Multiple sequence alignment - TraesCS2A01G516900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G516900 chr2A 100.000 3057 0 0 1 3057 740255329 740252273 0.000000e+00 5646.0
1 TraesCS2A01G516900 chr2A 72.056 569 103 39 4 541 23896384 23896927 5.350000e-23 119.0
2 TraesCS2A01G516900 chr2D 94.099 1271 61 11 605 1868 608661863 608660600 0.000000e+00 1919.0
3 TraesCS2A01G516900 chr2D 83.974 624 73 13 4 618 608675777 608675172 9.510000e-160 573.0
4 TraesCS2A01G516900 chr2D 88.106 227 26 1 2380 2605 636481508 636481734 5.020000e-68 268.0
5 TraesCS2A01G516900 chr2D 86.266 233 22 5 2636 2860 636481729 636481959 8.470000e-61 244.0
6 TraesCS2A01G516900 chr2D 78.067 269 40 5 639 888 367155873 367156141 5.280000e-33 152.0
7 TraesCS2A01G516900 chr2D 86.260 131 17 1 634 763 417542885 417542755 1.140000e-29 141.0
8 TraesCS2A01G516900 chr2D 78.846 156 26 5 58 211 106855992 106856142 6.980000e-17 99.0
9 TraesCS2A01G516900 chr2B 88.811 1135 97 12 1 1116 742384836 742383713 0.000000e+00 1365.0
10 TraesCS2A01G516900 chr2B 97.252 655 18 0 1206 1860 742383684 742383030 0.000000e+00 1110.0
11 TraesCS2A01G516900 chr2B 92.903 310 11 7 2062 2361 757336111 757336419 1.010000e-119 440.0
12 TraesCS2A01G516900 chr2B 96.386 83 3 0 2974 3056 757336958 757337040 1.480000e-28 137.0
13 TraesCS2A01G516900 chr2B 75.887 282 51 12 274 541 458070121 458069843 8.900000e-26 128.0
14 TraesCS2A01G516900 chr2B 77.027 148 29 5 56 201 156837417 156837561 2.530000e-11 80.5
15 TraesCS2A01G516900 chr1B 83.882 577 61 17 2377 2929 640060581 640061149 3.490000e-144 521.0
16 TraesCS2A01G516900 chr1B 75.862 203 36 10 336 526 388398767 388398566 1.170000e-14 91.6
17 TraesCS2A01G516900 chr4B 85.835 473 53 8 2380 2844 649121842 649121376 9.850000e-135 490.0
18 TraesCS2A01G516900 chr4B 91.304 207 14 4 1873 2078 107849877 107849674 2.320000e-71 279.0
19 TraesCS2A01G516900 chr4B 77.075 253 39 12 630 865 125424626 125424876 8.900000e-26 128.0
20 TraesCS2A01G516900 chr3B 94.754 305 7 5 2065 2361 616078669 616078972 1.660000e-127 466.0
21 TraesCS2A01G516900 chr3B 85.287 401 43 12 2484 2876 456399354 456399746 1.710000e-107 399.0
22 TraesCS2A01G516900 chr3B 95.181 83 4 0 2974 3056 616079503 616079585 6.880000e-27 132.0
23 TraesCS2A01G516900 chr3A 94.426 305 9 2 2065 2361 646844752 646845056 2.150000e-126 462.0
24 TraesCS2A01G516900 chr3A 95.288 191 8 1 1873 2062 24682217 24682027 4.950000e-78 302.0
25 TraesCS2A01G516900 chr3A 85.593 236 31 3 2065 2298 569623912 569624146 8.470000e-61 244.0
26 TraesCS2A01G516900 chr3A 84.454 238 34 3 2065 2300 569625610 569625374 6.590000e-57 231.0
27 TraesCS2A01G516900 chr3A 78.661 239 36 7 63 301 560114015 560114238 8.830000e-31 145.0
28 TraesCS2A01G516900 chr3A 100.000 40 0 0 2974 3013 646845595 646845634 1.180000e-09 75.0
29 TraesCS2A01G516900 chr3D 92.760 221 12 4 2065 2282 394926448 394926229 1.770000e-82 316.0
30 TraesCS2A01G516900 chr3D 91.518 224 15 4 2062 2282 443422761 443422983 3.830000e-79 305.0
31 TraesCS2A01G516900 chr3D 91.071 224 16 4 2062 2282 154052770 154052992 1.780000e-77 300.0
32 TraesCS2A01G516900 chr3D 78.039 255 31 11 636 866 580128145 580128398 1.480000e-28 137.0
33 TraesCS2A01G516900 chr3D 87.500 56 3 3 883 936 56294040 56294093 9.150000e-06 62.1
34 TraesCS2A01G516900 chr3D 87.037 54 7 0 883 936 56307732 56307785 9.150000e-06 62.1
35 TraesCS2A01G516900 chr6B 92.377 223 11 4 2065 2282 88305063 88305284 2.290000e-81 313.0
36 TraesCS2A01G516900 chr6B 79.515 371 55 14 2509 2870 614579353 614579711 8.470000e-61 244.0
37 TraesCS2A01G516900 chr6B 90.323 186 17 1 2360 2544 18228959 18228774 3.050000e-60 243.0
38 TraesCS2A01G516900 chr6B 87.793 213 18 5 1870 2078 116461241 116461449 3.050000e-60 243.0
39 TraesCS2A01G516900 chr6B 90.323 186 17 1 2360 2544 693942055 693942240 3.050000e-60 243.0
40 TraesCS2A01G516900 chr6B 85.926 135 17 2 630 763 584057920 584058053 3.180000e-30 143.0
41 TraesCS2A01G516900 chr7D 91.855 221 14 4 2065 2282 73562147 73561928 3.830000e-79 305.0
42 TraesCS2A01G516900 chr7D 91.787 207 13 4 1873 2078 544371421 544371624 4.990000e-73 285.0
43 TraesCS2A01G516900 chr7D 87.500 232 27 2 2380 2610 88896159 88895929 1.810000e-67 267.0
44 TraesCS2A01G516900 chr7D 86.420 243 23 6 2636 2870 571233673 571233913 1.090000e-64 257.0
45 TraesCS2A01G516900 chr7D 82.243 107 16 2 764 869 6135159 6135055 4.200000e-14 89.8
46 TraesCS2A01G516900 chr7B 85.338 266 34 5 2065 2327 36472639 36472376 1.400000e-68 270.0
47 TraesCS2A01G516900 chr7B 92.473 186 14 0 1873 2058 592869273 592869458 1.810000e-67 267.0
48 TraesCS2A01G516900 chr7B 89.320 206 19 3 1873 2078 592809481 592809683 3.910000e-64 255.0
49 TraesCS2A01G516900 chr7B 85.294 238 33 2 2065 2301 551942598 551942362 8.470000e-61 244.0
50 TraesCS2A01G516900 chr7B 74.188 554 110 21 4 541 535687852 535687316 1.860000e-47 200.0
51 TraesCS2A01G516900 chr7B 73.145 283 55 15 243 511 549921765 549922040 7.030000e-12 82.4
52 TraesCS2A01G516900 chr5A 90.338 207 16 4 1873 2078 23431698 23431901 5.020000e-68 268.0
53 TraesCS2A01G516900 chr5A 84.305 223 24 8 2652 2866 53239076 53239295 1.110000e-49 207.0
54 TraesCS2A01G516900 chr5A 79.208 202 34 7 1 196 89981800 89981999 1.910000e-27 134.0
55 TraesCS2A01G516900 chr5A 80.328 122 22 2 764 884 476304545 476304425 1.170000e-14 91.6
56 TraesCS2A01G516900 chr5A 78.906 128 25 2 63 189 37611096 37611222 5.430000e-13 86.1
57 TraesCS2A01G516900 chr7A 84.874 238 32 4 2065 2299 115270784 115270548 1.420000e-58 237.0
58 TraesCS2A01G516900 chr7A 80.319 188 33 4 657 841 88830582 88830768 4.110000e-29 139.0
59 TraesCS2A01G516900 chr7A 78.636 220 39 6 4 217 96538977 96538760 4.110000e-29 139.0
60 TraesCS2A01G516900 chr7A 74.142 379 75 13 1 373 566212012 566212373 5.320000e-28 135.0
61 TraesCS2A01G516900 chr4D 86.471 170 21 2 2436 2603 497451273 497451442 5.210000e-43 185.0
62 TraesCS2A01G516900 chr4D 75.522 335 60 16 224 541 398290970 398290641 8.830000e-31 145.0
63 TraesCS2A01G516900 chr1A 81.304 230 40 2 640 868 478427138 478426911 1.870000e-42 183.0
64 TraesCS2A01G516900 chr5B 74.545 495 88 23 63 536 163258538 163258061 6.730000e-42 182.0
65 TraesCS2A01G516900 chr5B 81.618 136 23 2 56 190 16198011 16198145 8.960000e-21 111.0
66 TraesCS2A01G516900 chr6A 84.211 133 19 2 630 761 536762584 536762453 8.900000e-26 128.0
67 TraesCS2A01G516900 chr4A 83.582 134 18 3 631 760 637936791 637936924 4.140000e-24 122.0
68 TraesCS2A01G516900 chr6D 71.636 550 113 28 6 542 365456409 365455890 8.960000e-21 111.0
69 TraesCS2A01G516900 chr1D 76.151 239 40 11 291 517 3511590 3511357 3.220000e-20 110.0
70 TraesCS2A01G516900 chr1D 73.004 263 53 13 254 502 484103323 484103065 3.270000e-10 76.8
71 TraesCS2A01G516900 chr5D 83.810 105 15 2 764 867 498288851 498288748 6.980000e-17 99.0
72 TraesCS2A01G516900 chrUn 82.243 107 16 2 764 869 294479485 294479381 4.200000e-14 89.8
73 TraesCS2A01G516900 chrUn 71.638 409 80 27 151 539 79600529 79600921 2.530000e-11 80.5
74 TraesCS2A01G516900 chrUn 71.638 409 80 27 151 539 289413334 289413726 2.530000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G516900 chr2A 740252273 740255329 3056 True 5646.0 5646 100.0000 1 3057 1 chr2A.!!$R1 3056
1 TraesCS2A01G516900 chr2D 608660600 608661863 1263 True 1919.0 1919 94.0990 605 1868 1 chr2D.!!$R2 1263
2 TraesCS2A01G516900 chr2D 608675172 608675777 605 True 573.0 573 83.9740 4 618 1 chr2D.!!$R3 614
3 TraesCS2A01G516900 chr2B 742383030 742384836 1806 True 1237.5 1365 93.0315 1 1860 2 chr2B.!!$R2 1859
4 TraesCS2A01G516900 chr2B 757336111 757337040 929 False 288.5 440 94.6445 2062 3056 2 chr2B.!!$F2 994
5 TraesCS2A01G516900 chr1B 640060581 640061149 568 False 521.0 521 83.8820 2377 2929 1 chr1B.!!$F1 552
6 TraesCS2A01G516900 chr3B 616078669 616079585 916 False 299.0 466 94.9675 2065 3056 2 chr3B.!!$F2 991
7 TraesCS2A01G516900 chr3A 646844752 646845634 882 False 268.5 462 97.2130 2065 3013 2 chr3A.!!$F3 948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 798 0.034186 TCCTTTAGGGCACATGCAGG 60.034 55.0 6.15 0.0 44.36 4.85 F
1861 1899 0.738975 GCGGCCTCATTAGGGTTTTC 59.261 55.0 0.00 0.0 43.87 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2000 0.035152 TGACCGAATGCTGGCTTGAT 60.035 50.000 0.00 0.00 0.0 2.57 R
2933 3223 1.133407 CCTTCTCCTGTGTACGAGCTC 59.867 57.143 2.73 2.73 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 68 0.976641 CACCCTTGTCACTGGAGCTA 59.023 55.000 0.00 0.00 0.00 3.32
115 122 3.006537 GTCATCGTGCTAAGGCCCTATAA 59.993 47.826 0.00 0.00 37.74 0.98
141 148 4.882671 AGCACACTAGAACAACAAACAG 57.117 40.909 0.00 0.00 0.00 3.16
166 173 3.628032 ACGATGAAGAGAAGCGTAGATCA 59.372 43.478 0.00 0.00 32.94 2.92
167 174 4.096532 ACGATGAAGAGAAGCGTAGATCAA 59.903 41.667 0.00 0.00 32.94 2.57
195 202 3.452990 TCCAACCTCTAGACACACAAACA 59.547 43.478 0.00 0.00 0.00 2.83
201 208 5.069914 ACCTCTAGACACACAAACACATACA 59.930 40.000 0.00 0.00 0.00 2.29
202 209 5.635280 CCTCTAGACACACAAACACATACAG 59.365 44.000 0.00 0.00 0.00 2.74
208 215 3.184379 CACACAAACACATACAGACGGAG 59.816 47.826 0.00 0.00 0.00 4.63
209 216 3.069016 ACACAAACACATACAGACGGAGA 59.931 43.478 0.00 0.00 0.00 3.71
210 217 3.428870 CACAAACACATACAGACGGAGAC 59.571 47.826 0.00 0.00 0.00 3.36
211 218 3.321111 ACAAACACATACAGACGGAGACT 59.679 43.478 0.00 0.00 0.00 3.24
212 219 4.202223 ACAAACACATACAGACGGAGACTT 60.202 41.667 0.00 0.00 0.00 3.01
213 220 3.577649 ACACATACAGACGGAGACTTG 57.422 47.619 0.00 0.00 0.00 3.16
214 221 3.154710 ACACATACAGACGGAGACTTGA 58.845 45.455 0.00 0.00 0.00 3.02
215 222 3.764434 ACACATACAGACGGAGACTTGAT 59.236 43.478 0.00 0.00 0.00 2.57
216 223 4.142359 ACACATACAGACGGAGACTTGATC 60.142 45.833 0.00 0.00 0.00 2.92
217 224 4.097135 CACATACAGACGGAGACTTGATCT 59.903 45.833 0.00 0.00 41.91 2.75
218 225 5.297029 CACATACAGACGGAGACTTGATCTA 59.703 44.000 0.00 0.00 38.00 1.98
219 226 5.297278 ACATACAGACGGAGACTTGATCTAC 59.703 44.000 0.00 0.00 38.00 2.59
220 227 3.687125 ACAGACGGAGACTTGATCTACA 58.313 45.455 0.00 0.00 38.35 2.74
221 228 4.274147 ACAGACGGAGACTTGATCTACAT 58.726 43.478 0.00 0.00 38.35 2.29
222 229 4.097135 ACAGACGGAGACTTGATCTACATG 59.903 45.833 0.00 0.00 38.35 3.21
234 241 6.841229 ACTTGATCTACATGGACTGGATCTAA 59.159 38.462 7.08 1.15 35.30 2.10
255 267 2.178912 TGGATCCACCGAAGACAAAC 57.821 50.000 11.44 0.00 42.61 2.93
267 279 4.563524 GAAGACAAACGTCGATCGAATT 57.436 40.909 21.31 14.46 42.86 2.17
278 290 2.879026 TCGATCGAATTCCGTGAGATCT 59.121 45.455 16.99 0.00 39.75 2.75
285 297 0.606096 TTCCGTGAGATCTGCCGAAA 59.394 50.000 0.00 0.00 0.00 3.46
288 300 0.366871 CGTGAGATCTGCCGAAAACG 59.633 55.000 0.00 0.00 0.00 3.60
308 320 2.432628 CCTTCACACGTCCTCCGC 60.433 66.667 0.00 0.00 41.42 5.54
320 332 0.981183 TCCTCCGCCAAAGCTAGAAA 59.019 50.000 0.00 0.00 36.60 2.52
327 339 0.165944 CCAAAGCTAGAAACACCGCG 59.834 55.000 0.00 0.00 0.00 6.46
352 364 1.135960 GAGGGCTAGGCAAGGAGAAT 58.864 55.000 19.14 0.00 0.00 2.40
369 381 7.688918 AGGAGAATCTTATTCCATCTTCAGT 57.311 36.000 0.00 0.00 33.32 3.41
406 418 2.287977 AGCAGGACCAAAACCCTAAC 57.712 50.000 0.00 0.00 0.00 2.34
431 443 8.260114 ACAAAACTCAAGAAGACATCCAAAAAT 58.740 29.630 0.00 0.00 0.00 1.82
468 480 0.755698 GAGGGCTCGGATCCACTACA 60.756 60.000 13.41 0.00 0.00 2.74
472 484 1.688772 GCTCGGATCCACTACACCTA 58.311 55.000 13.41 0.00 0.00 3.08
482 494 1.139058 CACTACACCTACATGGCCCTC 59.861 57.143 0.00 0.00 40.22 4.30
590 602 3.446516 GGGTACGACTTGAACCTAGATGT 59.553 47.826 0.00 0.00 33.59 3.06
615 627 7.713507 GTGTTGTTAGGCACATATATAGTTGGA 59.286 37.037 0.00 0.00 34.43 3.53
670 685 0.944386 CCCCGACATAGATTTTGCCG 59.056 55.000 0.00 0.00 0.00 5.69
676 691 2.872858 GACATAGATTTTGCCGTCTCCC 59.127 50.000 0.00 0.00 0.00 4.30
748 763 3.445096 GGTGCTTCAAATCTATGCAAGGT 59.555 43.478 0.00 0.00 35.34 3.50
752 767 4.795278 GCTTCAAATCTATGCAAGGTTTCG 59.205 41.667 0.00 0.00 36.33 3.46
769 784 0.664761 TCGACGACGACAAGTCCTTT 59.335 50.000 5.75 0.00 46.92 3.11
782 797 1.098050 GTCCTTTAGGGCACATGCAG 58.902 55.000 6.15 0.00 44.36 4.41
783 798 0.034186 TCCTTTAGGGCACATGCAGG 60.034 55.000 6.15 0.00 44.36 4.85
794 809 2.873245 GCACATGCAGGAAGACTTCTCA 60.873 50.000 14.72 10.53 41.59 3.27
884 899 2.277969 TGGCGACAGTTTTGTTCGTTA 58.722 42.857 0.00 0.00 37.76 3.18
911 926 2.362717 GAGATCCTTTGTACTCTCCCGG 59.637 54.545 0.00 0.00 0.00 5.73
975 1002 5.431765 AGTACAGATAACAATGCAAGAGGG 58.568 41.667 0.00 0.00 0.00 4.30
1104 1142 2.222027 CGGCATTATCCTGAACCTTCC 58.778 52.381 0.00 0.00 0.00 3.46
1105 1143 2.222027 GGCATTATCCTGAACCTTCCG 58.778 52.381 0.00 0.00 0.00 4.30
1145 1183 4.053295 GGTTAATAAAGCCGTGCGATCTA 58.947 43.478 0.00 0.00 0.00 1.98
1162 1200 5.710984 CGATCTAATACCGCCTGTCTAAAT 58.289 41.667 0.00 0.00 0.00 1.40
1516 1554 2.915659 AGGCCAACGGTCTCACGA 60.916 61.111 5.01 0.00 27.34 4.35
1827 1865 1.062206 CTCCGACTTCGCCGTCTAC 59.938 63.158 0.00 0.00 38.18 2.59
1838 1876 2.575262 CGTCTACCGCGTCGAACC 60.575 66.667 4.92 0.00 0.00 3.62
1861 1899 0.738975 GCGGCCTCATTAGGGTTTTC 59.261 55.000 0.00 0.00 43.87 2.29
1865 1903 3.509967 CGGCCTCATTAGGGTTTTCTTTT 59.490 43.478 0.00 0.00 43.87 2.27
1866 1904 4.021456 CGGCCTCATTAGGGTTTTCTTTTT 60.021 41.667 0.00 0.00 43.87 1.94
1894 1932 3.559238 TTTTTCGGCAATCAAGAGAGC 57.441 42.857 0.00 0.00 0.00 4.09
1895 1933 2.479566 TTTCGGCAATCAAGAGAGCT 57.520 45.000 0.00 0.00 0.00 4.09
1896 1934 2.479566 TTCGGCAATCAAGAGAGCTT 57.520 45.000 0.00 0.00 33.74 3.74
1897 1935 2.479566 TCGGCAATCAAGAGAGCTTT 57.520 45.000 0.00 0.00 30.14 3.51
1898 1936 3.610040 TCGGCAATCAAGAGAGCTTTA 57.390 42.857 0.00 0.00 30.14 1.85
1899 1937 4.142609 TCGGCAATCAAGAGAGCTTTAT 57.857 40.909 0.00 0.00 30.14 1.40
1900 1938 4.517285 TCGGCAATCAAGAGAGCTTTATT 58.483 39.130 0.00 0.00 30.15 1.40
1901 1939 5.670485 TCGGCAATCAAGAGAGCTTTATTA 58.330 37.500 0.00 0.00 29.30 0.98
1902 1940 6.112734 TCGGCAATCAAGAGAGCTTTATTAA 58.887 36.000 0.00 0.00 29.30 1.40
1903 1941 6.597672 TCGGCAATCAAGAGAGCTTTATTAAA 59.402 34.615 0.00 0.00 29.30 1.52
1904 1942 7.283127 TCGGCAATCAAGAGAGCTTTATTAAAT 59.717 33.333 0.00 0.00 29.30 1.40
1905 1943 7.589221 CGGCAATCAAGAGAGCTTTATTAAATC 59.411 37.037 0.00 0.00 29.30 2.17
1906 1944 8.408601 GGCAATCAAGAGAGCTTTATTAAATCA 58.591 33.333 0.00 0.00 29.30 2.57
1907 1945 9.230932 GCAATCAAGAGAGCTTTATTAAATCAC 57.769 33.333 0.00 0.00 29.30 3.06
1910 1948 7.978982 TCAAGAGAGCTTTATTAAATCACAGC 58.021 34.615 0.00 0.00 30.14 4.40
1911 1949 7.607607 TCAAGAGAGCTTTATTAAATCACAGCA 59.392 33.333 0.00 0.00 30.14 4.41
1912 1950 7.551035 AGAGAGCTTTATTAAATCACAGCAG 57.449 36.000 0.00 0.00 0.00 4.24
1913 1951 7.334090 AGAGAGCTTTATTAAATCACAGCAGA 58.666 34.615 0.00 0.00 0.00 4.26
1914 1952 7.279758 AGAGAGCTTTATTAAATCACAGCAGAC 59.720 37.037 0.00 0.00 0.00 3.51
1915 1953 6.317391 AGAGCTTTATTAAATCACAGCAGACC 59.683 38.462 0.00 0.00 0.00 3.85
1916 1954 6.183347 AGCTTTATTAAATCACAGCAGACCT 58.817 36.000 0.00 0.00 0.00 3.85
1917 1955 7.338710 AGCTTTATTAAATCACAGCAGACCTA 58.661 34.615 0.00 0.00 0.00 3.08
1918 1956 7.995488 AGCTTTATTAAATCACAGCAGACCTAT 59.005 33.333 0.00 0.00 0.00 2.57
1919 1957 8.072567 GCTTTATTAAATCACAGCAGACCTATG 58.927 37.037 0.00 0.00 0.00 2.23
1920 1958 9.330063 CTTTATTAAATCACAGCAGACCTATGA 57.670 33.333 0.00 0.00 0.00 2.15
1921 1959 8.662781 TTATTAAATCACAGCAGACCTATGAC 57.337 34.615 0.00 0.00 0.00 3.06
1922 1960 4.558226 AAATCACAGCAGACCTATGACA 57.442 40.909 0.00 0.00 0.00 3.58
1923 1961 4.558226 AATCACAGCAGACCTATGACAA 57.442 40.909 0.00 0.00 0.00 3.18
1924 1962 4.767578 ATCACAGCAGACCTATGACAAT 57.232 40.909 0.00 0.00 0.00 2.71
1925 1963 4.128925 TCACAGCAGACCTATGACAATC 57.871 45.455 0.00 0.00 0.00 2.67
1926 1964 3.515104 TCACAGCAGACCTATGACAATCA 59.485 43.478 0.00 0.00 0.00 2.57
1927 1965 3.869832 CACAGCAGACCTATGACAATCAG 59.130 47.826 0.00 0.00 0.00 2.90
1928 1966 2.871022 CAGCAGACCTATGACAATCAGC 59.129 50.000 0.00 0.00 0.00 4.26
1929 1967 2.158842 AGCAGACCTATGACAATCAGCC 60.159 50.000 0.00 0.00 0.00 4.85
1930 1968 2.420547 GCAGACCTATGACAATCAGCCA 60.421 50.000 0.00 0.00 0.00 4.75
1931 1969 3.746751 GCAGACCTATGACAATCAGCCAT 60.747 47.826 0.00 0.00 0.00 4.40
1932 1970 4.063689 CAGACCTATGACAATCAGCCATC 58.936 47.826 0.00 0.00 0.00 3.51
1933 1971 3.713248 AGACCTATGACAATCAGCCATCA 59.287 43.478 0.00 0.00 0.00 3.07
1934 1972 4.164796 AGACCTATGACAATCAGCCATCAA 59.835 41.667 0.00 0.00 0.00 2.57
1935 1973 4.458397 ACCTATGACAATCAGCCATCAAG 58.542 43.478 0.00 0.00 0.00 3.02
1936 1974 3.252701 CCTATGACAATCAGCCATCAAGC 59.747 47.826 0.00 0.00 0.00 4.01
1937 1975 2.502142 TGACAATCAGCCATCAAGCT 57.498 45.000 0.00 0.00 46.45 3.74
1943 1981 4.730487 AGCCATCAAGCTGGTCAC 57.270 55.556 0.00 0.00 42.95 3.67
1944 1982 2.073232 AGCCATCAAGCTGGTCACT 58.927 52.632 0.00 0.00 42.95 3.41
1945 1983 1.279496 AGCCATCAAGCTGGTCACTA 58.721 50.000 0.00 0.00 42.95 2.74
1946 1984 1.209019 AGCCATCAAGCTGGTCACTAG 59.791 52.381 0.00 0.00 42.95 2.57
1947 1985 1.745141 GCCATCAAGCTGGTCACTAGG 60.745 57.143 0.00 0.00 38.63 3.02
1948 1986 1.833630 CCATCAAGCTGGTCACTAGGA 59.166 52.381 0.00 0.00 0.00 2.94
1949 1987 2.237143 CCATCAAGCTGGTCACTAGGAA 59.763 50.000 0.00 0.00 0.00 3.36
1950 1988 3.529533 CATCAAGCTGGTCACTAGGAAG 58.470 50.000 0.00 0.00 0.00 3.46
1951 1989 1.276421 TCAAGCTGGTCACTAGGAAGC 59.724 52.381 0.00 0.00 0.00 3.86
1952 1990 1.277557 CAAGCTGGTCACTAGGAAGCT 59.722 52.381 0.00 0.00 45.86 3.74
1953 1991 2.497675 CAAGCTGGTCACTAGGAAGCTA 59.502 50.000 7.15 0.00 43.22 3.32
1954 1992 2.383855 AGCTGGTCACTAGGAAGCTAG 58.616 52.381 0.00 0.00 42.25 3.42
1955 1993 1.410882 GCTGGTCACTAGGAAGCTAGG 59.589 57.143 0.00 0.00 0.00 3.02
1956 1994 2.741145 CTGGTCACTAGGAAGCTAGGT 58.259 52.381 0.00 0.00 0.00 3.08
1957 1995 3.899726 CTGGTCACTAGGAAGCTAGGTA 58.100 50.000 0.00 0.00 0.00 3.08
1958 1996 4.475345 CTGGTCACTAGGAAGCTAGGTAT 58.525 47.826 0.00 0.00 0.00 2.73
1959 1997 4.471548 TGGTCACTAGGAAGCTAGGTATC 58.528 47.826 0.00 0.00 0.00 2.24
1960 1998 4.079385 TGGTCACTAGGAAGCTAGGTATCA 60.079 45.833 0.00 0.00 0.00 2.15
1961 1999 4.278919 GGTCACTAGGAAGCTAGGTATCAC 59.721 50.000 0.00 0.00 0.00 3.06
1962 2000 4.888239 GTCACTAGGAAGCTAGGTATCACA 59.112 45.833 0.00 0.00 0.00 3.58
1963 2001 5.536916 GTCACTAGGAAGCTAGGTATCACAT 59.463 44.000 0.00 0.00 0.00 3.21
1964 2002 5.770663 TCACTAGGAAGCTAGGTATCACATC 59.229 44.000 0.00 0.00 0.00 3.06
1965 2003 5.536538 CACTAGGAAGCTAGGTATCACATCA 59.463 44.000 0.00 0.00 0.00 3.07
1966 2004 6.040955 CACTAGGAAGCTAGGTATCACATCAA 59.959 42.308 0.00 0.00 0.00 2.57
1967 2005 5.543507 AGGAAGCTAGGTATCACATCAAG 57.456 43.478 0.00 0.00 0.00 3.02
1968 2006 4.061596 GGAAGCTAGGTATCACATCAAGC 58.938 47.826 0.00 0.00 0.00 4.01
1969 2007 3.760580 AGCTAGGTATCACATCAAGCC 57.239 47.619 0.00 0.00 0.00 4.35
1970 2008 3.041211 AGCTAGGTATCACATCAAGCCA 58.959 45.455 0.00 0.00 0.00 4.75
1971 2009 3.070734 AGCTAGGTATCACATCAAGCCAG 59.929 47.826 0.00 0.00 0.00 4.85
1972 2010 2.338577 AGGTATCACATCAAGCCAGC 57.661 50.000 0.00 0.00 0.00 4.85
1973 2011 1.561076 AGGTATCACATCAAGCCAGCA 59.439 47.619 0.00 0.00 0.00 4.41
1974 2012 2.174210 AGGTATCACATCAAGCCAGCAT 59.826 45.455 0.00 0.00 0.00 3.79
1975 2013 2.954318 GGTATCACATCAAGCCAGCATT 59.046 45.455 0.00 0.00 0.00 3.56
1976 2014 3.004106 GGTATCACATCAAGCCAGCATTC 59.996 47.826 0.00 0.00 0.00 2.67
1977 2015 1.089112 TCACATCAAGCCAGCATTCG 58.911 50.000 0.00 0.00 0.00 3.34
1978 2016 0.099968 CACATCAAGCCAGCATTCGG 59.900 55.000 0.00 0.00 0.00 4.30
1979 2017 0.322816 ACATCAAGCCAGCATTCGGT 60.323 50.000 0.00 0.00 0.00 4.69
1980 2018 0.379669 CATCAAGCCAGCATTCGGTC 59.620 55.000 0.00 0.00 0.00 4.79
1981 2019 0.035152 ATCAAGCCAGCATTCGGTCA 60.035 50.000 0.00 0.00 0.00 4.02
1982 2020 0.035152 TCAAGCCAGCATTCGGTCAT 60.035 50.000 0.00 0.00 0.00 3.06
1983 2021 1.209261 TCAAGCCAGCATTCGGTCATA 59.791 47.619 0.00 0.00 0.00 2.15
1984 2022 2.158769 TCAAGCCAGCATTCGGTCATAT 60.159 45.455 0.00 0.00 0.00 1.78
1985 2023 2.620115 CAAGCCAGCATTCGGTCATATT 59.380 45.455 0.00 0.00 0.00 1.28
1986 2024 2.498167 AGCCAGCATTCGGTCATATTC 58.502 47.619 0.00 0.00 0.00 1.75
1987 2025 2.158769 AGCCAGCATTCGGTCATATTCA 60.159 45.455 0.00 0.00 0.00 2.57
1988 2026 2.618241 GCCAGCATTCGGTCATATTCAA 59.382 45.455 0.00 0.00 0.00 2.69
1989 2027 3.254166 GCCAGCATTCGGTCATATTCAAT 59.746 43.478 0.00 0.00 0.00 2.57
1990 2028 4.790878 CCAGCATTCGGTCATATTCAATG 58.209 43.478 0.00 0.00 0.00 2.82
1991 2029 4.276678 CCAGCATTCGGTCATATTCAATGT 59.723 41.667 0.00 0.00 0.00 2.71
1992 2030 5.209977 CAGCATTCGGTCATATTCAATGTG 58.790 41.667 0.00 0.00 0.00 3.21
1993 2031 3.976942 GCATTCGGTCATATTCAATGTGC 59.023 43.478 0.00 0.00 0.00 4.57
1994 2032 4.497842 GCATTCGGTCATATTCAATGTGCA 60.498 41.667 0.00 0.00 0.00 4.57
1995 2033 5.580661 CATTCGGTCATATTCAATGTGCAA 58.419 37.500 0.00 0.00 0.00 4.08
1996 2034 4.880886 TCGGTCATATTCAATGTGCAAG 57.119 40.909 0.00 0.00 0.00 4.01
1997 2035 3.065233 TCGGTCATATTCAATGTGCAAGC 59.935 43.478 0.00 0.00 0.00 4.01
1998 2036 3.181498 CGGTCATATTCAATGTGCAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
1999 2037 4.498513 CGGTCATATTCAATGTGCAAGCAT 60.499 41.667 0.00 0.00 0.00 3.79
2000 2038 4.743151 GGTCATATTCAATGTGCAAGCATG 59.257 41.667 0.00 0.00 0.00 4.06
2001 2039 5.345702 GTCATATTCAATGTGCAAGCATGT 58.654 37.500 0.00 0.00 0.00 3.21
2002 2040 5.808540 GTCATATTCAATGTGCAAGCATGTT 59.191 36.000 0.00 0.00 0.00 2.71
2003 2041 6.311935 GTCATATTCAATGTGCAAGCATGTTT 59.688 34.615 0.00 0.00 0.00 2.83
2004 2042 7.488792 GTCATATTCAATGTGCAAGCATGTTTA 59.511 33.333 0.00 0.00 0.00 2.01
2005 2043 7.703197 TCATATTCAATGTGCAAGCATGTTTAG 59.297 33.333 0.00 0.00 0.00 1.85
2006 2044 3.577667 TCAATGTGCAAGCATGTTTAGC 58.422 40.909 0.00 2.43 0.00 3.09
2007 2045 3.005578 TCAATGTGCAAGCATGTTTAGCA 59.994 39.130 12.74 12.74 0.00 3.49
2008 2046 3.880047 ATGTGCAAGCATGTTTAGCAT 57.120 38.095 17.33 9.74 37.56 3.79
2009 2047 4.987408 ATGTGCAAGCATGTTTAGCATA 57.013 36.364 17.33 15.75 37.56 3.14
2010 2048 4.987408 TGTGCAAGCATGTTTAGCATAT 57.013 36.364 17.33 0.00 37.56 1.78
2011 2049 6.638096 ATGTGCAAGCATGTTTAGCATATA 57.362 33.333 18.73 11.71 35.69 0.86
2012 2050 6.063640 TGTGCAAGCATGTTTAGCATATAG 57.936 37.500 17.33 0.00 37.56 1.31
2013 2051 5.821995 TGTGCAAGCATGTTTAGCATATAGA 59.178 36.000 17.33 3.69 37.56 1.98
2014 2052 6.487668 TGTGCAAGCATGTTTAGCATATAGAT 59.512 34.615 17.33 0.00 37.56 1.98
2015 2053 6.800408 GTGCAAGCATGTTTAGCATATAGATG 59.200 38.462 17.33 0.00 37.56 2.90
2016 2054 6.711645 TGCAAGCATGTTTAGCATATAGATGA 59.288 34.615 12.74 0.00 35.74 2.92
2017 2055 7.094933 TGCAAGCATGTTTAGCATATAGATGAG 60.095 37.037 12.74 0.00 35.74 2.90
2018 2056 6.981762 AGCATGTTTAGCATATAGATGAGC 57.018 37.500 0.39 0.00 35.74 4.26
2019 2057 5.879223 AGCATGTTTAGCATATAGATGAGCC 59.121 40.000 0.39 0.00 35.74 4.70
2020 2058 5.220548 GCATGTTTAGCATATAGATGAGCCG 60.221 44.000 0.39 0.00 35.74 5.52
2021 2059 5.722021 TGTTTAGCATATAGATGAGCCGA 57.278 39.130 0.39 0.00 34.73 5.54
2022 2060 6.096673 TGTTTAGCATATAGATGAGCCGAA 57.903 37.500 0.39 0.00 34.73 4.30
2023 2061 6.521162 TGTTTAGCATATAGATGAGCCGAAA 58.479 36.000 0.39 0.00 34.73 3.46
2024 2062 6.423905 TGTTTAGCATATAGATGAGCCGAAAC 59.576 38.462 0.39 3.90 34.73 2.78
2025 2063 4.607293 AGCATATAGATGAGCCGAAACA 57.393 40.909 0.39 0.00 34.73 2.83
2026 2064 5.157940 AGCATATAGATGAGCCGAAACAT 57.842 39.130 0.39 0.00 34.73 2.71
2027 2065 5.555017 AGCATATAGATGAGCCGAAACATT 58.445 37.500 0.39 0.00 34.73 2.71
2028 2066 6.701340 AGCATATAGATGAGCCGAAACATTA 58.299 36.000 0.39 0.00 34.73 1.90
2029 2067 6.815641 AGCATATAGATGAGCCGAAACATTAG 59.184 38.462 0.39 0.00 34.73 1.73
2030 2068 6.456181 GCATATAGATGAGCCGAAACATTAGC 60.456 42.308 0.39 0.00 34.73 3.09
2031 2069 2.565841 AGATGAGCCGAAACATTAGCC 58.434 47.619 0.00 0.00 0.00 3.93
2032 2070 1.261619 GATGAGCCGAAACATTAGCCG 59.738 52.381 0.00 0.00 0.00 5.52
2033 2071 0.248012 TGAGCCGAAACATTAGCCGA 59.752 50.000 0.00 0.00 0.00 5.54
2034 2072 1.338294 TGAGCCGAAACATTAGCCGAA 60.338 47.619 0.00 0.00 0.00 4.30
2035 2073 1.062148 GAGCCGAAACATTAGCCGAAC 59.938 52.381 0.00 0.00 0.00 3.95
2036 2074 0.800012 GCCGAAACATTAGCCGAACA 59.200 50.000 0.00 0.00 0.00 3.18
2037 2075 1.198178 GCCGAAACATTAGCCGAACAA 59.802 47.619 0.00 0.00 0.00 2.83
2038 2076 2.159435 GCCGAAACATTAGCCGAACAAT 60.159 45.455 0.00 0.00 0.00 2.71
2039 2077 3.672241 GCCGAAACATTAGCCGAACAATT 60.672 43.478 0.00 0.00 0.00 2.32
2040 2078 4.481463 CCGAAACATTAGCCGAACAATTT 58.519 39.130 0.00 0.00 0.00 1.82
2041 2079 5.632959 CCGAAACATTAGCCGAACAATTTA 58.367 37.500 0.00 0.00 0.00 1.40
2042 2080 6.262601 CCGAAACATTAGCCGAACAATTTAT 58.737 36.000 0.00 0.00 0.00 1.40
2043 2081 7.411274 CCGAAACATTAGCCGAACAATTTATA 58.589 34.615 0.00 0.00 0.00 0.98
2044 2082 8.073768 CCGAAACATTAGCCGAACAATTTATAT 58.926 33.333 0.00 0.00 0.00 0.86
2045 2083 8.891928 CGAAACATTAGCCGAACAATTTATATG 58.108 33.333 0.00 0.00 0.00 1.78
2046 2084 9.944663 GAAACATTAGCCGAACAATTTATATGA 57.055 29.630 0.00 0.00 0.00 2.15
2048 2086 9.950680 AACATTAGCCGAACAATTTATATGAAG 57.049 29.630 0.00 0.00 0.00 3.02
2049 2087 9.120538 ACATTAGCCGAACAATTTATATGAAGT 57.879 29.630 0.00 0.00 0.00 3.01
2052 2090 9.602568 TTAGCCGAACAATTTATATGAAGTACA 57.397 29.630 0.00 0.00 0.00 2.90
2053 2091 7.916552 AGCCGAACAATTTATATGAAGTACAC 58.083 34.615 0.00 0.00 0.00 2.90
2054 2092 7.769044 AGCCGAACAATTTATATGAAGTACACT 59.231 33.333 0.00 0.00 0.00 3.55
2055 2093 9.037737 GCCGAACAATTTATATGAAGTACACTA 57.962 33.333 0.00 0.00 0.00 2.74
2091 2129 7.386299 GTGAATTGCATAAAACCACCACATTTA 59.614 33.333 0.00 0.00 0.00 1.40
2364 2412 2.835431 CCTCGCCGGAGTGGAGAT 60.835 66.667 20.26 0.00 46.23 2.75
2365 2413 2.415010 CTCGCCGGAGTGGAGATG 59.585 66.667 5.05 0.00 46.23 2.90
2366 2414 2.362503 TCGCCGGAGTGGAGATGT 60.363 61.111 5.05 0.00 42.18 3.06
2367 2415 2.105128 CGCCGGAGTGGAGATGTC 59.895 66.667 5.05 0.00 40.56 3.06
2370 2418 2.435693 CCGGAGTGGAGATGTCCCC 61.436 68.421 6.41 0.00 43.15 4.81
2372 2420 2.501610 GAGTGGAGATGTCCCCGC 59.498 66.667 6.41 0.00 43.15 6.13
2373 2421 2.284625 AGTGGAGATGTCCCCGCA 60.285 61.111 6.41 0.00 43.15 5.69
2374 2422 2.125106 GTGGAGATGTCCCCGCAC 60.125 66.667 6.41 0.00 43.15 5.34
2375 2423 3.770040 TGGAGATGTCCCCGCACG 61.770 66.667 6.41 0.00 43.15 5.34
2454 2502 1.889829 GAGCTCCTGTGTAGTGTCTGT 59.110 52.381 0.87 0.00 0.00 3.41
2458 2506 0.667487 CCTGTGTAGTGTCTGTGGCG 60.667 60.000 0.00 0.00 0.00 5.69
2582 2631 2.182791 CTCGACGCTGTGGATGCT 59.817 61.111 0.00 0.00 0.00 3.79
2595 2644 1.304381 GATGCTGGCCAACCTCCAA 60.304 57.895 7.01 0.00 36.63 3.53
2601 2650 2.985847 GCCAACCTCCAAGCGCTT 60.986 61.111 18.98 18.98 0.00 4.68
2602 2651 2.982744 GCCAACCTCCAAGCGCTTC 61.983 63.158 22.21 1.22 0.00 3.86
2665 2716 1.595058 CCTCCCCTCCTCCTACACCT 61.595 65.000 0.00 0.00 0.00 4.00
2667 2718 1.075151 CCCCTCCTCCTACACCTCC 60.075 68.421 0.00 0.00 0.00 4.30
2669 2720 1.704082 CCTCCTCCTACACCTCCCA 59.296 63.158 0.00 0.00 0.00 4.37
2672 2723 0.790993 TCCTCCTACACCTCCCACTT 59.209 55.000 0.00 0.00 0.00 3.16
2676 2727 1.272554 CCTACACCTCCCACTTCCCC 61.273 65.000 0.00 0.00 0.00 4.81
2678 2729 0.252558 TACACCTCCCACTTCCCCTC 60.253 60.000 0.00 0.00 0.00 4.30
2682 2733 2.683933 TCCCACTTCCCCTCGCTC 60.684 66.667 0.00 0.00 0.00 5.03
2684 2735 3.382832 CCACTTCCCCTCGCTCGT 61.383 66.667 0.00 0.00 0.00 4.18
2787 2863 2.654877 GACTTCCCCGCAGTTCGA 59.345 61.111 0.00 0.00 41.67 3.71
2825 2907 2.770048 CCGCCCCCTCTCCATCTT 60.770 66.667 0.00 0.00 0.00 2.40
2841 2949 2.723530 TCTTCTTCCTCCCCTGTCTT 57.276 50.000 0.00 0.00 0.00 3.01
2846 2954 1.557371 CTTCCTCCCCTGTCTTTCTCC 59.443 57.143 0.00 0.00 0.00 3.71
2888 3014 3.963374 TCTCTCTCTCTCTCTCTCTCCAG 59.037 52.174 0.00 0.00 0.00 3.86
2889 3015 3.041211 TCTCTCTCTCTCTCTCTCCAGG 58.959 54.545 0.00 0.00 0.00 4.45
2890 3016 3.041211 CTCTCTCTCTCTCTCTCCAGGA 58.959 54.545 0.00 0.00 0.00 3.86
2891 3017 2.771943 TCTCTCTCTCTCTCTCCAGGAC 59.228 54.545 0.00 0.00 0.00 3.85
2892 3018 1.484653 TCTCTCTCTCTCTCCAGGACG 59.515 57.143 0.00 0.00 0.00 4.79
2893 3019 1.209504 CTCTCTCTCTCTCCAGGACGT 59.790 57.143 0.00 0.00 0.00 4.34
2894 3020 1.631388 TCTCTCTCTCTCCAGGACGTT 59.369 52.381 0.00 0.00 0.00 3.99
2897 3187 1.137825 CTCTCTCCAGGACGTTCGC 59.862 63.158 0.00 0.00 0.00 4.70
2901 3191 3.277211 CTCCAGGACGTTCGCGGAA 62.277 63.158 6.13 0.00 46.45 4.30
2941 3231 2.904676 CGCCGGCTATGAGCTCGTA 61.905 63.158 26.68 14.87 41.99 3.43
2942 3232 1.371881 GCCGGCTATGAGCTCGTAC 60.372 63.158 22.15 8.85 41.99 3.67
2943 3233 2.030551 CCGGCTATGAGCTCGTACA 58.969 57.895 11.74 0.00 41.99 2.90
2944 3234 0.317938 CCGGCTATGAGCTCGTACAC 60.318 60.000 11.74 7.07 41.99 2.90
2945 3235 0.380733 CGGCTATGAGCTCGTACACA 59.619 55.000 11.74 0.00 41.99 3.72
2946 3236 1.598183 CGGCTATGAGCTCGTACACAG 60.598 57.143 11.74 5.37 41.99 3.66
2947 3237 1.269309 GGCTATGAGCTCGTACACAGG 60.269 57.143 11.74 3.40 41.99 4.00
2959 3287 3.082548 CGTACACAGGAGAAGGAGAAGA 58.917 50.000 0.00 0.00 0.00 2.87
2960 3288 3.697045 CGTACACAGGAGAAGGAGAAGAT 59.303 47.826 0.00 0.00 0.00 2.40
2961 3289 4.882427 CGTACACAGGAGAAGGAGAAGATA 59.118 45.833 0.00 0.00 0.00 1.98
2962 3290 5.220892 CGTACACAGGAGAAGGAGAAGATAC 60.221 48.000 0.00 0.00 0.00 2.24
2963 3291 4.027437 ACACAGGAGAAGGAGAAGATACC 58.973 47.826 0.00 0.00 0.00 2.73
2964 3292 4.264623 ACACAGGAGAAGGAGAAGATACCT 60.265 45.833 0.00 0.00 38.23 3.08
2966 3294 5.894393 CACAGGAGAAGGAGAAGATACCTTA 59.106 44.000 0.00 0.00 45.08 2.69
2967 3295 6.553100 CACAGGAGAAGGAGAAGATACCTTAT 59.447 42.308 0.00 0.00 45.08 1.73
2968 3296 6.780522 ACAGGAGAAGGAGAAGATACCTTATC 59.219 42.308 10.77 10.77 46.97 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.977244 CAAGGGTGGCGGTTGCAC 61.977 66.667 0.00 0.00 45.35 4.57
40 41 1.302832 CTCCAGTGACAAGGGTGGC 60.303 63.158 0.00 0.00 0.00 5.01
48 55 1.055849 TTTGCCTAGCTCCAGTGACA 58.944 50.000 0.00 0.00 0.00 3.58
72 79 6.182627 TGACTTCTCGGGTGTCTACTATAAA 58.817 40.000 11.20 0.00 0.00 1.40
75 82 4.232188 TGACTTCTCGGGTGTCTACTAT 57.768 45.455 11.20 0.00 0.00 2.12
115 122 5.531122 TTGTTGTTCTAGTGTGCTAGTCT 57.469 39.130 0.00 0.00 43.86 3.24
141 148 0.798771 ACGCTTCTCTTCATCGTCGC 60.799 55.000 0.00 0.00 0.00 5.19
166 173 4.597507 TGTGTCTAGAGGTTGGATCCTTTT 59.402 41.667 14.23 0.00 38.02 2.27
167 174 4.020128 GTGTGTCTAGAGGTTGGATCCTTT 60.020 45.833 14.23 0.00 38.02 3.11
195 202 4.274147 AGATCAAGTCTCCGTCTGTATGT 58.726 43.478 0.00 0.00 28.45 2.29
201 208 3.634448 CCATGTAGATCAAGTCTCCGTCT 59.366 47.826 0.00 0.00 38.42 4.18
202 209 3.632604 TCCATGTAGATCAAGTCTCCGTC 59.367 47.826 0.00 0.00 38.42 4.79
208 215 5.304101 AGATCCAGTCCATGTAGATCAAGTC 59.696 44.000 0.00 0.00 36.61 3.01
209 216 5.215069 AGATCCAGTCCATGTAGATCAAGT 58.785 41.667 0.00 0.00 36.61 3.16
210 217 5.804944 AGATCCAGTCCATGTAGATCAAG 57.195 43.478 0.00 0.00 36.61 3.02
211 218 7.675161 TTTAGATCCAGTCCATGTAGATCAA 57.325 36.000 0.00 0.00 36.61 2.57
212 219 7.256439 CCATTTAGATCCAGTCCATGTAGATCA 60.256 40.741 0.00 0.00 36.61 2.92
213 220 7.038729 TCCATTTAGATCCAGTCCATGTAGATC 60.039 40.741 0.00 0.00 34.79 2.75
214 221 6.789457 TCCATTTAGATCCAGTCCATGTAGAT 59.211 38.462 0.00 0.00 0.00 1.98
215 222 6.143206 TCCATTTAGATCCAGTCCATGTAGA 58.857 40.000 0.00 0.00 0.00 2.59
216 223 6.425210 TCCATTTAGATCCAGTCCATGTAG 57.575 41.667 0.00 0.00 0.00 2.74
217 224 7.009179 GATCCATTTAGATCCAGTCCATGTA 57.991 40.000 0.00 0.00 37.31 2.29
218 225 5.874093 GATCCATTTAGATCCAGTCCATGT 58.126 41.667 0.00 0.00 37.31 3.21
234 241 3.081804 GTTTGTCTTCGGTGGATCCATT 58.918 45.455 19.62 0.00 35.57 3.16
255 267 1.113253 CTCACGGAATTCGATCGACG 58.887 55.000 19.26 19.81 42.43 5.12
267 279 0.606096 TTTTCGGCAGATCTCACGGA 59.394 50.000 13.74 4.40 0.00 4.69
278 290 0.658897 GTGAAGGTTCGTTTTCGGCA 59.341 50.000 0.00 0.00 44.25 5.69
285 297 0.462789 AGGACGTGTGAAGGTTCGTT 59.537 50.000 0.00 0.00 36.67 3.85
288 300 0.666577 CGGAGGACGTGTGAAGGTTC 60.667 60.000 0.00 0.00 37.93 3.62
308 320 0.165944 CGCGGTGTTTCTAGCTTTGG 59.834 55.000 0.00 0.00 0.00 3.28
352 364 4.442052 CGGCTCACTGAAGATGGAATAAGA 60.442 45.833 0.00 0.00 0.00 2.10
381 393 1.119684 GTTTTGGTCCTGCTTGGGTT 58.880 50.000 0.00 0.00 36.20 4.11
385 397 2.286365 TAGGGTTTTGGTCCTGCTTG 57.714 50.000 0.00 0.00 34.75 4.01
386 398 2.091555 TGTTAGGGTTTTGGTCCTGCTT 60.092 45.455 0.00 0.00 34.75 3.91
406 418 8.545420 CATTTTTGGATGTCTTCTTGAGTTTTG 58.455 33.333 0.00 0.00 0.00 2.44
482 494 1.364626 GCCTCGTCTCTTGTGGCATG 61.365 60.000 0.00 0.00 42.79 4.06
590 602 7.797062 TCCAACTATATATGTGCCTAACAACA 58.203 34.615 0.00 0.00 43.61 3.33
615 627 5.774690 ACATCCATACATGTTGGTGTTCTTT 59.225 36.000 19.83 5.90 32.81 2.52
670 685 2.043248 TCACCGCCCTAGGGAGAC 60.043 66.667 33.21 13.09 37.24 3.36
676 691 1.400530 CCCTAACCTCACCGCCCTAG 61.401 65.000 0.00 0.00 0.00 3.02
683 698 1.622312 ACGAGAAACCCTAACCTCACC 59.378 52.381 0.00 0.00 0.00 4.02
748 763 7.984855 CCTAAAGGACTTGTCGTCGTCGAAA 62.985 48.000 6.28 0.00 43.79 3.46
752 767 2.593257 CCTAAAGGACTTGTCGTCGTC 58.407 52.381 0.00 0.00 43.79 4.20
769 784 0.253044 GTCTTCCTGCATGTGCCCTA 59.747 55.000 2.07 0.00 41.18 3.53
782 797 5.573669 GTCGATAACAACTGAGAAGTCTTCC 59.426 44.000 9.04 1.99 0.00 3.46
783 798 6.150318 TGTCGATAACAACTGAGAAGTCTTC 58.850 40.000 4.26 4.26 34.03 2.87
794 809 5.050091 CAGCTTGAACTTGTCGATAACAACT 60.050 40.000 0.00 0.00 42.95 3.16
872 887 6.017357 AGGATCTCAAACCTAACGAACAAAAC 60.017 38.462 0.00 0.00 34.47 2.43
884 899 5.046231 GGAGAGTACAAAGGATCTCAAACCT 60.046 44.000 9.11 0.00 39.97 3.50
950 977 6.480320 CCCTCTTGCATTGTTATCTGTACTAC 59.520 42.308 0.00 0.00 0.00 2.73
951 978 6.582636 CCCTCTTGCATTGTTATCTGTACTA 58.417 40.000 0.00 0.00 0.00 1.82
952 979 5.431765 CCCTCTTGCATTGTTATCTGTACT 58.568 41.667 0.00 0.00 0.00 2.73
975 1002 1.606668 TGTTCAATTCACAAGTCGGGC 59.393 47.619 0.00 0.00 0.00 6.13
1080 1118 1.141053 GGTTCAGGATAATGCCGGACT 59.859 52.381 5.05 0.00 31.75 3.85
1104 1142 0.179282 CGAAAGCTTCCGAACGAACG 60.179 55.000 0.00 0.00 0.00 3.95
1105 1143 0.163146 CCGAAAGCTTCCGAACGAAC 59.837 55.000 6.68 0.00 0.00 3.95
1145 1183 3.709653 TCCAGATTTAGACAGGCGGTATT 59.290 43.478 0.00 0.00 0.00 1.89
1162 1200 3.371097 GATCGCGTTGGGCTCCAGA 62.371 63.158 5.77 0.00 40.44 3.86
1838 1876 2.111878 CCTAATGAGGCCGCCAGG 59.888 66.667 13.15 5.17 35.54 4.45
1874 1912 3.149196 AGCTCTCTTGATTGCCGAAAAA 58.851 40.909 0.00 0.00 0.00 1.94
1875 1913 2.783135 AGCTCTCTTGATTGCCGAAAA 58.217 42.857 0.00 0.00 0.00 2.29
1876 1914 2.479566 AGCTCTCTTGATTGCCGAAA 57.520 45.000 0.00 0.00 0.00 3.46
1877 1915 2.479566 AAGCTCTCTTGATTGCCGAA 57.520 45.000 0.00 0.00 0.00 4.30
1878 1916 2.479566 AAAGCTCTCTTGATTGCCGA 57.520 45.000 0.00 0.00 31.78 5.54
1879 1917 4.889832 AATAAAGCTCTCTTGATTGCCG 57.110 40.909 0.00 0.00 33.17 5.69
1880 1918 8.408601 TGATTTAATAAAGCTCTCTTGATTGCC 58.591 33.333 2.62 0.00 34.87 4.52
1881 1919 9.230932 GTGATTTAATAAAGCTCTCTTGATTGC 57.769 33.333 2.62 0.00 34.87 3.56
1884 1922 8.619546 GCTGTGATTTAATAAAGCTCTCTTGAT 58.380 33.333 2.62 0.00 31.78 2.57
1885 1923 7.607607 TGCTGTGATTTAATAAAGCTCTCTTGA 59.392 33.333 2.62 0.00 31.78 3.02
1886 1924 7.755591 TGCTGTGATTTAATAAAGCTCTCTTG 58.244 34.615 2.62 0.00 31.78 3.02
1887 1925 7.826252 TCTGCTGTGATTTAATAAAGCTCTCTT 59.174 33.333 2.62 0.00 0.00 2.85
1888 1926 7.279758 GTCTGCTGTGATTTAATAAAGCTCTCT 59.720 37.037 2.62 0.00 0.00 3.10
1889 1927 7.405769 GTCTGCTGTGATTTAATAAAGCTCTC 58.594 38.462 2.62 0.00 0.00 3.20
1890 1928 6.317391 GGTCTGCTGTGATTTAATAAAGCTCT 59.683 38.462 2.62 0.00 0.00 4.09
1891 1929 6.317391 AGGTCTGCTGTGATTTAATAAAGCTC 59.683 38.462 2.62 0.00 0.00 4.09
1892 1930 6.183347 AGGTCTGCTGTGATTTAATAAAGCT 58.817 36.000 2.62 0.00 0.00 3.74
1893 1931 6.442513 AGGTCTGCTGTGATTTAATAAAGC 57.557 37.500 0.00 0.00 0.00 3.51
1894 1932 9.330063 TCATAGGTCTGCTGTGATTTAATAAAG 57.670 33.333 0.00 0.00 0.00 1.85
1895 1933 9.109393 GTCATAGGTCTGCTGTGATTTAATAAA 57.891 33.333 0.00 0.00 0.00 1.40
1896 1934 8.264347 TGTCATAGGTCTGCTGTGATTTAATAA 58.736 33.333 0.00 0.00 0.00 1.40
1897 1935 7.791029 TGTCATAGGTCTGCTGTGATTTAATA 58.209 34.615 0.00 0.00 0.00 0.98
1898 1936 6.653020 TGTCATAGGTCTGCTGTGATTTAAT 58.347 36.000 0.00 0.00 0.00 1.40
1899 1937 6.048732 TGTCATAGGTCTGCTGTGATTTAA 57.951 37.500 0.00 0.00 0.00 1.52
1900 1938 5.675684 TGTCATAGGTCTGCTGTGATTTA 57.324 39.130 0.00 0.00 0.00 1.40
1901 1939 4.558226 TGTCATAGGTCTGCTGTGATTT 57.442 40.909 0.00 0.00 0.00 2.17
1902 1940 4.558226 TTGTCATAGGTCTGCTGTGATT 57.442 40.909 0.00 0.00 0.00 2.57
1903 1941 4.162888 TGATTGTCATAGGTCTGCTGTGAT 59.837 41.667 0.00 0.00 0.00 3.06
1904 1942 3.515104 TGATTGTCATAGGTCTGCTGTGA 59.485 43.478 0.00 0.00 0.00 3.58
1905 1943 3.865446 TGATTGTCATAGGTCTGCTGTG 58.135 45.455 0.00 0.00 0.00 3.66
1906 1944 3.681034 GCTGATTGTCATAGGTCTGCTGT 60.681 47.826 0.00 0.00 34.15 4.40
1907 1945 2.871022 GCTGATTGTCATAGGTCTGCTG 59.129 50.000 0.00 0.00 34.15 4.41
1908 1946 2.158842 GGCTGATTGTCATAGGTCTGCT 60.159 50.000 0.00 0.00 36.29 4.24
1909 1947 2.216898 GGCTGATTGTCATAGGTCTGC 58.783 52.381 0.00 0.00 35.59 4.26
1910 1948 3.548745 TGGCTGATTGTCATAGGTCTG 57.451 47.619 0.00 0.00 0.00 3.51
1911 1949 3.713248 TGATGGCTGATTGTCATAGGTCT 59.287 43.478 0.00 0.00 41.71 3.85
1912 1950 4.077300 TGATGGCTGATTGTCATAGGTC 57.923 45.455 0.00 0.00 41.71 3.85
1913 1951 4.458397 CTTGATGGCTGATTGTCATAGGT 58.542 43.478 0.00 0.00 41.71 3.08
1914 1952 3.252701 GCTTGATGGCTGATTGTCATAGG 59.747 47.826 0.00 0.00 41.71 2.57
1915 1953 4.135306 AGCTTGATGGCTGATTGTCATAG 58.865 43.478 0.00 0.00 41.71 2.23
1916 1954 4.160642 AGCTTGATGGCTGATTGTCATA 57.839 40.909 0.00 0.00 41.71 2.15
1917 1955 3.014304 AGCTTGATGGCTGATTGTCAT 57.986 42.857 0.00 0.00 44.77 3.06
1918 1956 2.502142 AGCTTGATGGCTGATTGTCA 57.498 45.000 0.00 0.00 41.43 3.58
1926 1964 1.209019 CTAGTGACCAGCTTGATGGCT 59.791 52.381 4.68 0.00 44.80 4.75
1927 1965 1.661341 CTAGTGACCAGCTTGATGGC 58.339 55.000 4.68 0.00 44.80 4.40
1928 1966 1.833630 TCCTAGTGACCAGCTTGATGG 59.166 52.381 3.10 3.10 46.47 3.51
1929 1967 3.529533 CTTCCTAGTGACCAGCTTGATG 58.470 50.000 0.00 0.00 0.00 3.07
1930 1968 2.093235 GCTTCCTAGTGACCAGCTTGAT 60.093 50.000 0.00 0.00 0.00 2.57
1931 1969 1.276421 GCTTCCTAGTGACCAGCTTGA 59.724 52.381 0.00 0.00 0.00 3.02
1932 1970 1.277557 AGCTTCCTAGTGACCAGCTTG 59.722 52.381 0.00 0.00 37.56 4.01
1933 1971 1.650528 AGCTTCCTAGTGACCAGCTT 58.349 50.000 0.00 0.00 37.56 3.74
1934 1972 2.383855 CTAGCTTCCTAGTGACCAGCT 58.616 52.381 0.00 10.41 43.33 4.24
1935 1973 1.410882 CCTAGCTTCCTAGTGACCAGC 59.589 57.143 0.00 0.00 39.56 4.85
1936 1974 2.741145 ACCTAGCTTCCTAGTGACCAG 58.259 52.381 0.00 0.00 39.56 4.00
1937 1975 2.921834 ACCTAGCTTCCTAGTGACCA 57.078 50.000 0.00 0.00 39.56 4.02
1938 1976 4.278919 GTGATACCTAGCTTCCTAGTGACC 59.721 50.000 0.00 0.00 39.56 4.02
1939 1977 4.888239 TGTGATACCTAGCTTCCTAGTGAC 59.112 45.833 0.00 0.00 39.56 3.67
1940 1978 5.125367 TGTGATACCTAGCTTCCTAGTGA 57.875 43.478 0.00 0.00 39.56 3.41
1941 1979 5.536538 TGATGTGATACCTAGCTTCCTAGTG 59.463 44.000 0.00 0.00 39.56 2.74
1942 1980 5.706447 TGATGTGATACCTAGCTTCCTAGT 58.294 41.667 0.00 0.00 39.56 2.57
1943 1981 6.656632 TTGATGTGATACCTAGCTTCCTAG 57.343 41.667 0.00 0.00 40.64 3.02
1944 1982 5.011125 GCTTGATGTGATACCTAGCTTCCTA 59.989 44.000 0.00 0.00 0.00 2.94
1945 1983 4.202305 GCTTGATGTGATACCTAGCTTCCT 60.202 45.833 0.00 0.00 0.00 3.36
1946 1984 4.061596 GCTTGATGTGATACCTAGCTTCC 58.938 47.826 0.00 0.00 0.00 3.46
1947 1985 4.061596 GGCTTGATGTGATACCTAGCTTC 58.938 47.826 0.00 0.00 0.00 3.86
1948 1986 3.455910 TGGCTTGATGTGATACCTAGCTT 59.544 43.478 0.00 0.00 0.00 3.74
1949 1987 3.041211 TGGCTTGATGTGATACCTAGCT 58.959 45.455 0.00 0.00 0.00 3.32
1950 1988 3.397482 CTGGCTTGATGTGATACCTAGC 58.603 50.000 0.00 0.00 0.00 3.42
1951 1989 3.181462 TGCTGGCTTGATGTGATACCTAG 60.181 47.826 0.00 0.00 0.00 3.02
1952 1990 2.771372 TGCTGGCTTGATGTGATACCTA 59.229 45.455 0.00 0.00 0.00 3.08
1953 1991 1.561076 TGCTGGCTTGATGTGATACCT 59.439 47.619 0.00 0.00 0.00 3.08
1954 1992 2.042686 TGCTGGCTTGATGTGATACC 57.957 50.000 0.00 0.00 0.00 2.73
1955 1993 3.303593 CGAATGCTGGCTTGATGTGATAC 60.304 47.826 0.00 0.00 0.00 2.24
1956 1994 2.874086 CGAATGCTGGCTTGATGTGATA 59.126 45.455 0.00 0.00 0.00 2.15
1957 1995 1.674441 CGAATGCTGGCTTGATGTGAT 59.326 47.619 0.00 0.00 0.00 3.06
1958 1996 1.089112 CGAATGCTGGCTTGATGTGA 58.911 50.000 0.00 0.00 0.00 3.58
1959 1997 0.099968 CCGAATGCTGGCTTGATGTG 59.900 55.000 0.00 0.00 0.00 3.21
1960 1998 0.322816 ACCGAATGCTGGCTTGATGT 60.323 50.000 0.00 0.00 0.00 3.06
1961 1999 0.379669 GACCGAATGCTGGCTTGATG 59.620 55.000 0.00 0.00 0.00 3.07
1962 2000 0.035152 TGACCGAATGCTGGCTTGAT 60.035 50.000 0.00 0.00 0.00 2.57
1963 2001 0.035152 ATGACCGAATGCTGGCTTGA 60.035 50.000 0.00 0.00 0.00 3.02
1964 2002 1.667236 TATGACCGAATGCTGGCTTG 58.333 50.000 0.00 0.00 0.00 4.01
1965 2003 2.645838 ATATGACCGAATGCTGGCTT 57.354 45.000 0.00 0.00 0.00 4.35
1966 2004 2.158769 TGAATATGACCGAATGCTGGCT 60.159 45.455 0.00 0.00 0.00 4.75
1967 2005 2.221169 TGAATATGACCGAATGCTGGC 58.779 47.619 0.00 0.00 0.00 4.85
1968 2006 4.276678 ACATTGAATATGACCGAATGCTGG 59.723 41.667 0.00 0.00 0.00 4.85
1969 2007 5.209977 CACATTGAATATGACCGAATGCTG 58.790 41.667 0.00 0.00 0.00 4.41
1970 2008 4.261322 GCACATTGAATATGACCGAATGCT 60.261 41.667 0.00 0.00 0.00 3.79
1971 2009 3.976942 GCACATTGAATATGACCGAATGC 59.023 43.478 0.00 0.00 0.00 3.56
1972 2010 5.172460 TGCACATTGAATATGACCGAATG 57.828 39.130 0.00 0.00 0.00 2.67
1973 2011 5.734220 GCTTGCACATTGAATATGACCGAAT 60.734 40.000 0.00 0.00 0.00 3.34
1974 2012 4.438608 GCTTGCACATTGAATATGACCGAA 60.439 41.667 0.00 0.00 0.00 4.30
1975 2013 3.065233 GCTTGCACATTGAATATGACCGA 59.935 43.478 0.00 0.00 0.00 4.69
1976 2014 3.181498 TGCTTGCACATTGAATATGACCG 60.181 43.478 0.00 0.00 0.00 4.79
1977 2015 4.374843 TGCTTGCACATTGAATATGACC 57.625 40.909 0.00 0.00 0.00 4.02
1978 2016 5.345702 ACATGCTTGCACATTGAATATGAC 58.654 37.500 0.00 0.00 0.00 3.06
1979 2017 5.585820 ACATGCTTGCACATTGAATATGA 57.414 34.783 0.00 0.00 0.00 2.15
1980 2018 6.656314 AAACATGCTTGCACATTGAATATG 57.344 33.333 0.00 0.00 0.00 1.78
1981 2019 6.477688 GCTAAACATGCTTGCACATTGAATAT 59.522 34.615 0.00 0.00 0.00 1.28
1982 2020 5.806502 GCTAAACATGCTTGCACATTGAATA 59.193 36.000 0.00 0.00 0.00 1.75
1983 2021 4.628333 GCTAAACATGCTTGCACATTGAAT 59.372 37.500 0.00 0.00 0.00 2.57
1984 2022 3.989167 GCTAAACATGCTTGCACATTGAA 59.011 39.130 0.00 0.00 0.00 2.69
1985 2023 3.005578 TGCTAAACATGCTTGCACATTGA 59.994 39.130 0.00 0.00 0.00 2.57
1986 2024 3.318886 TGCTAAACATGCTTGCACATTG 58.681 40.909 0.00 0.00 0.00 2.82
1987 2025 3.663995 TGCTAAACATGCTTGCACATT 57.336 38.095 0.00 0.00 0.00 2.71
1988 2026 3.880047 ATGCTAAACATGCTTGCACAT 57.120 38.095 6.66 0.00 37.70 3.21
1989 2027 4.987408 ATATGCTAAACATGCTTGCACA 57.013 36.364 6.66 0.00 40.06 4.57
1990 2028 6.304356 TCTATATGCTAAACATGCTTGCAC 57.696 37.500 6.66 0.00 40.06 4.57
1991 2029 6.711645 TCATCTATATGCTAAACATGCTTGCA 59.288 34.615 6.91 6.91 40.06 4.08
1992 2030 7.137490 TCATCTATATGCTAAACATGCTTGC 57.863 36.000 0.00 0.00 40.06 4.01
1993 2031 7.242079 GCTCATCTATATGCTAAACATGCTTG 58.758 38.462 0.00 0.00 40.06 4.01
1994 2032 6.373774 GGCTCATCTATATGCTAAACATGCTT 59.626 38.462 0.00 0.00 40.06 3.91
1995 2033 5.879223 GGCTCATCTATATGCTAAACATGCT 59.121 40.000 0.00 0.00 40.06 3.79
1996 2034 5.220548 CGGCTCATCTATATGCTAAACATGC 60.221 44.000 0.00 0.00 40.06 4.06
1997 2035 6.101997 TCGGCTCATCTATATGCTAAACATG 58.898 40.000 0.00 0.00 40.06 3.21
1998 2036 6.286240 TCGGCTCATCTATATGCTAAACAT 57.714 37.500 0.00 0.00 43.18 2.71
1999 2037 5.722021 TCGGCTCATCTATATGCTAAACA 57.278 39.130 0.00 0.00 32.76 2.83
2000 2038 6.423905 TGTTTCGGCTCATCTATATGCTAAAC 59.576 38.462 0.00 0.00 34.81 2.01
2001 2039 6.521162 TGTTTCGGCTCATCTATATGCTAAA 58.479 36.000 0.00 0.00 32.76 1.85
2002 2040 6.096673 TGTTTCGGCTCATCTATATGCTAA 57.903 37.500 0.00 0.00 32.76 3.09
2003 2041 5.722021 TGTTTCGGCTCATCTATATGCTA 57.278 39.130 0.00 0.00 32.76 3.49
2004 2042 4.607293 TGTTTCGGCTCATCTATATGCT 57.393 40.909 0.00 0.00 32.76 3.79
2005 2043 5.869753 AATGTTTCGGCTCATCTATATGC 57.130 39.130 0.00 0.00 32.76 3.14
2006 2044 6.036517 GGCTAATGTTTCGGCTCATCTATATG 59.963 42.308 0.00 0.00 0.00 1.78
2007 2045 6.109359 GGCTAATGTTTCGGCTCATCTATAT 58.891 40.000 0.00 0.00 0.00 0.86
2008 2046 5.479306 GGCTAATGTTTCGGCTCATCTATA 58.521 41.667 0.00 0.00 0.00 1.31
2009 2047 4.319177 GGCTAATGTTTCGGCTCATCTAT 58.681 43.478 0.00 0.00 0.00 1.98
2010 2048 3.728845 GGCTAATGTTTCGGCTCATCTA 58.271 45.455 0.00 0.00 0.00 1.98
2011 2049 2.565841 GGCTAATGTTTCGGCTCATCT 58.434 47.619 0.00 0.00 0.00 2.90
2012 2050 1.261619 CGGCTAATGTTTCGGCTCATC 59.738 52.381 0.00 0.00 0.00 2.92
2013 2051 1.134521 TCGGCTAATGTTTCGGCTCAT 60.135 47.619 0.00 0.00 0.00 2.90
2014 2052 0.248012 TCGGCTAATGTTTCGGCTCA 59.752 50.000 0.00 0.00 0.00 4.26
2015 2053 1.062148 GTTCGGCTAATGTTTCGGCTC 59.938 52.381 0.00 0.00 0.00 4.70
2016 2054 1.084289 GTTCGGCTAATGTTTCGGCT 58.916 50.000 0.00 0.00 0.00 5.52
2017 2055 0.800012 TGTTCGGCTAATGTTTCGGC 59.200 50.000 0.00 0.00 0.00 5.54
2018 2056 3.757745 ATTGTTCGGCTAATGTTTCGG 57.242 42.857 0.00 0.00 0.00 4.30
2019 2057 8.891928 CATATAAATTGTTCGGCTAATGTTTCG 58.108 33.333 0.00 0.00 0.00 3.46
2020 2058 9.944663 TCATATAAATTGTTCGGCTAATGTTTC 57.055 29.630 0.00 0.00 0.00 2.78
2022 2060 9.950680 CTTCATATAAATTGTTCGGCTAATGTT 57.049 29.630 0.00 0.00 0.00 2.71
2023 2061 9.120538 ACTTCATATAAATTGTTCGGCTAATGT 57.879 29.630 0.00 0.00 0.00 2.71
2026 2064 9.602568 TGTACTTCATATAAATTGTTCGGCTAA 57.397 29.630 0.00 0.00 0.00 3.09
2027 2065 9.037737 GTGTACTTCATATAAATTGTTCGGCTA 57.962 33.333 0.00 0.00 0.00 3.93
2028 2066 7.769044 AGTGTACTTCATATAAATTGTTCGGCT 59.231 33.333 0.00 0.00 0.00 5.52
2029 2067 7.916552 AGTGTACTTCATATAAATTGTTCGGC 58.083 34.615 0.00 0.00 0.00 5.54
2056 2094 9.995003 TGGTTTTATGCAATTCACTTCTTTATT 57.005 25.926 0.00 0.00 0.00 1.40
2057 2095 9.423061 GTGGTTTTATGCAATTCACTTCTTTAT 57.577 29.630 0.00 0.00 0.00 1.40
2058 2096 7.870445 GGTGGTTTTATGCAATTCACTTCTTTA 59.130 33.333 0.00 0.00 0.00 1.85
2059 2097 6.705825 GGTGGTTTTATGCAATTCACTTCTTT 59.294 34.615 0.00 0.00 0.00 2.52
2060 2098 6.183360 TGGTGGTTTTATGCAATTCACTTCTT 60.183 34.615 0.00 0.00 0.00 2.52
2063 2101 5.163364 TGTGGTGGTTTTATGCAATTCACTT 60.163 36.000 0.00 0.00 0.00 3.16
2075 2113 4.120946 AGCCCTAAATGTGGTGGTTTTA 57.879 40.909 0.00 0.00 0.00 1.52
2091 2129 1.683385 GTTTTCTGCAAGTGAAGCCCT 59.317 47.619 0.00 0.00 33.76 5.19
2434 2482 1.889829 ACAGACACTACACAGGAGCTC 59.110 52.381 4.71 4.71 0.00 4.09
2454 2502 3.220999 CTCCACGAAGTCCACGCCA 62.221 63.158 0.00 0.00 41.61 5.69
2458 2506 2.432628 CGCCTCCACGAAGTCCAC 60.433 66.667 0.00 0.00 41.61 4.02
2478 2526 4.516195 GAAGGCCGAGCTCCCGAC 62.516 72.222 8.47 0.00 0.00 4.79
2481 2529 2.124942 CTTGAAGGCCGAGCTCCC 60.125 66.667 8.47 4.33 0.00 4.30
2564 2613 2.887568 GCATCCACAGCGTCGAGG 60.888 66.667 0.00 0.00 0.00 4.63
2665 2716 2.683933 GAGCGAGGGGAAGTGGGA 60.684 66.667 0.00 0.00 0.00 4.37
2667 2718 3.382832 ACGAGCGAGGGGAAGTGG 61.383 66.667 0.00 0.00 0.00 4.00
2669 2720 4.070552 GCACGAGCGAGGGGAAGT 62.071 66.667 0.00 0.00 0.00 3.01
2779 2838 3.712881 GGTGCACCGTCGAACTGC 61.713 66.667 22.49 3.78 0.00 4.40
2815 2897 2.046292 GGGGAGGAAGAAGATGGAGAG 58.954 57.143 0.00 0.00 0.00 3.20
2821 2903 2.959421 AGACAGGGGAGGAAGAAGAT 57.041 50.000 0.00 0.00 0.00 2.40
2825 2907 2.541466 GAGAAAGACAGGGGAGGAAGA 58.459 52.381 0.00 0.00 0.00 2.87
2841 2949 3.711704 GAGAGAGAGAGAGAGAGGGAGAA 59.288 52.174 0.00 0.00 0.00 2.87
2846 2954 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
2888 3014 3.479269 CAGCTTCCGCGAACGTCC 61.479 66.667 8.23 0.00 42.32 4.79
2889 3015 3.479269 CCAGCTTCCGCGAACGTC 61.479 66.667 8.23 0.00 42.32 4.34
2890 3016 3.986006 TCCAGCTTCCGCGAACGT 61.986 61.111 8.23 0.00 42.32 3.99
2891 3017 3.479269 GTCCAGCTTCCGCGAACG 61.479 66.667 8.23 0.00 42.32 3.95
2892 3018 3.479269 CGTCCAGCTTCCGCGAAC 61.479 66.667 8.23 0.00 42.32 3.95
2893 3019 3.215597 TTCGTCCAGCTTCCGCGAA 62.216 57.895 8.23 7.72 42.32 4.70
2894 3020 3.626680 CTTCGTCCAGCTTCCGCGA 62.627 63.158 8.23 0.00 42.32 5.87
2897 3187 2.815647 GGCTTCGTCCAGCTTCCG 60.816 66.667 0.00 0.00 39.97 4.30
2901 3191 3.077556 ATCCGGCTTCGTCCAGCT 61.078 61.111 0.00 0.00 39.97 4.24
2930 3220 3.277142 TCTCCTGTGTACGAGCTCATA 57.723 47.619 15.40 0.00 0.00 2.15
2932 3222 1.813178 CTTCTCCTGTGTACGAGCTCA 59.187 52.381 15.40 0.00 0.00 4.26
2933 3223 1.133407 CCTTCTCCTGTGTACGAGCTC 59.867 57.143 2.73 2.73 0.00 4.09
2934 3224 1.178276 CCTTCTCCTGTGTACGAGCT 58.822 55.000 0.00 0.00 0.00 4.09
2936 3226 2.712709 TCTCCTTCTCCTGTGTACGAG 58.287 52.381 0.00 0.00 0.00 4.18
2937 3227 2.873094 TCTCCTTCTCCTGTGTACGA 57.127 50.000 0.00 0.00 0.00 3.43
2941 3231 4.027437 GGTATCTTCTCCTTCTCCTGTGT 58.973 47.826 0.00 0.00 0.00 3.72
2942 3232 4.285863 AGGTATCTTCTCCTTCTCCTGTG 58.714 47.826 0.00 0.00 0.00 3.66
2943 3233 4.618378 AGGTATCTTCTCCTTCTCCTGT 57.382 45.455 0.00 0.00 0.00 4.00
2944 3234 6.210584 GGATAAGGTATCTTCTCCTTCTCCTG 59.789 46.154 11.93 0.00 45.51 3.86
2945 3235 6.319715 GGATAAGGTATCTTCTCCTTCTCCT 58.680 44.000 11.93 0.00 45.51 3.69
2946 3236 5.482526 GGGATAAGGTATCTTCTCCTTCTCC 59.517 48.000 17.20 15.42 46.87 3.71
2947 3237 6.319715 AGGGATAAGGTATCTTCTCCTTCTC 58.680 44.000 17.20 3.79 42.55 2.87
2970 3298 3.425659 CCTTCCTCCTCCCTTTTTCAAG 58.574 50.000 0.00 0.00 0.00 3.02
2971 3299 2.110011 CCCTTCCTCCTCCCTTTTTCAA 59.890 50.000 0.00 0.00 0.00 2.69
2972 3300 1.710809 CCCTTCCTCCTCCCTTTTTCA 59.289 52.381 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.