5147 5710 1.487452 CGTGTGTGTAGCAGCGTTGT 61.487 55.000 0.00 0.00 0.00 3.32
5148 5711 0.655733 GTGTGTGTAGCAGCGTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
5149 5712 1.862201 GTGTGTGTAGCAGCGTTGTTA 59.138 47.619 0.00 0.00 0.00 2.41
5150 5713 2.096909 GTGTGTGTAGCAGCGTTGTTAG 60.097 50.000 0.00 0.00 0.00 2.34
5151 5714 2.132762 GTGTGTAGCAGCGTTGTTAGT 58.867 47.619 0.00 0.00 0.00 2.24
5152 5715 2.155155 GTGTGTAGCAGCGTTGTTAGTC 59.845 50.000 0.00 0.00 0.00 2.59
5153 5716 2.035449 TGTGTAGCAGCGTTGTTAGTCT 59.965 45.455 0.00 0.00 0.00 3.24
5154 5717 3.253921 TGTGTAGCAGCGTTGTTAGTCTA 59.746 43.478 0.00 0.00 0.00 2.59
5155 5718 4.082408 TGTGTAGCAGCGTTGTTAGTCTAT 60.082 41.667 0.00 0.00 0.00 1.98
5156 5719 4.863131 GTGTAGCAGCGTTGTTAGTCTATT 59.137 41.667 0.00 0.00 0.00 1.73
5173 5740 6.987386 AGTCTATTATTGAAGGAGGTCATCG 58.013 40.000 0.00 0.00 0.00 3.84
5187 5754 4.251268 AGGTCATCGTACAAGGTTAAAGC 58.749 43.478 0.00 0.00 0.00 3.51
5214 5792 9.942850 TGTGGTTGATCAGTTGGTATATATATG 57.057 33.333 5.44 0.00 0.00 1.78
5238 5816 4.277515 ACTGTACAGTTCAGATGCACAT 57.722 40.909 22.95 0.00 38.83 3.21
5245 5823 4.453478 ACAGTTCAGATGCACATTGTGTAG 59.547 41.667 17.64 2.85 35.75 2.74
5249 5827 5.088680 TCAGATGCACATTGTGTAGATGA 57.911 39.130 17.64 16.60 35.75 2.92
5251 5829 5.583457 TCAGATGCACATTGTGTAGATGAAG 59.417 40.000 17.64 3.24 35.75 3.02
5253 5831 3.346315 TGCACATTGTGTAGATGAAGGG 58.654 45.455 17.64 0.00 35.75 3.95
5254 5832 2.098117 GCACATTGTGTAGATGAAGGGC 59.902 50.000 17.64 0.00 35.75 5.19
5277 5855 2.831685 TGAGGACAACTTGCGTGTAT 57.168 45.000 0.00 0.00 0.00 2.29
5297 5875 8.679385 CGTGTATATACAAGAGTTGATTACACG 58.321 37.037 20.26 20.08 37.80 4.49
5325 5903 5.165676 TGGTACATTTACTCGCACTGTAAG 58.834 41.667 0.00 0.00 42.29 2.34
5394 5980 2.615912 GCATGATCTTCAGTTACCCAGC 59.384 50.000 0.00 0.00 0.00 4.85
5426 6012 1.120795 TACTTGGTTCGACCCCGGTT 61.121 55.000 0.00 0.00 37.50 4.44
5494 6080 2.069776 CAGAAGGAAGGGCACTCCA 58.930 57.895 7.14 0.00 38.24 3.86
5656 6565 3.291101 GACCTTGGTCGTAGCGCCA 62.291 63.158 2.29 0.00 33.08 5.69
5760 6674 2.119495 GATCCCAACTCTTCTGCCCTA 58.881 52.381 0.00 0.00 0.00 3.53
5766 6685 1.859302 ACTCTTCTGCCCTACTCCAG 58.141 55.000 0.00 0.00 0.00 3.86
5768 6687 2.031120 CTCTTCTGCCCTACTCCAGAG 58.969 57.143 0.00 0.00 39.09 3.35
5784 6703 9.179909 CTACTCCAGAGAAAAACTACAGATCTA 57.820 37.037 0.70 0.00 0.00 1.98
5786 6705 7.451877 ACTCCAGAGAAAAACTACAGATCTACA 59.548 37.037 0.70 0.00 0.00 2.74
5787 6706 8.367660 TCCAGAGAAAAACTACAGATCTACAT 57.632 34.615 0.00 0.00 0.00 2.29
5788 6707 9.475620 TCCAGAGAAAAACTACAGATCTACATA 57.524 33.333 0.00 0.00 0.00 2.29
5829 6748 0.915364 GGAGATCCTGACCAAAGGCT 59.085 55.000 0.00 0.00 37.24 4.58
5840 6759 0.318107 CCAAAGGCTGAAGCAACACG 60.318 55.000 4.43 0.00 44.36 4.49
5841 6760 0.936297 CAAAGGCTGAAGCAACACGC 60.936 55.000 4.43 0.00 44.36 5.34
5918 6837 3.066190 CCGCCGTCTCCCTGTGTA 61.066 66.667 0.00 0.00 0.00 2.90
5976 6899 0.806868 TGAGCTCCCAACGTACGTAG 59.193 55.000 23.12 16.12 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.884458 TTTTGTTTCATGTGCGTGAGTA 57.116 36.364 0.00 0.00 0.00 2.59
90 92 9.295825 TGAAAAACCTGTGTATCAGAAACATAT 57.704 29.630 0.00 0.00 46.27 1.78
186 193 3.374042 TCCTGAAACAACTTCCACCAA 57.626 42.857 0.00 0.00 32.53 3.67
243 257 3.426568 GGTTCCTGTGCGAGCTGC 61.427 66.667 0.00 0.00 46.70 5.25
347 361 2.627699 TCACATCACGAGGCATATGCTA 59.372 45.455 26.12 6.74 41.70 3.49
353 367 1.156034 CGCATCACATCACGAGGCAT 61.156 55.000 0.00 0.00 40.08 4.40
384 398 1.335496 GTCCTGCAACGCAAAAACCTA 59.665 47.619 0.00 0.00 38.41 3.08
502 528 1.062880 GCAACGGTCGTTCTGTTTCAA 59.937 47.619 5.73 0.00 42.99 2.69
545 571 3.739782 GATGCAACCATCACGCGCC 62.740 63.158 5.73 0.00 45.75 6.53
571 597 2.618053 CGTTGGATTAGACACCTGACC 58.382 52.381 0.00 0.00 0.00 4.02
600 627 2.288579 TGTGTTAGAAACATCCGTCGCT 60.289 45.455 0.00 0.00 44.35 4.93
765 792 3.403057 CGTGTGCTGTCCGAACGG 61.403 66.667 6.94 6.94 34.66 4.44
1387 1451 1.344942 CTCTGCACGCGACAAGGTAC 61.345 60.000 15.93 0.00 0.00 3.34
1522 1630 0.581053 CAAAAACAATGGTGCCGCAC 59.419 50.000 15.50 15.50 0.00 5.34
1528 1636 1.270041 CCCCCGTCAAAAACAATGGTG 60.270 52.381 0.00 0.00 0.00 4.17
1530 1638 1.044611 ACCCCCGTCAAAAACAATGG 58.955 50.000 0.00 0.00 0.00 3.16
1630 1743 2.296471 TCGAGAGAGTTTCAGTTCCACC 59.704 50.000 0.00 0.00 34.84 4.61
1671 1784 7.544804 AGTGAGGATACATCATACTGCAATA 57.455 36.000 0.00 0.00 41.41 1.90
1674 1787 5.876651 AAGTGAGGATACATCATACTGCA 57.123 39.130 0.00 0.00 41.41 4.41
1675 1788 6.763135 TCAAAAGTGAGGATACATCATACTGC 59.237 38.462 0.00 0.00 41.41 4.40
1676 1789 8.899427 ATCAAAAGTGAGGATACATCATACTG 57.101 34.615 0.00 0.00 37.14 2.74
1725 1847 4.275689 CACCCATCGATTTTATAGCAGCAA 59.724 41.667 0.00 0.00 0.00 3.91
1745 1880 4.962122 CACAACGCAGCGCACACC 62.962 66.667 16.61 0.00 0.00 4.16
1751 1909 2.243957 TGAGGAACACAACGCAGCG 61.244 57.895 14.82 14.82 0.00 5.18
1760 1918 7.500992 TGATGATCCTTATAAGTGAGGAACAC 58.499 38.462 11.50 0.00 42.84 3.32
1792 1951 5.258326 CTGTGTTTGCAGAACATGGAACAC 61.258 45.833 16.21 16.21 39.19 3.32
1807 1966 4.022068 ACAATTACATGAGGGCTGTGTTTG 60.022 41.667 0.00 0.00 0.00 2.93
1815 1974 6.919721 TGAAAACTAACAATTACATGAGGGC 58.080 36.000 0.00 0.00 0.00 5.19
1847 2006 3.193267 GGAGAACCTACAATTGCATTGCA 59.807 43.478 7.38 7.38 43.98 4.08
2110 2269 9.981460 AGTTATCAAGATAGAAGAAACCCATTT 57.019 29.630 0.00 0.00 0.00 2.32
2136 2295 9.742144 TGGCTCTAAACTTTGTAACCAAATATA 57.258 29.630 0.00 0.00 39.72 0.86
2137 2296 8.644374 TGGCTCTAAACTTTGTAACCAAATAT 57.356 30.769 0.00 0.00 39.72 1.28
2138 2297 8.644374 ATGGCTCTAAACTTTGTAACCAAATA 57.356 30.769 0.00 0.00 39.72 1.40
2139 2298 6.969993 TGGCTCTAAACTTTGTAACCAAAT 57.030 33.333 0.00 0.00 39.72 2.32
2140 2299 6.969993 ATGGCTCTAAACTTTGTAACCAAA 57.030 33.333 0.00 0.00 38.22 3.28
2141 2300 7.228590 AGTATGGCTCTAAACTTTGTAACCAA 58.771 34.615 0.00 0.00 0.00 3.67
2142 2301 6.775708 AGTATGGCTCTAAACTTTGTAACCA 58.224 36.000 0.00 0.00 0.00 3.67
2143 2302 7.683437 AAGTATGGCTCTAAACTTTGTAACC 57.317 36.000 0.00 0.00 0.00 2.85
2147 2306 9.167311 CAGATAAAGTATGGCTCTAAACTTTGT 57.833 33.333 9.03 3.25 41.11 2.83
2148 2307 9.383519 TCAGATAAAGTATGGCTCTAAACTTTG 57.616 33.333 9.03 0.00 41.11 2.77
2149 2308 9.959721 TTCAGATAAAGTATGGCTCTAAACTTT 57.040 29.630 4.87 4.87 42.91 2.66
2151 2310 9.771534 GATTCAGATAAAGTATGGCTCTAAACT 57.228 33.333 0.00 0.00 0.00 2.66
2152 2311 8.704234 CGATTCAGATAAAGTATGGCTCTAAAC 58.296 37.037 0.00 0.00 0.00 2.01
2153 2312 8.421784 ACGATTCAGATAAAGTATGGCTCTAAA 58.578 33.333 0.00 0.00 0.00 1.85
2154 2313 7.867909 CACGATTCAGATAAAGTATGGCTCTAA 59.132 37.037 0.00 0.00 0.00 2.10
2155 2314 7.371159 CACGATTCAGATAAAGTATGGCTCTA 58.629 38.462 0.00 0.00 0.00 2.43
2156 2315 6.219473 CACGATTCAGATAAAGTATGGCTCT 58.781 40.000 0.00 0.00 0.00 4.09
2157 2316 5.107298 GCACGATTCAGATAAAGTATGGCTC 60.107 44.000 0.00 0.00 0.00 4.70
2158 2317 4.752101 GCACGATTCAGATAAAGTATGGCT 59.248 41.667 0.00 0.00 0.00 4.75
2159 2318 4.083802 GGCACGATTCAGATAAAGTATGGC 60.084 45.833 0.00 0.00 0.00 4.40
2160 2319 5.056480 TGGCACGATTCAGATAAAGTATGG 58.944 41.667 0.00 0.00 0.00 2.74
2161 2320 6.424812 TCATGGCACGATTCAGATAAAGTATG 59.575 38.462 0.00 0.00 0.00 2.39
2162 2321 6.425114 GTCATGGCACGATTCAGATAAAGTAT 59.575 38.462 0.00 0.00 0.00 2.12
2163 2322 5.753438 GTCATGGCACGATTCAGATAAAGTA 59.247 40.000 0.00 0.00 0.00 2.24
2164 2323 4.572389 GTCATGGCACGATTCAGATAAAGT 59.428 41.667 0.00 0.00 0.00 2.66
2165 2324 4.318333 CGTCATGGCACGATTCAGATAAAG 60.318 45.833 0.00 0.00 42.69 1.85
2166 2325 3.555547 CGTCATGGCACGATTCAGATAAA 59.444 43.478 0.00 0.00 42.69 1.40
2167 2326 3.123050 CGTCATGGCACGATTCAGATAA 58.877 45.455 0.00 0.00 42.69 1.75
2168 2327 2.742774 CGTCATGGCACGATTCAGATA 58.257 47.619 0.00 0.00 42.69 1.98
2169 2328 1.575244 CGTCATGGCACGATTCAGAT 58.425 50.000 0.00 0.00 42.69 2.90
2170 2329 1.083806 GCGTCATGGCACGATTCAGA 61.084 55.000 10.81 0.00 42.69 3.27
2171 2330 1.349627 GCGTCATGGCACGATTCAG 59.650 57.895 10.81 0.00 42.69 3.02
2172 2331 1.360931 CTGCGTCATGGCACGATTCA 61.361 55.000 10.81 0.00 42.69 2.57
2173 2332 1.083806 TCTGCGTCATGGCACGATTC 61.084 55.000 10.81 0.00 42.69 2.52
2174 2333 0.462581 ATCTGCGTCATGGCACGATT 60.463 50.000 10.81 0.00 42.69 3.34
2175 2334 0.462581 AATCTGCGTCATGGCACGAT 60.463 50.000 10.81 6.98 42.69 3.73
2176 2335 0.174617 TAATCTGCGTCATGGCACGA 59.825 50.000 10.81 5.21 42.69 4.35
2177 2336 1.006086 TTAATCTGCGTCATGGCACG 58.994 50.000 0.00 0.00 42.95 5.34
2178 2337 1.737236 TGTTAATCTGCGTCATGGCAC 59.263 47.619 0.00 0.00 38.17 5.01
2179 2338 2.106477 TGTTAATCTGCGTCATGGCA 57.894 45.000 0.00 0.00 41.45 4.92
2180 2339 2.477863 GGTTGTTAATCTGCGTCATGGC 60.478 50.000 0.00 0.00 0.00 4.40
2181 2340 3.009723 AGGTTGTTAATCTGCGTCATGG 58.990 45.455 0.00 0.00 0.00 3.66
2182 2341 3.242091 CGAGGTTGTTAATCTGCGTCATG 60.242 47.826 0.00 0.00 0.00 3.07
2183 2342 2.930040 CGAGGTTGTTAATCTGCGTCAT 59.070 45.455 0.00 0.00 0.00 3.06
2184 2343 2.029739 TCGAGGTTGTTAATCTGCGTCA 60.030 45.455 0.00 0.00 0.00 4.35
2185 2344 2.602878 TCGAGGTTGTTAATCTGCGTC 58.397 47.619 0.00 0.00 0.00 5.19
2186 2345 2.735134 GTTCGAGGTTGTTAATCTGCGT 59.265 45.455 0.00 0.00 0.00 5.24
2187 2346 2.993899 AGTTCGAGGTTGTTAATCTGCG 59.006 45.455 0.00 0.00 0.00 5.18
2188 2347 4.451096 TCAAGTTCGAGGTTGTTAATCTGC 59.549 41.667 8.26 0.00 0.00 4.26
2189 2348 5.696724 AGTCAAGTTCGAGGTTGTTAATCTG 59.303 40.000 8.26 0.00 0.00 2.90
2190 2349 5.696724 CAGTCAAGTTCGAGGTTGTTAATCT 59.303 40.000 8.26 0.00 0.00 2.40
2191 2350 5.465724 ACAGTCAAGTTCGAGGTTGTTAATC 59.534 40.000 8.26 0.00 0.00 1.75
2192 2351 5.365619 ACAGTCAAGTTCGAGGTTGTTAAT 58.634 37.500 8.26 0.00 0.00 1.40
2193 2352 4.761975 ACAGTCAAGTTCGAGGTTGTTAA 58.238 39.130 8.26 0.00 0.00 2.01
2194 2353 4.395959 ACAGTCAAGTTCGAGGTTGTTA 57.604 40.909 8.26 0.00 0.00 2.41
2195 2354 3.261981 ACAGTCAAGTTCGAGGTTGTT 57.738 42.857 8.26 0.00 0.00 2.83
2196 2355 2.936498 CAACAGTCAAGTTCGAGGTTGT 59.064 45.455 8.26 0.00 31.53 3.32
2197 2356 2.936498 ACAACAGTCAAGTTCGAGGTTG 59.064 45.455 0.00 0.00 37.38 3.77
2198 2357 3.261981 ACAACAGTCAAGTTCGAGGTT 57.738 42.857 0.00 0.00 0.00 3.50
2199 2358 2.981859 ACAACAGTCAAGTTCGAGGT 57.018 45.000 0.00 0.00 0.00 3.85
2200 2359 4.342772 CAAAACAACAGTCAAGTTCGAGG 58.657 43.478 0.00 0.00 0.00 4.63
2201 2360 4.342772 CCAAAACAACAGTCAAGTTCGAG 58.657 43.478 0.00 0.00 0.00 4.04
2202 2361 3.127895 CCCAAAACAACAGTCAAGTTCGA 59.872 43.478 0.00 0.00 0.00 3.71
2203 2362 3.127895 TCCCAAAACAACAGTCAAGTTCG 59.872 43.478 0.00 0.00 0.00 3.95
2204 2363 4.712122 TCCCAAAACAACAGTCAAGTTC 57.288 40.909 0.00 0.00 0.00 3.01
2205 2364 4.322424 GGTTCCCAAAACAACAGTCAAGTT 60.322 41.667 0.00 0.00 0.00 2.66
2206 2365 3.194755 GGTTCCCAAAACAACAGTCAAGT 59.805 43.478 0.00 0.00 0.00 3.16
2207 2366 3.194542 TGGTTCCCAAAACAACAGTCAAG 59.805 43.478 0.00 0.00 0.00 3.02
2208 2367 3.165875 TGGTTCCCAAAACAACAGTCAA 58.834 40.909 0.00 0.00 0.00 3.18
2209 2368 2.757868 CTGGTTCCCAAAACAACAGTCA 59.242 45.455 0.00 0.00 29.90 3.41
2210 2369 3.020984 TCTGGTTCCCAAAACAACAGTC 58.979 45.455 0.00 0.00 29.90 3.51
2211 2370 3.094484 TCTGGTTCCCAAAACAACAGT 57.906 42.857 0.00 0.00 29.90 3.55
2212 2371 3.384467 ACATCTGGTTCCCAAAACAACAG 59.616 43.478 0.00 0.00 29.90 3.16
2213 2372 3.131933 CACATCTGGTTCCCAAAACAACA 59.868 43.478 0.00 0.00 29.90 3.33
2214 2373 3.383185 TCACATCTGGTTCCCAAAACAAC 59.617 43.478 0.00 0.00 29.90 3.32
2215 2374 3.636679 TCACATCTGGTTCCCAAAACAA 58.363 40.909 0.00 0.00 29.90 2.83
2216 2375 3.304911 TCACATCTGGTTCCCAAAACA 57.695 42.857 0.00 0.00 30.80 2.83
2217 2376 5.975693 TTATCACATCTGGTTCCCAAAAC 57.024 39.130 0.00 0.00 30.80 2.43
2218 2377 6.723515 TCATTTATCACATCTGGTTCCCAAAA 59.276 34.615 0.00 0.00 30.80 2.44
2219 2378 6.152661 GTCATTTATCACATCTGGTTCCCAAA 59.847 38.462 0.00 0.00 30.80 3.28
2220 2379 5.652014 GTCATTTATCACATCTGGTTCCCAA 59.348 40.000 0.00 0.00 30.80 4.12
2221 2380 5.192927 GTCATTTATCACATCTGGTTCCCA 58.807 41.667 0.00 0.00 0.00 4.37
2222 2381 4.580580 GGTCATTTATCACATCTGGTTCCC 59.419 45.833 0.00 0.00 0.00 3.97
2223 2382 5.440610 AGGTCATTTATCACATCTGGTTCC 58.559 41.667 0.00 0.00 0.00 3.62
2224 2383 6.599244 TGAAGGTCATTTATCACATCTGGTTC 59.401 38.462 0.00 0.00 0.00 3.62
2225 2384 6.484288 TGAAGGTCATTTATCACATCTGGTT 58.516 36.000 0.00 0.00 0.00 3.67
2226 2385 6.065976 TGAAGGTCATTTATCACATCTGGT 57.934 37.500 0.00 0.00 0.00 4.00
2227 2386 7.578310 ATTGAAGGTCATTTATCACATCTGG 57.422 36.000 0.00 0.00 0.00 3.86
2228 2387 7.919091 CCAATTGAAGGTCATTTATCACATCTG 59.081 37.037 7.12 0.00 0.00 2.90
2229 2388 7.417116 GCCAATTGAAGGTCATTTATCACATCT 60.417 37.037 7.12 0.00 0.00 2.90
2230 2389 6.698766 GCCAATTGAAGGTCATTTATCACATC 59.301 38.462 7.12 0.00 0.00 3.06
2231 2390 6.576185 GCCAATTGAAGGTCATTTATCACAT 58.424 36.000 7.12 0.00 0.00 3.21
2232 2391 5.392919 CGCCAATTGAAGGTCATTTATCACA 60.393 40.000 7.12 0.00 0.00 3.58
2233 2392 5.036737 CGCCAATTGAAGGTCATTTATCAC 58.963 41.667 7.12 0.00 0.00 3.06
2234 2393 4.946772 TCGCCAATTGAAGGTCATTTATCA 59.053 37.500 7.12 0.00 0.00 2.15
2235 2394 5.499139 TCGCCAATTGAAGGTCATTTATC 57.501 39.130 7.12 0.00 0.00 1.75
2236 2395 6.275335 CAATCGCCAATTGAAGGTCATTTAT 58.725 36.000 7.12 0.00 46.54 1.40
2237 2396 5.649557 CAATCGCCAATTGAAGGTCATTTA 58.350 37.500 7.12 0.00 46.54 1.40
2238 2397 4.497300 CAATCGCCAATTGAAGGTCATTT 58.503 39.130 7.12 0.00 46.54 2.32
2239 2398 4.114058 CAATCGCCAATTGAAGGTCATT 57.886 40.909 7.12 0.00 46.54 2.57
2240 2399 3.788333 CAATCGCCAATTGAAGGTCAT 57.212 42.857 7.12 0.00 46.54 3.06
2248 2407 7.169645 CCCAGTTATTTTATCAATCGCCAATTG 59.830 37.037 0.00 0.00 45.22 2.32
2249 2408 7.209475 CCCAGTTATTTTATCAATCGCCAATT 58.791 34.615 0.00 0.00 0.00 2.32
2250 2409 6.239289 CCCCAGTTATTTTATCAATCGCCAAT 60.239 38.462 0.00 0.00 0.00 3.16
2251 2410 5.068460 CCCCAGTTATTTTATCAATCGCCAA 59.932 40.000 0.00 0.00 0.00 4.52
2252 2411 4.582656 CCCCAGTTATTTTATCAATCGCCA 59.417 41.667 0.00 0.00 0.00 5.69
2253 2412 4.583073 ACCCCAGTTATTTTATCAATCGCC 59.417 41.667 0.00 0.00 0.00 5.54
2254 2413 5.767816 ACCCCAGTTATTTTATCAATCGC 57.232 39.130 0.00 0.00 0.00 4.58
2293 2452 5.508200 AGCCTTTTGAACGTGTTATTCAA 57.492 34.783 0.00 0.00 42.78 2.69
2294 2453 5.508200 AAGCCTTTTGAACGTGTTATTCA 57.492 34.783 0.00 0.00 34.27 2.57
2295 2454 7.917720 TTTAAGCCTTTTGAACGTGTTATTC 57.082 32.000 0.00 0.00 0.00 1.75
2296 2455 8.880878 ATTTTAAGCCTTTTGAACGTGTTATT 57.119 26.923 0.00 0.00 0.00 1.40
2297 2456 8.880878 AATTTTAAGCCTTTTGAACGTGTTAT 57.119 26.923 0.00 0.00 0.00 1.89
2298 2457 9.968870 ATAATTTTAAGCCTTTTGAACGTGTTA 57.031 25.926 0.00 0.00 0.00 2.41
2299 2458 8.760569 CATAATTTTAAGCCTTTTGAACGTGTT 58.239 29.630 0.00 0.00 0.00 3.32
2300 2459 8.138712 TCATAATTTTAAGCCTTTTGAACGTGT 58.861 29.630 0.00 0.00 0.00 4.49
2301 2460 8.514136 TCATAATTTTAAGCCTTTTGAACGTG 57.486 30.769 0.00 0.00 0.00 4.49
2302 2461 9.139174 CATCATAATTTTAAGCCTTTTGAACGT 57.861 29.630 0.00 0.00 0.00 3.99
2303 2462 9.139174 ACATCATAATTTTAAGCCTTTTGAACG 57.861 29.630 0.00 0.00 0.00 3.95
2331 2490 9.650539 TGCAACAAAAGCATAAATGTGTATATT 57.349 25.926 0.00 0.00 37.02 1.28
2332 2491 9.650539 TTGCAACAAAAGCATAAATGTGTATAT 57.349 25.926 0.00 0.00 42.33 0.86
2333 2492 8.920665 GTTGCAACAAAAGCATAAATGTGTATA 58.079 29.630 24.52 0.00 42.33 1.47
2334 2493 7.095271 GGTTGCAACAAAAGCATAAATGTGTAT 60.095 33.333 29.55 0.00 42.33 2.29
2335 2494 6.201806 GGTTGCAACAAAAGCATAAATGTGTA 59.798 34.615 29.55 0.00 42.33 2.90
2336 2495 5.007528 GGTTGCAACAAAAGCATAAATGTGT 59.992 36.000 29.55 0.00 42.33 3.72
2337 2496 5.007430 TGGTTGCAACAAAAGCATAAATGTG 59.993 36.000 29.55 0.00 42.33 3.21
2338 2497 5.121811 TGGTTGCAACAAAAGCATAAATGT 58.878 33.333 29.55 0.00 42.33 2.71
2339 2498 5.670149 TGGTTGCAACAAAAGCATAAATG 57.330 34.783 29.55 0.00 42.33 2.32
2340 2499 5.008514 GGTTGGTTGCAACAAAAGCATAAAT 59.991 36.000 29.55 0.00 42.33 1.40
2341 2500 4.333926 GGTTGGTTGCAACAAAAGCATAAA 59.666 37.500 29.55 0.00 42.33 1.40
2342 2501 3.873952 GGTTGGTTGCAACAAAAGCATAA 59.126 39.130 29.55 9.18 42.33 1.90
2343 2502 3.118629 TGGTTGGTTGCAACAAAAGCATA 60.119 39.130 29.82 17.50 42.33 3.14
2344 2503 2.287769 GGTTGGTTGCAACAAAAGCAT 58.712 42.857 29.55 0.00 42.33 3.79
2345 2504 1.002430 TGGTTGGTTGCAACAAAAGCA 59.998 42.857 29.82 29.82 40.85 3.91
2346 2505 1.731720 TGGTTGGTTGCAACAAAAGC 58.268 45.000 29.55 27.88 36.83 3.51
2347 2506 3.312146 GGAATGGTTGGTTGCAACAAAAG 59.688 43.478 29.55 0.00 36.83 2.27
2348 2507 3.274288 GGAATGGTTGGTTGCAACAAAA 58.726 40.909 29.55 20.08 36.83 2.44
2349 2508 2.237143 TGGAATGGTTGGTTGCAACAAA 59.763 40.909 29.55 23.02 36.83 2.83
2350 2509 1.833630 TGGAATGGTTGGTTGCAACAA 59.166 42.857 29.55 17.93 36.83 2.83
2351 2510 1.411977 CTGGAATGGTTGGTTGCAACA 59.588 47.619 29.55 13.95 36.83 3.33
2380 2539 5.366768 TGCCATCTAGTAAGGTCAATAGCTT 59.633 40.000 0.00 0.00 45.22 3.74
2390 2549 3.556633 CCAGCATCTGCCATCTAGTAAGG 60.557 52.174 0.00 0.00 43.38 2.69
2662 2882 5.418840 GGCAAGGATTTTCTGTAATCTTCCA 59.581 40.000 0.00 0.00 35.37 3.53
2671 2891 3.173953 TCCATGGCAAGGATTTTCTGT 57.826 42.857 7.49 0.00 0.00 3.41
2748 2974 3.545703 CCATGTCAGACCATAAGAACCC 58.454 50.000 0.00 0.00 0.00 4.11
2947 3178 6.364165 CAGCTGTTTAAATGTTTGGAGTCATG 59.636 38.462 5.25 0.00 0.00 3.07
2952 3186 7.116805 GGATTTCAGCTGTTTAAATGTTTGGAG 59.883 37.037 14.67 0.00 0.00 3.86
3005 3239 8.812513 AAGATATGGCAGCAATAAAGCATATA 57.187 30.769 0.00 0.00 36.85 0.86
3234 3489 7.108841 TCCCTCAGTTCACATACATAAGTAC 57.891 40.000 0.00 0.00 31.96 2.73
3262 3517 6.482973 CACAAGTGGAAACCTGCATTAAAATT 59.517 34.615 0.00 0.00 0.00 1.82
3263 3518 5.990996 CACAAGTGGAAACCTGCATTAAAAT 59.009 36.000 0.00 0.00 0.00 1.82
3469 3724 5.088680 ACACAAAATAGCATCATTTGGGG 57.911 39.130 10.08 3.48 40.80 4.96
3470 3725 6.164876 TGAACACAAAATAGCATCATTTGGG 58.835 36.000 5.37 5.37 41.91 4.12
3542 3797 3.681593 TGGGGTTCAGATGCAAATTTG 57.318 42.857 14.03 14.03 0.00 2.32
3553 3808 4.370917 CTGTCAAACAAAATGGGGTTCAG 58.629 43.478 0.00 0.00 0.00 3.02
3579 3834 1.270518 GCCTTCTCTGACTTCAGCACA 60.271 52.381 0.99 0.00 43.46 4.57
3633 3888 1.963515 GACAAACCAAATCCAGGTGCT 59.036 47.619 0.00 0.00 39.86 4.40
3668 3923 5.878669 AGAAAGTGAACGTAAGAAAACCAGT 59.121 36.000 0.00 0.00 43.62 4.00
3696 3951 9.479549 TTTAAATTTCCTTTCATGCCTAGAGAT 57.520 29.630 0.00 0.00 0.00 2.75
3762 4018 2.233431 TGGCATCCCATGTAAAACTTGC 59.767 45.455 0.00 0.00 35.79 4.01
3914 4178 9.830186 TTTCCTTAGATAAGATAGCAGGATAGT 57.170 33.333 1.08 0.00 35.33 2.12
3917 4181 8.964533 TCTTTCCTTAGATAAGATAGCAGGAT 57.035 34.615 1.08 0.00 35.33 3.24
3918 4182 8.964533 ATCTTTCCTTAGATAAGATAGCAGGA 57.035 34.615 1.08 0.00 36.98 3.86
3933 4208 8.008513 AGCGAAAGTATGACTATCTTTCCTTA 57.991 34.615 10.04 0.00 41.97 2.69
3969 4247 5.888982 AGAGGAAAGTACTTGGACAAGAA 57.111 39.130 18.15 0.00 40.79 2.52
3974 4252 3.502595 GGCAAAGAGGAAAGTACTTGGAC 59.497 47.826 9.34 2.68 0.00 4.02
4006 4284 8.915871 AACACATATGCAATTCTATGAAACAC 57.084 30.769 11.15 0.00 0.00 3.32
4016 4294 8.385111 CCTTCAATGAAAACACATATGCAATTC 58.615 33.333 1.58 3.71 0.00 2.17
4149 4605 9.914131 AAAAGCAATTTGGAAGTCTAACTAATC 57.086 29.630 0.00 0.00 0.00 1.75
4153 4609 7.781056 TGAAAAAGCAATTTGGAAGTCTAACT 58.219 30.769 0.00 0.00 0.00 2.24
4170 4626 5.752955 TGTTAAGATTGCCAACTGAAAAAGC 59.247 36.000 0.00 0.00 0.00 3.51
4174 4630 6.489700 TGAGATGTTAAGATTGCCAACTGAAA 59.510 34.615 0.00 0.00 0.00 2.69
4178 4634 5.564550 AGTGAGATGTTAAGATTGCCAACT 58.435 37.500 0.00 0.00 0.00 3.16
4293 4763 5.187186 TGTTTGGAGGATAAGTCTACCTGTC 59.813 44.000 0.00 0.00 33.89 3.51
4332 4802 1.227999 TGCGTAAAGACACAGCCTGC 61.228 55.000 0.00 0.00 0.00 4.85
4424 4896 8.826710 TCGATAAGTAATTTGCCTGTTTGATAG 58.173 33.333 0.00 0.00 0.00 2.08
4425 4897 8.725405 TCGATAAGTAATTTGCCTGTTTGATA 57.275 30.769 0.00 0.00 0.00 2.15
4427 4899 7.441890 TTCGATAAGTAATTTGCCTGTTTGA 57.558 32.000 0.00 0.00 0.00 2.69
4428 4900 7.754924 ACATTCGATAAGTAATTTGCCTGTTTG 59.245 33.333 0.00 0.00 0.00 2.93
4429 4901 7.826690 ACATTCGATAAGTAATTTGCCTGTTT 58.173 30.769 0.00 0.00 0.00 2.83
4430 4902 7.391148 ACATTCGATAAGTAATTTGCCTGTT 57.609 32.000 0.00 0.00 0.00 3.16
4452 4924 2.028658 TGGTTTCAGCACAGCAAAAACA 60.029 40.909 15.89 10.66 37.13 2.83
4478 4950 1.079612 GCTGCAGGAAATTGCCCAC 60.080 57.895 17.12 0.00 43.43 4.61
4601 5073 1.613630 ACCAGCTCCTTCGATGGGT 60.614 57.895 16.68 4.19 44.53 4.51
4714 5186 8.225107 CGTTCCGAAAAAGAAGTACATGAATAA 58.775 33.333 0.00 0.00 0.00 1.40
4764 5239 2.485122 CGCGGGTGCATCCTTTTC 59.515 61.111 15.59 0.00 42.97 2.29
4834 5316 8.160947 TGTTAGAACACAGTGTATGGTACACAC 61.161 40.741 19.05 6.81 46.24 3.82
4837 5319 6.408107 TGTTAGAACACAGTGTATGGTACA 57.592 37.500 6.63 5.65 36.91 2.90
4876 5358 8.042545 CGTATAACGCGTCTAGACTAGACTAGA 61.043 44.444 30.65 22.77 42.42 2.43
4877 5359 6.032355 CGTATAACGCGTCTAGACTAGACTAG 59.968 46.154 30.65 26.07 42.42 2.57
4878 5360 5.853810 CGTATAACGCGTCTAGACTAGACTA 59.146 44.000 30.65 20.44 42.42 2.59
4879 5361 4.679197 CGTATAACGCGTCTAGACTAGACT 59.321 45.833 30.65 19.25 42.42 3.24
4880 5362 4.677378 TCGTATAACGCGTCTAGACTAGAC 59.323 45.833 26.48 26.48 44.65 2.59
4881 5363 4.860072 TCGTATAACGCGTCTAGACTAGA 58.140 43.478 20.34 8.17 42.21 2.43
4882 5364 4.914504 TCTCGTATAACGCGTCTAGACTAG 59.085 45.833 20.34 14.90 42.21 2.57
4883 5365 4.860072 TCTCGTATAACGCGTCTAGACTA 58.140 43.478 20.34 0.00 42.21 2.59
4884 5366 3.711086 TCTCGTATAACGCGTCTAGACT 58.289 45.455 20.34 0.00 42.21 3.24
4885 5367 4.644044 ATCTCGTATAACGCGTCTAGAC 57.356 45.455 14.44 13.18 42.21 2.59
4902 5384 4.573607 TGATCAGCACAAGCATACAATCTC 59.426 41.667 0.00 0.00 45.49 2.75
4932 5495 0.967380 GGCCTGCATAGCACAAACCT 60.967 55.000 10.66 0.00 33.79 3.50
4965 5528 1.208165 AGGAAGGAATTCAGGGCCGT 61.208 55.000 7.93 0.00 0.00 5.68
4998 5561 1.674962 AGTCGTCCGCATAGTAGTTCC 59.325 52.381 0.00 0.00 0.00 3.62
4999 5562 3.106672 CAAGTCGTCCGCATAGTAGTTC 58.893 50.000 0.00 0.00 0.00 3.01
5000 5563 2.159282 CCAAGTCGTCCGCATAGTAGTT 60.159 50.000 0.00 0.00 0.00 2.24
5001 5564 1.404391 CCAAGTCGTCCGCATAGTAGT 59.596 52.381 0.00 0.00 0.00 2.73
5002 5565 1.404391 ACCAAGTCGTCCGCATAGTAG 59.596 52.381 0.00 0.00 0.00 2.57
5003 5566 1.133598 CACCAAGTCGTCCGCATAGTA 59.866 52.381 0.00 0.00 0.00 1.82
5004 5567 0.108804 CACCAAGTCGTCCGCATAGT 60.109 55.000 0.00 0.00 0.00 2.12
5005 5568 0.108804 ACACCAAGTCGTCCGCATAG 60.109 55.000 0.00 0.00 0.00 2.23
5006 5569 0.389296 CACACCAAGTCGTCCGCATA 60.389 55.000 0.00 0.00 0.00 3.14
5007 5570 1.667830 CACACCAAGTCGTCCGCAT 60.668 57.895 0.00 0.00 0.00 4.73
5008 5571 2.279851 CACACCAAGTCGTCCGCA 60.280 61.111 0.00 0.00 0.00 5.69
5009 5572 3.041940 CCACACCAAGTCGTCCGC 61.042 66.667 0.00 0.00 0.00 5.54
5010 5573 1.663702 GTCCACACCAAGTCGTCCG 60.664 63.158 0.00 0.00 0.00 4.79
5011 5574 1.663702 CGTCCACACCAAGTCGTCC 60.664 63.158 0.00 0.00 0.00 4.79
5012 5575 0.249155 TTCGTCCACACCAAGTCGTC 60.249 55.000 0.00 0.00 0.00 4.20
5013 5576 0.529119 GTTCGTCCACACCAAGTCGT 60.529 55.000 0.00 0.00 0.00 4.34
5014 5577 0.249322 AGTTCGTCCACACCAAGTCG 60.249 55.000 0.00 0.00 0.00 4.18
5015 5578 2.806608 TAGTTCGTCCACACCAAGTC 57.193 50.000 0.00 0.00 0.00 3.01
5016 5579 2.289444 CCATAGTTCGTCCACACCAAGT 60.289 50.000 0.00 0.00 0.00 3.16
5017 5580 2.028476 TCCATAGTTCGTCCACACCAAG 60.028 50.000 0.00 0.00 0.00 3.61
5018 5581 1.972075 TCCATAGTTCGTCCACACCAA 59.028 47.619 0.00 0.00 0.00 3.67
5019 5582 1.274167 GTCCATAGTTCGTCCACACCA 59.726 52.381 0.00 0.00 0.00 4.17
5020 5583 1.734707 CGTCCATAGTTCGTCCACACC 60.735 57.143 0.00 0.00 0.00 4.16
5021 5584 1.200716 TCGTCCATAGTTCGTCCACAC 59.799 52.381 0.00 0.00 0.00 3.82
5022 5585 1.536940 TCGTCCATAGTTCGTCCACA 58.463 50.000 0.00 0.00 0.00 4.17
5023 5586 2.460918 CATCGTCCATAGTTCGTCCAC 58.539 52.381 0.00 0.00 0.00 4.02
5024 5587 1.407618 CCATCGTCCATAGTTCGTCCA 59.592 52.381 0.00 0.00 0.00 4.02
5025 5588 1.679680 TCCATCGTCCATAGTTCGTCC 59.320 52.381 0.00 0.00 0.00 4.79
5026 5589 2.287668 CCTCCATCGTCCATAGTTCGTC 60.288 54.545 0.00 0.00 0.00 4.20
5027 5590 1.681793 CCTCCATCGTCCATAGTTCGT 59.318 52.381 0.00 0.00 0.00 3.85
5028 5591 1.954382 TCCTCCATCGTCCATAGTTCG 59.046 52.381 0.00 0.00 0.00 3.95
5029 5592 4.181309 GATCCTCCATCGTCCATAGTTC 57.819 50.000 0.00 0.00 0.00 3.01
5039 5602 7.789177 GGTATGACCTTTCGATCCTCCATCG 62.789 52.000 0.00 0.00 44.65 3.84
5040 5603 3.760580 ATGACCTTTCGATCCTCCATC 57.239 47.619 0.00 0.00 0.00 3.51
5041 5604 3.325135 GGTATGACCTTTCGATCCTCCAT 59.675 47.826 0.00 0.00 34.73 3.41
5042 5605 2.698797 GGTATGACCTTTCGATCCTCCA 59.301 50.000 0.00 0.00 34.73 3.86
5043 5606 2.037381 GGGTATGACCTTTCGATCCTCC 59.963 54.545 0.00 0.00 38.64 4.30
5044 5607 2.698797 TGGGTATGACCTTTCGATCCTC 59.301 50.000 0.00 0.00 38.64 3.71
5045 5608 2.700897 CTGGGTATGACCTTTCGATCCT 59.299 50.000 0.00 0.00 38.64 3.24
5046 5609 2.434702 ACTGGGTATGACCTTTCGATCC 59.565 50.000 0.00 0.00 38.64 3.36
5047 5610 3.821421 ACTGGGTATGACCTTTCGATC 57.179 47.619 0.00 0.00 38.64 3.69
5048 5611 3.263425 ACAACTGGGTATGACCTTTCGAT 59.737 43.478 0.00 0.00 38.64 3.59
5049 5612 2.635915 ACAACTGGGTATGACCTTTCGA 59.364 45.455 0.00 0.00 38.64 3.71
5050 5613 3.000727 GACAACTGGGTATGACCTTTCG 58.999 50.000 0.00 0.00 38.64 3.46
5051 5614 3.244770 TGGACAACTGGGTATGACCTTTC 60.245 47.826 0.00 0.00 38.64 2.62
5052 5615 2.714250 TGGACAACTGGGTATGACCTTT 59.286 45.455 0.00 0.00 38.64 3.11
5053 5616 2.039879 GTGGACAACTGGGTATGACCTT 59.960 50.000 0.00 0.00 38.64 3.50
5054 5617 1.628846 GTGGACAACTGGGTATGACCT 59.371 52.381 0.00 0.00 38.64 3.85
5055 5618 1.628846 AGTGGACAACTGGGTATGACC 59.371 52.381 0.00 0.00 37.88 4.02
5056 5619 3.675228 CGTAGTGGACAACTGGGTATGAC 60.675 52.174 0.00 0.00 40.26 3.06
5057 5620 2.494471 CGTAGTGGACAACTGGGTATGA 59.506 50.000 0.00 0.00 40.26 2.15
5058 5621 2.888594 CGTAGTGGACAACTGGGTATG 58.111 52.381 0.00 0.00 40.26 2.39
5059 5622 1.206371 GCGTAGTGGACAACTGGGTAT 59.794 52.381 0.00 0.00 40.26 2.73
5060 5623 0.604578 GCGTAGTGGACAACTGGGTA 59.395 55.000 0.00 0.00 40.26 3.69
5061 5624 1.370064 GCGTAGTGGACAACTGGGT 59.630 57.895 0.00 0.00 40.26 4.51
5062 5625 0.036388 ATGCGTAGTGGACAACTGGG 60.036 55.000 0.00 0.00 40.26 4.45
5063 5626 1.078709 CATGCGTAGTGGACAACTGG 58.921 55.000 0.00 0.00 40.26 4.00
5064 5627 1.078709 CCATGCGTAGTGGACAACTG 58.921 55.000 0.00 0.00 40.26 3.16
5065 5628 0.973632 TCCATGCGTAGTGGACAACT 59.026 50.000 2.11 0.00 40.72 3.16
5066 5629 3.525619 TCCATGCGTAGTGGACAAC 57.474 52.632 2.11 0.00 40.72 3.32
5071 5634 0.535780 ATGCCATCCATGCGTAGTGG 60.536 55.000 0.00 0.31 38.11 4.00
5072 5635 0.589708 CATGCCATCCATGCGTAGTG 59.410 55.000 0.00 0.00 44.34 2.74
5073 5636 3.011085 CATGCCATCCATGCGTAGT 57.989 52.632 0.00 0.00 44.34 2.73
5087 5650 3.890768 GCACGATGCAGCAGATCATGC 62.891 57.143 1.53 0.65 45.58 4.06
5088 5651 0.041224 GCACGATGCAGCAGATCATG 60.041 55.000 1.53 0.00 44.26 3.07
5089 5652 2.318224 GCACGATGCAGCAGATCAT 58.682 52.632 1.53 0.00 44.26 2.45
5090 5653 3.803886 GCACGATGCAGCAGATCA 58.196 55.556 1.53 0.00 44.26 2.92
5099 5662 0.026803 GGACGATTTCTGCACGATGC 59.973 55.000 0.24 0.00 45.29 3.91
5100 5663 1.325640 CTGGACGATTTCTGCACGATG 59.674 52.381 0.24 0.00 0.00 3.84
5101 5664 1.204704 TCTGGACGATTTCTGCACGAT 59.795 47.619 0.24 0.00 0.00 3.73
5102 5665 0.601057 TCTGGACGATTTCTGCACGA 59.399 50.000 0.24 0.00 0.00 4.35
5103 5666 1.590238 GATCTGGACGATTTCTGCACG 59.410 52.381 0.00 0.00 30.84 5.34
5104 5667 1.936547 GGATCTGGACGATTTCTGCAC 59.063 52.381 0.00 0.00 30.84 4.57
5105 5668 1.833630 AGGATCTGGACGATTTCTGCA 59.166 47.619 0.00 0.00 30.84 4.41
5106 5669 2.611225 AGGATCTGGACGATTTCTGC 57.389 50.000 0.00 0.00 30.84 4.26
5107 5670 4.022762 ACGATAGGATCTGGACGATTTCTG 60.023 45.833 0.00 0.00 43.77 3.02
5108 5671 4.022762 CACGATAGGATCTGGACGATTTCT 60.023 45.833 0.00 0.00 43.77 2.52
5109 5672 4.230657 CACGATAGGATCTGGACGATTTC 58.769 47.826 0.00 0.00 43.77 2.17
5110 5673 3.637229 ACACGATAGGATCTGGACGATTT 59.363 43.478 0.00 0.00 43.77 2.17
5111 5674 3.004839 CACACGATAGGATCTGGACGATT 59.995 47.826 0.00 0.00 43.77 3.34
5112 5675 2.554462 CACACGATAGGATCTGGACGAT 59.446 50.000 0.00 0.00 43.77 3.73
5113 5676 1.947456 CACACGATAGGATCTGGACGA 59.053 52.381 0.00 0.00 43.77 4.20
5114 5677 1.676529 ACACACGATAGGATCTGGACG 59.323 52.381 0.00 0.00 43.77 4.79
5115 5678 2.427453 ACACACACGATAGGATCTGGAC 59.573 50.000 0.00 0.00 43.77 4.02
5116 5679 2.735151 ACACACACGATAGGATCTGGA 58.265 47.619 0.00 0.00 43.77 3.86
5117 5680 3.551046 GCTACACACACGATAGGATCTGG 60.551 52.174 0.00 0.00 43.77 3.86
5118 5681 3.066760 TGCTACACACACGATAGGATCTG 59.933 47.826 0.00 0.00 43.77 2.90
5119 5682 3.288092 TGCTACACACACGATAGGATCT 58.712 45.455 0.00 0.00 43.77 2.75
5120 5683 3.633235 CTGCTACACACACGATAGGATC 58.367 50.000 0.00 0.00 43.77 3.36
5121 5684 2.223829 GCTGCTACACACACGATAGGAT 60.224 50.000 0.00 0.00 43.77 3.24
5122 5685 1.134367 GCTGCTACACACACGATAGGA 59.866 52.381 0.00 0.00 43.77 2.94
5123 5686 1.560923 GCTGCTACACACACGATAGG 58.439 55.000 0.00 0.00 43.77 2.57
5124 5687 1.191944 CGCTGCTACACACACGATAG 58.808 55.000 0.00 0.00 46.19 2.08
5125 5688 0.524414 ACGCTGCTACACACACGATA 59.476 50.000 0.00 0.00 0.00 2.92
5126 5689 0.319555 AACGCTGCTACACACACGAT 60.320 50.000 0.00 0.00 0.00 3.73
5127 5690 1.066752 AACGCTGCTACACACACGA 59.933 52.632 0.00 0.00 0.00 4.35
5128 5691 1.201578 CAACGCTGCTACACACACG 59.798 57.895 0.00 0.00 0.00 4.49
5129 5692 0.655733 AACAACGCTGCTACACACAC 59.344 50.000 0.00 0.00 0.00 3.82
5130 5693 2.131972 CTAACAACGCTGCTACACACA 58.868 47.619 0.00 0.00 0.00 3.72
5131 5694 2.132762 ACTAACAACGCTGCTACACAC 58.867 47.619 0.00 0.00 0.00 3.82
5132 5695 2.035449 AGACTAACAACGCTGCTACACA 59.965 45.455 0.00 0.00 0.00 3.72
5133 5696 2.673833 AGACTAACAACGCTGCTACAC 58.326 47.619 0.00 0.00 0.00 2.90
5134 5697 4.713824 ATAGACTAACAACGCTGCTACA 57.286 40.909 0.00 0.00 0.00 2.74
5135 5698 7.434307 TCAATAATAGACTAACAACGCTGCTAC 59.566 37.037 0.00 0.00 0.00 3.58
5136 5699 7.485810 TCAATAATAGACTAACAACGCTGCTA 58.514 34.615 0.00 0.00 0.00 3.49
5137 5700 6.338146 TCAATAATAGACTAACAACGCTGCT 58.662 36.000 0.00 0.00 0.00 4.24
5138 5701 6.583912 TCAATAATAGACTAACAACGCTGC 57.416 37.500 0.00 0.00 0.00 5.25
5139 5702 7.491372 TCCTTCAATAATAGACTAACAACGCTG 59.509 37.037 0.00 0.00 0.00 5.18
5140 5703 7.553334 TCCTTCAATAATAGACTAACAACGCT 58.447 34.615 0.00 0.00 0.00 5.07
5141 5704 7.042658 CCTCCTTCAATAATAGACTAACAACGC 60.043 40.741 0.00 0.00 0.00 4.84
5142 5705 7.980099 ACCTCCTTCAATAATAGACTAACAACG 59.020 37.037 0.00 0.00 0.00 4.10
5143 5706 9.315525 GACCTCCTTCAATAATAGACTAACAAC 57.684 37.037 0.00 0.00 0.00 3.32
5144 5707 9.042450 TGACCTCCTTCAATAATAGACTAACAA 57.958 33.333 0.00 0.00 0.00 2.83
5145 5708 8.603898 TGACCTCCTTCAATAATAGACTAACA 57.396 34.615 0.00 0.00 0.00 2.41
5146 5709 9.699703 GATGACCTCCTTCAATAATAGACTAAC 57.300 37.037 0.00 0.00 0.00 2.34
5147 5710 8.577296 CGATGACCTCCTTCAATAATAGACTAA 58.423 37.037 0.00 0.00 0.00 2.24
5148 5711 7.724506 ACGATGACCTCCTTCAATAATAGACTA 59.275 37.037 0.00 0.00 0.00 2.59
5149 5712 6.551601 ACGATGACCTCCTTCAATAATAGACT 59.448 38.462 0.00 0.00 0.00 3.24
5150 5713 6.750148 ACGATGACCTCCTTCAATAATAGAC 58.250 40.000 0.00 0.00 0.00 2.59
5151 5714 6.978674 ACGATGACCTCCTTCAATAATAGA 57.021 37.500 0.00 0.00 0.00 1.98
5152 5715 7.658261 TGTACGATGACCTCCTTCAATAATAG 58.342 38.462 0.00 0.00 0.00 1.73
5153 5716 7.591421 TGTACGATGACCTCCTTCAATAATA 57.409 36.000 0.00 0.00 0.00 0.98
5154 5717 6.479972 TGTACGATGACCTCCTTCAATAAT 57.520 37.500 0.00 0.00 0.00 1.28
5155 5718 5.925506 TGTACGATGACCTCCTTCAATAA 57.074 39.130 0.00 0.00 0.00 1.40
5156 5719 5.163447 CCTTGTACGATGACCTCCTTCAATA 60.163 44.000 0.00 0.00 0.00 1.90
5173 5740 4.577283 TCAACCACAGCTTTAACCTTGTAC 59.423 41.667 0.00 0.00 0.00 2.90
5218 5796 4.453478 ACAATGTGCATCTGAACTGTACAG 59.547 41.667 21.44 21.44 41.46 2.74
5238 5816 0.981183 ACCGCCCTTCATCTACACAA 59.019 50.000 0.00 0.00 0.00 3.33
5245 5823 0.744771 GTCCTCAACCGCCCTTCATC 60.745 60.000 0.00 0.00 0.00 2.92
5249 5827 1.228154 GTTGTCCTCAACCGCCCTT 60.228 57.895 0.30 0.00 45.60 3.95
5277 5855 6.391537 TGTGCGTGTAATCAACTCTTGTATA 58.608 36.000 0.00 0.00 0.00 1.47
5297 5875 2.675844 TGCGAGTAAATGTACCATGTGC 59.324 45.455 0.00 0.00 0.00 4.57
5325 5903 3.426695 CGCATGATCTTCAACCCTTTCAC 60.427 47.826 0.00 0.00 0.00 3.18
5328 5906 3.012518 CTCGCATGATCTTCAACCCTTT 58.987 45.455 0.00 0.00 0.00 3.11
5394 5980 5.178623 TCGAACCAAGTAAATAACTGCACAG 59.821 40.000 0.00 0.00 38.88 3.66
5475 6061 1.377856 GGAGTGCCCTTCCTTCTGC 60.378 63.158 0.00 0.00 0.00 4.26
5494 6080 2.080286 GGTTCACGATGCTACACACT 57.920 50.000 0.00 0.00 0.00 3.55
5610 6518 1.128692 GTCCATGACAGTAAGCAACGC 59.871 52.381 0.00 0.00 32.09 4.84
5611 6519 2.412870 TGTCCATGACAGTAAGCAACG 58.587 47.619 0.00 0.00 37.67 4.10
5744 6658 1.208293 GGAGTAGGGCAGAAGAGTTGG 59.792 57.143 0.00 0.00 0.00 3.77
5745 6659 1.902508 TGGAGTAGGGCAGAAGAGTTG 59.097 52.381 0.00 0.00 0.00 3.16
5760 6674 6.926630 AGATCTGTAGTTTTTCTCTGGAGT 57.073 37.500 0.00 0.00 0.00 3.85
5784 6703 5.124457 CCACACAGCAGCTTAGAATTTATGT 59.876 40.000 0.00 0.00 0.00 2.29
5786 6705 5.500234 TCCACACAGCAGCTTAGAATTTAT 58.500 37.500 0.00 0.00 0.00 1.40
5787 6706 4.905429 TCCACACAGCAGCTTAGAATTTA 58.095 39.130 0.00 0.00 0.00 1.40
5788 6707 3.754965 TCCACACAGCAGCTTAGAATTT 58.245 40.909 0.00 0.00 0.00 1.82
5789 6708 3.341823 CTCCACACAGCAGCTTAGAATT 58.658 45.455 0.00 0.00 0.00 2.17
5790 6709 2.355513 CCTCCACACAGCAGCTTAGAAT 60.356 50.000 0.00 0.00 0.00 2.40
5791 6710 1.002430 CCTCCACACAGCAGCTTAGAA 59.998 52.381 0.00 0.00 0.00 2.10
5792 6711 0.610174 CCTCCACACAGCAGCTTAGA 59.390 55.000 0.00 0.00 0.00 2.10
5793 6712 0.610174 TCCTCCACACAGCAGCTTAG 59.390 55.000 0.00 0.00 0.00 2.18
5794 6713 0.610174 CTCCTCCACACAGCAGCTTA 59.390 55.000 0.00 0.00 0.00 3.09
5795 6714 1.123861 TCTCCTCCACACAGCAGCTT 61.124 55.000 0.00 0.00 0.00 3.74
5796 6715 0.908656 ATCTCCTCCACACAGCAGCT 60.909 55.000 0.00 0.00 0.00 4.24
5918 6837 0.673644 CGTCGAAGGGAACAAGGCAT 60.674 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.