Multiple sequence alignment - TraesCS2A01G515100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G515100 chr2A 100.000 5591 0 0 1 5591 739439697 739434107 0.000000e+00 10325.0
1 TraesCS2A01G515100 chr2A 85.481 2204 283 29 2208 4395 739688532 739686350 0.000000e+00 2263.0
2 TraesCS2A01G515100 chr2A 83.217 2151 308 35 2579 4697 739451744 739449615 0.000000e+00 1923.0
3 TraesCS2A01G515100 chr2A 81.715 1761 296 20 2338 4079 739702756 739701003 0.000000e+00 1445.0
4 TraesCS2A01G515100 chr2A 76.825 1411 254 51 1020 2403 739704130 739702766 0.000000e+00 726.0
5 TraesCS2A01G515100 chr2A 91.372 452 35 4 5144 5591 739449743 739449292 2.860000e-172 616.0
6 TraesCS2A01G515100 chr2A 77.580 901 154 33 972 1863 739691324 739690463 8.360000e-138 501.0
7 TraesCS2A01G515100 chr2A 92.803 264 17 2 11 273 748526099 748526361 1.140000e-101 381.0
8 TraesCS2A01G515100 chr2A 90.698 129 11 1 4569 4697 739434554 739434427 2.680000e-38 171.0
9 TraesCS2A01G515100 chr2A 90.698 129 11 1 5144 5271 739435129 739435001 2.680000e-38 171.0
10 TraesCS2A01G515100 chr2D 87.023 5294 501 95 349 5552 607942876 607937679 0.000000e+00 5799.0
11 TraesCS2A01G515100 chr2D 84.895 3469 446 58 973 4400 607973806 607970375 0.000000e+00 3432.0
12 TraesCS2A01G515100 chr2D 91.008 1935 131 24 1000 2916 607965284 607963375 0.000000e+00 2569.0
13 TraesCS2A01G515100 chr2D 88.935 1672 141 28 2981 4622 607961932 607960275 0.000000e+00 2023.0
14 TraesCS2A01G515100 chr2D 81.928 2064 355 13 2338 4392 608185991 608183937 0.000000e+00 1729.0
15 TraesCS2A01G515100 chr2D 94.699 981 44 7 4617 5591 607959003 607958025 0.000000e+00 1517.0
16 TraesCS2A01G515100 chr2D 94.093 237 10 3 4877 5110 607969937 607969702 1.920000e-94 357.0
17 TraesCS2A01G515100 chr2D 84.551 356 38 9 4433 4786 607970296 607969956 2.500000e-88 337.0
18 TraesCS2A01G515100 chr2D 91.473 129 10 1 4569 4697 607938087 607937960 5.760000e-40 176.0
19 TraesCS2A01G515100 chr2D 87.179 156 16 4 4544 4697 607958498 607958345 2.070000e-39 174.0
20 TraesCS2A01G515100 chr2D 90.698 129 11 1 5144 5271 607938672 607938544 2.680000e-38 171.0
21 TraesCS2A01G515100 chr2D 100.000 40 0 0 5552 5591 607937436 607937397 2.160000e-09 75.0
22 TraesCS2A01G515100 chr2B 92.122 3237 226 17 1000 4222 741154942 741151721 0.000000e+00 4538.0
23 TraesCS2A01G515100 chr2B 83.643 4469 590 85 972 5354 741118769 741114356 0.000000e+00 4072.0
24 TraesCS2A01G515100 chr2B 84.801 2816 344 40 1632 4404 741022336 741019562 0.000000e+00 2752.0
25 TraesCS2A01G515100 chr2B 79.634 2347 372 70 873 3162 741149215 741146918 0.000000e+00 1589.0
26 TraesCS2A01G515100 chr2B 89.963 1086 81 13 4518 5591 741019049 741017980 0.000000e+00 1376.0
27 TraesCS2A01G515100 chr2B 80.475 1516 275 19 2338 3839 741390645 741389137 0.000000e+00 1140.0
28 TraesCS2A01G515100 chr2B 89.362 752 50 18 599 1343 741023122 741022394 0.000000e+00 918.0
29 TraesCS2A01G515100 chr2B 82.423 586 100 3 3807 4392 741389127 741388545 5.000000e-140 508.0
30 TraesCS2A01G515100 chr2B 93.452 336 18 3 275 606 741023481 741023146 3.890000e-136 496.0
31 TraesCS2A01G515100 chr2B 95.489 266 10 2 11 274 162504782 162504517 1.860000e-114 424.0
32 TraesCS2A01G515100 chr2B 82.438 484 59 11 4639 5120 741137176 741136717 3.140000e-107 399.0
33 TraesCS2A01G515100 chr2B 94.811 212 9 2 5106 5317 741136700 741136491 4.180000e-86 329.0
34 TraesCS2A01G515100 chr2B 83.158 380 30 20 4210 4562 741150482 741150110 3.250000e-82 316.0
35 TraesCS2A01G515100 chr2B 83.271 269 27 10 681 945 741155195 741154941 1.210000e-56 231.0
36 TraesCS2A01G515100 chr2B 88.718 195 11 3 5398 5591 741113110 741112926 1.570000e-55 228.0
37 TraesCS2A01G515100 chr2B 86.667 150 17 3 4544 4692 741136688 741136541 4.480000e-36 163.0
38 TraesCS2A01G515100 chr6B 94.909 275 11 2 1 274 620871778 620871506 1.440000e-115 427.0
39 TraesCS2A01G515100 chr5B 95.472 265 10 2 11 274 701523512 701523249 6.700000e-114 422.0
40 TraesCS2A01G515100 chr5B 91.729 266 20 2 11 274 527949706 527949441 8.850000e-98 368.0
41 TraesCS2A01G515100 chr7A 95.455 264 9 3 11 273 8650476 8650737 8.660000e-113 418.0
42 TraesCS2A01G515100 chr7A 93.609 266 15 2 11 275 236327009 236326745 4.060000e-106 396.0
43 TraesCS2A01G515100 chr1D 94.340 265 14 1 11 274 450746844 450747108 6.740000e-109 405.0
44 TraesCS2A01G515100 chr1D 92.164 268 16 3 11 275 465019433 465019168 1.900000e-99 374.0
45 TraesCS2A01G515100 chr5D 82.036 334 50 9 5153 5485 37190090 37189766 5.520000e-70 276.0
46 TraesCS2A01G515100 chr3D 77.941 136 21 7 428 559 583101362 583101232 6.010000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G515100 chr2A 739434107 739439697 5590 True 10325.000000 10325 100.000000 1 5591 1 chr2A.!!$R1 5590
1 TraesCS2A01G515100 chr2A 739686350 739691324 4974 True 1382.000000 2263 81.530500 972 4395 2 chr2A.!!$R4 3423
2 TraesCS2A01G515100 chr2A 739449292 739451744 2452 True 1269.500000 1923 87.294500 2579 5591 2 chr2A.!!$R3 3012
3 TraesCS2A01G515100 chr2A 739701003 739704130 3127 True 1085.500000 1445 79.270000 1020 4079 2 chr2A.!!$R5 3059
4 TraesCS2A01G515100 chr2D 607937397 607942876 5479 True 2937.000000 5799 93.511500 349 5591 2 chr2D.!!$R2 5242
5 TraesCS2A01G515100 chr2D 608183937 608185991 2054 True 1729.000000 1729 81.928000 2338 4392 1 chr2D.!!$R1 2054
6 TraesCS2A01G515100 chr2D 607958025 607965284 7259 True 1570.750000 2569 90.455250 1000 5591 4 chr2D.!!$R4 4591
7 TraesCS2A01G515100 chr2D 607969702 607973806 4104 True 1375.333333 3432 87.846333 973 5110 3 chr2D.!!$R5 4137
8 TraesCS2A01G515100 chr2B 741112926 741118769 5843 True 2150.000000 4072 86.180500 972 5591 2 chr2B.!!$R3 4619
9 TraesCS2A01G515100 chr2B 741146918 741155195 8277 True 1668.500000 4538 84.546250 681 4562 4 chr2B.!!$R5 3881
10 TraesCS2A01G515100 chr2B 741017980 741023481 5501 True 1385.500000 2752 89.394500 275 5591 4 chr2B.!!$R2 5316
11 TraesCS2A01G515100 chr2B 741388545 741390645 2100 True 824.000000 1140 81.449000 2338 4392 2 chr2B.!!$R6 2054
12 TraesCS2A01G515100 chr2B 741136491 741137176 685 True 297.000000 399 87.972000 4544 5317 3 chr2B.!!$R4 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.035820 TAGTTTGTGGGCACGGATCC 60.036 55.000 0.00 0.00 0.00 3.36 F
715 751 0.174162 GGCTGCAACTAATTGGCCAG 59.826 55.000 5.11 0.00 40.81 4.85 F
1315 1375 0.304705 CTTGACGGTGTTGTCTGCAC 59.695 55.000 0.00 0.00 39.64 4.57 F
1369 1429 1.040646 CTATCCCTGTTCGCTAGCCA 58.959 55.000 9.66 0.02 0.00 4.75 F
1533 1598 1.075748 AATGCATTGGGAGGGGAGC 60.076 57.895 12.09 0.00 0.00 4.70 F
1620 1685 2.328099 GGTCTTCCAAGCGCAGGTG 61.328 63.158 11.47 4.23 39.47 4.00 F
1745 1848 3.309682 TCAGAAACTTGCGACAACTGAAG 59.690 43.478 0.00 0.00 31.51 3.02 F
2116 3904 3.701205 TGCACTTCCTCAGCTGAATTA 57.299 42.857 18.85 2.92 0.00 1.40 F
4066 7405 2.414994 ATGAGCTGAGTGGACCAATG 57.585 50.000 0.00 0.00 0.00 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 1238 0.671472 CCACGAGCAGCAGTCATCAA 60.671 55.000 0.00 0.00 0.00 2.57 R
2069 3856 1.040339 ACACAGGGAGAGATCCGCTC 61.040 60.000 4.94 4.94 44.29 5.03 R
2738 4627 3.947910 ATTGGACAAATGAAGCACCTG 57.052 42.857 0.00 0.00 0.00 4.00 R
2884 4774 6.597672 GGTTCATGTGTATCTTGATAACACCA 59.402 38.462 14.51 8.11 42.22 4.17 R
3448 6736 7.255451 CCAGTAAGGTTAAGAAAATTCAGCACA 60.255 37.037 0.00 0.00 0.00 4.57 R
3728 7016 5.423886 GTCCCTATCACCTTTGAAAGAGAG 58.576 45.833 6.49 0.00 34.61 3.20 R
3786 7074 8.050325 AGTCATAGACACTGAAGTAGTCATACT 58.950 37.037 12.44 0.00 38.24 2.12 R
4217 7557 1.227380 CGGGAGCAGCACAGGTATC 60.227 63.158 0.00 0.00 0.00 2.24 R
5168 12833 4.917906 AGCAAGAGAAGGAATTAGTGGT 57.082 40.909 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.207791 TCTCTGAGGAGGGGAATTGC 58.792 55.000 4.59 0.00 39.86 3.56
20 21 0.914644 CTCTGAGGAGGGGAATTGCA 59.085 55.000 0.00 0.00 36.03 4.08
21 22 0.914644 TCTGAGGAGGGGAATTGCAG 59.085 55.000 0.00 0.00 0.00 4.41
22 23 0.914644 CTGAGGAGGGGAATTGCAGA 59.085 55.000 0.00 0.00 0.00 4.26
23 24 0.914644 TGAGGAGGGGAATTGCAGAG 59.085 55.000 0.00 0.00 0.00 3.35
24 25 0.182299 GAGGAGGGGAATTGCAGAGG 59.818 60.000 0.00 0.00 0.00 3.69
25 26 0.253347 AGGAGGGGAATTGCAGAGGA 60.253 55.000 0.00 0.00 0.00 3.71
26 27 0.625849 GGAGGGGAATTGCAGAGGAA 59.374 55.000 0.00 0.00 0.00 3.36
27 28 1.409381 GGAGGGGAATTGCAGAGGAAG 60.409 57.143 0.00 0.00 0.00 3.46
28 29 0.627986 AGGGGAATTGCAGAGGAAGG 59.372 55.000 0.00 0.00 0.00 3.46
29 30 0.396278 GGGGAATTGCAGAGGAAGGG 60.396 60.000 0.00 0.00 0.00 3.95
30 31 0.396278 GGGAATTGCAGAGGAAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
31 32 0.625849 GGAATTGCAGAGGAAGGGGA 59.374 55.000 0.00 0.00 0.00 4.81
32 33 1.216427 GGAATTGCAGAGGAAGGGGAT 59.784 52.381 0.00 0.00 0.00 3.85
33 34 2.443255 GGAATTGCAGAGGAAGGGGATA 59.557 50.000 0.00 0.00 0.00 2.59
34 35 3.497584 GGAATTGCAGAGGAAGGGGATAG 60.498 52.174 0.00 0.00 0.00 2.08
35 36 2.568546 TTGCAGAGGAAGGGGATAGA 57.431 50.000 0.00 0.00 0.00 1.98
36 37 2.568546 TGCAGAGGAAGGGGATAGAA 57.431 50.000 0.00 0.00 0.00 2.10
37 38 2.119495 TGCAGAGGAAGGGGATAGAAC 58.881 52.381 0.00 0.00 0.00 3.01
38 39 2.293184 TGCAGAGGAAGGGGATAGAACT 60.293 50.000 0.00 0.00 0.00 3.01
39 40 2.103941 GCAGAGGAAGGGGATAGAACTG 59.896 54.545 0.00 0.00 0.00 3.16
40 41 3.647636 CAGAGGAAGGGGATAGAACTGA 58.352 50.000 0.00 0.00 0.00 3.41
41 42 3.386402 CAGAGGAAGGGGATAGAACTGAC 59.614 52.174 0.00 0.00 0.00 3.51
42 43 3.012959 AGAGGAAGGGGATAGAACTGACA 59.987 47.826 0.00 0.00 0.00 3.58
43 44 3.970640 GAGGAAGGGGATAGAACTGACAT 59.029 47.826 0.00 0.00 0.00 3.06
44 45 3.713764 AGGAAGGGGATAGAACTGACATG 59.286 47.826 0.00 0.00 0.00 3.21
45 46 3.456277 GGAAGGGGATAGAACTGACATGT 59.544 47.826 0.00 0.00 0.00 3.21
46 47 4.446371 GAAGGGGATAGAACTGACATGTG 58.554 47.826 1.15 0.00 0.00 3.21
47 48 2.774234 AGGGGATAGAACTGACATGTGG 59.226 50.000 1.15 0.00 0.00 4.17
48 49 2.158755 GGGGATAGAACTGACATGTGGG 60.159 54.545 1.15 0.00 0.00 4.61
49 50 2.565841 GGATAGAACTGACATGTGGGC 58.434 52.381 1.15 0.00 0.00 5.36
50 51 2.565841 GATAGAACTGACATGTGGGCC 58.434 52.381 1.15 0.00 0.00 5.80
51 52 0.618458 TAGAACTGACATGTGGGCCC 59.382 55.000 17.59 17.59 0.00 5.80
52 53 1.678970 GAACTGACATGTGGGCCCC 60.679 63.158 22.27 11.72 0.00 5.80
53 54 2.424842 GAACTGACATGTGGGCCCCA 62.425 60.000 22.27 17.75 0.00 4.96
62 63 4.854587 TGGGCCCCACATGTTAAC 57.145 55.556 22.27 0.00 0.00 2.01
63 64 1.303724 TGGGCCCCACATGTTAACG 60.304 57.895 22.27 0.00 0.00 3.18
64 65 2.049767 GGGCCCCACATGTTAACGG 61.050 63.158 12.23 0.00 0.00 4.44
65 66 1.303806 GGCCCCACATGTTAACGGT 60.304 57.895 0.00 0.00 0.00 4.83
66 67 1.310216 GGCCCCACATGTTAACGGTC 61.310 60.000 0.00 0.00 0.00 4.79
67 68 0.606944 GCCCCACATGTTAACGGTCA 60.607 55.000 0.00 0.00 0.00 4.02
68 69 1.898902 CCCCACATGTTAACGGTCAA 58.101 50.000 0.00 0.00 0.00 3.18
69 70 2.231529 CCCCACATGTTAACGGTCAAA 58.768 47.619 0.00 0.00 0.00 2.69
70 71 2.227865 CCCCACATGTTAACGGTCAAAG 59.772 50.000 0.00 0.00 0.00 2.77
71 72 2.882137 CCCACATGTTAACGGTCAAAGT 59.118 45.455 0.00 0.00 0.00 2.66
72 73 3.316868 CCCACATGTTAACGGTCAAAGTT 59.683 43.478 0.00 0.00 35.75 2.66
73 74 4.515944 CCCACATGTTAACGGTCAAAGTTA 59.484 41.667 0.00 0.00 33.42 2.24
74 75 5.008811 CCCACATGTTAACGGTCAAAGTTAA 59.991 40.000 0.00 0.00 40.47 2.01
79 80 4.792528 TTAACGGTCAAAGTTAACGGTG 57.207 40.909 0.00 2.70 38.62 4.94
80 81 0.939419 ACGGTCAAAGTTAACGGTGC 59.061 50.000 0.00 0.00 0.00 5.01
81 82 1.223187 CGGTCAAAGTTAACGGTGCT 58.777 50.000 0.00 0.00 0.00 4.40
82 83 1.070175 CGGTCAAAGTTAACGGTGCTG 60.070 52.381 0.00 1.39 0.00 4.41
83 84 2.215196 GGTCAAAGTTAACGGTGCTGA 58.785 47.619 0.00 0.00 0.00 4.26
84 85 2.032290 GGTCAAAGTTAACGGTGCTGAC 60.032 50.000 14.69 14.69 0.00 3.51
85 86 2.870411 GTCAAAGTTAACGGTGCTGACT 59.130 45.455 15.29 0.00 31.25 3.41
86 87 3.311596 GTCAAAGTTAACGGTGCTGACTT 59.688 43.478 15.29 0.00 32.33 3.01
87 88 3.942748 TCAAAGTTAACGGTGCTGACTTT 59.057 39.130 0.00 0.00 40.17 2.66
88 89 4.396790 TCAAAGTTAACGGTGCTGACTTTT 59.603 37.500 0.00 0.00 38.19 2.27
89 90 4.976224 AAGTTAACGGTGCTGACTTTTT 57.024 36.364 0.00 0.00 0.00 1.94
90 91 4.547406 AGTTAACGGTGCTGACTTTTTC 57.453 40.909 0.00 0.00 0.00 2.29
91 92 3.942748 AGTTAACGGTGCTGACTTTTTCA 59.057 39.130 0.00 0.00 0.00 2.69
101 102 0.875059 GACTTTTTCAGTCCTGGCGG 59.125 55.000 0.00 0.00 45.84 6.13
102 103 0.472471 ACTTTTTCAGTCCTGGCGGA 59.528 50.000 0.00 0.00 36.83 5.54
103 104 1.073923 ACTTTTTCAGTCCTGGCGGAT 59.926 47.619 0.00 0.00 42.43 4.18
104 105 1.470098 CTTTTTCAGTCCTGGCGGATG 59.530 52.381 0.00 0.00 42.43 3.51
105 106 0.322456 TTTTCAGTCCTGGCGGATGG 60.322 55.000 0.00 0.00 42.43 3.51
106 107 2.196997 TTTCAGTCCTGGCGGATGGG 62.197 60.000 0.00 0.00 42.43 4.00
107 108 4.864334 CAGTCCTGGCGGATGGGC 62.864 72.222 0.00 0.00 42.43 5.36
115 116 4.864334 GCGGATGGGCCCAGTCTG 62.864 72.222 31.97 28.60 0.00 3.51
116 117 3.402681 CGGATGGGCCCAGTCTGT 61.403 66.667 31.97 13.59 0.00 3.41
117 118 2.592308 GGATGGGCCCAGTCTGTC 59.408 66.667 31.97 21.88 0.00 3.51
118 119 2.300967 GGATGGGCCCAGTCTGTCA 61.301 63.158 31.97 2.97 0.00 3.58
119 120 1.639635 GGATGGGCCCAGTCTGTCAT 61.640 60.000 31.97 10.87 0.00 3.06
120 121 1.131638 GATGGGCCCAGTCTGTCATA 58.868 55.000 31.97 1.14 0.00 2.15
121 122 1.490490 GATGGGCCCAGTCTGTCATAA 59.510 52.381 31.97 0.50 0.00 1.90
122 123 0.911769 TGGGCCCAGTCTGTCATAAG 59.088 55.000 24.45 0.00 0.00 1.73
123 124 0.464554 GGGCCCAGTCTGTCATAAGC 60.465 60.000 19.95 0.00 0.00 3.09
124 125 0.811616 GGCCCAGTCTGTCATAAGCG 60.812 60.000 0.00 0.00 0.00 4.68
125 126 1.432270 GCCCAGTCTGTCATAAGCGC 61.432 60.000 0.00 0.00 0.00 5.92
126 127 1.148157 CCCAGTCTGTCATAAGCGCG 61.148 60.000 0.00 0.00 0.00 6.86
127 128 0.458543 CCAGTCTGTCATAAGCGCGT 60.459 55.000 8.43 0.00 0.00 6.01
128 129 1.350193 CAGTCTGTCATAAGCGCGTT 58.650 50.000 8.43 0.00 0.00 4.84
129 130 1.726791 CAGTCTGTCATAAGCGCGTTT 59.273 47.619 13.97 13.97 0.00 3.60
130 131 2.921121 CAGTCTGTCATAAGCGCGTTTA 59.079 45.455 17.79 17.79 0.00 2.01
131 132 3.366724 CAGTCTGTCATAAGCGCGTTTAA 59.633 43.478 19.29 1.05 0.00 1.52
132 133 3.991773 AGTCTGTCATAAGCGCGTTTAAA 59.008 39.130 19.29 8.14 0.00 1.52
133 134 4.449743 AGTCTGTCATAAGCGCGTTTAAAA 59.550 37.500 19.29 7.79 0.00 1.52
134 135 5.121768 AGTCTGTCATAAGCGCGTTTAAAAT 59.878 36.000 19.29 1.37 0.00 1.82
135 136 5.225129 GTCTGTCATAAGCGCGTTTAAAATG 59.775 40.000 19.29 14.03 0.00 2.32
136 137 4.407818 TGTCATAAGCGCGTTTAAAATGG 58.592 39.130 19.29 7.29 0.00 3.16
137 138 4.154375 TGTCATAAGCGCGTTTAAAATGGA 59.846 37.500 19.29 9.28 0.00 3.41
138 139 4.494410 GTCATAAGCGCGTTTAAAATGGAC 59.506 41.667 19.29 15.95 0.00 4.02
139 140 4.154375 TCATAAGCGCGTTTAAAATGGACA 59.846 37.500 19.29 0.00 0.00 4.02
140 141 3.357166 AAGCGCGTTTAAAATGGACAA 57.643 38.095 6.35 0.00 0.00 3.18
141 142 3.569250 AGCGCGTTTAAAATGGACAAT 57.431 38.095 8.43 0.00 0.00 2.71
142 143 3.498082 AGCGCGTTTAAAATGGACAATC 58.502 40.909 8.43 0.00 0.00 2.67
143 144 2.275253 GCGCGTTTAAAATGGACAATCG 59.725 45.455 8.43 0.00 0.00 3.34
144 145 2.843643 CGCGTTTAAAATGGACAATCGG 59.156 45.455 0.00 0.00 0.00 4.18
145 146 3.668491 CGCGTTTAAAATGGACAATCGGT 60.668 43.478 0.00 0.00 0.00 4.69
146 147 3.849708 GCGTTTAAAATGGACAATCGGTC 59.150 43.478 0.00 0.00 46.20 4.79
158 159 4.669318 GACAATCGGTCGATTTAGAGACA 58.331 43.478 14.89 0.00 42.30 3.41
159 160 5.263968 ACAATCGGTCGATTTAGAGACAT 57.736 39.130 14.89 0.00 42.30 3.06
160 161 5.043903 ACAATCGGTCGATTTAGAGACATG 58.956 41.667 14.89 5.37 42.30 3.21
161 162 3.710326 TCGGTCGATTTAGAGACATGG 57.290 47.619 0.00 0.00 39.01 3.66
162 163 3.021695 TCGGTCGATTTAGAGACATGGT 58.978 45.455 0.00 0.00 39.01 3.55
163 164 4.201657 TCGGTCGATTTAGAGACATGGTA 58.798 43.478 0.00 0.00 39.01 3.25
164 165 4.275196 TCGGTCGATTTAGAGACATGGTAG 59.725 45.833 0.00 0.00 39.01 3.18
165 166 4.036498 CGGTCGATTTAGAGACATGGTAGT 59.964 45.833 0.00 0.00 39.01 2.73
166 167 5.450137 CGGTCGATTTAGAGACATGGTAGTT 60.450 44.000 0.00 0.00 39.01 2.24
167 168 6.338937 GGTCGATTTAGAGACATGGTAGTTT 58.661 40.000 0.00 0.00 39.01 2.66
168 169 6.817140 GGTCGATTTAGAGACATGGTAGTTTT 59.183 38.462 0.00 0.00 39.01 2.43
169 170 7.333672 GGTCGATTTAGAGACATGGTAGTTTTT 59.666 37.037 0.00 0.00 39.01 1.94
170 171 9.362539 GTCGATTTAGAGACATGGTAGTTTTTA 57.637 33.333 0.00 0.00 37.34 1.52
171 172 9.582431 TCGATTTAGAGACATGGTAGTTTTTAG 57.418 33.333 0.00 0.00 0.00 1.85
172 173 9.367444 CGATTTAGAGACATGGTAGTTTTTAGT 57.633 33.333 0.00 0.00 0.00 2.24
178 179 9.256228 AGAGACATGGTAGTTTTTAGTCATAGA 57.744 33.333 0.00 0.00 0.00 1.98
211 212 7.961325 AAAAATGATAGTTTTCGGCACAAAT 57.039 28.000 0.00 0.00 31.29 2.32
212 213 7.961325 AAAATGATAGTTTTCGGCACAAATT 57.039 28.000 0.00 0.00 0.00 1.82
213 214 7.581011 AAATGATAGTTTTCGGCACAAATTC 57.419 32.000 0.00 0.00 0.00 2.17
214 215 4.717991 TGATAGTTTTCGGCACAAATTCG 58.282 39.130 0.00 0.00 0.00 3.34
215 216 4.214545 TGATAGTTTTCGGCACAAATTCGT 59.785 37.500 0.00 0.00 0.00 3.85
216 217 5.408909 TGATAGTTTTCGGCACAAATTCGTA 59.591 36.000 0.00 0.00 0.00 3.43
217 218 4.555348 AGTTTTCGGCACAAATTCGTAA 57.445 36.364 0.00 0.00 0.00 3.18
218 219 4.922719 AGTTTTCGGCACAAATTCGTAAA 58.077 34.783 0.00 0.00 0.00 2.01
219 220 4.973663 AGTTTTCGGCACAAATTCGTAAAG 59.026 37.500 0.00 0.00 0.00 1.85
220 221 4.555348 TTTCGGCACAAATTCGTAAAGT 57.445 36.364 0.00 0.00 0.00 2.66
221 222 3.529634 TCGGCACAAATTCGTAAAGTG 57.470 42.857 0.00 0.00 0.00 3.16
222 223 2.224549 TCGGCACAAATTCGTAAAGTGG 59.775 45.455 0.00 0.00 0.00 4.00
223 224 2.031508 CGGCACAAATTCGTAAAGTGGT 60.032 45.455 0.00 0.00 0.00 4.16
224 225 3.186817 CGGCACAAATTCGTAAAGTGGTA 59.813 43.478 0.00 0.00 0.00 3.25
225 226 4.668177 CGGCACAAATTCGTAAAGTGGTAG 60.668 45.833 0.00 0.00 0.00 3.18
226 227 4.214758 GGCACAAATTCGTAAAGTGGTAGT 59.785 41.667 0.00 0.00 0.00 2.73
227 228 5.278120 GGCACAAATTCGTAAAGTGGTAGTT 60.278 40.000 0.00 0.00 0.00 2.24
228 229 6.203647 GCACAAATTCGTAAAGTGGTAGTTT 58.796 36.000 0.00 0.00 0.00 2.66
229 230 6.141685 GCACAAATTCGTAAAGTGGTAGTTTG 59.858 38.462 0.00 0.00 0.00 2.93
230 231 7.190871 CACAAATTCGTAAAGTGGTAGTTTGT 58.809 34.615 0.00 0.00 37.64 2.83
231 232 7.165154 CACAAATTCGTAAAGTGGTAGTTTGTG 59.835 37.037 11.23 11.23 43.80 3.33
232 233 5.934935 ATTCGTAAAGTGGTAGTTTGTGG 57.065 39.130 0.00 0.00 0.00 4.17
233 234 3.731089 TCGTAAAGTGGTAGTTTGTGGG 58.269 45.455 0.00 0.00 0.00 4.61
234 235 2.224784 CGTAAAGTGGTAGTTTGTGGGC 59.775 50.000 0.00 0.00 0.00 5.36
235 236 2.445682 AAAGTGGTAGTTTGTGGGCA 57.554 45.000 0.00 0.00 0.00 5.36
236 237 1.687563 AAGTGGTAGTTTGTGGGCAC 58.312 50.000 0.00 0.00 0.00 5.01
237 238 0.534203 AGTGGTAGTTTGTGGGCACG 60.534 55.000 0.00 0.00 0.00 5.34
238 239 1.228003 TGGTAGTTTGTGGGCACGG 60.228 57.895 0.00 0.00 0.00 4.94
239 240 1.071814 GGTAGTTTGTGGGCACGGA 59.928 57.895 0.00 0.00 0.00 4.69
240 241 0.322187 GGTAGTTTGTGGGCACGGAT 60.322 55.000 0.00 0.00 0.00 4.18
241 242 1.084289 GTAGTTTGTGGGCACGGATC 58.916 55.000 0.00 0.00 0.00 3.36
242 243 0.035820 TAGTTTGTGGGCACGGATCC 60.036 55.000 0.00 0.00 0.00 3.36
243 244 1.602323 GTTTGTGGGCACGGATCCA 60.602 57.895 13.41 0.00 0.00 3.41
246 247 4.077184 GTGGGCACGGATCCACGA 62.077 66.667 13.41 0.00 43.11 4.35
247 248 3.315140 TGGGCACGGATCCACGAA 61.315 61.111 13.41 0.00 37.61 3.85
248 249 2.189521 GGGCACGGATCCACGAAT 59.810 61.111 13.41 0.00 37.61 3.34
249 250 1.451387 GGGCACGGATCCACGAATT 60.451 57.895 13.41 0.00 37.61 2.17
250 251 0.179067 GGGCACGGATCCACGAATTA 60.179 55.000 13.41 0.00 37.61 1.40
251 252 1.542547 GGGCACGGATCCACGAATTAT 60.543 52.381 13.41 0.00 37.61 1.28
252 253 1.531149 GGCACGGATCCACGAATTATG 59.469 52.381 13.41 0.00 37.61 1.90
253 254 1.531149 GCACGGATCCACGAATTATGG 59.469 52.381 13.41 2.30 38.71 2.74
254 255 2.833794 CACGGATCCACGAATTATGGT 58.166 47.619 13.41 0.00 38.47 3.55
255 256 3.800949 GCACGGATCCACGAATTATGGTA 60.801 47.826 13.41 0.00 38.47 3.25
256 257 3.987868 CACGGATCCACGAATTATGGTAG 59.012 47.826 13.41 0.00 38.47 3.18
257 258 3.640029 ACGGATCCACGAATTATGGTAGT 59.360 43.478 13.41 0.00 38.47 2.73
258 259 4.100498 ACGGATCCACGAATTATGGTAGTT 59.900 41.667 13.41 0.00 38.47 2.24
259 260 5.054477 CGGATCCACGAATTATGGTAGTTT 58.946 41.667 13.41 0.00 38.47 2.66
260 261 5.526111 CGGATCCACGAATTATGGTAGTTTT 59.474 40.000 13.41 0.00 38.47 2.43
261 262 6.037830 CGGATCCACGAATTATGGTAGTTTTT 59.962 38.462 13.41 0.00 38.47 1.94
262 263 7.193595 GGATCCACGAATTATGGTAGTTTTTG 58.806 38.462 6.95 0.00 38.47 2.44
263 264 6.503589 TCCACGAATTATGGTAGTTTTTGG 57.496 37.500 7.85 0.00 38.47 3.28
264 265 6.005198 TCCACGAATTATGGTAGTTTTTGGT 58.995 36.000 7.85 0.00 38.47 3.67
265 266 6.490721 TCCACGAATTATGGTAGTTTTTGGTT 59.509 34.615 7.85 0.00 38.47 3.67
266 267 7.664731 TCCACGAATTATGGTAGTTTTTGGTTA 59.335 33.333 7.85 0.00 38.47 2.85
267 268 8.298140 CCACGAATTATGGTAGTTTTTGGTTAA 58.702 33.333 0.00 0.00 32.08 2.01
268 269 9.680315 CACGAATTATGGTAGTTTTTGGTTAAA 57.320 29.630 0.00 0.00 0.00 1.52
293 294 2.114506 TCCCCCTCTTCTCCTTTCTCTT 59.885 50.000 0.00 0.00 0.00 2.85
303 304 7.175797 TCTTCTCCTTTCTCTTATTTTTCCCC 58.824 38.462 0.00 0.00 0.00 4.81
343 344 4.103785 CCCCTCTACCATGATCACTTGATT 59.896 45.833 0.00 0.00 34.37 2.57
358 359 7.649533 TCACTTGATTGATGCCATATTTTCT 57.350 32.000 0.00 0.00 0.00 2.52
377 378 7.686438 TTTTCTCATGTGCTATCTGCTAAAA 57.314 32.000 0.00 0.00 43.37 1.52
466 468 5.376854 AATACTTTGACTGTGTGCATTCC 57.623 39.130 0.00 0.00 0.00 3.01
521 523 5.925969 TGGTGTACATATCGAATGCATGTAG 59.074 40.000 0.00 0.00 36.19 2.74
523 525 5.348724 GTGTACATATCGAATGCATGTAGGG 59.651 44.000 0.00 0.00 36.19 3.53
613 649 0.919289 AGTACCCTTGGACCCCCATG 60.919 60.000 0.00 0.00 43.12 3.66
623 659 2.438434 CCCCCATGTGGCGTCTTC 60.438 66.667 0.00 0.00 0.00 2.87
651 687 2.235155 TGAAATGTCTAGCCGGCACTTA 59.765 45.455 31.54 11.83 0.00 2.24
715 751 0.174162 GGCTGCAACTAATTGGCCAG 59.826 55.000 5.11 0.00 40.81 4.85
784 820 2.880268 GTGGATGATGAATGATTGCCGA 59.120 45.455 0.00 0.00 0.00 5.54
785 821 3.504906 GTGGATGATGAATGATTGCCGAT 59.495 43.478 0.00 0.00 0.00 4.18
786 822 3.754850 TGGATGATGAATGATTGCCGATC 59.245 43.478 0.00 0.00 35.21 3.69
787 823 3.181513 GGATGATGAATGATTGCCGATCG 60.182 47.826 8.51 8.51 37.60 3.69
837 877 0.606401 TGCCAAGCTGTACTCCTTGC 60.606 55.000 16.00 12.94 37.66 4.01
855 895 0.886490 GCCTCGTATTCCTGGCATGG 60.886 60.000 0.00 0.00 44.34 3.66
859 899 2.628178 CTCGTATTCCTGGCATGGTCTA 59.372 50.000 0.00 0.00 0.00 2.59
862 902 3.181465 CGTATTCCTGGCATGGTCTAGTT 60.181 47.826 0.00 0.00 0.00 2.24
863 903 2.787473 TTCCTGGCATGGTCTAGTTG 57.213 50.000 0.00 0.00 0.00 3.16
864 904 1.656587 TCCTGGCATGGTCTAGTTGT 58.343 50.000 0.00 0.00 0.00 3.32
865 905 2.827755 TCCTGGCATGGTCTAGTTGTA 58.172 47.619 0.00 0.00 0.00 2.41
875 927 5.148651 TGGTCTAGTTGTAAGAAGAAGCC 57.851 43.478 0.00 0.00 0.00 4.35
932 984 1.269621 ACCACTCACCGTTTCTCTTCG 60.270 52.381 0.00 0.00 0.00 3.79
951 1003 5.585445 TCTTCGAAAGTCTAGCTACCTACAG 59.415 44.000 0.00 0.00 0.00 2.74
952 1004 4.841422 TCGAAAGTCTAGCTACCTACAGT 58.159 43.478 0.00 0.00 0.00 3.55
970 1022 6.606395 CCTACAGTAGTCCAACCTAAGTGTAT 59.394 42.308 6.84 0.00 0.00 2.29
990 1042 6.762187 GTGTATAGGAGAAGGAAAAGCTTACC 59.238 42.308 12.84 12.84 0.00 2.85
992 1044 4.022413 AGGAGAAGGAAAAGCTTACCAC 57.978 45.455 19.97 14.43 0.00 4.16
993 1045 3.653352 AGGAGAAGGAAAAGCTTACCACT 59.347 43.478 19.97 17.62 0.00 4.00
994 1046 3.753797 GGAGAAGGAAAAGCTTACCACTG 59.246 47.826 19.97 0.00 0.00 3.66
1016 1070 0.322008 GATATGGGTAGCTGCCTGCC 60.322 60.000 21.02 4.68 44.23 4.85
1017 1071 1.061905 ATATGGGTAGCTGCCTGCCA 61.062 55.000 21.02 10.68 44.81 4.92
1018 1072 1.061905 TATGGGTAGCTGCCTGCCAT 61.062 55.000 21.02 16.87 44.81 4.40
1023 1077 0.465097 GTAGCTGCCTGCCATCATGT 60.465 55.000 0.00 0.00 44.23 3.21
1265 1322 9.519191 TCATCTCAACCTTTCTTTCATATTTCA 57.481 29.630 0.00 0.00 0.00 2.69
1270 1327 9.965824 TCAACCTTTCTTTCATATTTCAAACTC 57.034 29.630 0.00 0.00 0.00 3.01
1271 1328 9.748708 CAACCTTTCTTTCATATTTCAAACTCA 57.251 29.630 0.00 0.00 0.00 3.41
1308 1368 6.062434 TGGTATTTAAACTTGACGGTGTTG 57.938 37.500 0.00 0.00 0.00 3.33
1315 1375 0.304705 CTTGACGGTGTTGTCTGCAC 59.695 55.000 0.00 0.00 39.64 4.57
1345 1405 7.795047 TGAGCTTGAATACCTTGATCTATCAA 58.205 34.615 5.34 5.34 43.94 2.57
1369 1429 1.040646 CTATCCCTGTTCGCTAGCCA 58.959 55.000 9.66 0.02 0.00 4.75
1400 1462 5.670792 ACGTATGTACTCCAAATTCTCCA 57.329 39.130 0.00 0.00 0.00 3.86
1406 1469 9.788960 GTATGTACTCCAAATTCTCCATTTTTC 57.211 33.333 0.00 0.00 32.24 2.29
1453 1518 4.857588 ACTTCTTATTCTCGTTGCTGTACG 59.142 41.667 0.00 0.00 42.68 3.67
1465 1530 4.159857 GTTGCTGTACGAACAAAAACACA 58.840 39.130 0.00 0.00 34.49 3.72
1531 1596 1.303898 TACAATGCATTGGGAGGGGA 58.696 50.000 35.85 14.15 41.96 4.81
1533 1598 1.075748 AATGCATTGGGAGGGGAGC 60.076 57.895 12.09 0.00 0.00 4.70
1585 1650 3.650139 TGGAAGTTTTAGCTCTCGACAC 58.350 45.455 0.00 0.00 0.00 3.67
1590 1655 5.708877 AGTTTTAGCTCTCGACACTAACT 57.291 39.130 0.00 0.00 0.00 2.24
1620 1685 2.328099 GGTCTTCCAAGCGCAGGTG 61.328 63.158 11.47 4.23 39.47 4.00
1625 1698 3.730761 CCAAGCGCAGGTGCAGAC 61.731 66.667 11.47 0.00 42.21 3.51
1626 1699 3.730761 CAAGCGCAGGTGCAGACC 61.731 66.667 11.47 0.00 43.52 3.85
1745 1848 3.309682 TCAGAAACTTGCGACAACTGAAG 59.690 43.478 0.00 0.00 31.51 3.02
1822 1925 7.129038 TCCTCACCTAAAGTTCCTAGATCTCTA 59.871 40.741 0.00 0.00 0.00 2.43
1832 1935 8.472007 AGTTCCTAGATCTCTACAATAACAGG 57.528 38.462 0.00 0.00 0.00 4.00
1863 1966 5.280676 GGGCATATTCCAATAGACTCATCCA 60.281 44.000 0.00 0.00 0.00 3.41
1867 3629 5.919348 ATTCCAATAGACTCATCCATGGT 57.081 39.130 12.58 0.00 0.00 3.55
1981 3749 5.126067 AGGGATTTCATGTTTCATACCTCG 58.874 41.667 0.00 0.00 0.00 4.63
2116 3904 3.701205 TGCACTTCCTCAGCTGAATTA 57.299 42.857 18.85 2.92 0.00 1.40
2264 4067 7.201644 CGAGGTACACAATGAGCATTTAATTCT 60.202 37.037 0.00 0.00 0.00 2.40
2278 4081 7.930865 AGCATTTAATTCTGACCTAGATCAGTC 59.069 37.037 14.04 2.07 45.41 3.51
2358 4172 8.095937 ACTAAAAATCTTCAAAACCTACGAGG 57.904 34.615 0.00 0.00 42.49 4.63
2557 4446 7.279615 TGAGTGGTAGACTTTCTTTCATTTCA 58.720 34.615 0.00 0.00 33.83 2.69
2738 4627 4.792125 GCACACAGCGTCGTTTAC 57.208 55.556 0.00 0.00 0.00 2.01
2884 4774 3.737559 TGGCATACCCAATCTTCACTT 57.262 42.857 0.00 0.00 41.82 3.16
3728 7016 4.136796 TCTGCCAGCATGTATTGGTAATC 58.863 43.478 12.55 0.52 36.81 1.75
3912 7251 4.672542 CGACTTATCTGCAAACATGTTGGG 60.673 45.833 12.82 8.94 0.00 4.12
4066 7405 2.414994 ATGAGCTGAGTGGACCAATG 57.585 50.000 0.00 0.00 0.00 2.82
4212 7552 3.813166 ACCAACCTTCACAACATTACTCG 59.187 43.478 0.00 0.00 0.00 4.18
4410 9004 1.153958 GCTTGAGCCAAACATCCGC 60.154 57.895 0.00 0.00 34.31 5.54
4891 11617 1.393603 ATGCTCGAGCTGTAGTGCTA 58.606 50.000 35.27 14.55 44.17 3.49
4902 11637 6.310467 CGAGCTGTAGTGCTAGAACAATTAAA 59.690 38.462 3.00 0.00 44.17 1.52
4903 11638 7.148639 CGAGCTGTAGTGCTAGAACAATTAAAA 60.149 37.037 3.00 0.00 44.17 1.52
4904 11639 8.391075 AGCTGTAGTGCTAGAACAATTAAAAA 57.609 30.769 3.00 0.00 42.10 1.94
4905 11640 9.014297 AGCTGTAGTGCTAGAACAATTAAAAAT 57.986 29.630 3.00 0.00 42.10 1.82
4906 11641 9.626045 GCTGTAGTGCTAGAACAATTAAAAATT 57.374 29.630 3.00 0.00 0.00 1.82
4908 11643 9.405587 TGTAGTGCTAGAACAATTAAAAATTGC 57.594 29.630 3.00 0.00 32.55 3.56
4909 11644 9.405587 GTAGTGCTAGAACAATTAAAAATTGCA 57.594 29.630 3.00 1.64 32.55 4.08
4910 11645 8.885494 AGTGCTAGAACAATTAAAAATTGCAA 57.115 26.923 0.00 0.00 32.55 4.08
5025 12648 7.948278 TTCTACTTTTTCTTGCTGAGAGTAC 57.052 36.000 0.00 0.00 35.37 2.73
5168 12833 6.114767 TCATGCATTCATACTAGCAAAGTCA 58.885 36.000 0.00 0.00 40.76 3.41
5384 14155 2.165845 CCTAGTACTGAAACCCACCTCG 59.834 54.545 5.39 0.00 0.00 4.63
5405 14274 8.857098 ACCTCGAGATATTATAGCTTTTACACA 58.143 33.333 15.71 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.914644 CTCTGCAATTCCCCTCCTCA 59.085 55.000 0.00 0.00 0.00 3.86
5 6 0.182299 CCTCTGCAATTCCCCTCCTC 59.818 60.000 0.00 0.00 0.00 3.71
6 7 0.253347 TCCTCTGCAATTCCCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
7 8 0.625849 TTCCTCTGCAATTCCCCTCC 59.374 55.000 0.00 0.00 0.00 4.30
8 9 1.409381 CCTTCCTCTGCAATTCCCCTC 60.409 57.143 0.00 0.00 0.00 4.30
9 10 0.627986 CCTTCCTCTGCAATTCCCCT 59.372 55.000 0.00 0.00 0.00 4.79
10 11 0.396278 CCCTTCCTCTGCAATTCCCC 60.396 60.000 0.00 0.00 0.00 4.81
11 12 0.396278 CCCCTTCCTCTGCAATTCCC 60.396 60.000 0.00 0.00 0.00 3.97
13 14 2.744352 ATCCCCTTCCTCTGCAATTC 57.256 50.000 0.00 0.00 0.00 2.17
14 15 3.397527 TCTATCCCCTTCCTCTGCAATT 58.602 45.455 0.00 0.00 0.00 2.32
15 16 3.066208 TCTATCCCCTTCCTCTGCAAT 57.934 47.619 0.00 0.00 0.00 3.56
16 17 2.505819 GTTCTATCCCCTTCCTCTGCAA 59.494 50.000 0.00 0.00 0.00 4.08
17 18 2.119495 GTTCTATCCCCTTCCTCTGCA 58.881 52.381 0.00 0.00 0.00 4.41
18 19 2.103941 CAGTTCTATCCCCTTCCTCTGC 59.896 54.545 0.00 0.00 0.00 4.26
19 20 3.386402 GTCAGTTCTATCCCCTTCCTCTG 59.614 52.174 0.00 0.00 0.00 3.35
20 21 3.012959 TGTCAGTTCTATCCCCTTCCTCT 59.987 47.826 0.00 0.00 0.00 3.69
21 22 3.375699 TGTCAGTTCTATCCCCTTCCTC 58.624 50.000 0.00 0.00 0.00 3.71
22 23 3.491766 TGTCAGTTCTATCCCCTTCCT 57.508 47.619 0.00 0.00 0.00 3.36
23 24 3.456277 ACATGTCAGTTCTATCCCCTTCC 59.544 47.826 0.00 0.00 0.00 3.46
24 25 4.446371 CACATGTCAGTTCTATCCCCTTC 58.554 47.826 0.00 0.00 0.00 3.46
25 26 3.200825 CCACATGTCAGTTCTATCCCCTT 59.799 47.826 0.00 0.00 0.00 3.95
26 27 2.774234 CCACATGTCAGTTCTATCCCCT 59.226 50.000 0.00 0.00 0.00 4.79
27 28 2.158755 CCCACATGTCAGTTCTATCCCC 60.159 54.545 0.00 0.00 0.00 4.81
28 29 2.746472 GCCCACATGTCAGTTCTATCCC 60.746 54.545 0.00 0.00 0.00 3.85
29 30 2.565841 GCCCACATGTCAGTTCTATCC 58.434 52.381 0.00 0.00 0.00 2.59
30 31 2.565841 GGCCCACATGTCAGTTCTATC 58.434 52.381 0.00 0.00 0.00 2.08
31 32 1.212935 GGGCCCACATGTCAGTTCTAT 59.787 52.381 19.95 0.00 0.00 1.98
32 33 0.618458 GGGCCCACATGTCAGTTCTA 59.382 55.000 19.95 0.00 0.00 2.10
33 34 1.380302 GGGCCCACATGTCAGTTCT 59.620 57.895 19.95 0.00 0.00 3.01
34 35 1.678970 GGGGCCCACATGTCAGTTC 60.679 63.158 26.86 0.00 0.00 3.01
35 36 2.440599 GGGGCCCACATGTCAGTT 59.559 61.111 26.86 0.00 0.00 3.16
36 37 2.858476 TGGGGCCCACATGTCAGT 60.858 61.111 24.76 0.00 0.00 3.41
45 46 1.303724 CGTTAACATGTGGGGCCCA 60.304 57.895 24.76 24.76 0.00 5.36
46 47 2.049767 CCGTTAACATGTGGGGCCC 61.050 63.158 18.17 18.17 0.00 5.80
47 48 1.303806 ACCGTTAACATGTGGGGCC 60.304 57.895 0.00 0.00 0.00 5.80
48 49 0.606944 TGACCGTTAACATGTGGGGC 60.607 55.000 0.00 1.39 0.00 5.80
49 50 1.898902 TTGACCGTTAACATGTGGGG 58.101 50.000 0.00 0.87 0.00 4.96
50 51 2.882137 ACTTTGACCGTTAACATGTGGG 59.118 45.455 0.00 1.26 0.00 4.61
51 52 4.561735 AACTTTGACCGTTAACATGTGG 57.438 40.909 0.00 0.00 0.00 4.17
57 58 4.517287 CACCGTTAACTTTGACCGTTAAC 58.483 43.478 13.08 13.08 46.55 2.01
58 59 3.002144 GCACCGTTAACTTTGACCGTTAA 59.998 43.478 3.71 0.00 35.22 2.01
59 60 2.543430 GCACCGTTAACTTTGACCGTTA 59.457 45.455 3.71 0.00 0.00 3.18
60 61 1.331447 GCACCGTTAACTTTGACCGTT 59.669 47.619 3.71 0.00 0.00 4.44
61 62 0.939419 GCACCGTTAACTTTGACCGT 59.061 50.000 3.71 0.00 0.00 4.83
62 63 1.070175 CAGCACCGTTAACTTTGACCG 60.070 52.381 3.71 0.00 0.00 4.79
63 64 2.032290 GTCAGCACCGTTAACTTTGACC 60.032 50.000 3.71 0.00 0.00 4.02
64 65 2.870411 AGTCAGCACCGTTAACTTTGAC 59.130 45.455 3.71 9.57 35.04 3.18
65 66 3.188159 AGTCAGCACCGTTAACTTTGA 57.812 42.857 3.71 0.00 0.00 2.69
66 67 3.963383 AAGTCAGCACCGTTAACTTTG 57.037 42.857 3.71 1.67 0.00 2.77
67 68 4.976224 AAAAGTCAGCACCGTTAACTTT 57.024 36.364 3.71 0.00 40.79 2.66
68 69 4.396790 TGAAAAAGTCAGCACCGTTAACTT 59.603 37.500 3.71 0.00 0.00 2.66
69 70 3.942748 TGAAAAAGTCAGCACCGTTAACT 59.057 39.130 3.71 0.00 0.00 2.24
70 71 4.281525 TGAAAAAGTCAGCACCGTTAAC 57.718 40.909 0.00 0.00 0.00 2.01
83 84 0.472471 TCCGCCAGGACTGAAAAAGT 59.528 50.000 0.00 0.00 42.75 2.66
84 85 3.322514 TCCGCCAGGACTGAAAAAG 57.677 52.632 0.00 0.00 42.75 2.27
98 99 4.864334 CAGACTGGGCCCATCCGC 62.864 72.222 28.82 14.95 34.94 5.54
99 100 3.391665 GACAGACTGGGCCCATCCG 62.392 68.421 28.82 17.35 34.94 4.18
100 101 1.639635 ATGACAGACTGGGCCCATCC 61.640 60.000 28.82 20.09 0.00 3.51
101 102 1.131638 TATGACAGACTGGGCCCATC 58.868 55.000 28.82 23.63 0.00 3.51
102 103 1.492176 CTTATGACAGACTGGGCCCAT 59.508 52.381 28.82 16.16 0.00 4.00
103 104 0.911769 CTTATGACAGACTGGGCCCA 59.088 55.000 26.67 26.67 0.00 5.36
104 105 0.464554 GCTTATGACAGACTGGGCCC 60.465 60.000 17.59 17.59 0.00 5.80
105 106 0.811616 CGCTTATGACAGACTGGGCC 60.812 60.000 7.51 0.00 0.00 5.80
106 107 1.432270 GCGCTTATGACAGACTGGGC 61.432 60.000 7.51 0.00 0.00 5.36
107 108 1.148157 CGCGCTTATGACAGACTGGG 61.148 60.000 5.56 0.00 0.00 4.45
108 109 0.458543 ACGCGCTTATGACAGACTGG 60.459 55.000 5.73 0.00 0.00 4.00
109 110 1.350193 AACGCGCTTATGACAGACTG 58.650 50.000 5.73 0.00 0.00 3.51
110 111 2.080286 AAACGCGCTTATGACAGACT 57.920 45.000 5.73 0.00 0.00 3.24
111 112 3.984018 TTAAACGCGCTTATGACAGAC 57.016 42.857 5.73 0.00 0.00 3.51
112 113 4.994220 TTTTAAACGCGCTTATGACAGA 57.006 36.364 5.73 0.00 0.00 3.41
113 114 4.495472 CCATTTTAAACGCGCTTATGACAG 59.505 41.667 5.73 0.00 0.00 3.51
114 115 4.154375 TCCATTTTAAACGCGCTTATGACA 59.846 37.500 5.73 0.00 0.00 3.58
115 116 4.494410 GTCCATTTTAAACGCGCTTATGAC 59.506 41.667 5.73 3.68 0.00 3.06
116 117 4.154375 TGTCCATTTTAAACGCGCTTATGA 59.846 37.500 5.73 0.00 0.00 2.15
117 118 4.407818 TGTCCATTTTAAACGCGCTTATG 58.592 39.130 5.73 0.78 0.00 1.90
118 119 4.688511 TGTCCATTTTAAACGCGCTTAT 57.311 36.364 5.73 0.00 0.00 1.73
119 120 4.485024 TTGTCCATTTTAAACGCGCTTA 57.515 36.364 5.73 0.41 0.00 3.09
120 121 3.357166 TTGTCCATTTTAAACGCGCTT 57.643 38.095 5.73 1.77 0.00 4.68
121 122 3.498082 GATTGTCCATTTTAAACGCGCT 58.502 40.909 5.73 0.00 0.00 5.92
122 123 2.275253 CGATTGTCCATTTTAAACGCGC 59.725 45.455 5.73 0.00 0.00 6.86
123 124 2.843643 CCGATTGTCCATTTTAAACGCG 59.156 45.455 3.53 3.53 0.00 6.01
124 125 3.828786 ACCGATTGTCCATTTTAAACGC 58.171 40.909 0.00 0.00 0.00 4.84
125 126 4.085884 CGACCGATTGTCCATTTTAAACG 58.914 43.478 0.00 0.00 41.18 3.60
126 127 5.285798 TCGACCGATTGTCCATTTTAAAC 57.714 39.130 0.00 0.00 41.18 2.01
127 128 6.503589 AATCGACCGATTGTCCATTTTAAA 57.496 33.333 15.75 0.00 42.55 1.52
128 129 6.503589 AAATCGACCGATTGTCCATTTTAA 57.496 33.333 16.97 0.00 40.49 1.52
129 130 7.042950 TCTAAATCGACCGATTGTCCATTTTA 58.957 34.615 16.97 4.87 40.49 1.52
130 131 5.878116 TCTAAATCGACCGATTGTCCATTTT 59.122 36.000 16.97 4.03 40.49 1.82
131 132 5.424757 TCTAAATCGACCGATTGTCCATTT 58.575 37.500 16.97 4.27 44.00 2.32
132 133 5.018539 TCTAAATCGACCGATTGTCCATT 57.981 39.130 16.97 4.59 43.26 3.16
133 134 4.341235 TCTCTAAATCGACCGATTGTCCAT 59.659 41.667 16.97 5.22 43.26 3.41
134 135 3.697542 TCTCTAAATCGACCGATTGTCCA 59.302 43.478 16.97 4.29 43.26 4.02
135 136 4.043073 GTCTCTAAATCGACCGATTGTCC 58.957 47.826 16.97 1.52 43.26 4.02
136 137 4.669318 TGTCTCTAAATCGACCGATTGTC 58.331 43.478 16.97 4.94 43.26 3.18
137 138 4.713824 TGTCTCTAAATCGACCGATTGT 57.286 40.909 16.97 10.41 43.26 2.71
138 139 4.445718 CCATGTCTCTAAATCGACCGATTG 59.554 45.833 16.97 7.16 43.26 2.67
139 140 4.099573 ACCATGTCTCTAAATCGACCGATT 59.900 41.667 11.39 11.39 45.67 3.34
140 141 3.637229 ACCATGTCTCTAAATCGACCGAT 59.363 43.478 0.00 0.00 36.23 4.18
141 142 3.021695 ACCATGTCTCTAAATCGACCGA 58.978 45.455 0.00 0.00 0.00 4.69
142 143 3.438297 ACCATGTCTCTAAATCGACCG 57.562 47.619 0.00 0.00 0.00 4.79
143 144 5.517322 ACTACCATGTCTCTAAATCGACC 57.483 43.478 0.00 0.00 0.00 4.79
144 145 7.829378 AAAACTACCATGTCTCTAAATCGAC 57.171 36.000 0.00 0.00 0.00 4.20
145 146 9.582431 CTAAAAACTACCATGTCTCTAAATCGA 57.418 33.333 0.00 0.00 0.00 3.59
146 147 9.367444 ACTAAAAACTACCATGTCTCTAAATCG 57.633 33.333 0.00 0.00 0.00 3.34
152 153 9.256228 TCTATGACTAAAAACTACCATGTCTCT 57.744 33.333 0.00 0.00 0.00 3.10
187 188 7.961325 ATTTGTGCCGAAAACTATCATTTTT 57.039 28.000 0.00 0.00 31.90 1.94
188 189 7.148820 CGAATTTGTGCCGAAAACTATCATTTT 60.149 33.333 0.00 0.00 34.46 1.82
189 190 6.307800 CGAATTTGTGCCGAAAACTATCATTT 59.692 34.615 0.00 0.00 0.00 2.32
190 191 5.799936 CGAATTTGTGCCGAAAACTATCATT 59.200 36.000 0.00 0.00 0.00 2.57
191 192 5.106317 ACGAATTTGTGCCGAAAACTATCAT 60.106 36.000 0.00 0.00 0.00 2.45
192 193 4.214545 ACGAATTTGTGCCGAAAACTATCA 59.785 37.500 0.00 0.00 0.00 2.15
193 194 4.719040 ACGAATTTGTGCCGAAAACTATC 58.281 39.130 0.00 0.00 0.00 2.08
194 195 4.759516 ACGAATTTGTGCCGAAAACTAT 57.240 36.364 0.00 0.00 0.00 2.12
195 196 5.670149 TTACGAATTTGTGCCGAAAACTA 57.330 34.783 8.70 0.00 0.00 2.24
196 197 4.555348 TTACGAATTTGTGCCGAAAACT 57.445 36.364 8.70 0.00 0.00 2.66
197 198 4.736307 ACTTTACGAATTTGTGCCGAAAAC 59.264 37.500 8.70 0.00 0.00 2.43
198 199 4.735822 CACTTTACGAATTTGTGCCGAAAA 59.264 37.500 8.70 0.12 0.00 2.29
199 200 4.283678 CACTTTACGAATTTGTGCCGAAA 58.716 39.130 8.70 0.47 0.00 3.46
200 201 3.304123 CCACTTTACGAATTTGTGCCGAA 60.304 43.478 8.70 0.00 0.00 4.30
201 202 2.224549 CCACTTTACGAATTTGTGCCGA 59.775 45.455 8.70 0.00 0.00 5.54
202 203 2.031508 ACCACTTTACGAATTTGTGCCG 60.032 45.455 8.70 0.00 0.00 5.69
203 204 3.636282 ACCACTTTACGAATTTGTGCC 57.364 42.857 8.70 0.00 0.00 5.01
204 205 5.352643 ACTACCACTTTACGAATTTGTGC 57.647 39.130 8.70 0.00 0.00 4.57
205 206 7.165154 CACAAACTACCACTTTACGAATTTGTG 59.835 37.037 8.70 10.52 44.35 3.33
206 207 7.190871 CACAAACTACCACTTTACGAATTTGT 58.809 34.615 3.29 3.29 38.04 2.83
207 208 6.635239 CCACAAACTACCACTTTACGAATTTG 59.365 38.462 0.00 0.00 0.00 2.32
208 209 6.238814 CCCACAAACTACCACTTTACGAATTT 60.239 38.462 0.00 0.00 0.00 1.82
209 210 5.239963 CCCACAAACTACCACTTTACGAATT 59.760 40.000 0.00 0.00 0.00 2.17
210 211 4.758165 CCCACAAACTACCACTTTACGAAT 59.242 41.667 0.00 0.00 0.00 3.34
211 212 4.128643 CCCACAAACTACCACTTTACGAA 58.871 43.478 0.00 0.00 0.00 3.85
212 213 3.731089 CCCACAAACTACCACTTTACGA 58.269 45.455 0.00 0.00 0.00 3.43
213 214 2.224784 GCCCACAAACTACCACTTTACG 59.775 50.000 0.00 0.00 0.00 3.18
214 215 3.004002 GTGCCCACAAACTACCACTTTAC 59.996 47.826 0.00 0.00 0.00 2.01
215 216 3.215975 GTGCCCACAAACTACCACTTTA 58.784 45.455 0.00 0.00 0.00 1.85
216 217 2.028876 GTGCCCACAAACTACCACTTT 58.971 47.619 0.00 0.00 0.00 2.66
217 218 1.687563 GTGCCCACAAACTACCACTT 58.312 50.000 0.00 0.00 0.00 3.16
218 219 0.534203 CGTGCCCACAAACTACCACT 60.534 55.000 0.00 0.00 0.00 4.00
219 220 1.512156 CCGTGCCCACAAACTACCAC 61.512 60.000 0.00 0.00 0.00 4.16
220 221 1.228003 CCGTGCCCACAAACTACCA 60.228 57.895 0.00 0.00 0.00 3.25
221 222 0.322187 ATCCGTGCCCACAAACTACC 60.322 55.000 0.00 0.00 0.00 3.18
222 223 1.084289 GATCCGTGCCCACAAACTAC 58.916 55.000 0.00 0.00 0.00 2.73
223 224 0.035820 GGATCCGTGCCCACAAACTA 60.036 55.000 0.00 0.00 0.00 2.24
224 225 1.303317 GGATCCGTGCCCACAAACT 60.303 57.895 0.00 0.00 0.00 2.66
225 226 1.602323 TGGATCCGTGCCCACAAAC 60.602 57.895 7.39 0.00 0.00 2.93
226 227 2.839836 TGGATCCGTGCCCACAAA 59.160 55.556 7.39 0.00 0.00 2.83
229 230 2.869503 ATTCGTGGATCCGTGCCCAC 62.870 60.000 7.39 0.00 46.99 4.61
230 231 2.191786 AATTCGTGGATCCGTGCCCA 62.192 55.000 7.39 0.00 0.00 5.36
231 232 0.179067 TAATTCGTGGATCCGTGCCC 60.179 55.000 7.39 0.00 0.00 5.36
232 233 1.531149 CATAATTCGTGGATCCGTGCC 59.469 52.381 7.39 0.00 0.00 5.01
233 234 1.531149 CCATAATTCGTGGATCCGTGC 59.469 52.381 7.39 0.00 39.12 5.34
234 235 2.833794 ACCATAATTCGTGGATCCGTG 58.166 47.619 14.79 1.53 39.12 4.94
235 236 3.640029 ACTACCATAATTCGTGGATCCGT 59.360 43.478 14.79 0.00 39.12 4.69
236 237 4.252971 ACTACCATAATTCGTGGATCCG 57.747 45.455 14.79 0.00 39.12 4.18
237 238 6.937436 AAAACTACCATAATTCGTGGATCC 57.063 37.500 14.79 4.20 39.12 3.36
238 239 7.148137 ACCAAAAACTACCATAATTCGTGGATC 60.148 37.037 14.79 0.00 39.12 3.36
239 240 6.661805 ACCAAAAACTACCATAATTCGTGGAT 59.338 34.615 14.79 4.30 39.12 3.41
240 241 6.005198 ACCAAAAACTACCATAATTCGTGGA 58.995 36.000 14.79 1.11 39.12 4.02
241 242 6.262193 ACCAAAAACTACCATAATTCGTGG 57.738 37.500 7.96 7.96 42.55 4.94
242 243 9.680315 TTTAACCAAAAACTACCATAATTCGTG 57.320 29.630 0.00 0.00 0.00 4.35
249 250 9.465199 GGGAGTATTTAACCAAAAACTACCATA 57.535 33.333 0.00 0.00 38.17 2.74
250 251 7.398047 GGGGAGTATTTAACCAAAAACTACCAT 59.602 37.037 4.07 0.00 39.04 3.55
251 252 6.720748 GGGGAGTATTTAACCAAAAACTACCA 59.279 38.462 4.07 0.00 39.04 3.25
252 253 6.153340 GGGGGAGTATTTAACCAAAAACTACC 59.847 42.308 0.00 0.00 37.88 3.18
253 254 6.950041 AGGGGGAGTATTTAACCAAAAACTAC 59.050 38.462 0.00 0.00 0.00 2.73
254 255 7.018851 AGAGGGGGAGTATTTAACCAAAAACTA 59.981 37.037 0.00 0.00 0.00 2.24
255 256 5.972698 AGGGGGAGTATTTAACCAAAAACT 58.027 37.500 0.00 0.00 0.00 2.66
256 257 6.014647 AGAGGGGGAGTATTTAACCAAAAAC 58.985 40.000 0.00 0.00 0.00 2.43
257 258 6.222227 AGAGGGGGAGTATTTAACCAAAAA 57.778 37.500 0.00 0.00 0.00 1.94
258 259 5.871324 AGAGGGGGAGTATTTAACCAAAA 57.129 39.130 0.00 0.00 0.00 2.44
259 260 5.554350 AGAAGAGGGGGAGTATTTAACCAAA 59.446 40.000 0.00 0.00 0.00 3.28
260 261 5.105853 AGAAGAGGGGGAGTATTTAACCAA 58.894 41.667 0.00 0.00 0.00 3.67
261 262 4.706616 AGAAGAGGGGGAGTATTTAACCA 58.293 43.478 0.00 0.00 0.00 3.67
262 263 4.102838 GGAGAAGAGGGGGAGTATTTAACC 59.897 50.000 0.00 0.00 0.00 2.85
263 264 4.969999 AGGAGAAGAGGGGGAGTATTTAAC 59.030 45.833 0.00 0.00 0.00 2.01
264 265 5.236425 AGGAGAAGAGGGGGAGTATTTAA 57.764 43.478 0.00 0.00 0.00 1.52
265 266 4.920781 AGGAGAAGAGGGGGAGTATTTA 57.079 45.455 0.00 0.00 0.00 1.40
266 267 3.805360 AGGAGAAGAGGGGGAGTATTT 57.195 47.619 0.00 0.00 0.00 1.40
267 268 3.805360 AAGGAGAAGAGGGGGAGTATT 57.195 47.619 0.00 0.00 0.00 1.89
268 269 3.276307 AGAAAGGAGAAGAGGGGGAGTAT 59.724 47.826 0.00 0.00 0.00 2.12
269 270 2.660556 AGAAAGGAGAAGAGGGGGAGTA 59.339 50.000 0.00 0.00 0.00 2.59
270 271 1.439143 AGAAAGGAGAAGAGGGGGAGT 59.561 52.381 0.00 0.00 0.00 3.85
271 272 2.115427 GAGAAAGGAGAAGAGGGGGAG 58.885 57.143 0.00 0.00 0.00 4.30
272 273 1.725182 AGAGAAAGGAGAAGAGGGGGA 59.275 52.381 0.00 0.00 0.00 4.81
273 274 2.262266 AGAGAAAGGAGAAGAGGGGG 57.738 55.000 0.00 0.00 0.00 5.40
293 294 8.956446 AAGAAGAGAATGAAAGGGGAAAAATA 57.044 30.769 0.00 0.00 0.00 1.40
303 304 5.814481 AGAGGGGAAAGAAGAGAATGAAAG 58.186 41.667 0.00 0.00 0.00 2.62
343 344 4.891168 AGCACATGAGAAAATATGGCATCA 59.109 37.500 1.65 0.00 0.00 3.07
377 378 2.809696 GCAATTTGCTGGCTTCATTTGT 59.190 40.909 14.11 0.00 40.96 2.83
466 468 6.910536 ATAAAAAGCTAGTCAAGACATCGG 57.089 37.500 2.72 0.00 0.00 4.18
509 511 4.887748 AGAAGATACCCTACATGCATTCG 58.112 43.478 0.00 0.00 0.00 3.34
564 569 5.069781 AGGCTCATGAAAGGACTAGACATAC 59.930 44.000 0.00 0.00 0.00 2.39
613 649 1.865865 TCAAGTTCTGAAGACGCCAC 58.134 50.000 0.00 0.00 0.00 5.01
623 659 3.372206 CCGGCTAGACATTTCAAGTTCTG 59.628 47.826 0.00 0.00 0.00 3.02
664 700 2.492088 GCCGGCTAGATTGTTTCCTTTT 59.508 45.455 22.15 0.00 0.00 2.27
665 701 2.092323 GCCGGCTAGATTGTTTCCTTT 58.908 47.619 22.15 0.00 0.00 3.11
666 702 1.004277 TGCCGGCTAGATTGTTTCCTT 59.996 47.619 29.70 0.00 0.00 3.36
715 751 2.029844 GCACTCTTGACGAGGTGGC 61.030 63.158 11.21 0.87 44.33 5.01
759 795 3.005472 GCAATCATTCATCATCCACAGGG 59.995 47.826 0.00 0.00 0.00 4.45
787 823 6.858993 GGTCAGTTTACATAGATCGAGTCATC 59.141 42.308 0.00 0.00 0.00 2.92
796 832 5.651530 CACAGACGGTCAGTTTACATAGAT 58.348 41.667 11.27 0.00 0.00 1.98
799 835 3.581755 GCACAGACGGTCAGTTTACATA 58.418 45.455 11.27 0.00 0.00 2.29
837 877 0.469917 ACCATGCCAGGAATACGAGG 59.530 55.000 0.00 0.00 0.00 4.63
855 895 4.627900 GCTGGCTTCTTCTTACAACTAGAC 59.372 45.833 0.00 0.00 0.00 2.59
859 899 2.037251 TCGCTGGCTTCTTCTTACAACT 59.963 45.455 0.00 0.00 0.00 3.16
862 902 2.831685 TTCGCTGGCTTCTTCTTACA 57.168 45.000 0.00 0.00 0.00 2.41
863 903 3.326747 TCTTTCGCTGGCTTCTTCTTAC 58.673 45.455 0.00 0.00 0.00 2.34
864 904 3.678056 TCTTTCGCTGGCTTCTTCTTA 57.322 42.857 0.00 0.00 0.00 2.10
865 905 2.550830 TCTTTCGCTGGCTTCTTCTT 57.449 45.000 0.00 0.00 0.00 2.52
875 927 3.609807 GGCTTTGCTTTTATCTTTCGCTG 59.390 43.478 0.00 0.00 0.00 5.18
951 1003 7.059156 TCTCCTATACACTTAGGTTGGACTAC 58.941 42.308 0.00 0.00 39.87 2.73
952 1004 7.217028 TCTCCTATACACTTAGGTTGGACTA 57.783 40.000 0.00 0.00 39.87 2.59
956 1008 5.897824 TCCTTCTCCTATACACTTAGGTTGG 59.102 44.000 0.00 0.00 39.87 3.77
970 1022 4.844655 AGTGGTAAGCTTTTCCTTCTCCTA 59.155 41.667 3.20 0.00 0.00 2.94
990 1042 2.763933 CAGCTACCCATATCTGCAGTG 58.236 52.381 14.67 4.59 0.00 3.66
992 1044 1.805869 GCAGCTACCCATATCTGCAG 58.194 55.000 7.63 7.63 45.77 4.41
994 1046 0.689623 AGGCAGCTACCCATATCTGC 59.310 55.000 0.00 4.65 45.76 4.26
1016 1070 6.445357 TCAAAGACAATGATCCACATGATG 57.555 37.500 0.00 0.00 39.39 3.07
1017 1071 7.997223 AGTATCAAAGACAATGATCCACATGAT 59.003 33.333 0.00 0.00 39.39 2.45
1018 1072 7.341030 AGTATCAAAGACAATGATCCACATGA 58.659 34.615 0.00 0.00 39.39 3.07
1023 1077 8.321353 ACAAGTAGTATCAAAGACAATGATCCA 58.679 33.333 0.00 0.00 38.44 3.41
1173 1230 2.681344 GCAGCAGTCATCAACATCATCA 59.319 45.455 0.00 0.00 0.00 3.07
1174 1231 2.943690 AGCAGCAGTCATCAACATCATC 59.056 45.455 0.00 0.00 0.00 2.92
1175 1232 2.943690 GAGCAGCAGTCATCAACATCAT 59.056 45.455 0.00 0.00 0.00 2.45
1176 1233 2.353323 GAGCAGCAGTCATCAACATCA 58.647 47.619 0.00 0.00 0.00 3.07
1181 1238 0.671472 CCACGAGCAGCAGTCATCAA 60.671 55.000 0.00 0.00 0.00 2.57
1211 1268 2.910482 CGCTGTGTTGTATTGTTGCATC 59.090 45.455 0.00 0.00 0.00 3.91
1264 1321 6.611381 ACCAATGATCGTGTAAATGAGTTTG 58.389 36.000 0.00 0.00 0.00 2.93
1265 1322 6.817765 ACCAATGATCGTGTAAATGAGTTT 57.182 33.333 0.00 0.00 0.00 2.66
1274 1331 9.438228 TCAAGTTTAAATACCAATGATCGTGTA 57.562 29.630 0.00 0.00 0.00 2.90
1308 1368 2.964740 TCAAGCTCATGTAGTGCAGAC 58.035 47.619 0.00 0.00 39.15 3.51
1315 1375 7.215789 AGATCAAGGTATTCAAGCTCATGTAG 58.784 38.462 0.00 0.00 33.87 2.74
1345 1405 1.276622 AGCGAACAGGGATAGTTGGT 58.723 50.000 0.00 0.00 0.00 3.67
1369 1429 4.957954 TTGGAGTACATACGTACCTTCCAT 59.042 41.667 9.95 0.00 45.35 3.41
1406 1469 9.049523 AGTCATTGCACACATATATTGTTCTAG 57.950 33.333 0.00 0.00 36.00 2.43
1453 1518 5.810074 ACTAAACCTGCATGTGTTTTTGTTC 59.190 36.000 12.52 0.00 36.23 3.18
1465 1530 3.610911 GCTAGTCCAACTAAACCTGCAT 58.389 45.455 0.00 0.00 29.00 3.96
1516 1581 2.004408 GAGCTCCCCTCCCAATGCAT 62.004 60.000 0.87 0.00 34.35 3.96
1620 1685 4.508662 ACTCTAATTAAGCACAGGTCTGC 58.491 43.478 0.00 0.00 37.44 4.26
1625 1698 8.228035 AGTACTCTACTCTAATTAAGCACAGG 57.772 38.462 0.00 0.00 32.47 4.00
1745 1848 6.042777 TCCGTTCAATCTATTCACAGACATC 58.957 40.000 0.00 0.00 0.00 3.06
1822 1925 2.290641 TGCCCATCGAACCTGTTATTGT 60.291 45.455 0.00 0.00 0.00 2.71
1829 1932 2.154462 GGAATATGCCCATCGAACCTG 58.846 52.381 0.00 0.00 0.00 4.00
1831 1934 2.270352 TGGAATATGCCCATCGAACC 57.730 50.000 0.00 0.00 0.00 3.62
1832 1935 5.122396 GTCTATTGGAATATGCCCATCGAAC 59.878 44.000 0.00 0.00 33.04 3.95
1863 1966 4.998051 ACTTCCAGTGAAATTGGTACCAT 58.002 39.130 17.17 0.00 45.24 3.55
1867 3629 7.786046 TCTAGTACTTCCAGTGAAATTGGTA 57.214 36.000 0.00 0.00 45.24 3.25
1900 3662 1.925185 GAGTTCCGTTGAGGCGATTAC 59.075 52.381 0.00 0.00 40.77 1.89
1981 3749 5.914898 AATTATTACAGGTGGCAGAAACC 57.085 39.130 0.00 0.00 38.03 3.27
2069 3856 1.040339 ACACAGGGAGAGATCCGCTC 61.040 60.000 4.94 4.94 44.29 5.03
2116 3904 7.768807 AAGTAATTATGCGAGAGATCTAGGT 57.231 36.000 0.00 0.00 0.00 3.08
2264 4067 7.482169 ACATTACTTTGACTGATCTAGGTCA 57.518 36.000 5.38 5.38 40.17 4.02
2557 4446 5.437060 TCTAGTTTTGTGAGGCTTTGAAGT 58.563 37.500 0.00 0.00 0.00 3.01
2738 4627 3.947910 ATTGGACAAATGAAGCACCTG 57.052 42.857 0.00 0.00 0.00 4.00
2884 4774 6.597672 GGTTCATGTGTATCTTGATAACACCA 59.402 38.462 14.51 8.11 42.22 4.17
3448 6736 7.255451 CCAGTAAGGTTAAGAAAATTCAGCACA 60.255 37.037 0.00 0.00 0.00 4.57
3728 7016 5.423886 GTCCCTATCACCTTTGAAAGAGAG 58.576 45.833 6.49 0.00 34.61 3.20
3786 7074 8.050325 AGTCATAGACACTGAAGTAGTCATACT 58.950 37.037 12.44 0.00 38.24 2.12
4066 7405 1.877576 GCTGGGTTAACTGCCAAGGC 61.878 60.000 3.61 3.61 42.35 4.35
4217 7557 1.227380 CGGGAGCAGCACAGGTATC 60.227 63.158 0.00 0.00 0.00 2.24
4902 11637 9.828852 CTGTTTTGCATTACATAATTGCAATTT 57.171 25.926 28.45 14.26 38.35 1.82
4903 11638 9.001542 ACTGTTTTGCATTACATAATTGCAATT 57.998 25.926 26.72 26.72 38.35 2.32
4904 11639 8.550710 ACTGTTTTGCATTACATAATTGCAAT 57.449 26.923 5.99 5.99 38.35 3.56
4905 11640 7.959689 ACTGTTTTGCATTACATAATTGCAA 57.040 28.000 0.00 0.00 37.62 4.08
4906 11641 9.650539 AATACTGTTTTGCATTACATAATTGCA 57.349 25.926 2.31 0.00 32.22 4.08
5025 12648 4.940046 ACTGTGCTAATCAAGTTCATCTGG 59.060 41.667 0.00 0.00 0.00 3.86
5168 12833 4.917906 AGCAAGAGAAGGAATTAGTGGT 57.082 40.909 0.00 0.00 0.00 4.16
5405 14274 7.334171 GGTGCCTATATTTTTCATTGCTGTTTT 59.666 33.333 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.