Multiple sequence alignment - TraesCS2A01G515800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G515800 chr2A 100.000 3019 0 0 1 3019 739801720 739804738 0.000000e+00 5576.0
1 TraesCS2A01G515800 chr2A 95.010 1984 80 12 442 2407 752883172 752881190 0.000000e+00 3097.0
2 TraesCS2A01G515800 chr2A 97.557 614 14 1 2407 3019 509061633 509061020 0.000000e+00 1050.0
3 TraesCS2A01G515800 chr2A 78.820 373 70 6 45 417 739850539 739850902 3.010000e-60 243.0
4 TraesCS2A01G515800 chr7A 95.385 1972 85 5 440 2407 658706223 658704254 0.000000e+00 3133.0
5 TraesCS2A01G515800 chr5A 95.005 1982 83 3 441 2407 640389062 640387082 0.000000e+00 3097.0
6 TraesCS2A01G515800 chr5A 94.708 1984 81 9 442 2407 546845988 546847965 0.000000e+00 3061.0
7 TraesCS2A01G515800 chr5A 89.619 2023 114 49 442 2407 78443874 78441891 0.000000e+00 2484.0
8 TraesCS2A01G515800 chr5A 90.123 324 27 4 442 761 697642232 697641910 1.670000e-112 416.0
9 TraesCS2A01G515800 chr5A 88.657 335 24 11 441 774 546853647 546853326 2.180000e-106 396.0
10 TraesCS2A01G515800 chr1A 94.869 1988 83 15 438 2407 13813938 13811952 0.000000e+00 3088.0
11 TraesCS2A01G515800 chr1A 94.864 1986 80 15 442 2407 34337446 34339429 0.000000e+00 3083.0
12 TraesCS2A01G515800 chr1A 94.708 1984 86 5 442 2407 566074874 566072892 0.000000e+00 3064.0
13 TraesCS2A01G515800 chr1A 98.039 612 10 1 2408 3019 90974315 90974924 0.000000e+00 1062.0
14 TraesCS2A01G515800 chr1A 97.712 612 12 1 2408 3019 339317592 339318201 0.000000e+00 1051.0
15 TraesCS2A01G515800 chr1A 97.712 612 11 1 2408 3019 90794903 90794295 0.000000e+00 1050.0
16 TraesCS2A01G515800 chr1A 97.549 612 15 0 2408 3019 90492082 90492693 0.000000e+00 1048.0
17 TraesCS2A01G515800 chr1A 97.549 612 13 1 2408 3019 51844748 51845357 0.000000e+00 1046.0
18 TraesCS2A01G515800 chr1A 97.386 612 16 0 2408 3019 55036927 55036316 0.000000e+00 1042.0
19 TraesCS2A01G515800 chr4A 94.758 1984 81 15 442 2407 628881991 628883969 0.000000e+00 3066.0
20 TraesCS2A01G515800 chr4A 97.386 612 14 1 2408 3019 367940821 367940212 0.000000e+00 1040.0
21 TraesCS2A01G515800 chr6A 94.478 1992 78 15 442 2407 71102124 71100139 0.000000e+00 3040.0
22 TraesCS2A01G515800 chr6A 97.553 613 15 0 2407 3019 320582439 320581827 0.000000e+00 1050.0
23 TraesCS2A01G515800 chr2B 87.453 805 68 21 442 1218 629733649 629732850 0.000000e+00 896.0
24 TraesCS2A01G515800 chr2B 78.667 375 73 4 45 417 741718171 741718540 3.010000e-60 243.0
25 TraesCS2A01G515800 chr2B 80.065 306 45 8 45 336 741475542 741475845 2.360000e-51 213.0
26 TraesCS2A01G515800 chr2D 89.563 412 34 2 30 441 608267640 608268042 5.770000e-142 514.0
27 TraesCS2A01G515800 chr2D 78.820 373 70 5 45 417 608398596 608398959 3.010000e-60 243.0
28 TraesCS2A01G515800 chr3D 91.692 325 22 4 441 761 52850152 52849829 2.140000e-121 446.0
29 TraesCS2A01G515800 chr3D 78.261 161 31 4 210 368 416562549 416562707 1.920000e-17 100.0
30 TraesCS2A01G515800 chr3A 78.750 160 32 2 210 368 534161740 534161582 4.120000e-19 106.0
31 TraesCS2A01G515800 chr6B 79.856 139 28 0 259 397 506026749 506026887 5.320000e-18 102.0
32 TraesCS2A01G515800 chr5B 77.483 151 32 2 248 397 38610864 38610715 4.150000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G515800 chr2A 739801720 739804738 3018 False 5576 5576 100.000 1 3019 1 chr2A.!!$F1 3018
1 TraesCS2A01G515800 chr2A 752881190 752883172 1982 True 3097 3097 95.010 442 2407 1 chr2A.!!$R2 1965
2 TraesCS2A01G515800 chr2A 509061020 509061633 613 True 1050 1050 97.557 2407 3019 1 chr2A.!!$R1 612
3 TraesCS2A01G515800 chr7A 658704254 658706223 1969 True 3133 3133 95.385 440 2407 1 chr7A.!!$R1 1967
4 TraesCS2A01G515800 chr5A 640387082 640389062 1980 True 3097 3097 95.005 441 2407 1 chr5A.!!$R3 1966
5 TraesCS2A01G515800 chr5A 546845988 546847965 1977 False 3061 3061 94.708 442 2407 1 chr5A.!!$F1 1965
6 TraesCS2A01G515800 chr5A 78441891 78443874 1983 True 2484 2484 89.619 442 2407 1 chr5A.!!$R1 1965
7 TraesCS2A01G515800 chr1A 13811952 13813938 1986 True 3088 3088 94.869 438 2407 1 chr1A.!!$R1 1969
8 TraesCS2A01G515800 chr1A 34337446 34339429 1983 False 3083 3083 94.864 442 2407 1 chr1A.!!$F1 1965
9 TraesCS2A01G515800 chr1A 566072892 566074874 1982 True 3064 3064 94.708 442 2407 1 chr1A.!!$R4 1965
10 TraesCS2A01G515800 chr1A 90974315 90974924 609 False 1062 1062 98.039 2408 3019 1 chr1A.!!$F4 611
11 TraesCS2A01G515800 chr1A 339317592 339318201 609 False 1051 1051 97.712 2408 3019 1 chr1A.!!$F5 611
12 TraesCS2A01G515800 chr1A 90794295 90794903 608 True 1050 1050 97.712 2408 3019 1 chr1A.!!$R3 611
13 TraesCS2A01G515800 chr1A 90492082 90492693 611 False 1048 1048 97.549 2408 3019 1 chr1A.!!$F3 611
14 TraesCS2A01G515800 chr1A 51844748 51845357 609 False 1046 1046 97.549 2408 3019 1 chr1A.!!$F2 611
15 TraesCS2A01G515800 chr1A 55036316 55036927 611 True 1042 1042 97.386 2408 3019 1 chr1A.!!$R2 611
16 TraesCS2A01G515800 chr4A 628881991 628883969 1978 False 3066 3066 94.758 442 2407 1 chr4A.!!$F1 1965
17 TraesCS2A01G515800 chr4A 367940212 367940821 609 True 1040 1040 97.386 2408 3019 1 chr4A.!!$R1 611
18 TraesCS2A01G515800 chr6A 71100139 71102124 1985 True 3040 3040 94.478 442 2407 1 chr6A.!!$R1 1965
19 TraesCS2A01G515800 chr6A 320581827 320582439 612 True 1050 1050 97.553 2407 3019 1 chr6A.!!$R2 612
20 TraesCS2A01G515800 chr2B 629732850 629733649 799 True 896 896 87.453 442 1218 1 chr2B.!!$R1 776

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.040058 TACCCCTAGGACGCTTGACA 59.960 55.0 11.48 0.0 36.73 3.58 F
199 200 0.109597 CATGCAGGCTTCGTTGGTTC 60.110 55.0 0.00 0.0 0.00 3.62 F
252 253 0.254462 AGGCTGCCTTCTTTAGCTCC 59.746 55.0 17.22 0.0 37.58 4.70 F
265 266 0.326522 TAGCTCCCTCTGGATTGGCA 60.327 55.0 0.00 0.0 40.80 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1812 2.867109 TCTTTGCCTTCTCCTCAAGG 57.133 50.000 0.00 0.00 45.35 3.61 R
1870 1916 3.114606 TGTATCTCCTTCATGGCCTTCA 58.885 45.455 3.32 0.00 35.26 3.02 R
1932 1981 4.034163 CAGTAGCTCAGAAATGACATGCTG 59.966 45.833 10.75 10.75 0.00 4.41 R
2271 2344 6.566197 AAAAAGACAGATAGAAACTGCAGG 57.434 37.500 19.93 0.00 38.74 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.494918 CCAGGTCCTACTTCGGCG 59.505 66.667 0.00 0.00 0.00 6.46
18 19 2.494918 CAGGTCCTACTTCGGCGG 59.505 66.667 7.21 0.00 0.00 6.13
19 20 2.050350 CAGGTCCTACTTCGGCGGA 61.050 63.158 7.21 0.00 0.00 5.54
20 21 2.050934 AGGTCCTACTTCGGCGGAC 61.051 63.158 7.21 5.01 45.02 4.79
21 22 2.493501 GTCCTACTTCGGCGGACC 59.506 66.667 7.21 0.00 41.00 4.46
22 23 2.050934 GTCCTACTTCGGCGGACCT 61.051 63.158 7.21 0.00 41.00 3.85
23 24 1.751927 TCCTACTTCGGCGGACCTC 60.752 63.158 7.21 0.00 0.00 3.85
24 25 1.753463 CCTACTTCGGCGGACCTCT 60.753 63.158 7.21 0.00 0.00 3.69
25 26 0.465097 CCTACTTCGGCGGACCTCTA 60.465 60.000 7.21 0.00 0.00 2.43
26 27 0.662085 CTACTTCGGCGGACCTCTAC 59.338 60.000 7.21 0.00 0.00 2.59
27 28 0.749454 TACTTCGGCGGACCTCTACC 60.749 60.000 7.21 0.00 0.00 3.18
28 29 2.036098 TTCGGCGGACCTCTACCA 59.964 61.111 7.21 0.00 0.00 3.25
29 30 1.601419 CTTCGGCGGACCTCTACCAA 61.601 60.000 7.21 0.00 0.00 3.67
30 31 1.601419 TTCGGCGGACCTCTACCAAG 61.601 60.000 7.21 0.00 0.00 3.61
31 32 2.901042 GGCGGACCTCTACCAAGG 59.099 66.667 0.00 0.00 42.55 3.61
32 33 2.187163 GCGGACCTCTACCAAGGC 59.813 66.667 0.00 0.00 40.34 4.35
33 34 2.359967 GCGGACCTCTACCAAGGCT 61.360 63.158 0.00 0.00 40.34 4.58
34 35 1.517832 CGGACCTCTACCAAGGCTG 59.482 63.158 0.00 0.00 40.34 4.85
35 36 0.970937 CGGACCTCTACCAAGGCTGA 60.971 60.000 0.00 0.00 40.34 4.26
36 37 0.827368 GGACCTCTACCAAGGCTGAG 59.173 60.000 0.00 0.00 40.34 3.35
37 38 0.176910 GACCTCTACCAAGGCTGAGC 59.823 60.000 0.00 0.00 40.34 4.26
47 48 4.032653 GGCTGAGCCTCACTCTCT 57.967 61.111 17.96 0.00 46.69 3.10
48 49 2.285824 GGCTGAGCCTCACTCTCTT 58.714 57.895 17.96 0.00 46.69 2.85
49 50 0.175531 GGCTGAGCCTCACTCTCTTC 59.824 60.000 17.96 0.00 46.69 2.87
50 51 0.894141 GCTGAGCCTCACTCTCTTCA 59.106 55.000 0.00 0.00 46.41 3.02
51 52 1.135024 GCTGAGCCTCACTCTCTTCAG 60.135 57.143 0.00 0.00 46.41 3.02
52 53 2.445427 CTGAGCCTCACTCTCTTCAGA 58.555 52.381 0.00 0.00 46.41 3.27
59 60 4.810730 CTCTCTTCAGAGCCTGCG 57.189 61.111 0.00 0.00 40.00 5.18
60 61 1.519013 CTCTCTTCAGAGCCTGCGC 60.519 63.158 0.00 0.00 40.00 6.09
61 62 2.511145 CTCTTCAGAGCCTGCGCC 60.511 66.667 4.18 0.00 35.13 6.53
62 63 3.306595 CTCTTCAGAGCCTGCGCCA 62.307 63.158 4.18 0.00 35.13 5.69
63 64 3.123620 CTTCAGAGCCTGCGCCAC 61.124 66.667 4.18 0.00 34.57 5.01
82 83 2.187163 GCCTTCGGCCTCTACCAC 59.813 66.667 0.00 0.00 44.06 4.16
83 84 2.901042 CCTTCGGCCTCTACCACC 59.099 66.667 0.00 0.00 0.00 4.61
84 85 1.686110 CCTTCGGCCTCTACCACCT 60.686 63.158 0.00 0.00 0.00 4.00
85 86 1.677637 CCTTCGGCCTCTACCACCTC 61.678 65.000 0.00 0.00 0.00 3.85
86 87 1.677637 CTTCGGCCTCTACCACCTCC 61.678 65.000 0.00 0.00 0.00 4.30
87 88 3.155167 CGGCCTCTACCACCTCCC 61.155 72.222 0.00 0.00 0.00 4.30
88 89 2.768769 GGCCTCTACCACCTCCCC 60.769 72.222 0.00 0.00 0.00 4.81
89 90 2.369001 GCCTCTACCACCTCCCCT 59.631 66.667 0.00 0.00 0.00 4.79
90 91 2.066999 GCCTCTACCACCTCCCCTG 61.067 68.421 0.00 0.00 0.00 4.45
91 92 2.066999 CCTCTACCACCTCCCCTGC 61.067 68.421 0.00 0.00 0.00 4.85
92 93 1.306141 CTCTACCACCTCCCCTGCA 60.306 63.158 0.00 0.00 0.00 4.41
93 94 1.306141 TCTACCACCTCCCCTGCAG 60.306 63.158 6.78 6.78 0.00 4.41
94 95 2.285368 TACCACCTCCCCTGCAGG 60.285 66.667 26.87 26.87 37.03 4.85
95 96 3.188355 TACCACCTCCCCTGCAGGT 62.188 63.158 30.63 13.37 45.89 4.00
96 97 1.817572 TACCACCTCCCCTGCAGGTA 61.818 60.000 30.63 17.52 42.85 3.08
97 98 2.370445 CCACCTCCCCTGCAGGTAG 61.370 68.421 30.63 24.95 42.85 3.18
98 99 2.041265 ACCTCCCCTGCAGGTAGG 59.959 66.667 34.28 34.28 42.91 3.18
99 100 2.041265 CCTCCCCTGCAGGTAGGT 59.959 66.667 30.56 0.00 36.02 3.08
100 101 1.313475 CCTCCCCTGCAGGTAGGTA 59.687 63.158 30.56 16.68 36.02 3.08
101 102 0.326238 CCTCCCCTGCAGGTAGGTAA 60.326 60.000 30.56 13.73 36.02 2.85
102 103 1.695989 CCTCCCCTGCAGGTAGGTAAT 60.696 57.143 30.56 0.00 36.02 1.89
103 104 2.127708 CTCCCCTGCAGGTAGGTAATT 58.872 52.381 30.63 0.00 36.02 1.40
104 105 3.314693 CTCCCCTGCAGGTAGGTAATTA 58.685 50.000 30.63 8.83 36.02 1.40
105 106 3.043418 TCCCCTGCAGGTAGGTAATTAC 58.957 50.000 30.63 7.09 36.02 1.89
106 107 2.105993 CCCCTGCAGGTAGGTAATTACC 59.894 54.545 30.63 24.71 46.82 2.85
116 117 2.827800 GGTAATTACCCCTAGGACGC 57.172 55.000 22.15 0.00 40.53 5.19
117 118 2.323599 GGTAATTACCCCTAGGACGCT 58.676 52.381 22.15 0.00 40.53 5.07
118 119 2.702478 GGTAATTACCCCTAGGACGCTT 59.298 50.000 22.15 0.00 40.53 4.68
119 120 3.493873 GGTAATTACCCCTAGGACGCTTG 60.494 52.174 22.15 0.00 40.53 4.01
120 121 2.170012 ATTACCCCTAGGACGCTTGA 57.830 50.000 11.48 0.00 36.73 3.02
121 122 1.188863 TTACCCCTAGGACGCTTGAC 58.811 55.000 11.48 0.00 36.73 3.18
122 123 0.040058 TACCCCTAGGACGCTTGACA 59.960 55.000 11.48 0.00 36.73 3.58
123 124 0.617820 ACCCCTAGGACGCTTGACAT 60.618 55.000 11.48 0.00 36.73 3.06
124 125 0.541863 CCCCTAGGACGCTTGACATT 59.458 55.000 11.48 0.00 33.47 2.71
125 126 1.473434 CCCCTAGGACGCTTGACATTC 60.473 57.143 11.48 0.00 33.47 2.67
126 127 1.473434 CCCTAGGACGCTTGACATTCC 60.473 57.143 11.48 0.00 0.00 3.01
127 128 1.560923 CTAGGACGCTTGACATTCCG 58.439 55.000 0.00 0.00 32.97 4.30
128 129 1.134367 CTAGGACGCTTGACATTCCGA 59.866 52.381 0.00 0.00 32.97 4.55
129 130 0.537188 AGGACGCTTGACATTCCGAT 59.463 50.000 0.00 0.00 32.97 4.18
130 131 0.931005 GGACGCTTGACATTCCGATC 59.069 55.000 0.00 0.00 0.00 3.69
131 132 0.572590 GACGCTTGACATTCCGATCG 59.427 55.000 8.51 8.51 0.00 3.69
132 133 0.172578 ACGCTTGACATTCCGATCGA 59.827 50.000 18.66 0.00 0.00 3.59
133 134 0.848942 CGCTTGACATTCCGATCGAG 59.151 55.000 18.66 6.99 0.00 4.04
134 135 1.799181 CGCTTGACATTCCGATCGAGT 60.799 52.381 18.66 9.39 0.00 4.18
135 136 2.271800 GCTTGACATTCCGATCGAGTT 58.728 47.619 18.66 0.00 0.00 3.01
136 137 2.673368 GCTTGACATTCCGATCGAGTTT 59.327 45.455 18.66 0.00 0.00 2.66
137 138 3.242123 GCTTGACATTCCGATCGAGTTTC 60.242 47.826 18.66 6.71 0.00 2.78
138 139 3.868757 TGACATTCCGATCGAGTTTCT 57.131 42.857 18.66 0.00 0.00 2.52
139 140 3.511699 TGACATTCCGATCGAGTTTCTG 58.488 45.455 18.66 7.51 0.00 3.02
140 141 3.192633 TGACATTCCGATCGAGTTTCTGA 59.807 43.478 18.66 0.00 0.00 3.27
141 142 3.512680 ACATTCCGATCGAGTTTCTGAC 58.487 45.455 18.66 0.00 0.00 3.51
142 143 3.056821 ACATTCCGATCGAGTTTCTGACA 60.057 43.478 18.66 0.00 0.00 3.58
143 144 2.921634 TCCGATCGAGTTTCTGACAG 57.078 50.000 18.66 0.00 0.00 3.51
144 145 2.433436 TCCGATCGAGTTTCTGACAGA 58.567 47.619 18.66 0.00 0.00 3.41
145 146 2.161808 TCCGATCGAGTTTCTGACAGAC 59.838 50.000 18.66 0.00 0.00 3.51
146 147 2.520979 CGATCGAGTTTCTGACAGACC 58.479 52.381 10.26 0.00 0.00 3.85
147 148 2.095212 CGATCGAGTTTCTGACAGACCA 60.095 50.000 10.26 0.00 0.00 4.02
148 149 3.611766 CGATCGAGTTTCTGACAGACCAA 60.612 47.826 10.26 0.00 0.00 3.67
149 150 4.499183 GATCGAGTTTCTGACAGACCAAT 58.501 43.478 4.15 0.00 0.00 3.16
150 151 3.914312 TCGAGTTTCTGACAGACCAATC 58.086 45.455 4.15 3.11 0.00 2.67
151 152 2.663602 CGAGTTTCTGACAGACCAATCG 59.336 50.000 15.42 15.42 0.00 3.34
152 153 3.611766 CGAGTTTCTGACAGACCAATCGA 60.612 47.826 21.03 0.00 30.93 3.59
153 154 4.499183 GAGTTTCTGACAGACCAATCGAT 58.501 43.478 4.15 0.00 0.00 3.59
154 155 4.499183 AGTTTCTGACAGACCAATCGATC 58.501 43.478 4.15 0.00 0.00 3.69
155 156 4.021104 AGTTTCTGACAGACCAATCGATCA 60.021 41.667 4.15 0.00 0.00 2.92
156 157 3.510388 TCTGACAGACCAATCGATCAC 57.490 47.619 0.00 0.00 0.00 3.06
157 158 2.159379 TCTGACAGACCAATCGATCACG 60.159 50.000 0.00 0.00 41.26 4.35
158 159 0.924090 GACAGACCAATCGATCACGC 59.076 55.000 0.00 0.00 39.58 5.34
159 160 0.802222 ACAGACCAATCGATCACGCG 60.802 55.000 3.53 3.53 39.58 6.01
160 161 1.878522 AGACCAATCGATCACGCGC 60.879 57.895 5.73 0.00 39.58 6.86
161 162 2.871427 GACCAATCGATCACGCGCC 61.871 63.158 5.73 0.00 39.58 6.53
162 163 2.586079 CCAATCGATCACGCGCCT 60.586 61.111 5.73 0.00 39.58 5.52
163 164 1.299850 CCAATCGATCACGCGCCTA 60.300 57.895 5.73 0.00 39.58 3.93
164 165 0.667487 CCAATCGATCACGCGCCTAT 60.667 55.000 5.73 0.00 39.58 2.57
165 166 0.710567 CAATCGATCACGCGCCTATC 59.289 55.000 5.73 5.90 39.58 2.08
166 167 0.598562 AATCGATCACGCGCCTATCT 59.401 50.000 5.73 0.00 39.58 1.98
167 168 0.598562 ATCGATCACGCGCCTATCTT 59.401 50.000 5.73 0.00 39.58 2.40
168 169 0.317854 TCGATCACGCGCCTATCTTG 60.318 55.000 5.73 0.00 39.58 3.02
169 170 0.595053 CGATCACGCGCCTATCTTGT 60.595 55.000 5.73 0.00 0.00 3.16
170 171 1.571919 GATCACGCGCCTATCTTGTT 58.428 50.000 5.73 0.00 0.00 2.83
171 172 1.523095 GATCACGCGCCTATCTTGTTC 59.477 52.381 5.73 0.00 0.00 3.18
172 173 0.800683 TCACGCGCCTATCTTGTTCG 60.801 55.000 5.73 0.00 0.00 3.95
173 174 1.076533 CACGCGCCTATCTTGTTCGT 61.077 55.000 5.73 0.00 0.00 3.85
174 175 0.801067 ACGCGCCTATCTTGTTCGTC 60.801 55.000 5.73 0.00 0.00 4.20
175 176 1.798368 CGCGCCTATCTTGTTCGTCG 61.798 60.000 0.00 0.00 0.00 5.12
176 177 0.801067 GCGCCTATCTTGTTCGTCGT 60.801 55.000 0.00 0.00 0.00 4.34
177 178 1.189403 CGCCTATCTTGTTCGTCGTC 58.811 55.000 0.00 0.00 0.00 4.20
178 179 1.202154 CGCCTATCTTGTTCGTCGTCT 60.202 52.381 0.00 0.00 0.00 4.18
179 180 2.186076 GCCTATCTTGTTCGTCGTCTG 58.814 52.381 0.00 0.00 0.00 3.51
180 181 2.186076 CCTATCTTGTTCGTCGTCTGC 58.814 52.381 0.00 0.00 0.00 4.26
181 182 2.415491 CCTATCTTGTTCGTCGTCTGCA 60.415 50.000 0.00 0.00 0.00 4.41
182 183 2.370281 ATCTTGTTCGTCGTCTGCAT 57.630 45.000 0.00 0.00 0.00 3.96
183 184 1.418373 TCTTGTTCGTCGTCTGCATG 58.582 50.000 0.00 0.00 0.00 4.06
184 185 0.179240 CTTGTTCGTCGTCTGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
185 186 0.878086 TTGTTCGTCGTCTGCATGCA 60.878 50.000 21.29 21.29 0.00 3.96
186 187 1.284297 TGTTCGTCGTCTGCATGCAG 61.284 55.000 36.80 36.80 44.86 4.41
187 188 1.737735 TTCGTCGTCTGCATGCAGG 60.738 57.895 39.72 27.67 43.75 4.85
188 189 3.857854 CGTCGTCTGCATGCAGGC 61.858 66.667 39.72 38.28 44.48 4.85
189 190 2.435586 GTCGTCTGCATGCAGGCT 60.436 61.111 40.34 0.00 45.63 4.58
190 191 2.037136 GTCGTCTGCATGCAGGCTT 61.037 57.895 40.34 0.00 45.63 4.35
191 192 1.742880 TCGTCTGCATGCAGGCTTC 60.743 57.895 40.34 27.33 45.63 3.86
192 193 2.789917 GTCTGCATGCAGGCTTCG 59.210 61.111 38.45 19.17 44.53 3.79
193 194 2.037136 GTCTGCATGCAGGCTTCGT 61.037 57.895 38.45 0.00 44.53 3.85
194 195 1.302752 TCTGCATGCAGGCTTCGTT 60.303 52.632 39.72 0.00 43.75 3.85
195 196 1.154093 CTGCATGCAGGCTTCGTTG 60.154 57.895 35.39 11.39 40.17 4.10
196 197 2.180017 GCATGCAGGCTTCGTTGG 59.820 61.111 17.57 0.00 0.00 3.77
197 198 2.629656 GCATGCAGGCTTCGTTGGT 61.630 57.895 17.57 0.00 0.00 3.67
198 199 1.959085 CATGCAGGCTTCGTTGGTT 59.041 52.632 0.00 0.00 0.00 3.67
199 200 0.109597 CATGCAGGCTTCGTTGGTTC 60.110 55.000 0.00 0.00 0.00 3.62
200 201 1.577328 ATGCAGGCTTCGTTGGTTCG 61.577 55.000 0.00 0.00 0.00 3.95
201 202 2.966309 GCAGGCTTCGTTGGTTCGG 61.966 63.158 0.00 0.00 0.00 4.30
202 203 2.668550 AGGCTTCGTTGGTTCGGC 60.669 61.111 0.00 0.00 0.00 5.54
203 204 4.084888 GGCTTCGTTGGTTCGGCG 62.085 66.667 0.00 0.00 0.00 6.46
204 205 4.084888 GCTTCGTTGGTTCGGCGG 62.085 66.667 7.21 0.00 0.00 6.13
205 206 2.663852 CTTCGTTGGTTCGGCGGT 60.664 61.111 7.21 0.00 0.00 5.68
206 207 2.950172 CTTCGTTGGTTCGGCGGTG 61.950 63.158 7.21 0.00 0.00 4.94
207 208 3.736732 TTCGTTGGTTCGGCGGTGT 62.737 57.895 7.21 0.00 0.00 4.16
208 209 4.007940 CGTTGGTTCGGCGGTGTG 62.008 66.667 7.21 0.00 0.00 3.82
209 210 4.322385 GTTGGTTCGGCGGTGTGC 62.322 66.667 7.21 0.00 45.38 4.57
219 220 4.354212 CGGTGTGCGTGCGTTGAG 62.354 66.667 0.00 0.00 0.00 3.02
229 230 2.357034 GCGTTGAGCTGACGGGAA 60.357 61.111 17.79 0.00 44.04 3.97
230 231 2.668280 GCGTTGAGCTGACGGGAAC 61.668 63.158 17.79 1.43 44.04 3.62
243 244 3.686760 GGAACCAAGGCTGCCTTC 58.313 61.111 30.24 19.15 42.67 3.46
244 245 1.075659 GGAACCAAGGCTGCCTTCT 59.924 57.895 30.24 17.67 42.67 2.85
245 246 0.540597 GGAACCAAGGCTGCCTTCTT 60.541 55.000 30.24 22.75 42.67 2.52
246 247 1.332195 GAACCAAGGCTGCCTTCTTT 58.668 50.000 30.24 23.99 42.67 2.52
247 248 2.514803 GAACCAAGGCTGCCTTCTTTA 58.485 47.619 30.24 0.00 42.67 1.85
248 249 2.206576 ACCAAGGCTGCCTTCTTTAG 57.793 50.000 30.24 18.36 42.67 1.85
249 250 0.813821 CCAAGGCTGCCTTCTTTAGC 59.186 55.000 30.24 0.00 42.67 3.09
250 251 1.615384 CCAAGGCTGCCTTCTTTAGCT 60.615 52.381 30.24 5.08 42.67 3.32
251 252 1.742268 CAAGGCTGCCTTCTTTAGCTC 59.258 52.381 30.24 0.00 42.67 4.09
252 253 0.254462 AGGCTGCCTTCTTTAGCTCC 59.746 55.000 17.22 0.00 37.58 4.70
253 254 0.749818 GGCTGCCTTCTTTAGCTCCC 60.750 60.000 12.43 0.00 37.58 4.30
254 255 0.254462 GCTGCCTTCTTTAGCTCCCT 59.746 55.000 0.00 0.00 34.70 4.20
255 256 1.745484 GCTGCCTTCTTTAGCTCCCTC 60.745 57.143 0.00 0.00 34.70 4.30
256 257 1.836802 CTGCCTTCTTTAGCTCCCTCT 59.163 52.381 0.00 0.00 0.00 3.69
257 258 1.556911 TGCCTTCTTTAGCTCCCTCTG 59.443 52.381 0.00 0.00 0.00 3.35
258 259 1.134250 GCCTTCTTTAGCTCCCTCTGG 60.134 57.143 0.00 0.00 0.00 3.86
259 260 2.472029 CCTTCTTTAGCTCCCTCTGGA 58.528 52.381 0.00 0.00 38.75 3.86
260 261 3.044894 CCTTCTTTAGCTCCCTCTGGAT 58.955 50.000 0.00 0.00 40.80 3.41
261 262 3.457749 CCTTCTTTAGCTCCCTCTGGATT 59.542 47.826 0.00 0.00 40.80 3.01
262 263 4.450053 CTTCTTTAGCTCCCTCTGGATTG 58.550 47.826 0.00 0.00 40.80 2.67
263 264 2.774234 TCTTTAGCTCCCTCTGGATTGG 59.226 50.000 0.00 0.00 40.80 3.16
264 265 0.839946 TTAGCTCCCTCTGGATTGGC 59.160 55.000 0.00 0.00 40.80 4.52
265 266 0.326522 TAGCTCCCTCTGGATTGGCA 60.327 55.000 0.00 0.00 40.80 4.92
266 267 0.992431 AGCTCCCTCTGGATTGGCAT 60.992 55.000 0.00 0.00 40.80 4.40
267 268 0.536915 GCTCCCTCTGGATTGGCATC 60.537 60.000 0.00 0.00 40.80 3.91
281 282 3.200593 CATCCTCTGCTGCACCGC 61.201 66.667 0.00 0.00 0.00 5.68
282 283 3.709633 ATCCTCTGCTGCACCGCA 61.710 61.111 0.00 0.27 38.40 5.69
283 284 3.040206 ATCCTCTGCTGCACCGCAT 62.040 57.895 0.00 0.00 39.52 4.73
284 285 2.937379 ATCCTCTGCTGCACCGCATC 62.937 60.000 0.00 0.00 39.52 3.91
285 286 3.200593 CTCTGCTGCACCGCATCC 61.201 66.667 0.00 0.00 39.52 3.51
286 287 4.783621 TCTGCTGCACCGCATCCC 62.784 66.667 0.00 0.00 39.52 3.85
348 349 4.308458 CACCGGGTGAGCCGTGAA 62.308 66.667 22.77 0.00 35.23 3.18
349 350 4.309950 ACCGGGTGAGCCGTGAAC 62.310 66.667 22.36 0.00 34.97 3.18
350 351 4.003788 CCGGGTGAGCCGTGAACT 62.004 66.667 22.36 0.00 34.97 3.01
351 352 2.738521 CGGGTGAGCCGTGAACTG 60.739 66.667 15.93 0.00 34.97 3.16
352 353 2.358737 GGGTGAGCCGTGAACTGG 60.359 66.667 0.00 0.00 34.97 4.00
359 360 3.322466 CCGTGAACTGGCCTCCCT 61.322 66.667 3.32 0.00 0.00 4.20
360 361 2.266055 CGTGAACTGGCCTCCCTC 59.734 66.667 3.32 0.00 0.00 4.30
361 362 2.266055 GTGAACTGGCCTCCCTCG 59.734 66.667 3.32 0.00 0.00 4.63
362 363 3.706373 TGAACTGGCCTCCCTCGC 61.706 66.667 3.32 0.00 0.00 5.03
363 364 4.821589 GAACTGGCCTCCCTCGCG 62.822 72.222 3.32 0.00 0.00 5.87
366 367 4.821589 CTGGCCTCCCTCGCGTTC 62.822 72.222 5.77 0.00 0.00 3.95
371 372 4.421479 CTCCCTCGCGTTCGTGCT 62.421 66.667 5.77 0.00 36.96 4.40
372 373 4.415332 TCCCTCGCGTTCGTGCTC 62.415 66.667 5.77 0.00 36.96 4.26
373 374 4.421479 CCCTCGCGTTCGTGCTCT 62.421 66.667 5.77 0.00 36.96 4.09
374 375 2.876645 CCTCGCGTTCGTGCTCTC 60.877 66.667 5.77 0.00 36.96 3.20
375 376 2.876645 CTCGCGTTCGTGCTCTCC 60.877 66.667 5.77 0.00 36.96 3.71
376 377 3.610791 CTCGCGTTCGTGCTCTCCA 62.611 63.158 5.77 0.00 36.96 3.86
377 378 3.470567 CGCGTTCGTGCTCTCCAC 61.471 66.667 0.00 0.00 41.15 4.02
378 379 3.112709 GCGTTCGTGCTCTCCACC 61.113 66.667 0.00 0.00 41.53 4.61
379 380 2.805353 CGTTCGTGCTCTCCACCG 60.805 66.667 0.00 0.00 41.53 4.94
380 381 3.112709 GTTCGTGCTCTCCACCGC 61.113 66.667 0.00 0.00 41.53 5.68
381 382 4.373116 TTCGTGCTCTCCACCGCC 62.373 66.667 0.00 0.00 41.53 6.13
405 406 1.501741 CAGCATGTACAACGGCACC 59.498 57.895 16.61 0.00 0.00 5.01
406 407 2.032634 AGCATGTACAACGGCACCG 61.033 57.895 16.61 7.71 46.03 4.94
407 408 2.478746 CATGTACAACGGCACCGC 59.521 61.111 9.43 0.00 44.19 5.68
408 409 2.744709 ATGTACAACGGCACCGCC 60.745 61.111 9.43 0.00 46.75 6.13
417 418 3.400054 GGCACCGCCTACCTCCTT 61.400 66.667 0.00 0.00 46.69 3.36
418 419 2.187163 GCACCGCCTACCTCCTTC 59.813 66.667 0.00 0.00 0.00 3.46
419 420 2.494918 CACCGCCTACCTCCTTCG 59.505 66.667 0.00 0.00 0.00 3.79
420 421 2.036890 ACCGCCTACCTCCTTCGT 59.963 61.111 0.00 0.00 0.00 3.85
421 422 2.348888 ACCGCCTACCTCCTTCGTG 61.349 63.158 0.00 0.00 0.00 4.35
422 423 2.202756 CGCCTACCTCCTTCGTGC 60.203 66.667 0.00 0.00 0.00 5.34
423 424 2.978824 GCCTACCTCCTTCGTGCA 59.021 61.111 0.00 0.00 0.00 4.57
424 425 1.153549 GCCTACCTCCTTCGTGCAG 60.154 63.158 0.00 0.00 0.00 4.41
425 426 1.605058 GCCTACCTCCTTCGTGCAGA 61.605 60.000 0.00 0.00 0.00 4.26
426 427 0.895530 CCTACCTCCTTCGTGCAGAA 59.104 55.000 0.00 0.00 37.31 3.02
427 428 1.482593 CCTACCTCCTTCGTGCAGAAT 59.517 52.381 0.00 0.00 38.34 2.40
428 429 2.693591 CCTACCTCCTTCGTGCAGAATA 59.306 50.000 0.00 0.00 38.34 1.75
429 430 2.674796 ACCTCCTTCGTGCAGAATAC 57.325 50.000 0.00 0.00 38.34 1.89
430 431 2.180276 ACCTCCTTCGTGCAGAATACT 58.820 47.619 0.00 0.00 38.34 2.12
431 432 3.362706 ACCTCCTTCGTGCAGAATACTA 58.637 45.455 0.00 0.00 38.34 1.82
432 433 3.381908 ACCTCCTTCGTGCAGAATACTAG 59.618 47.826 0.00 0.00 38.34 2.57
433 434 3.381908 CCTCCTTCGTGCAGAATACTAGT 59.618 47.826 0.00 0.00 38.34 2.57
434 435 4.579340 CCTCCTTCGTGCAGAATACTAGTA 59.421 45.833 4.77 4.77 38.34 1.82
435 436 5.241949 CCTCCTTCGTGCAGAATACTAGTAT 59.758 44.000 9.71 9.71 38.34 2.12
436 437 6.239064 CCTCCTTCGTGCAGAATACTAGTATT 60.239 42.308 24.86 24.86 38.34 1.89
597 598 3.663025 AGCCGTTTTAACCGCTTAACTA 58.337 40.909 3.18 0.00 39.81 2.24
694 696 3.234630 CTCGGTCGGAACCAGCCAA 62.235 63.158 0.00 0.00 46.86 4.52
721 723 2.968156 CAAAACGACCGACCGGCA 60.968 61.111 8.55 0.00 39.32 5.69
787 817 2.463589 TTTCCTCCGGCAACTGCGAT 62.464 55.000 0.00 0.00 43.26 4.58
882 918 5.817296 GGATGAGTACAACAACATGCAGATA 59.183 40.000 0.00 0.00 32.81 1.98
1132 1177 3.517296 TTGTGGCATTTGAAGGGACTA 57.483 42.857 0.00 0.00 38.49 2.59
1183 1229 6.543465 TGCTACTACGGTAAGAGCAACTATTA 59.457 38.462 16.92 0.00 0.00 0.98
1232 1278 3.407698 TGGTGGTACATAGTGCAAACAG 58.592 45.455 0.00 0.00 44.52 3.16
1293 1339 4.682778 ACTGAAGTACAAAGCTGGTGTA 57.317 40.909 6.45 6.45 0.00 2.90
1331 1377 7.854166 AGCTAAATCTCTGATAGGAACTGAT 57.146 36.000 0.00 0.00 41.52 2.90
1338 1384 7.155442 TCTCTGATAGGAACTGATTCTAGGA 57.845 40.000 0.00 0.00 41.52 2.94
1480 1526 4.458989 GCATTTTCAGGATGGTGTGAACTA 59.541 41.667 0.00 0.00 36.16 2.24
1766 1812 5.934625 TGAACTTAAGGAGAAGAAGCATCAC 59.065 40.000 7.53 0.00 0.00 3.06
1870 1916 7.123098 TCAAGCTGATATCATTCAAAACACCAT 59.877 33.333 5.72 0.00 0.00 3.55
1932 1981 6.128309 CCTTAAAGAAGAGAAGAAGAAGCTGC 60.128 42.308 0.00 0.00 34.25 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.494918 CGCCGAAGTAGGACCTGG 59.505 66.667 3.53 0.00 0.00 4.45
1 2 2.050350 TCCGCCGAAGTAGGACCTG 61.050 63.158 3.53 0.00 0.00 4.00
2 3 2.050934 GTCCGCCGAAGTAGGACCT 61.051 63.158 0.00 0.00 46.40 3.85
3 4 2.493501 GTCCGCCGAAGTAGGACC 59.506 66.667 2.66 0.00 46.40 4.46
5 6 1.751927 GAGGTCCGCCGAAGTAGGA 60.752 63.158 0.00 0.00 40.50 2.94
6 7 0.465097 TAGAGGTCCGCCGAAGTAGG 60.465 60.000 0.00 0.00 40.50 3.18
7 8 0.662085 GTAGAGGTCCGCCGAAGTAG 59.338 60.000 0.00 0.00 40.50 2.57
8 9 0.749454 GGTAGAGGTCCGCCGAAGTA 60.749 60.000 0.00 0.00 40.50 2.24
9 10 2.050934 GGTAGAGGTCCGCCGAAGT 61.051 63.158 0.00 0.00 40.50 3.01
10 11 1.601419 TTGGTAGAGGTCCGCCGAAG 61.601 60.000 0.00 0.00 40.50 3.79
11 12 1.601419 CTTGGTAGAGGTCCGCCGAA 61.601 60.000 0.00 0.00 40.50 4.30
12 13 2.036098 TTGGTAGAGGTCCGCCGA 59.964 61.111 0.00 0.00 40.50 5.54
13 14 2.494918 CTTGGTAGAGGTCCGCCG 59.505 66.667 0.00 0.00 40.50 6.46
14 15 2.901042 CCTTGGTAGAGGTCCGCC 59.099 66.667 0.00 0.00 31.89 6.13
15 16 2.187163 GCCTTGGTAGAGGTCCGC 59.813 66.667 0.00 0.00 39.11 5.54
16 17 0.970937 TCAGCCTTGGTAGAGGTCCG 60.971 60.000 0.00 0.00 39.11 4.79
17 18 0.827368 CTCAGCCTTGGTAGAGGTCC 59.173 60.000 0.00 0.00 39.11 4.46
18 19 0.176910 GCTCAGCCTTGGTAGAGGTC 59.823 60.000 10.71 0.00 39.11 3.85
19 20 1.268283 GGCTCAGCCTTGGTAGAGGT 61.268 60.000 9.09 0.00 46.69 3.85
20 21 1.524482 GGCTCAGCCTTGGTAGAGG 59.476 63.158 9.09 0.00 46.69 3.69
31 32 0.894141 TGAAGAGAGTGAGGCTCAGC 59.106 55.000 19.38 13.20 46.47 4.26
32 33 2.424601 CTCTGAAGAGAGTGAGGCTCAG 59.575 54.545 19.38 2.64 46.47 3.35
33 34 2.445427 CTCTGAAGAGAGTGAGGCTCA 58.555 52.381 14.43 14.43 46.47 4.26
34 35 1.134946 GCTCTGAAGAGAGTGAGGCTC 59.865 57.143 11.56 7.79 46.76 4.70
35 36 1.185315 GCTCTGAAGAGAGTGAGGCT 58.815 55.000 11.56 0.00 46.76 4.58
36 37 0.175531 GGCTCTGAAGAGAGTGAGGC 59.824 60.000 11.56 0.00 46.76 4.70
37 38 1.477700 CAGGCTCTGAAGAGAGTGAGG 59.522 57.143 11.56 0.00 46.76 3.86
38 39 1.135024 GCAGGCTCTGAAGAGAGTGAG 60.135 57.143 11.56 0.00 46.76 3.51
39 40 0.894141 GCAGGCTCTGAAGAGAGTGA 59.106 55.000 11.56 0.00 46.76 3.41
40 41 0.458197 CGCAGGCTCTGAAGAGAGTG 60.458 60.000 11.56 8.00 46.76 3.51
41 42 1.889454 CGCAGGCTCTGAAGAGAGT 59.111 57.895 11.56 0.00 46.76 3.24
43 44 2.575993 GCGCAGGCTCTGAAGAGA 59.424 61.111 11.56 0.00 44.74 3.10
67 68 1.677637 GGAGGTGGTAGAGGCCGAAG 61.678 65.000 0.00 0.00 0.00 3.79
68 69 1.684734 GGAGGTGGTAGAGGCCGAA 60.685 63.158 0.00 0.00 0.00 4.30
69 70 2.043248 GGAGGTGGTAGAGGCCGA 60.043 66.667 0.00 0.00 0.00 5.54
70 71 3.155167 GGGAGGTGGTAGAGGCCG 61.155 72.222 0.00 0.00 0.00 6.13
71 72 2.768769 GGGGAGGTGGTAGAGGCC 60.769 72.222 0.00 0.00 0.00 5.19
72 73 2.066999 CAGGGGAGGTGGTAGAGGC 61.067 68.421 0.00 0.00 0.00 4.70
73 74 2.066999 GCAGGGGAGGTGGTAGAGG 61.067 68.421 0.00 0.00 0.00 3.69
74 75 1.306141 TGCAGGGGAGGTGGTAGAG 60.306 63.158 0.00 0.00 0.00 2.43
75 76 1.306141 CTGCAGGGGAGGTGGTAGA 60.306 63.158 5.57 0.00 0.00 2.59
76 77 2.370445 CCTGCAGGGGAGGTGGTAG 61.370 68.421 26.14 0.00 0.00 3.18
77 78 1.817572 TACCTGCAGGGGAGGTGGTA 61.818 60.000 35.42 14.95 43.99 3.25
78 79 3.188355 TACCTGCAGGGGAGGTGGT 62.188 63.158 35.42 16.02 43.99 4.16
79 80 2.285368 TACCTGCAGGGGAGGTGG 60.285 66.667 35.42 10.38 43.99 4.61
80 81 3.313874 CTACCTGCAGGGGAGGTG 58.686 66.667 35.42 14.77 43.99 4.00
83 84 1.807814 ATTACCTACCTGCAGGGGAG 58.192 55.000 35.42 28.86 45.77 4.30
84 85 2.280308 AATTACCTACCTGCAGGGGA 57.720 50.000 35.42 21.98 40.29 4.81
85 86 2.105993 GGTAATTACCTACCTGCAGGGG 59.894 54.545 35.42 28.56 43.10 4.79
86 87 2.105993 GGGTAATTACCTACCTGCAGGG 59.894 54.545 35.42 20.74 45.72 4.45
87 88 2.105993 GGGGTAATTACCTACCTGCAGG 59.894 54.545 31.60 31.60 45.72 4.85
88 89 3.046374 AGGGGTAATTACCTACCTGCAG 58.954 50.000 29.26 6.78 45.72 4.41
89 90 3.139606 AGGGGTAATTACCTACCTGCA 57.860 47.619 29.26 0.00 45.72 4.41
90 91 3.581770 CCTAGGGGTAATTACCTACCTGC 59.418 52.174 29.17 16.32 45.72 4.85
91 92 4.837298 GTCCTAGGGGTAATTACCTACCTG 59.163 50.000 29.17 21.55 45.72 4.00
92 93 4.448347 CGTCCTAGGGGTAATTACCTACCT 60.448 50.000 29.26 27.67 45.72 3.08
93 94 3.829026 CGTCCTAGGGGTAATTACCTACC 59.171 52.174 29.26 23.26 45.72 3.18
94 95 3.256879 GCGTCCTAGGGGTAATTACCTAC 59.743 52.174 29.26 22.64 45.72 3.18
95 96 3.140895 AGCGTCCTAGGGGTAATTACCTA 59.859 47.826 29.26 16.48 45.72 3.08
96 97 2.090887 AGCGTCCTAGGGGTAATTACCT 60.091 50.000 29.26 16.24 45.72 3.08
97 98 2.323599 AGCGTCCTAGGGGTAATTACC 58.676 52.381 24.19 24.19 45.71 2.85
98 99 3.385755 TCAAGCGTCCTAGGGGTAATTAC 59.614 47.826 9.46 7.09 0.00 1.89
99 100 3.385755 GTCAAGCGTCCTAGGGGTAATTA 59.614 47.826 9.46 0.00 0.00 1.40
100 101 2.169978 GTCAAGCGTCCTAGGGGTAATT 59.830 50.000 9.46 0.00 0.00 1.40
101 102 1.761198 GTCAAGCGTCCTAGGGGTAAT 59.239 52.381 9.46 0.00 0.00 1.89
102 103 1.188863 GTCAAGCGTCCTAGGGGTAA 58.811 55.000 9.46 0.00 0.00 2.85
103 104 0.040058 TGTCAAGCGTCCTAGGGGTA 59.960 55.000 9.46 0.00 0.00 3.69
104 105 0.617820 ATGTCAAGCGTCCTAGGGGT 60.618 55.000 9.46 0.00 0.00 4.95
105 106 0.541863 AATGTCAAGCGTCCTAGGGG 59.458 55.000 9.46 2.41 0.00 4.79
106 107 1.473434 GGAATGTCAAGCGTCCTAGGG 60.473 57.143 9.46 0.00 0.00 3.53
107 108 1.802880 CGGAATGTCAAGCGTCCTAGG 60.803 57.143 0.82 0.82 0.00 3.02
108 109 1.134367 TCGGAATGTCAAGCGTCCTAG 59.866 52.381 0.00 0.00 0.00 3.02
109 110 1.179152 TCGGAATGTCAAGCGTCCTA 58.821 50.000 0.00 0.00 0.00 2.94
110 111 0.537188 ATCGGAATGTCAAGCGTCCT 59.463 50.000 0.00 0.00 0.00 3.85
111 112 0.931005 GATCGGAATGTCAAGCGTCC 59.069 55.000 0.00 0.00 0.00 4.79
112 113 0.572590 CGATCGGAATGTCAAGCGTC 59.427 55.000 7.38 0.00 0.00 5.19
113 114 0.172578 TCGATCGGAATGTCAAGCGT 59.827 50.000 16.41 0.00 0.00 5.07
114 115 0.848942 CTCGATCGGAATGTCAAGCG 59.151 55.000 16.41 0.00 0.00 4.68
115 116 1.927895 ACTCGATCGGAATGTCAAGC 58.072 50.000 16.41 0.00 0.00 4.01
116 117 4.032217 CAGAAACTCGATCGGAATGTCAAG 59.968 45.833 16.41 4.93 0.00 3.02
117 118 3.926527 CAGAAACTCGATCGGAATGTCAA 59.073 43.478 16.41 0.00 0.00 3.18
118 119 3.192633 TCAGAAACTCGATCGGAATGTCA 59.807 43.478 16.41 0.00 0.00 3.58
119 120 3.548268 GTCAGAAACTCGATCGGAATGTC 59.452 47.826 16.41 5.80 0.00 3.06
120 121 3.056821 TGTCAGAAACTCGATCGGAATGT 60.057 43.478 16.41 6.71 0.00 2.71
121 122 3.511699 TGTCAGAAACTCGATCGGAATG 58.488 45.455 16.41 6.07 0.00 2.67
122 123 3.444034 TCTGTCAGAAACTCGATCGGAAT 59.556 43.478 16.41 0.00 0.00 3.01
123 124 2.817844 TCTGTCAGAAACTCGATCGGAA 59.182 45.455 16.41 0.00 0.00 4.30
124 125 2.161808 GTCTGTCAGAAACTCGATCGGA 59.838 50.000 16.41 0.00 0.00 4.55
125 126 2.520979 GTCTGTCAGAAACTCGATCGG 58.479 52.381 16.41 8.65 0.00 4.18
126 127 2.095212 TGGTCTGTCAGAAACTCGATCG 60.095 50.000 9.36 9.36 0.00 3.69
127 128 3.577649 TGGTCTGTCAGAAACTCGATC 57.422 47.619 3.51 0.00 0.00 3.69
128 129 4.499183 GATTGGTCTGTCAGAAACTCGAT 58.501 43.478 3.51 0.81 0.00 3.59
129 130 3.611766 CGATTGGTCTGTCAGAAACTCGA 60.612 47.826 15.80 4.36 0.00 4.04
130 131 2.663602 CGATTGGTCTGTCAGAAACTCG 59.336 50.000 3.51 7.93 0.00 4.18
131 132 3.914312 TCGATTGGTCTGTCAGAAACTC 58.086 45.455 3.51 0.00 0.00 3.01
132 133 4.021104 TGATCGATTGGTCTGTCAGAAACT 60.021 41.667 3.51 0.00 0.00 2.66
133 134 4.092091 GTGATCGATTGGTCTGTCAGAAAC 59.908 45.833 3.51 1.44 0.00 2.78
134 135 4.245660 GTGATCGATTGGTCTGTCAGAAA 58.754 43.478 3.51 0.00 0.00 2.52
135 136 3.673323 CGTGATCGATTGGTCTGTCAGAA 60.673 47.826 3.51 0.00 39.71 3.02
136 137 2.159379 CGTGATCGATTGGTCTGTCAGA 60.159 50.000 0.00 0.00 39.71 3.27
137 138 2.188524 CGTGATCGATTGGTCTGTCAG 58.811 52.381 0.00 0.00 39.71 3.51
138 139 1.735700 GCGTGATCGATTGGTCTGTCA 60.736 52.381 0.00 0.00 39.71 3.58
139 140 0.924090 GCGTGATCGATTGGTCTGTC 59.076 55.000 0.00 0.00 39.71 3.51
140 141 0.802222 CGCGTGATCGATTGGTCTGT 60.802 55.000 0.00 0.00 39.71 3.41
141 142 1.920051 CGCGTGATCGATTGGTCTG 59.080 57.895 0.00 0.00 39.71 3.51
142 143 1.878522 GCGCGTGATCGATTGGTCT 60.879 57.895 8.43 0.00 39.71 3.85
143 144 2.621000 GCGCGTGATCGATTGGTC 59.379 61.111 8.43 0.00 39.71 4.02
144 145 2.011741 TAGGCGCGTGATCGATTGGT 62.012 55.000 13.84 0.00 39.71 3.67
145 146 0.667487 ATAGGCGCGTGATCGATTGG 60.667 55.000 13.84 0.00 39.71 3.16
146 147 0.710567 GATAGGCGCGTGATCGATTG 59.289 55.000 13.84 0.00 39.71 2.67
147 148 0.598562 AGATAGGCGCGTGATCGATT 59.401 50.000 13.84 0.00 39.71 3.34
148 149 0.598562 AAGATAGGCGCGTGATCGAT 59.401 50.000 13.84 0.00 39.71 3.59
149 150 0.317854 CAAGATAGGCGCGTGATCGA 60.318 55.000 13.84 0.00 39.71 3.59
150 151 0.595053 ACAAGATAGGCGCGTGATCG 60.595 55.000 13.84 0.00 40.37 3.69
151 152 1.523095 GAACAAGATAGGCGCGTGATC 59.477 52.381 13.84 9.67 0.00 2.92
152 153 1.571919 GAACAAGATAGGCGCGTGAT 58.428 50.000 13.84 0.00 0.00 3.06
153 154 0.800683 CGAACAAGATAGGCGCGTGA 60.801 55.000 13.84 0.00 0.00 4.35
154 155 1.076533 ACGAACAAGATAGGCGCGTG 61.077 55.000 13.84 0.00 0.00 5.34
155 156 0.801067 GACGAACAAGATAGGCGCGT 60.801 55.000 8.43 8.08 0.00 6.01
156 157 1.798368 CGACGAACAAGATAGGCGCG 61.798 60.000 0.00 0.00 0.00 6.86
157 158 0.801067 ACGACGAACAAGATAGGCGC 60.801 55.000 0.00 0.00 0.00 6.53
158 159 1.189403 GACGACGAACAAGATAGGCG 58.811 55.000 0.00 0.00 0.00 5.52
159 160 2.186076 CAGACGACGAACAAGATAGGC 58.814 52.381 0.00 0.00 0.00 3.93
160 161 2.186076 GCAGACGACGAACAAGATAGG 58.814 52.381 0.00 0.00 0.00 2.57
161 162 2.863739 TGCAGACGACGAACAAGATAG 58.136 47.619 0.00 0.00 0.00 2.08
162 163 3.179048 CATGCAGACGACGAACAAGATA 58.821 45.455 0.00 0.00 0.00 1.98
163 164 1.995484 CATGCAGACGACGAACAAGAT 59.005 47.619 0.00 0.00 0.00 2.40
164 165 1.418373 CATGCAGACGACGAACAAGA 58.582 50.000 0.00 0.00 0.00 3.02
165 166 0.179240 GCATGCAGACGACGAACAAG 60.179 55.000 14.21 0.00 0.00 3.16
166 167 0.878086 TGCATGCAGACGACGAACAA 60.878 50.000 18.46 0.00 0.00 2.83
167 168 1.284297 CTGCATGCAGACGACGAACA 61.284 55.000 38.90 3.65 46.30 3.18
168 169 1.417592 CTGCATGCAGACGACGAAC 59.582 57.895 38.90 0.00 46.30 3.95
169 170 1.737735 CCTGCATGCAGACGACGAA 60.738 57.895 42.21 8.85 46.30 3.85
170 171 2.125952 CCTGCATGCAGACGACGA 60.126 61.111 42.21 9.62 46.30 4.20
171 172 3.857854 GCCTGCATGCAGACGACG 61.858 66.667 42.21 27.89 46.30 5.12
172 173 1.975363 GAAGCCTGCATGCAGACGAC 61.975 60.000 42.21 28.40 46.30 4.34
173 174 1.742880 GAAGCCTGCATGCAGACGA 60.743 57.895 42.21 11.98 46.30 4.20
174 175 2.789917 GAAGCCTGCATGCAGACG 59.210 61.111 42.21 29.22 46.30 4.18
175 176 1.580845 AACGAAGCCTGCATGCAGAC 61.581 55.000 42.21 34.03 46.30 3.51
176 177 1.302752 AACGAAGCCTGCATGCAGA 60.303 52.632 42.21 13.57 46.30 4.26
177 178 1.154093 CAACGAAGCCTGCATGCAG 60.154 57.895 35.88 35.88 43.26 4.41
178 179 2.628696 CCAACGAAGCCTGCATGCA 61.629 57.895 21.29 21.29 0.00 3.96
179 180 2.146073 AACCAACGAAGCCTGCATGC 62.146 55.000 11.82 11.82 0.00 4.06
180 181 0.109597 GAACCAACGAAGCCTGCATG 60.110 55.000 0.00 0.00 0.00 4.06
181 182 1.577328 CGAACCAACGAAGCCTGCAT 61.577 55.000 0.00 0.00 35.09 3.96
182 183 2.250939 CGAACCAACGAAGCCTGCA 61.251 57.895 0.00 0.00 35.09 4.41
183 184 2.556287 CGAACCAACGAAGCCTGC 59.444 61.111 0.00 0.00 35.09 4.85
184 185 2.966309 GCCGAACCAACGAAGCCTG 61.966 63.158 0.00 0.00 35.09 4.85
185 186 2.668550 GCCGAACCAACGAAGCCT 60.669 61.111 0.00 0.00 35.09 4.58
186 187 4.084888 CGCCGAACCAACGAAGCC 62.085 66.667 0.00 0.00 35.09 4.35
187 188 4.084888 CCGCCGAACCAACGAAGC 62.085 66.667 0.00 0.00 35.09 3.86
188 189 2.663852 ACCGCCGAACCAACGAAG 60.664 61.111 0.00 0.00 35.09 3.79
189 190 2.968156 CACCGCCGAACCAACGAA 60.968 61.111 0.00 0.00 35.09 3.85
190 191 4.224274 ACACCGCCGAACCAACGA 62.224 61.111 0.00 0.00 35.09 3.85
191 192 4.007940 CACACCGCCGAACCAACG 62.008 66.667 0.00 0.00 0.00 4.10
192 193 4.322385 GCACACCGCCGAACCAAC 62.322 66.667 0.00 0.00 32.94 3.77
202 203 4.354212 CTCAACGCACGCACACCG 62.354 66.667 0.00 0.00 44.21 4.94
203 204 4.666532 GCTCAACGCACGCACACC 62.667 66.667 0.00 0.00 38.92 4.16
204 205 3.640000 AGCTCAACGCACGCACAC 61.640 61.111 0.00 0.00 42.61 3.82
205 206 3.639008 CAGCTCAACGCACGCACA 61.639 61.111 0.00 0.00 42.61 4.57
206 207 3.337889 TCAGCTCAACGCACGCAC 61.338 61.111 0.00 0.00 42.61 5.34
207 208 3.337889 GTCAGCTCAACGCACGCA 61.338 61.111 0.00 0.00 42.61 5.24
208 209 4.415501 CGTCAGCTCAACGCACGC 62.416 66.667 5.32 0.00 42.61 5.34
209 210 3.767230 CCGTCAGCTCAACGCACG 61.767 66.667 11.73 1.27 42.61 5.34
210 211 3.414700 CCCGTCAGCTCAACGCAC 61.415 66.667 11.73 0.00 42.61 5.34
211 212 3.158537 TTCCCGTCAGCTCAACGCA 62.159 57.895 11.73 0.00 42.61 5.24
212 213 2.357034 TTCCCGTCAGCTCAACGC 60.357 61.111 11.73 0.00 38.77 4.84
213 214 2.027625 GGTTCCCGTCAGCTCAACG 61.028 63.158 10.50 10.50 39.78 4.10
214 215 0.534203 TTGGTTCCCGTCAGCTCAAC 60.534 55.000 0.00 0.00 0.00 3.18
215 216 0.250295 CTTGGTTCCCGTCAGCTCAA 60.250 55.000 0.00 0.00 0.00 3.02
216 217 1.371183 CTTGGTTCCCGTCAGCTCA 59.629 57.895 0.00 0.00 0.00 4.26
217 218 1.376037 CCTTGGTTCCCGTCAGCTC 60.376 63.158 0.00 0.00 0.00 4.09
218 219 2.750350 CCTTGGTTCCCGTCAGCT 59.250 61.111 0.00 0.00 0.00 4.24
219 220 3.056328 GCCTTGGTTCCCGTCAGC 61.056 66.667 0.00 0.00 0.00 4.26
220 221 1.672356 CAGCCTTGGTTCCCGTCAG 60.672 63.158 0.00 0.00 0.00 3.51
221 222 2.429930 CAGCCTTGGTTCCCGTCA 59.570 61.111 0.00 0.00 0.00 4.35
222 223 3.056328 GCAGCCTTGGTTCCCGTC 61.056 66.667 0.00 0.00 0.00 4.79
223 224 4.660938 GGCAGCCTTGGTTCCCGT 62.661 66.667 3.29 0.00 0.00 5.28
224 225 3.868200 AAGGCAGCCTTGGTTCCCG 62.868 63.158 26.87 0.00 42.96 5.14
225 226 1.979155 GAAGGCAGCCTTGGTTCCC 60.979 63.158 32.31 12.02 44.82 3.97
226 227 0.540597 AAGAAGGCAGCCTTGGTTCC 60.541 55.000 32.31 16.24 44.82 3.62
227 228 1.332195 AAAGAAGGCAGCCTTGGTTC 58.668 50.000 32.31 17.06 44.82 3.62
228 229 2.519013 CTAAAGAAGGCAGCCTTGGTT 58.481 47.619 32.31 24.16 44.82 3.67
229 230 1.888391 GCTAAAGAAGGCAGCCTTGGT 60.888 52.381 32.31 15.49 44.82 3.67
230 231 0.813821 GCTAAAGAAGGCAGCCTTGG 59.186 55.000 32.31 10.78 44.82 3.61
231 232 1.742268 GAGCTAAAGAAGGCAGCCTTG 59.258 52.381 32.31 17.22 44.82 3.61
233 234 0.254462 GGAGCTAAAGAAGGCAGCCT 59.746 55.000 8.70 8.70 35.88 4.58
234 235 0.749818 GGGAGCTAAAGAAGGCAGCC 60.750 60.000 1.84 1.84 35.88 4.85
235 236 0.254462 AGGGAGCTAAAGAAGGCAGC 59.746 55.000 0.00 0.00 35.49 5.25
236 237 1.836802 AGAGGGAGCTAAAGAAGGCAG 59.163 52.381 0.00 0.00 0.00 4.85
237 238 1.556911 CAGAGGGAGCTAAAGAAGGCA 59.443 52.381 0.00 0.00 0.00 4.75
238 239 1.134250 CCAGAGGGAGCTAAAGAAGGC 60.134 57.143 0.00 0.00 35.59 4.35
239 240 2.472029 TCCAGAGGGAGCTAAAGAAGG 58.528 52.381 0.00 0.00 38.64 3.46
264 265 3.200593 GCGGTGCAGCAGAGGATG 61.201 66.667 17.33 0.00 37.05 3.51
265 266 3.709633 TGCGGTGCAGCAGAGGAT 61.710 61.111 17.33 0.00 42.92 3.24
335 336 2.358737 CCAGTTCACGGCTCACCC 60.359 66.667 0.00 0.00 0.00 4.61
336 337 3.050275 GCCAGTTCACGGCTCACC 61.050 66.667 0.00 0.00 46.56 4.02
342 343 3.316573 GAGGGAGGCCAGTTCACGG 62.317 68.421 5.01 0.00 0.00 4.94
343 344 2.266055 GAGGGAGGCCAGTTCACG 59.734 66.667 5.01 0.00 0.00 4.35
344 345 2.266055 CGAGGGAGGCCAGTTCAC 59.734 66.667 5.01 0.00 0.00 3.18
345 346 3.706373 GCGAGGGAGGCCAGTTCA 61.706 66.667 5.01 0.00 0.00 3.18
346 347 4.821589 CGCGAGGGAGGCCAGTTC 62.822 72.222 5.01 0.00 0.00 3.01
349 350 4.821589 GAACGCGAGGGAGGCCAG 62.822 72.222 15.93 0.00 0.00 4.85
354 355 4.421479 AGCACGAACGCGAGGGAG 62.421 66.667 15.93 0.00 41.64 4.30
355 356 4.415332 GAGCACGAACGCGAGGGA 62.415 66.667 15.93 0.00 41.64 4.20
356 357 4.421479 AGAGCACGAACGCGAGGG 62.421 66.667 15.93 5.92 41.64 4.30
357 358 2.876645 GAGAGCACGAACGCGAGG 60.877 66.667 15.93 3.28 41.64 4.63
358 359 2.876645 GGAGAGCACGAACGCGAG 60.877 66.667 15.93 6.25 41.64 5.03
359 360 3.666253 TGGAGAGCACGAACGCGA 61.666 61.111 15.93 0.00 41.64 5.87
360 361 3.470567 GTGGAGAGCACGAACGCG 61.471 66.667 3.53 3.53 44.79 6.01
361 362 3.112709 GGTGGAGAGCACGAACGC 61.113 66.667 0.00 0.00 0.00 4.84
362 363 2.805353 CGGTGGAGAGCACGAACG 60.805 66.667 0.00 0.00 0.00 3.95
363 364 3.112709 GCGGTGGAGAGCACGAAC 61.113 66.667 0.00 0.00 0.00 3.95
364 365 4.373116 GGCGGTGGAGAGCACGAA 62.373 66.667 0.00 0.00 34.54 3.85
379 380 3.508840 GTACATGCTGTGGCCGGC 61.509 66.667 21.18 21.18 43.67 6.13
380 381 1.673993 TTGTACATGCTGTGGCCGG 60.674 57.895 0.00 0.00 37.74 6.13
381 382 1.501741 GTTGTACATGCTGTGGCCG 59.498 57.895 0.00 0.00 37.74 6.13
382 383 1.501741 CGTTGTACATGCTGTGGCC 59.498 57.895 0.00 0.00 37.74 5.36
383 384 1.501741 CCGTTGTACATGCTGTGGC 59.498 57.895 0.00 0.00 39.26 5.01
384 385 1.233950 TGCCGTTGTACATGCTGTGG 61.234 55.000 0.00 0.00 0.00 4.17
385 386 0.110238 GTGCCGTTGTACATGCTGTG 60.110 55.000 0.00 0.00 0.00 3.66
386 387 1.234615 GGTGCCGTTGTACATGCTGT 61.235 55.000 0.00 0.00 0.00 4.40
387 388 1.501741 GGTGCCGTTGTACATGCTG 59.498 57.895 0.00 0.00 0.00 4.41
388 389 2.032634 CGGTGCCGTTGTACATGCT 61.033 57.895 0.00 0.00 34.35 3.79
389 390 2.478746 CGGTGCCGTTGTACATGC 59.521 61.111 0.00 0.69 34.35 4.06
390 391 2.478746 GCGGTGCCGTTGTACATG 59.521 61.111 12.46 0.00 42.09 3.21
391 392 2.744709 GGCGGTGCCGTTGTACAT 60.745 61.111 12.46 0.00 39.62 2.29
401 402 2.187163 GAAGGAGGTAGGCGGTGC 59.813 66.667 0.00 0.00 0.00 5.01
402 403 2.348888 ACGAAGGAGGTAGGCGGTG 61.349 63.158 0.00 0.00 0.00 4.94
403 404 2.036890 ACGAAGGAGGTAGGCGGT 59.963 61.111 0.00 0.00 0.00 5.68
404 405 2.494918 CACGAAGGAGGTAGGCGG 59.505 66.667 0.00 0.00 0.00 6.13
405 406 2.202756 GCACGAAGGAGGTAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
406 407 1.153549 CTGCACGAAGGAGGTAGGC 60.154 63.158 0.00 0.00 31.00 3.93
407 408 0.895530 TTCTGCACGAAGGAGGTAGG 59.104 55.000 0.00 0.00 36.17 3.18
408 409 2.969628 ATTCTGCACGAAGGAGGTAG 57.030 50.000 0.00 0.00 36.17 3.18
409 410 3.362706 AGTATTCTGCACGAAGGAGGTA 58.637 45.455 0.00 0.00 36.17 3.08
410 411 2.180276 AGTATTCTGCACGAAGGAGGT 58.820 47.619 0.00 0.00 36.17 3.85
411 412 2.969628 AGTATTCTGCACGAAGGAGG 57.030 50.000 0.00 0.00 36.17 4.30
412 413 4.640789 ACTAGTATTCTGCACGAAGGAG 57.359 45.455 0.00 0.00 34.56 3.69
413 414 6.710597 AATACTAGTATTCTGCACGAAGGA 57.289 37.500 20.27 0.00 34.56 3.36
414 415 6.978659 TGAAATACTAGTATTCTGCACGAAGG 59.021 38.462 24.80 0.00 34.90 3.46
415 416 7.305475 CGTGAAATACTAGTATTCTGCACGAAG 60.305 40.741 37.47 24.81 45.34 3.79
416 417 6.471198 CGTGAAATACTAGTATTCTGCACGAA 59.529 38.462 37.47 18.30 45.34 3.85
417 418 5.969435 CGTGAAATACTAGTATTCTGCACGA 59.031 40.000 37.47 18.03 45.34 4.35
418 419 5.969435 TCGTGAAATACTAGTATTCTGCACG 59.031 40.000 36.42 36.42 44.78 5.34
419 420 6.973474 ACTCGTGAAATACTAGTATTCTGCAC 59.027 38.462 24.80 25.93 33.93 4.57
420 421 7.096884 ACTCGTGAAATACTAGTATTCTGCA 57.903 36.000 24.80 19.71 33.93 4.41
421 422 9.680315 AATACTCGTGAAATACTAGTATTCTGC 57.320 33.333 24.80 17.84 46.76 4.26
436 437 8.662141 GGTAGCTTTTTATCAAATACTCGTGAA 58.338 33.333 0.00 0.00 0.00 3.18
451 452 5.523883 ACCCCTAATGTGGTAGCTTTTTA 57.476 39.130 0.00 0.00 31.61 1.52
457 458 3.070590 ACGAATACCCCTAATGTGGTAGC 59.929 47.826 0.00 0.00 40.30 3.58
560 561 1.597663 CGGCTAAATGGACGATCAACC 59.402 52.381 0.00 0.00 40.66 3.77
633 634 2.319841 GGCGTCCGTTAGCCGTTTT 61.320 57.895 0.00 0.00 44.22 2.43
694 696 3.929660 GTCGTTTTGACCTAGCCCT 57.070 52.632 0.00 0.00 42.04 5.19
721 723 2.997897 GTGAGTGAGGGTCGGCCT 60.998 66.667 5.77 0.00 34.45 5.19
851 881 5.242434 TGTTGTTGTACTCATCCATGTACC 58.758 41.667 0.00 0.00 38.48 3.34
882 918 8.317679 AGAGTGAGCTCATTTACAAAATACTCT 58.682 33.333 21.47 17.75 44.00 3.24
896 932 4.088634 AGAAGAGAACAGAGTGAGCTCAT 58.911 43.478 21.47 9.05 44.00 2.90
1132 1177 4.043310 TCCAATGAATCTCCTTCCAGTGTT 59.957 41.667 0.00 0.00 32.49 3.32
1232 1278 9.793252 ATACTGAAACAACAAGAATATCAATGC 57.207 29.630 0.00 0.00 0.00 3.56
1293 1339 7.332926 CAGAGATTTAGCTAACACATGAACACT 59.667 37.037 5.45 0.00 0.00 3.55
1331 1377 7.633789 AGACCAATTTTAGATGCTTCCTAGAA 58.366 34.615 0.00 0.00 0.00 2.10
1338 1384 8.635765 TTCAGTTAGACCAATTTTAGATGCTT 57.364 30.769 0.00 0.00 0.00 3.91
1447 1493 6.038356 CCATCCTGAAAATGCAGTGAAATAC 58.962 40.000 0.00 0.00 34.06 1.89
1480 1526 5.395768 GCATCTACCAACTCTAGAACACCAT 60.396 44.000 0.00 0.00 0.00 3.55
1544 1590 6.157645 GGTTCTCCTCATGATACATATCCCAT 59.842 42.308 0.00 0.00 31.71 4.00
1735 1781 8.518702 GCTTCTTCTCCTTAAGTTCATTGATTT 58.481 33.333 0.97 0.00 0.00 2.17
1766 1812 2.867109 TCTTTGCCTTCTCCTCAAGG 57.133 50.000 0.00 0.00 45.35 3.61
1841 1887 8.025445 GTGTTTTGAATGATATCAGCTTGACTT 58.975 33.333 11.78 0.00 0.00 3.01
1870 1916 3.114606 TGTATCTCCTTCATGGCCTTCA 58.885 45.455 3.32 0.00 35.26 3.02
1932 1981 4.034163 CAGTAGCTCAGAAATGACATGCTG 59.966 45.833 10.75 10.75 0.00 4.41
2271 2344 6.566197 AAAAAGACAGATAGAAACTGCAGG 57.434 37.500 19.93 0.00 38.74 4.85
2427 2518 1.074699 GGACCCCCTACCCGAGATT 60.075 63.158 0.00 0.00 0.00 2.40
2532 2624 6.665992 ATATTAATCAAGCAGGACGTAGGA 57.334 37.500 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.