Multiple sequence alignment - TraesCS2A01G514600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G514600 chr2A 100.000 6925 0 0 1 6925 739288852 739281928 0.000000e+00 12789.0
1 TraesCS2A01G514600 chr2A 94.661 768 19 4 4034 4782 771675990 771676754 0.000000e+00 1171.0
2 TraesCS2A01G514600 chr2A 94.430 772 22 2 4034 4786 595685642 595684873 0.000000e+00 1168.0
3 TraesCS2A01G514600 chr2A 93.600 125 6 2 6187 6310 429716293 429716170 1.190000e-42 185.0
4 TraesCS2A01G514600 chr2A 88.095 84 6 3 3893 3974 763029270 763029189 5.720000e-16 97.1
5 TraesCS2A01G514600 chr2B 96.555 2148 54 10 4784 6925 740747487 740745354 0.000000e+00 3539.0
6 TraesCS2A01G514600 chr2B 85.831 2202 192 48 1183 3335 740750308 740748178 0.000000e+00 2228.0
7 TraesCS2A01G514600 chr2B 91.071 616 42 10 3369 3978 740748073 740747465 0.000000e+00 821.0
8 TraesCS2A01G514600 chr2B 86.270 437 33 8 852 1276 740750551 740750130 3.810000e-122 449.0
9 TraesCS2A01G514600 chr2B 84.892 139 18 3 4854 4990 694069919 694070056 3.370000e-28 137.0
10 TraesCS2A01G514600 chr2B 88.095 84 6 3 3893 3974 794520883 794520964 5.720000e-16 97.1
11 TraesCS2A01G514600 chr2D 96.148 1428 35 7 4782 6197 607654635 607653216 0.000000e+00 2314.0
12 TraesCS2A01G514600 chr2D 86.972 1919 159 38 1696 3569 607657031 607655159 0.000000e+00 2074.0
13 TraesCS2A01G514600 chr2D 92.866 813 39 9 852 1653 607657842 607657038 0.000000e+00 1162.0
14 TraesCS2A01G514600 chr2D 96.272 617 14 3 6309 6925 607653216 607652609 0.000000e+00 1003.0
15 TraesCS2A01G514600 chr2D 92.488 426 27 3 3553 3976 607655035 607654613 7.680000e-169 604.0
16 TraesCS2A01G514600 chr2D 81.778 225 30 8 4781 5003 535222553 535222768 1.980000e-40 178.0
17 TraesCS2A01G514600 chr2D 89.630 135 13 1 4862 4996 635873228 635873095 3.320000e-38 171.0
18 TraesCS2A01G514600 chr2D 86.076 158 21 1 676 833 432025813 432025969 1.190000e-37 169.0
19 TraesCS2A01G514600 chr2D 82.353 170 28 2 676 844 550642778 550642946 5.600000e-31 147.0
20 TraesCS2A01G514600 chr6A 94.014 852 47 3 1 850 606541643 606542492 0.000000e+00 1288.0
21 TraesCS2A01G514600 chr6A 88.406 138 11 4 712 846 119603998 119604133 2.000000e-35 161.0
22 TraesCS2A01G514600 chr6A 80.556 216 32 7 4785 4999 196188050 196187844 2.590000e-34 158.0
23 TraesCS2A01G514600 chr6A 86.957 138 17 1 712 848 602185203 602185066 3.340000e-33 154.0
24 TraesCS2A01G514600 chr6A 86.029 136 18 1 712 846 602212307 602212442 2.010000e-30 145.0
25 TraesCS2A01G514600 chr6A 90.000 80 8 0 486 565 606542060 606542139 3.420000e-18 104.0
26 TraesCS2A01G514600 chr7A 92.949 851 43 8 1 850 643663128 643662294 0.000000e+00 1223.0
27 TraesCS2A01G514600 chr7A 95.189 769 15 8 4034 4782 26314986 26315752 0.000000e+00 1195.0
28 TraesCS2A01G514600 chr7A 94.661 768 18 7 4034 4782 26311068 26310305 0.000000e+00 1170.0
29 TraesCS2A01G514600 chr7A 94.141 768 22 12 4034 4782 41617484 41618247 0.000000e+00 1147.0
30 TraesCS2A01G514600 chr7A 90.599 851 47 17 1 847 701605916 701605095 0.000000e+00 1098.0
31 TraesCS2A01G514600 chr3A 94.895 764 24 1 4034 4782 80464082 80463319 0.000000e+00 1181.0
32 TraesCS2A01G514600 chr3A 93.661 773 28 4 4034 4786 705279295 705278524 0.000000e+00 1136.0
33 TraesCS2A01G514600 chr3A 90.187 856 47 17 1 849 29039003 29038178 0.000000e+00 1081.0
34 TraesCS2A01G514600 chr3A 86.127 173 23 1 676 848 730384729 730384558 1.190000e-42 185.0
35 TraesCS2A01G514600 chr3A 84.659 176 18 6 676 846 103605327 103605498 4.300000e-37 167.0
36 TraesCS2A01G514600 chr3A 88.172 93 8 3 473 565 29038591 29038502 2.640000e-19 108.0
37 TraesCS2A01G514600 chr1A 95.219 753 20 3 4034 4786 33057184 33057920 0.000000e+00 1177.0
38 TraesCS2A01G514600 chr1A 95.060 749 31 2 4034 4782 8229910 8229168 0.000000e+00 1173.0
39 TraesCS2A01G514600 chr1A 82.569 218 25 5 4781 4996 531221149 531220943 5.520000e-41 180.0
40 TraesCS2A01G514600 chr1A 85.816 141 15 4 709 846 517864675 517864813 2.010000e-30 145.0
41 TraesCS2A01G514600 chr5A 93.264 772 26 13 4034 4782 454731292 454732060 0.000000e+00 1114.0
42 TraesCS2A01G514600 chr5A 96.703 273 7 1 4510 4782 42139890 42139620 2.940000e-123 453.0
43 TraesCS2A01G514600 chr5A 89.024 164 17 1 685 848 673723424 673723262 1.180000e-47 202.0
44 TraesCS2A01G514600 chr5A 87.135 171 21 1 676 846 694768865 694768696 7.090000e-45 193.0
45 TraesCS2A01G514600 chr5A 86.286 175 23 1 672 846 198144828 198144655 9.170000e-44 189.0
46 TraesCS2A01G514600 chr5A 93.651 126 7 1 6193 6317 490696788 490696663 3.300000e-43 187.0
47 TraesCS2A01G514600 chr5A 87.952 83 7 3 3895 3975 529182844 529182763 2.060000e-15 95.3
48 TraesCS2A01G514600 chr6B 83.506 770 93 24 4034 4782 708345447 708346203 0.000000e+00 688.0
49 TraesCS2A01G514600 chr6B 86.429 140 19 0 707 846 19499436 19499575 3.340000e-33 154.0
50 TraesCS2A01G514600 chr6B 85.714 147 19 2 702 847 482466537 482466392 3.340000e-33 154.0
51 TraesCS2A01G514600 chr7B 96.970 396 11 1 1 395 69643 70038 0.000000e+00 664.0
52 TraesCS2A01G514600 chr7B 91.447 304 24 1 543 846 70298 70599 3.860000e-112 416.0
53 TraesCS2A01G514600 chr7B 94.915 118 6 0 6194 6311 436210790 436210907 1.190000e-42 185.0
54 TraesCS2A01G514600 chr7B 85.484 124 16 2 495 617 386785065 386784943 2.030000e-25 128.0
55 TraesCS2A01G514600 chr7B 89.706 68 6 1 3883 3949 397446403 397446470 1.240000e-12 86.1
56 TraesCS2A01G514600 chr1B 88.090 487 35 8 33 496 266943132 266943618 2.180000e-154 556.0
57 TraesCS2A01G514600 chr1B 88.265 196 21 2 424 617 266943475 266943670 4.180000e-57 233.0
58 TraesCS2A01G514600 chr1B 92.857 126 8 1 6192 6316 332136278 332136153 1.530000e-41 182.0
59 TraesCS2A01G514600 chr1B 87.770 139 16 1 709 846 264456400 264456538 2.000000e-35 161.0
60 TraesCS2A01G514600 chr1B 82.171 129 16 7 491 617 469175637 469175760 3.420000e-18 104.0
61 TraesCS2A01G514600 chr1B 84.270 89 10 4 3888 3974 557948534 557948620 4.450000e-12 84.2
62 TraesCS2A01G514600 chr7D 94.915 118 6 0 6194 6311 192019152 192019269 1.190000e-42 185.0
63 TraesCS2A01G514600 chr7D 90.299 134 12 1 6177 6310 561921971 561921839 2.570000e-39 174.0
64 TraesCS2A01G514600 chr7D 86.420 81 7 4 3896 3974 481190412 481190334 1.240000e-12 86.1
65 TraesCS2A01G514600 chr5B 86.127 173 22 2 676 846 65726401 65726573 1.190000e-42 185.0
66 TraesCS2A01G514600 chr5B 84.302 172 23 3 676 845 649448263 649448094 1.550000e-36 165.0
67 TraesCS2A01G514600 chr3D 93.496 123 8 0 6190 6312 208640587 208640709 4.270000e-42 183.0
68 TraesCS2A01G514600 chr3D 92.800 125 9 0 6190 6314 499633599 499633723 1.530000e-41 182.0
69 TraesCS2A01G514600 chr4B 87.037 162 20 1 685 846 496426952 496426792 1.530000e-41 182.0
70 TraesCS2A01G514600 chr4A 90.071 141 13 1 4847 4987 34286541 34286680 1.530000e-41 182.0
71 TraesCS2A01G514600 chr4A 86.667 150 19 1 707 855 148066872 148066723 1.550000e-36 165.0
72 TraesCS2A01G514600 chr4A 86.957 138 17 1 712 848 420041211 420041348 3.340000e-33 154.0
73 TraesCS2A01G514600 chr4A 89.157 83 6 3 3895 3975 395037571 395037490 4.420000e-17 100.0
74 TraesCS2A01G514600 chr6D 81.395 215 31 7 4785 4999 149732422 149732627 4.300000e-37 167.0
75 TraesCS2A01G514600 chrUn 85.612 139 19 1 709 846 959511 959649 2.010000e-30 145.0
76 TraesCS2A01G514600 chrUn 87.200 125 14 2 494 617 103274025 103273902 2.600000e-29 141.0
77 TraesCS2A01G514600 chrUn 97.368 76 2 0 32 107 64203715 64203790 5.640000e-26 130.0
78 TraesCS2A01G514600 chr3B 85.401 137 8 6 491 617 784670200 784670334 1.570000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G514600 chr2A 739281928 739288852 6924 True 12789.00 12789 100.00000 1 6925 1 chr2A.!!$R3 6924
1 TraesCS2A01G514600 chr2A 771675990 771676754 764 False 1171.00 1171 94.66100 4034 4782 1 chr2A.!!$F1 748
2 TraesCS2A01G514600 chr2A 595684873 595685642 769 True 1168.00 1168 94.43000 4034 4786 1 chr2A.!!$R2 752
3 TraesCS2A01G514600 chr2B 740745354 740750551 5197 True 1759.25 3539 89.93175 852 6925 4 chr2B.!!$R1 6073
4 TraesCS2A01G514600 chr2D 607652609 607657842 5233 True 1431.40 2314 92.94920 852 6925 5 chr2D.!!$R2 6073
5 TraesCS2A01G514600 chr6A 606541643 606542492 849 False 696.00 1288 92.00700 1 850 2 chr6A.!!$F3 849
6 TraesCS2A01G514600 chr7A 643662294 643663128 834 True 1223.00 1223 92.94900 1 850 1 chr7A.!!$R2 849
7 TraesCS2A01G514600 chr7A 26314986 26315752 766 False 1195.00 1195 95.18900 4034 4782 1 chr7A.!!$F1 748
8 TraesCS2A01G514600 chr7A 26310305 26311068 763 True 1170.00 1170 94.66100 4034 4782 1 chr7A.!!$R1 748
9 TraesCS2A01G514600 chr7A 41617484 41618247 763 False 1147.00 1147 94.14100 4034 4782 1 chr7A.!!$F2 748
10 TraesCS2A01G514600 chr7A 701605095 701605916 821 True 1098.00 1098 90.59900 1 847 1 chr7A.!!$R3 846
11 TraesCS2A01G514600 chr3A 80463319 80464082 763 True 1181.00 1181 94.89500 4034 4782 1 chr3A.!!$R1 748
12 TraesCS2A01G514600 chr3A 705278524 705279295 771 True 1136.00 1136 93.66100 4034 4786 1 chr3A.!!$R2 752
13 TraesCS2A01G514600 chr3A 29038178 29039003 825 True 594.50 1081 89.17950 1 849 2 chr3A.!!$R4 848
14 TraesCS2A01G514600 chr1A 33057184 33057920 736 False 1177.00 1177 95.21900 4034 4786 1 chr1A.!!$F1 752
15 TraesCS2A01G514600 chr1A 8229168 8229910 742 True 1173.00 1173 95.06000 4034 4782 1 chr1A.!!$R1 748
16 TraesCS2A01G514600 chr5A 454731292 454732060 768 False 1114.00 1114 93.26400 4034 4782 1 chr5A.!!$F1 748
17 TraesCS2A01G514600 chr6B 708345447 708346203 756 False 688.00 688 83.50600 4034 4782 1 chr6B.!!$F2 748
18 TraesCS2A01G514600 chr7B 69643 70599 956 False 540.00 664 94.20850 1 846 2 chr7B.!!$F3 845
19 TraesCS2A01G514600 chr1B 266943132 266943670 538 False 394.50 556 88.17750 33 617 2 chr1B.!!$F4 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 389 0.031721 GAGAGAACGGTGTCAACGGT 59.968 55.000 15.94 8.24 41.23 4.83 F
894 1031 0.107945 GCCGTCTCAGAGAAGCCAAT 60.108 55.000 0.20 0.00 0.00 3.16 F
1673 1922 0.243907 GACCGTCTTGCTGAGCACTA 59.756 55.000 6.64 0.00 38.71 2.74 F
1674 1923 0.244994 ACCGTCTTGCTGAGCACTAG 59.755 55.000 6.64 2.59 38.71 2.57 F
2012 2276 0.316204 GCAGGACAAACAGCAGCAAT 59.684 50.000 0.00 0.00 0.00 3.56 F
3348 3684 0.034089 GCTGGCCCAGTGACCTAATT 60.034 55.000 13.35 0.00 33.43 1.40 F
3787 4344 1.013005 CAAGCACCTCTCTCAGCACG 61.013 60.000 0.00 0.00 0.00 5.34 F
4210 4767 1.152756 GCTTCACCACCACCACCTT 60.153 57.895 0.00 0.00 0.00 3.50 F
5652 6282 2.029649 ACTTGCATGGTTGTTCTGCATC 60.030 45.455 4.44 0.00 44.65 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1905 0.244994 ACTAGTGCTCAGCAAGACGG 59.755 55.000 0.00 0.00 41.47 4.79 R
2185 2469 0.839946 ACTATAAGTGGGCAGCTGGG 59.160 55.000 17.12 0.00 0.00 4.45 R
2475 2796 1.003355 ACCAATGGCTCTGTGGTCG 60.003 57.895 0.00 0.00 42.00 4.79 R
2729 3052 1.192534 CAAACCTCTCGCTGTCGTTTC 59.807 52.381 0.00 0.00 36.96 2.78 R
3896 4453 0.722676 TGGGAAGGAGGGAGTACCAT 59.277 55.000 0.00 0.00 43.89 3.55 R
4625 5243 0.392461 GACCTTATCGGCCAACTGCA 60.392 55.000 2.24 0.00 43.89 4.41 R
5524 6146 0.613260 AGCTATCAGTGGCACGGAAA 59.387 50.000 23.65 2.97 33.68 3.13 R
5738 6368 7.062722 GCTCTCTGAAATGCCAAAATAAAAGAC 59.937 37.037 0.00 0.00 0.00 3.01 R
6662 7298 1.001974 TCGACACAAACTGGCTGCTAT 59.998 47.619 0.00 0.00 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 3.676873 CGAATTTTAGCAATGGCCAGCTT 60.677 43.478 23.14 5.19 42.05 3.74
109 113 2.591923 TGGCCAGCTTCATAACAACAA 58.408 42.857 0.00 0.00 0.00 2.83
368 389 0.031721 GAGAGAACGGTGTCAACGGT 59.968 55.000 15.94 8.24 41.23 4.83
371 392 0.108041 AGAACGGTGTCAACGGTGTT 60.108 50.000 15.94 0.00 39.56 3.32
660 793 0.812412 CGACGTGGTGGTGAGGTTTT 60.812 55.000 0.00 0.00 0.00 2.43
661 794 1.385528 GACGTGGTGGTGAGGTTTTT 58.614 50.000 0.00 0.00 0.00 1.94
709 845 8.912988 CAATGACAATGGTGGGTAAGTAATTAT 58.087 33.333 0.00 0.00 0.00 1.28
721 858 8.595421 TGGGTAAGTAATTATCGTAATGGCATA 58.405 33.333 0.00 0.00 0.00 3.14
795 932 6.519679 CATCAGATTGAAGGTTTTGATGGA 57.480 37.500 4.75 0.00 38.65 3.41
798 935 8.857098 CATCAGATTGAAGGTTTTGATGGATAT 58.143 33.333 4.75 0.00 38.65 1.63
893 1030 1.293498 GCCGTCTCAGAGAAGCCAA 59.707 57.895 0.20 0.00 0.00 4.52
894 1031 0.107945 GCCGTCTCAGAGAAGCCAAT 60.108 55.000 0.20 0.00 0.00 3.16
895 1032 1.933247 CCGTCTCAGAGAAGCCAATC 58.067 55.000 0.20 0.00 0.00 2.67
896 1033 1.472376 CCGTCTCAGAGAAGCCAATCC 60.472 57.143 0.20 0.00 0.00 3.01
897 1034 1.205655 CGTCTCAGAGAAGCCAATCCA 59.794 52.381 0.20 0.00 0.00 3.41
902 1039 0.984230 AGAGAAGCCAATCCACCGAA 59.016 50.000 0.00 0.00 0.00 4.30
920 1057 1.328430 AACCGCGAAACCCCCAAAAA 61.328 50.000 8.23 0.00 0.00 1.94
921 1058 1.116536 ACCGCGAAACCCCCAAAAAT 61.117 50.000 8.23 0.00 0.00 1.82
922 1059 0.389296 CCGCGAAACCCCCAAAAATC 60.389 55.000 8.23 0.00 0.00 2.17
923 1060 0.731174 CGCGAAACCCCCAAAAATCG 60.731 55.000 0.00 0.00 0.00 3.34
927 1064 3.718815 CGAAACCCCCAAAAATCGAAAA 58.281 40.909 0.00 0.00 32.38 2.29
935 1075 0.676736 AAAAATCGAAAAGCCCGCCA 59.323 45.000 0.00 0.00 0.00 5.69
1100 1252 4.527583 CCTCTCAGGCAGGCGCTC 62.528 72.222 7.64 0.00 38.60 5.03
1151 1303 1.378124 GACTCTCCGGACTTCCTCGG 61.378 65.000 0.00 0.00 46.89 4.63
1152 1304 2.044252 TCTCCGGACTTCCTCGGG 60.044 66.667 0.00 0.00 45.69 5.14
1153 1305 3.148279 CTCCGGACTTCCTCGGGG 61.148 72.222 0.00 0.00 45.69 5.73
1157 1309 3.009714 GGACTTCCTCGGGGCCTT 61.010 66.667 0.84 0.00 0.00 4.35
1158 1310 2.585153 GACTTCCTCGGGGCCTTC 59.415 66.667 0.84 0.00 0.00 3.46
1159 1311 1.990614 GACTTCCTCGGGGCCTTCT 60.991 63.158 0.84 0.00 0.00 2.85
1160 1312 1.962321 GACTTCCTCGGGGCCTTCTC 61.962 65.000 0.84 0.00 0.00 2.87
1161 1313 2.687566 TTCCTCGGGGCCTTCTCC 60.688 66.667 0.84 0.00 0.00 3.71
1162 1314 4.798682 TCCTCGGGGCCTTCTCCC 62.799 72.222 0.84 0.00 45.80 4.30
1226 1378 4.816984 GGCCCTCGACTCTCCGGA 62.817 72.222 2.93 2.93 0.00 5.14
1227 1379 3.519930 GCCCTCGACTCTCCGGAC 61.520 72.222 0.00 0.00 0.00 4.79
1228 1380 2.272797 CCCTCGACTCTCCGGACT 59.727 66.667 0.00 0.00 0.00 3.85
1229 1381 2.115911 CCCTCGACTCTCCGGACTG 61.116 68.421 0.00 0.00 0.00 3.51
1230 1382 2.115911 CCTCGACTCTCCGGACTGG 61.116 68.421 0.00 0.00 40.09 4.00
1231 1383 2.750637 TCGACTCTCCGGACTGGC 60.751 66.667 0.00 0.00 37.80 4.85
1232 1384 2.752238 CGACTCTCCGGACTGGCT 60.752 66.667 0.00 0.00 37.80 4.75
1233 1385 2.766400 CGACTCTCCGGACTGGCTC 61.766 68.421 0.00 0.00 37.80 4.70
1234 1386 2.752238 ACTCTCCGGACTGGCTCG 60.752 66.667 0.00 0.00 37.80 5.03
1331 1567 2.202932 CCTCGATGCCTTCACCCG 60.203 66.667 0.00 0.00 0.00 5.28
1332 1568 2.202932 CTCGATGCCTTCACCCGG 60.203 66.667 0.00 0.00 0.00 5.73
1618 1863 8.004905 GTGAAGTTTCTCGACTTAAGCTTTTAG 58.995 37.037 3.20 5.46 39.84 1.85
1619 1864 6.469139 AGTTTCTCGACTTAAGCTTTTAGC 57.531 37.500 3.20 0.00 42.84 3.09
1621 1866 3.858247 TCTCGACTTAAGCTTTTAGCCC 58.142 45.455 3.20 0.00 43.77 5.19
1628 1877 5.394738 ACTTAAGCTTTTAGCCCTTTTCCT 58.605 37.500 3.20 0.00 43.77 3.36
1629 1878 5.839063 ACTTAAGCTTTTAGCCCTTTTCCTT 59.161 36.000 3.20 0.00 43.77 3.36
1632 1881 5.215252 AGCTTTTAGCCCTTTTCCTTTTC 57.785 39.130 0.00 0.00 43.77 2.29
1653 1902 5.186256 TCTAGATCTGAGAACTGAGTGGT 57.814 43.478 5.18 0.00 0.00 4.16
1656 1905 3.509575 AGATCTGAGAACTGAGTGGTGAC 59.490 47.826 0.00 0.00 0.00 3.67
1658 1907 0.673985 TGAGAACTGAGTGGTGACCG 59.326 55.000 0.00 0.00 0.00 4.79
1659 1908 0.674534 GAGAACTGAGTGGTGACCGT 59.325 55.000 0.00 0.00 0.00 4.83
1660 1909 0.674534 AGAACTGAGTGGTGACCGTC 59.325 55.000 0.00 0.00 0.00 4.79
1661 1910 0.674534 GAACTGAGTGGTGACCGTCT 59.325 55.000 0.00 0.00 0.00 4.18
1662 1911 1.068741 GAACTGAGTGGTGACCGTCTT 59.931 52.381 0.00 0.00 0.00 3.01
1663 1912 0.389391 ACTGAGTGGTGACCGTCTTG 59.611 55.000 0.00 0.00 0.00 3.02
1664 1913 0.946221 CTGAGTGGTGACCGTCTTGC 60.946 60.000 0.00 0.00 0.00 4.01
1665 1914 1.367840 GAGTGGTGACCGTCTTGCT 59.632 57.895 0.00 0.00 0.00 3.91
1666 1915 0.946221 GAGTGGTGACCGTCTTGCTG 60.946 60.000 0.00 0.00 0.00 4.41
1667 1916 1.069090 GTGGTGACCGTCTTGCTGA 59.931 57.895 0.00 0.00 0.00 4.26
1668 1917 0.946221 GTGGTGACCGTCTTGCTGAG 60.946 60.000 0.00 0.00 0.00 3.35
1669 1918 2.029844 GGTGACCGTCTTGCTGAGC 61.030 63.158 0.00 0.00 0.00 4.26
1670 1919 1.300931 GTGACCGTCTTGCTGAGCA 60.301 57.895 1.40 1.40 36.47 4.26
1671 1920 1.300931 TGACCGTCTTGCTGAGCAC 60.301 57.895 6.64 0.00 38.71 4.40
1672 1921 1.005630 GACCGTCTTGCTGAGCACT 60.006 57.895 6.64 0.00 38.71 4.40
1673 1922 0.243907 GACCGTCTTGCTGAGCACTA 59.756 55.000 6.64 0.00 38.71 2.74
1674 1923 0.244994 ACCGTCTTGCTGAGCACTAG 59.755 55.000 6.64 2.59 38.71 2.57
1681 1930 4.803088 GTCTTGCTGAGCACTAGTATGAAG 59.197 45.833 6.64 0.00 38.71 3.02
1685 1934 4.950475 TGCTGAGCACTAGTATGAAGTAGT 59.050 41.667 1.40 0.00 41.64 2.73
1688 1937 7.285629 TGCTGAGCACTAGTATGAAGTAGTAAT 59.714 37.037 1.40 0.00 39.41 1.89
1694 1943 9.064706 GCACTAGTATGAAGTAGTAATACCTGA 57.935 37.037 0.00 0.00 39.41 3.86
1767 2019 2.009051 TGCGTTAGGATGCAAGTCATG 58.991 47.619 0.00 0.00 44.47 3.07
1786 2045 4.039730 TCATGTAGCTCCTCCTTATCAAGC 59.960 45.833 0.00 0.00 0.00 4.01
1795 2054 1.555075 TCCTTATCAAGCGAGGCAGTT 59.445 47.619 0.00 0.00 0.00 3.16
1796 2055 2.027192 TCCTTATCAAGCGAGGCAGTTT 60.027 45.455 0.00 0.00 0.00 2.66
1854 2118 2.287970 TGTATATTGGACTACGCTGGCG 60.288 50.000 13.56 13.56 46.03 5.69
1882 2146 6.935741 TGTGAAAGTTAATGCTTGTACTGT 57.064 33.333 0.00 0.00 0.00 3.55
1887 2151 3.994392 AGTTAATGCTTGTACTGTGACCG 59.006 43.478 0.00 0.00 0.00 4.79
1888 2152 2.543777 AATGCTTGTACTGTGACCGT 57.456 45.000 0.00 0.00 0.00 4.83
1891 2155 3.021269 TGCTTGTACTGTGACCGTTAG 57.979 47.619 0.00 0.00 0.00 2.34
1909 2173 6.127786 ACCGTTAGTTTCTACACCAGATAGAC 60.128 42.308 0.00 0.00 31.77 2.59
1913 2177 8.521176 GTTAGTTTCTACACCAGATAGACAAGA 58.479 37.037 0.00 0.00 31.77 3.02
1929 2193 4.867047 AGACAAGATATCTGTTGTTCGCTG 59.133 41.667 5.86 0.00 38.84 5.18
1953 2217 2.150390 TGCGCAGTTTGAGCTGATTTA 58.850 42.857 5.66 0.00 43.72 1.40
1962 2226 5.183904 AGTTTGAGCTGATTTATTGGTCCAC 59.816 40.000 0.00 0.00 0.00 4.02
1963 2227 4.299586 TGAGCTGATTTATTGGTCCACA 57.700 40.909 0.00 0.00 0.00 4.17
1980 2244 5.451798 GGTCCACATTTGTTTCAACATCTGT 60.452 40.000 0.00 0.00 38.95 3.41
1981 2245 5.687285 GTCCACATTTGTTTCAACATCTGTC 59.313 40.000 0.00 0.00 38.95 3.51
1982 2246 5.359292 TCCACATTTGTTTCAACATCTGTCA 59.641 36.000 0.00 0.00 38.95 3.58
1983 2247 5.459762 CCACATTTGTTTCAACATCTGTCAC 59.540 40.000 0.00 0.00 38.95 3.67
1984 2248 6.035217 CACATTTGTTTCAACATCTGTCACA 58.965 36.000 0.00 0.00 38.95 3.58
1985 2249 6.698329 CACATTTGTTTCAACATCTGTCACAT 59.302 34.615 0.00 0.00 38.95 3.21
1986 2250 6.919662 ACATTTGTTTCAACATCTGTCACATC 59.080 34.615 0.00 0.00 38.95 3.06
2003 2267 2.816087 ACATCTCACATGCAGGACAAAC 59.184 45.455 4.84 0.00 0.00 2.93
2007 2271 0.669619 CACATGCAGGACAAACAGCA 59.330 50.000 4.84 0.00 41.73 4.41
2012 2276 0.316204 GCAGGACAAACAGCAGCAAT 59.684 50.000 0.00 0.00 0.00 3.56
2044 2308 5.105567 TGACTTAACTGACCAAGGAAACA 57.894 39.130 0.00 0.00 0.00 2.83
2051 2315 5.712152 ACTGACCAAGGAAACATGAAATC 57.288 39.130 0.00 0.00 0.00 2.17
2052 2316 5.139727 ACTGACCAAGGAAACATGAAATCA 58.860 37.500 0.00 0.00 0.00 2.57
2059 2323 7.093771 ACCAAGGAAACATGAAATCACTAATCC 60.094 37.037 0.00 0.00 0.00 3.01
2083 2367 8.548025 TCCTGTATTGAGTTCATGGAGAATAAA 58.452 33.333 0.00 0.00 38.76 1.40
2091 2375 5.960202 AGTTCATGGAGAATAAATGGGCTTT 59.040 36.000 0.00 0.00 38.76 3.51
2116 2400 6.214191 TGACCACTCAAGTTCATCTCTATC 57.786 41.667 0.00 0.00 0.00 2.08
2138 2422 6.942532 TCATATTTGGCTTCTGGATAACAC 57.057 37.500 0.00 0.00 0.00 3.32
2155 2439 7.148323 TGGATAACACGTTGGTTCATTGATAAG 60.148 37.037 0.00 0.00 32.29 1.73
2156 2440 7.148306 GGATAACACGTTGGTTCATTGATAAGT 60.148 37.037 0.00 0.00 32.29 2.24
2157 2441 5.356882 ACACGTTGGTTCATTGATAAGTG 57.643 39.130 0.00 0.00 0.00 3.16
2158 2442 5.060506 ACACGTTGGTTCATTGATAAGTGA 58.939 37.500 0.00 0.00 0.00 3.41
2159 2443 5.705441 ACACGTTGGTTCATTGATAAGTGAT 59.295 36.000 0.00 0.00 0.00 3.06
2160 2444 6.876789 ACACGTTGGTTCATTGATAAGTGATA 59.123 34.615 0.00 0.00 0.00 2.15
2161 2445 7.389330 ACACGTTGGTTCATTGATAAGTGATAA 59.611 33.333 0.00 0.00 0.00 1.75
2191 2475 4.345257 CACTGTATATCCACTTACCCAGCT 59.655 45.833 0.00 0.00 0.00 4.24
2194 2478 0.837272 TATCCACTTACCCAGCTGCC 59.163 55.000 8.66 0.00 0.00 4.85
2202 2486 2.184088 TACCCAGCTGCCCACTTATA 57.816 50.000 8.66 0.00 0.00 0.98
2209 2493 4.528596 CCAGCTGCCCACTTATAGTACTAT 59.471 45.833 19.07 19.07 0.00 2.12
2254 2539 8.073467 TCCCATTTATACCAAAACCAAGAATC 57.927 34.615 0.00 0.00 0.00 2.52
2279 2567 5.883673 TCAACTCCTAGCTCTTAGAGAGTTC 59.116 44.000 14.14 0.00 44.12 3.01
2306 2599 7.831691 TTTTTCATTTCTTATGTGGGAGACA 57.168 32.000 0.00 0.00 39.53 3.41
2317 2610 3.948425 GGGAGACACTCTATCCCCA 57.052 57.895 0.00 0.00 46.03 4.96
2318 2611 1.415200 GGGAGACACTCTATCCCCAC 58.585 60.000 0.00 0.00 46.03 4.61
2319 2612 1.062810 GGGAGACACTCTATCCCCACT 60.063 57.143 0.00 0.00 46.03 4.00
2320 2613 2.312390 GGAGACACTCTATCCCCACTC 58.688 57.143 0.00 0.00 0.00 3.51
2321 2614 2.358300 GGAGACACTCTATCCCCACTCA 60.358 54.545 0.00 0.00 0.00 3.41
2322 2615 3.571590 GAGACACTCTATCCCCACTCAT 58.428 50.000 0.00 0.00 0.00 2.90
2323 2616 3.303938 AGACACTCTATCCCCACTCATG 58.696 50.000 0.00 0.00 0.00 3.07
2324 2617 3.052566 AGACACTCTATCCCCACTCATGA 60.053 47.826 0.00 0.00 0.00 3.07
2325 2618 3.706594 GACACTCTATCCCCACTCATGAA 59.293 47.826 0.00 0.00 0.00 2.57
2326 2619 4.302067 ACACTCTATCCCCACTCATGAAT 58.698 43.478 0.00 0.00 0.00 2.57
2327 2620 4.723789 ACACTCTATCCCCACTCATGAATT 59.276 41.667 0.00 0.00 0.00 2.17
2328 2621 5.905331 ACACTCTATCCCCACTCATGAATTA 59.095 40.000 0.00 0.00 0.00 1.40
2329 2622 6.183361 ACACTCTATCCCCACTCATGAATTAC 60.183 42.308 0.00 0.00 0.00 1.89
2330 2623 6.042552 CACTCTATCCCCACTCATGAATTACT 59.957 42.308 0.00 0.00 0.00 2.24
2331 2624 6.617371 ACTCTATCCCCACTCATGAATTACTT 59.383 38.462 0.00 0.00 0.00 2.24
2332 2625 6.830912 TCTATCCCCACTCATGAATTACTTG 58.169 40.000 0.00 0.00 0.00 3.16
2333 2626 5.715439 ATCCCCACTCATGAATTACTTGA 57.285 39.130 0.00 0.00 0.00 3.02
2334 2627 5.715439 TCCCCACTCATGAATTACTTGAT 57.285 39.130 0.00 0.00 33.35 2.57
2335 2628 5.439721 TCCCCACTCATGAATTACTTGATG 58.560 41.667 0.00 0.00 33.35 3.07
2338 2631 6.039047 CCCCACTCATGAATTACTTGATGAAG 59.961 42.308 0.00 0.00 35.06 3.02
2372 2693 5.882557 GGTGTCTGGACTCATCATAATTTGT 59.117 40.000 2.38 0.00 0.00 2.83
2378 2699 7.765819 TCTGGACTCATCATAATTTGTGTACAG 59.234 37.037 12.89 12.89 44.20 2.74
2387 2708 8.771920 TCATAATTTGTGTACAGTTCTGTAGG 57.228 34.615 12.19 0.00 0.00 3.18
2391 2712 4.848562 TGTGTACAGTTCTGTAGGAGTG 57.151 45.455 12.19 0.00 0.00 3.51
2474 2795 3.074390 TGATGAGTTGGATGACTTTGGGT 59.926 43.478 0.00 0.00 0.00 4.51
2475 2796 3.140325 TGAGTTGGATGACTTTGGGTC 57.860 47.619 0.00 0.00 44.70 4.46
2493 2814 1.003355 CGACCACAGAGCCATTGGT 60.003 57.895 4.26 0.00 46.67 3.67
2534 2855 3.502211 TGGAAATTCTTCTCCGCAAGAAC 59.498 43.478 0.00 0.00 43.57 3.01
2543 2864 0.389817 TCCGCAAGAACAGGATGACG 60.390 55.000 0.00 0.00 39.22 4.35
2563 2884 3.005554 CGACAACATGGAAGAGAATGCT 58.994 45.455 0.00 0.00 0.00 3.79
2565 2886 3.350833 ACAACATGGAAGAGAATGCTCC 58.649 45.455 0.00 0.00 42.30 4.70
2593 2914 8.082242 CCGATCAAAGAAAGAAAGGTAAAACAT 58.918 33.333 0.00 0.00 0.00 2.71
2667 2990 6.923508 GCAACTTAAATAAGAGGCTTTTGTGT 59.076 34.615 7.17 0.00 37.08 3.72
2683 3006 9.953565 GGCTTTTGTGTATTATATATAGGGACA 57.046 33.333 0.00 0.00 0.00 4.02
2789 3112 2.362077 AGAGGAACATGTTTGTTGTGGC 59.638 45.455 13.36 0.00 46.01 5.01
2791 3114 1.202359 GGAACATGTTTGTTGTGGCGT 60.202 47.619 13.36 0.00 46.01 5.68
2827 3150 6.207509 AGAGAATACTGAGAGGGTGCTATA 57.792 41.667 0.00 0.00 0.00 1.31
2861 3184 5.852282 AAAAAGGTTGCAGAAAGAAGCTA 57.148 34.783 0.00 0.00 29.89 3.32
2870 3193 8.864024 GGTTGCAGAAAGAAGCTAATAAAATTC 58.136 33.333 0.00 0.00 0.00 2.17
2882 3205 8.340618 AGCTAATAAAATTCAACAAGCAGAGA 57.659 30.769 0.00 0.00 0.00 3.10
2911 3234 2.028130 TCGGCCAAAGAAAAAGCAGAA 58.972 42.857 2.24 0.00 0.00 3.02
2923 3246 1.379576 AGCAGAATGGGCTTCAGGC 60.380 57.895 0.00 0.00 38.81 4.85
2988 3311 3.557595 GTCATAGAAACTGGCTCAATCGG 59.442 47.826 0.00 0.00 0.00 4.18
2996 3319 2.628657 ACTGGCTCAATCGGAGGTATAC 59.371 50.000 0.00 0.00 44.22 1.47
3005 3328 6.755206 TCAATCGGAGGTATACTAAACCATG 58.245 40.000 2.25 0.00 39.64 3.66
3059 3389 7.698550 CCATGTTAGTATCTACTATCGTGCATC 59.301 40.741 15.84 0.00 40.64 3.91
3084 3414 7.042925 TCGTCTTTAACTTTCTTTACTGCTGAC 60.043 37.037 0.00 0.00 0.00 3.51
3142 3472 9.487790 TGACAATGTTTTCAGAAAAGAAACTTT 57.512 25.926 8.67 0.53 37.24 2.66
3217 3547 3.349927 TCTCCAAATGATCAGGTGCTTG 58.650 45.455 0.09 0.00 0.00 4.01
3335 3671 5.590259 TCAGATTTTCTTATTAGTGCTGGCC 59.410 40.000 0.00 0.00 0.00 5.36
3348 3684 0.034089 GCTGGCCCAGTGACCTAATT 60.034 55.000 13.35 0.00 33.43 1.40
3353 3689 3.074687 TGGCCCAGTGACCTAATTGTTTA 59.925 43.478 0.00 0.00 0.00 2.01
3360 3696 6.348540 CCAGTGACCTAATTGTTTACTTCTGC 60.349 42.308 0.00 0.00 0.00 4.26
3681 4237 6.039616 GTGTTTTCCAAAACTTGCATGAGTA 58.960 36.000 14.43 0.00 46.37 2.59
3682 4238 6.701400 GTGTTTTCCAAAACTTGCATGAGTAT 59.299 34.615 14.43 0.00 46.37 2.12
3683 4239 7.224557 GTGTTTTCCAAAACTTGCATGAGTATT 59.775 33.333 14.43 0.00 46.37 1.89
3684 4240 7.768120 TGTTTTCCAAAACTTGCATGAGTATTT 59.232 29.630 14.43 0.76 46.37 1.40
3685 4241 9.255304 GTTTTCCAAAACTTGCATGAGTATTTA 57.745 29.630 6.60 0.00 43.68 1.40
3737 4293 6.515035 GCACCTCTGTTATAAAAACAAGCACT 60.515 38.462 0.00 0.00 0.00 4.40
3787 4344 1.013005 CAAGCACCTCTCTCAGCACG 61.013 60.000 0.00 0.00 0.00 5.34
3804 4361 2.850321 CACGTTGCATTGTACATGGTC 58.150 47.619 0.00 0.00 0.00 4.02
3847 4404 1.740025 GACATAGAGCCAAGGCAACAC 59.260 52.381 14.40 2.01 44.88 3.32
3879 4436 9.019764 GGAAAATTCATTATCATTGTAACCACG 57.980 33.333 0.00 0.00 0.00 4.94
3889 4446 5.000591 TCATTGTAACCACGTCATGAATGT 58.999 37.500 0.00 0.00 0.00 2.71
3896 4453 4.647611 ACCACGTCATGAATGTCCTAAAA 58.352 39.130 0.00 0.00 0.00 1.52
3949 4506 3.614588 CGTTTGACTTTTTCCGGTCTTC 58.385 45.455 0.00 0.00 34.01 2.87
3954 4511 3.813166 TGACTTTTTCCGGTCTTCATCAC 59.187 43.478 0.00 0.00 34.01 3.06
3955 4512 3.813166 GACTTTTTCCGGTCTTCATCACA 59.187 43.478 0.00 0.00 0.00 3.58
3956 4513 3.564225 ACTTTTTCCGGTCTTCATCACAC 59.436 43.478 0.00 0.00 0.00 3.82
3957 4514 2.920724 TTTCCGGTCTTCATCACACA 57.079 45.000 0.00 0.00 0.00 3.72
3958 4515 2.920724 TTCCGGTCTTCATCACACAA 57.079 45.000 0.00 0.00 0.00 3.33
3959 4516 2.163818 TCCGGTCTTCATCACACAAC 57.836 50.000 0.00 0.00 0.00 3.32
3960 4517 1.691976 TCCGGTCTTCATCACACAACT 59.308 47.619 0.00 0.00 0.00 3.16
3961 4518 1.800586 CCGGTCTTCATCACACAACTG 59.199 52.381 0.00 0.00 0.00 3.16
3962 4519 2.483876 CGGTCTTCATCACACAACTGT 58.516 47.619 0.00 0.00 0.00 3.55
4020 4577 8.972262 TTAATTTGCACAAATATTACGCTCAA 57.028 26.923 8.92 0.00 39.88 3.02
4021 4578 9.579768 TTAATTTGCACAAATATTACGCTCAAT 57.420 25.926 8.92 0.00 39.88 2.57
4022 4579 8.477984 AATTTGCACAAATATTACGCTCAATT 57.522 26.923 8.92 0.06 39.88 2.32
4023 4580 7.881643 TTTGCACAAATATTACGCTCAATTT 57.118 28.000 0.00 0.00 0.00 1.82
4024 4581 7.881643 TTGCACAAATATTACGCTCAATTTT 57.118 28.000 0.00 0.00 0.00 1.82
4025 4582 7.881643 TGCACAAATATTACGCTCAATTTTT 57.118 28.000 0.00 0.00 0.00 1.94
4103 4660 1.808531 TACCCTTGTAGCGTGCGTGT 61.809 55.000 0.00 0.00 0.00 4.49
4210 4767 1.152756 GCTTCACCACCACCACCTT 60.153 57.895 0.00 0.00 0.00 3.50
4406 4984 7.147863 TGGTGTATTAATTGGAGCTAGTTCGTA 60.148 37.037 0.05 0.00 0.00 3.43
4718 5336 9.724839 CCGACGGTGTATTATTTTTGAAAATAT 57.275 29.630 5.48 4.18 39.73 1.28
5031 5652 3.085443 GTCAGTACCATGACCTCATCG 57.915 52.381 4.31 0.00 43.12 3.84
5040 5661 5.601662 ACCATGACCTCATCGTGTTTATAG 58.398 41.667 0.00 0.00 42.10 1.31
5049 5670 6.487331 CCTCATCGTGTTTATAGACTACCTCT 59.513 42.308 0.00 0.00 0.00 3.69
5054 5675 6.656270 TCGTGTTTATAGACTACCTCTGTTCA 59.344 38.462 0.00 0.00 0.00 3.18
5078 5699 9.031537 TCAGAAATAAGTGACATGGTTCTAGTA 57.968 33.333 0.00 0.00 0.00 1.82
5272 5893 3.626930 AGCTCGAAGTCTCTATCCAACT 58.373 45.455 0.00 0.00 0.00 3.16
5468 6089 4.632538 ACTTCGGCATGCTAATTTTACC 57.367 40.909 18.92 0.00 0.00 2.85
5487 6108 2.091885 ACCTCCTCATTGGTGTGTGTTT 60.092 45.455 0.00 0.00 34.90 2.83
5564 6186 6.924111 AGCTTGGTTGTAATGTCCTTTTATG 58.076 36.000 0.00 0.00 0.00 1.90
5652 6282 2.029649 ACTTGCATGGTTGTTCTGCATC 60.030 45.455 4.44 0.00 44.65 3.91
5738 6368 9.807649 ATAGTTTAATCTTGCTAAAATGCCTTG 57.192 29.630 0.00 0.00 0.00 3.61
5867 6499 9.862149 AGATTTTTCCTGAACTTTCCTAACTAA 57.138 29.630 0.00 0.00 0.00 2.24
6241 6875 9.480861 TTGTCGGAGAAATGGATATATCTAGAT 57.519 33.333 10.73 10.73 39.69 1.98
6243 6877 8.908903 GTCGGAGAAATGGATATATCTAGATGT 58.091 37.037 15.79 11.37 39.69 3.06
6387 7021 3.438087 ACAGCTGTCATGTACATGCTTTC 59.562 43.478 27.71 17.89 39.21 2.62
6388 7022 3.688185 CAGCTGTCATGTACATGCTTTCT 59.312 43.478 27.71 18.69 39.21 2.52
6430 7064 5.193679 ACCTCATATTAGAACTGGTTTGGC 58.806 41.667 0.00 0.00 0.00 4.52
6463 7099 5.947228 TTCACTTCAGCCTCACTAATTTG 57.053 39.130 0.00 0.00 0.00 2.32
6464 7100 5.227569 TCACTTCAGCCTCACTAATTTGA 57.772 39.130 0.00 0.00 0.00 2.69
6465 7101 5.620206 TCACTTCAGCCTCACTAATTTGAA 58.380 37.500 0.00 0.00 0.00 2.69
6466 7102 6.240894 TCACTTCAGCCTCACTAATTTGAAT 58.759 36.000 0.00 0.00 0.00 2.57
6467 7103 6.716628 TCACTTCAGCCTCACTAATTTGAATT 59.283 34.615 0.00 0.00 0.00 2.17
6468 7104 7.231317 TCACTTCAGCCTCACTAATTTGAATTT 59.769 33.333 0.00 0.00 0.00 1.82
6585 7221 6.985059 ACCTCTAACACTGTAAACTTTCTGTC 59.015 38.462 0.00 0.00 0.00 3.51
6662 7298 7.194112 TCTATTGTGACCTTGATGTTCCATA 57.806 36.000 0.00 0.00 0.00 2.74
6691 7327 3.448686 CAGTTTGTGTCGACTGTTCTCT 58.551 45.455 17.92 5.62 38.70 3.10
6886 7522 5.981088 ATTGTCATGGTTATCTGTGCAAA 57.019 34.783 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 143 0.994995 CTGCTTCACGATCAACGAGG 59.005 55.000 0.00 0.00 45.77 4.63
368 389 2.033448 GCCGACCCATCCACAACA 59.967 61.111 0.00 0.00 0.00 3.33
709 845 4.967084 ATTACCCACTATGCCATTACGA 57.033 40.909 0.00 0.00 0.00 3.43
721 858 9.506018 ACGTGTTTTATACTTTAATTACCCACT 57.494 29.630 0.00 0.00 0.00 4.00
813 950 7.114095 ACCCCTATAAAAGCATTAAAGAACGA 58.886 34.615 0.00 0.00 0.00 3.85
858 995 3.291383 CGGCGGGCACTTTGGAAA 61.291 61.111 0.00 0.00 0.00 3.13
893 1030 2.030958 GTTTCGCGGTTCGGTGGAT 61.031 57.895 6.13 0.00 39.05 3.41
894 1031 2.662527 GTTTCGCGGTTCGGTGGA 60.663 61.111 6.13 0.00 39.05 4.02
895 1032 3.719144 GGTTTCGCGGTTCGGTGG 61.719 66.667 6.13 0.00 39.05 4.61
896 1033 3.719144 GGGTTTCGCGGTTCGGTG 61.719 66.667 6.13 0.00 39.05 4.94
897 1034 4.994471 GGGGTTTCGCGGTTCGGT 62.994 66.667 6.13 0.00 39.05 4.69
902 1039 1.116536 ATTTTTGGGGGTTTCGCGGT 61.117 50.000 6.13 0.00 0.00 5.68
920 1057 0.815615 GAGATGGCGGGCTTTTCGAT 60.816 55.000 2.38 0.00 0.00 3.59
921 1058 1.449601 GAGATGGCGGGCTTTTCGA 60.450 57.895 2.38 0.00 0.00 3.71
922 1059 2.813179 CGAGATGGCGGGCTTTTCG 61.813 63.158 13.90 13.90 0.00 3.46
923 1060 3.102097 CGAGATGGCGGGCTTTTC 58.898 61.111 2.38 0.45 0.00 2.29
1209 1361 4.816984 TCCGGAGAGTCGAGGGCC 62.817 72.222 0.00 0.00 0.00 5.80
1210 1362 3.519930 GTCCGGAGAGTCGAGGGC 61.520 72.222 3.06 0.00 0.00 5.19
1211 1363 2.115911 CAGTCCGGAGAGTCGAGGG 61.116 68.421 3.06 0.00 0.00 4.30
1212 1364 2.115911 CCAGTCCGGAGAGTCGAGG 61.116 68.421 3.06 0.00 36.56 4.63
1213 1365 2.766400 GCCAGTCCGGAGAGTCGAG 61.766 68.421 3.06 0.00 36.56 4.04
1214 1366 2.750637 GCCAGTCCGGAGAGTCGA 60.751 66.667 3.06 0.00 36.56 4.20
1215 1367 2.752238 AGCCAGTCCGGAGAGTCG 60.752 66.667 3.06 0.00 36.56 4.18
1216 1368 2.766400 CGAGCCAGTCCGGAGAGTC 61.766 68.421 3.06 0.00 36.56 3.36
1217 1369 2.752238 CGAGCCAGTCCGGAGAGT 60.752 66.667 3.06 0.00 36.56 3.24
1422 1664 4.880426 AGGATGGGCGTCGGGGAT 62.880 66.667 0.00 0.00 0.00 3.85
1440 1682 4.477975 GGCGTGTCGTCGAGGAGG 62.478 72.222 8.30 2.42 0.00 4.30
1542 1784 4.154347 GAGCCTGGGACGCTGGAG 62.154 72.222 18.10 0.00 36.48 3.86
1584 1829 2.557056 TCGAGAAACTTCACCAGACGAT 59.443 45.455 0.00 0.00 0.00 3.73
1618 1863 5.501156 TCAGATCTAGAAAAGGAAAAGGGC 58.499 41.667 0.00 0.00 0.00 5.19
1619 1864 6.951971 TCTCAGATCTAGAAAAGGAAAAGGG 58.048 40.000 0.00 0.00 0.00 3.95
1621 1866 8.934825 CAGTTCTCAGATCTAGAAAAGGAAAAG 58.065 37.037 13.06 0.00 34.86 2.27
1628 1877 6.495181 ACCACTCAGTTCTCAGATCTAGAAAA 59.505 38.462 13.06 0.00 34.86 2.29
1629 1878 6.013379 ACCACTCAGTTCTCAGATCTAGAAA 58.987 40.000 13.06 0.00 34.86 2.52
1632 1881 4.946772 TCACCACTCAGTTCTCAGATCTAG 59.053 45.833 0.00 0.00 0.00 2.43
1653 1902 1.300931 GTGCTCAGCAAGACGGTCA 60.301 57.895 0.00 0.00 41.47 4.02
1656 1905 0.244994 ACTAGTGCTCAGCAAGACGG 59.755 55.000 0.00 0.00 41.47 4.79
1658 1907 4.377839 TCATACTAGTGCTCAGCAAGAC 57.622 45.455 0.00 0.00 41.47 3.01
1659 1908 4.464244 ACTTCATACTAGTGCTCAGCAAGA 59.536 41.667 0.00 0.00 41.47 3.02
1660 1909 4.753233 ACTTCATACTAGTGCTCAGCAAG 58.247 43.478 0.00 0.00 41.47 4.01
1661 1910 4.808414 ACTTCATACTAGTGCTCAGCAA 57.192 40.909 0.00 0.00 41.47 3.91
1662 1911 4.950475 ACTACTTCATACTAGTGCTCAGCA 59.050 41.667 5.39 0.00 35.60 4.41
1663 1912 5.508200 ACTACTTCATACTAGTGCTCAGC 57.492 43.478 5.39 0.00 0.00 4.26
1665 1914 9.064706 GGTATTACTACTTCATACTAGTGCTCA 57.935 37.037 5.39 0.00 0.00 4.26
1666 1915 9.287373 AGGTATTACTACTTCATACTAGTGCTC 57.713 37.037 5.39 0.00 0.00 4.26
1667 1916 9.069082 CAGGTATTACTACTTCATACTAGTGCT 57.931 37.037 5.39 0.00 0.00 4.40
1668 1917 9.064706 TCAGGTATTACTACTTCATACTAGTGC 57.935 37.037 5.39 0.00 0.00 4.40
1694 1943 7.331687 GCCACACAGCAACTTCAATAAATAAAT 59.668 33.333 0.00 0.00 0.00 1.40
1704 1953 4.653893 TGCCACACAGCAACTTCA 57.346 50.000 0.00 0.00 40.56 3.02
1727 1976 8.942338 AACGCATGACTAGAACTAATTTCATA 57.058 30.769 0.00 0.00 36.57 2.15
1748 2000 2.009774 ACATGACTTGCATCCTAACGC 58.990 47.619 0.00 0.00 34.15 4.84
1767 2019 2.623889 TCGCTTGATAAGGAGGAGCTAC 59.376 50.000 0.00 0.00 0.00 3.58
1817 2076 7.663905 TCCAATATACACAACACTTTAAGCAGT 59.336 33.333 0.00 0.00 0.00 4.40
1819 2078 7.663905 AGTCCAATATACACAACACTTTAAGCA 59.336 33.333 0.00 0.00 0.00 3.91
1833 2092 2.287970 CGCCAGCGTAGTCCAATATACA 60.288 50.000 3.35 0.00 34.35 2.29
1847 2111 1.330306 CTTTCACAAAATCGCCAGCG 58.670 50.000 5.50 5.50 41.35 5.18
1854 2118 9.463443 AGTACAAGCATTAACTTTCACAAAATC 57.537 29.630 0.00 0.00 0.00 2.17
1882 2146 3.890756 TCTGGTGTAGAAACTAACGGTCA 59.109 43.478 0.00 0.00 30.84 4.02
1887 2151 8.521176 TCTTGTCTATCTGGTGTAGAAACTAAC 58.479 37.037 0.00 0.00 39.30 2.34
1888 2152 8.645814 TCTTGTCTATCTGGTGTAGAAACTAA 57.354 34.615 0.00 0.00 39.30 2.24
1891 2155 9.685828 GATATCTTGTCTATCTGGTGTAGAAAC 57.314 37.037 0.00 0.00 39.30 2.78
1909 2173 4.726021 GCACAGCGAACAACAGATATCTTG 60.726 45.833 1.33 2.51 0.00 3.02
1913 2177 2.674852 CAGCACAGCGAACAACAGATAT 59.325 45.455 0.00 0.00 0.00 1.63
1953 2217 5.350504 TGTTGAAACAAATGTGGACCAAT 57.649 34.783 0.00 0.00 35.67 3.16
1962 2226 7.143340 AGATGTGACAGATGTTGAAACAAATG 58.857 34.615 0.00 4.96 43.03 2.32
1963 2227 7.013559 TGAGATGTGACAGATGTTGAAACAAAT 59.986 33.333 0.00 0.00 43.03 2.32
1980 2244 1.624813 TGTCCTGCATGTGAGATGTGA 59.375 47.619 0.00 0.00 0.00 3.58
1981 2245 2.103537 TGTCCTGCATGTGAGATGTG 57.896 50.000 0.00 0.00 0.00 3.21
1982 2246 2.816087 GTTTGTCCTGCATGTGAGATGT 59.184 45.455 0.00 0.00 0.00 3.06
1983 2247 2.815503 TGTTTGTCCTGCATGTGAGATG 59.184 45.455 0.00 0.00 0.00 2.90
1984 2248 3.079578 CTGTTTGTCCTGCATGTGAGAT 58.920 45.455 0.00 0.00 0.00 2.75
1985 2249 2.497138 CTGTTTGTCCTGCATGTGAGA 58.503 47.619 0.00 0.00 0.00 3.27
1986 2250 1.068748 GCTGTTTGTCCTGCATGTGAG 60.069 52.381 0.00 0.00 0.00 3.51
2003 2267 2.421073 TCATCGAAGGAAATTGCTGCTG 59.579 45.455 0.00 0.00 0.00 4.41
2007 2271 5.940470 AGTTAAGTCATCGAAGGAAATTGCT 59.060 36.000 0.00 0.00 0.00 3.91
2012 2276 5.221561 TGGTCAGTTAAGTCATCGAAGGAAA 60.222 40.000 0.00 0.00 0.00 3.13
2044 2308 9.911788 AACTCAATACAGGATTAGTGATTTCAT 57.088 29.630 0.00 0.00 0.00 2.57
2051 2315 7.275183 TCCATGAACTCAATACAGGATTAGTG 58.725 38.462 0.00 0.00 0.00 2.74
2052 2316 7.345653 TCTCCATGAACTCAATACAGGATTAGT 59.654 37.037 0.00 0.00 0.00 2.24
2083 2367 2.380064 TGAGTGGTCAAAAAGCCCAT 57.620 45.000 0.00 0.00 0.00 4.00
2091 2375 5.296151 AGAGATGAACTTGAGTGGTCAAA 57.704 39.130 0.00 0.00 42.27 2.69
2116 2400 5.296780 ACGTGTTATCCAGAAGCCAAATATG 59.703 40.000 0.00 0.00 0.00 1.78
2138 2422 7.692291 GTGTTATCACTTATCAATGAACCAACG 59.308 37.037 0.00 0.00 40.98 4.10
2185 2469 0.839946 ACTATAAGTGGGCAGCTGGG 59.160 55.000 17.12 0.00 0.00 4.45
2225 2510 9.142014 TCTTGGTTTTGGTATAAATGGGATATG 57.858 33.333 0.00 0.00 0.00 1.78
2238 2523 5.768164 GGAGTTGAGATTCTTGGTTTTGGTA 59.232 40.000 0.00 0.00 0.00 3.25
2254 2539 5.437060 ACTCTCTAAGAGCTAGGAGTTGAG 58.563 45.833 3.90 0.15 46.12 3.02
2306 2599 6.146760 AGTAATTCATGAGTGGGGATAGAGT 58.853 40.000 0.00 0.00 0.00 3.24
2308 2601 6.615316 TCAAGTAATTCATGAGTGGGGATAGA 59.385 38.462 0.00 0.00 0.00 1.98
2313 2606 5.439721 TCATCAAGTAATTCATGAGTGGGG 58.560 41.667 0.00 0.00 0.00 4.96
2316 2609 6.094464 TGCCTTCATCAAGTAATTCATGAGTG 59.906 38.462 0.00 0.00 0.00 3.51
2317 2610 6.182627 TGCCTTCATCAAGTAATTCATGAGT 58.817 36.000 0.00 0.00 0.00 3.41
2318 2611 6.688637 TGCCTTCATCAAGTAATTCATGAG 57.311 37.500 0.00 0.00 0.00 2.90
2319 2612 6.604396 ACATGCCTTCATCAAGTAATTCATGA 59.396 34.615 0.00 0.00 33.77 3.07
2320 2613 6.802608 ACATGCCTTCATCAAGTAATTCATG 58.197 36.000 0.00 0.00 35.18 3.07
2321 2614 7.414222 AACATGCCTTCATCAAGTAATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
2322 2615 6.839124 AACATGCCTTCATCAAGTAATTCA 57.161 33.333 0.00 0.00 0.00 2.57
2323 2616 7.063780 CCAAAACATGCCTTCATCAAGTAATTC 59.936 37.037 0.00 0.00 0.00 2.17
2324 2617 6.875195 CCAAAACATGCCTTCATCAAGTAATT 59.125 34.615 0.00 0.00 0.00 1.40
2325 2618 6.014327 ACCAAAACATGCCTTCATCAAGTAAT 60.014 34.615 0.00 0.00 0.00 1.89
2326 2619 5.304101 ACCAAAACATGCCTTCATCAAGTAA 59.696 36.000 0.00 0.00 0.00 2.24
2327 2620 4.832266 ACCAAAACATGCCTTCATCAAGTA 59.168 37.500 0.00 0.00 0.00 2.24
2328 2621 3.642848 ACCAAAACATGCCTTCATCAAGT 59.357 39.130 0.00 0.00 0.00 3.16
2329 2622 3.991773 CACCAAAACATGCCTTCATCAAG 59.008 43.478 0.00 0.00 0.00 3.02
2330 2623 3.387374 ACACCAAAACATGCCTTCATCAA 59.613 39.130 0.00 0.00 0.00 2.57
2331 2624 2.964464 ACACCAAAACATGCCTTCATCA 59.036 40.909 0.00 0.00 0.00 3.07
2332 2625 3.256631 AGACACCAAAACATGCCTTCATC 59.743 43.478 0.00 0.00 0.00 2.92
2333 2626 3.006110 CAGACACCAAAACATGCCTTCAT 59.994 43.478 0.00 0.00 0.00 2.57
2334 2627 2.361757 CAGACACCAAAACATGCCTTCA 59.638 45.455 0.00 0.00 0.00 3.02
2335 2628 2.288395 CCAGACACCAAAACATGCCTTC 60.288 50.000 0.00 0.00 0.00 3.46
2338 2631 1.000274 GTCCAGACACCAAAACATGCC 60.000 52.381 0.00 0.00 0.00 4.40
2372 2693 3.825014 GGTCACTCCTACAGAACTGTACA 59.175 47.826 10.14 0.00 44.42 2.90
2378 2699 5.010820 AGTTACTTGGTCACTCCTACAGAAC 59.989 44.000 0.00 0.00 37.07 3.01
2387 2708 7.571428 GCACAAATAAGAGTTACTTGGTCACTC 60.571 40.741 4.43 4.43 37.14 3.51
2391 2712 5.705905 AGGCACAAATAAGAGTTACTTGGTC 59.294 40.000 0.00 0.00 39.38 4.02
2474 2795 1.296392 CCAATGGCTCTGTGGTCGA 59.704 57.895 0.00 0.00 0.00 4.20
2475 2796 1.003355 ACCAATGGCTCTGTGGTCG 60.003 57.895 0.00 0.00 42.00 4.79
2481 2802 2.507484 TCAACTTGACCAATGGCTCTG 58.493 47.619 0.00 0.00 0.00 3.35
2493 2814 5.055265 TCCACAGGGTAAAATCAACTTGA 57.945 39.130 0.00 0.00 34.93 3.02
2534 2855 2.385013 TCCATGTTGTCGTCATCCTG 57.615 50.000 0.00 0.00 0.00 3.86
2543 2864 3.376546 GGAGCATTCTCTTCCATGTTGTC 59.623 47.826 0.00 0.00 39.31 3.18
2563 2884 4.072131 CCTTTCTTTCTTTGATCGGTGGA 58.928 43.478 0.00 0.00 0.00 4.02
2565 2886 6.554334 TTACCTTTCTTTCTTTGATCGGTG 57.446 37.500 0.00 0.00 0.00 4.94
2711 3034 9.051679 TGTCGTTTCTTCTCTTCAATCATTTTA 57.948 29.630 0.00 0.00 0.00 1.52
2729 3052 1.192534 CAAACCTCTCGCTGTCGTTTC 59.807 52.381 0.00 0.00 36.96 2.78
2789 3112 7.755373 TCAGTATTCTCTATTCACTGTCAAACG 59.245 37.037 0.00 0.00 38.20 3.60
2791 3114 9.025041 TCTCAGTATTCTCTATTCACTGTCAAA 57.975 33.333 0.00 0.00 38.20 2.69
2846 3169 9.979578 TTGAATTTTATTAGCTTCTTTCTGCAA 57.020 25.926 0.00 0.00 0.00 4.08
2870 3193 4.966366 CGACTTCTTTTTCTCTGCTTGTTG 59.034 41.667 0.00 0.00 0.00 3.33
2882 3205 4.729227 TTTCTTTGGCCGACTTCTTTTT 57.271 36.364 0.00 0.00 0.00 1.94
2911 3234 1.228552 ACGTTTGCCTGAAGCCCAT 60.229 52.632 0.00 0.00 42.71 4.00
2923 3246 5.460646 ACAATGGATTCTAAAGCACGTTTG 58.539 37.500 0.00 0.00 0.00 2.93
2960 3283 4.041567 TGAGCCAGTTTCTATGACCTTTGA 59.958 41.667 0.00 0.00 0.00 2.69
2988 3311 8.958119 TGATTTGTCATGGTTTAGTATACCTC 57.042 34.615 10.65 0.00 36.60 3.85
2996 3319 7.119699 TGACTAGCTTGATTTGTCATGGTTTAG 59.880 37.037 1.04 0.00 33.45 1.85
3005 3328 7.700322 TTCGATATGACTAGCTTGATTTGTC 57.300 36.000 1.04 0.00 0.00 3.18
3059 3389 7.064064 GTCAGCAGTAAAGAAAGTTAAAGACG 58.936 38.462 0.00 0.00 0.00 4.18
3084 3414 2.890311 TGGTTGCAAAGGTCCAGTTATG 59.110 45.455 0.00 0.00 0.00 1.90
3142 3472 4.404394 TGGATTACGCTCAACTTGATAGGA 59.596 41.667 0.00 0.00 0.00 2.94
3217 3547 4.655762 TGACAGCTACCATATGACTGAC 57.344 45.455 16.72 12.73 32.67 3.51
3247 3577 7.691158 ACTAAACTTGACCAAAGAAAGTAACG 58.309 34.615 0.00 0.00 39.38 3.18
3251 3581 7.892609 ACAAACTAAACTTGACCAAAGAAAGT 58.107 30.769 0.00 0.00 39.38 2.66
3255 3585 7.830201 TCCTTACAAACTAAACTTGACCAAAGA 59.170 33.333 0.00 0.00 39.38 2.52
3335 3671 6.348540 GCAGAAGTAAACAATTAGGTCACTGG 60.349 42.308 0.00 0.00 0.00 4.00
3348 3684 7.318141 ACTAAGTTATAGCGCAGAAGTAAACA 58.682 34.615 11.47 0.00 0.00 2.83
3353 3689 5.962433 TCAACTAAGTTATAGCGCAGAAGT 58.038 37.500 11.47 0.00 0.00 3.01
3441 3850 8.997323 CAAGCATACATAAAATTTGACCCAAAA 58.003 29.630 0.00 0.00 36.90 2.44
3522 3937 6.773200 ACTTAGCTACATGACTAGCACTATCA 59.227 38.462 15.47 0.00 41.55 2.15
3645 4201 2.176798 TGGAAAACACTCCCACAAGGAT 59.823 45.455 0.00 0.00 46.33 3.24
3699 4255 4.848357 ACAGAGGTGCATAAGTAAGCATT 58.152 39.130 0.00 0.00 43.44 3.56
3716 4272 6.857964 CACCAGTGCTTGTTTTTATAACAGAG 59.142 38.462 0.00 0.00 0.00 3.35
3755 4312 6.208797 AGAGAGGTGCTTGTAAAAATAAACCC 59.791 38.462 0.00 0.00 0.00 4.11
3787 4344 4.229096 CACAAGACCATGTACAATGCAAC 58.771 43.478 0.00 0.00 30.84 4.17
3792 4349 2.083774 CGCCACAAGACCATGTACAAT 58.916 47.619 0.00 0.00 30.84 2.71
3828 4385 1.826385 GTGTTGCCTTGGCTCTATGT 58.174 50.000 13.18 0.00 0.00 2.29
3847 4404 8.876275 ACAATGATAATGAATTTTCCATTCCG 57.124 30.769 0.00 0.00 35.94 4.30
3879 4436 7.012421 GGAGTACCATTTTAGGACATTCATGAC 59.988 40.741 0.00 0.00 35.97 3.06
3889 4446 4.363546 AGGAGGGAGTACCATTTTAGGA 57.636 45.455 0.00 0.00 43.89 2.94
3896 4453 0.722676 TGGGAAGGAGGGAGTACCAT 59.277 55.000 0.00 0.00 43.89 3.55
3994 4551 9.579768 TTGAGCGTAATATTTGTGCAAATTAAT 57.420 25.926 14.29 2.11 40.99 1.40
3995 4552 8.972262 TTGAGCGTAATATTTGTGCAAATTAA 57.028 26.923 14.29 0.00 40.99 1.40
3996 4553 9.579768 AATTGAGCGTAATATTTGTGCAAATTA 57.420 25.926 14.29 1.96 40.99 1.40
3997 4554 8.477984 AATTGAGCGTAATATTTGTGCAAATT 57.522 26.923 14.29 2.82 40.99 1.82
3998 4555 8.477984 AAATTGAGCGTAATATTTGTGCAAAT 57.522 26.923 13.68 13.68 42.95 2.32
3999 4556 7.881643 AAATTGAGCGTAATATTTGTGCAAA 57.118 28.000 0.00 0.00 34.46 3.68
4000 4557 7.881643 AAAATTGAGCGTAATATTTGTGCAA 57.118 28.000 0.00 0.00 0.00 4.08
4001 4558 7.881643 AAAAATTGAGCGTAATATTTGTGCA 57.118 28.000 0.00 0.00 0.00 4.57
4025 4582 9.784824 CGTGCAATTATTGTTATTTTCGAAAAA 57.215 25.926 25.77 10.63 0.00 1.94
4026 4583 7.947299 GCGTGCAATTATTGTTATTTTCGAAAA 59.053 29.630 24.43 24.43 0.00 2.29
4027 4584 7.114953 TGCGTGCAATTATTGTTATTTTCGAAA 59.885 29.630 6.47 6.47 0.00 3.46
4028 4585 6.582672 TGCGTGCAATTATTGTTATTTTCGAA 59.417 30.769 6.81 0.00 0.00 3.71
4029 4586 6.086871 TGCGTGCAATTATTGTTATTTTCGA 58.913 32.000 6.81 0.00 0.00 3.71
4030 4587 6.311332 TGCGTGCAATTATTGTTATTTTCG 57.689 33.333 6.81 3.44 0.00 3.46
4031 4588 7.728895 AGTTGCGTGCAATTATTGTTATTTTC 58.271 30.769 10.85 0.00 38.28 2.29
4032 4589 7.650834 AGTTGCGTGCAATTATTGTTATTTT 57.349 28.000 10.85 0.00 38.28 1.82
4406 4984 5.742562 TCTTCCTTCCTCCTCTCTCTTAT 57.257 43.478 0.00 0.00 0.00 1.73
4625 5243 0.392461 GACCTTATCGGCCAACTGCA 60.392 55.000 2.24 0.00 43.89 4.41
4888 5509 8.687292 AGTGCATTGATTGAACATGTATAGAT 57.313 30.769 0.00 0.00 36.17 1.98
4890 5511 9.016623 CAAAGTGCATTGATTGAACATGTATAG 57.983 33.333 0.00 0.00 36.17 1.31
5031 5652 8.053026 TCTGAACAGAGGTAGTCTATAAACAC 57.947 38.462 0.00 0.00 32.51 3.32
5040 5661 7.542824 GTCACTTATTTCTGAACAGAGGTAGTC 59.457 40.741 4.72 0.00 38.88 2.59
5049 5670 6.998074 AGAACCATGTCACTTATTTCTGAACA 59.002 34.615 0.00 0.00 0.00 3.18
5054 5675 8.812972 TGTACTAGAACCATGTCACTTATTTCT 58.187 33.333 0.00 0.00 0.00 2.52
5272 5893 9.665719 TTATGAGTGACATAGCAAATAGTGAAA 57.334 29.630 0.00 0.00 41.64 2.69
5468 6089 3.502211 GGTAAACACACACCAATGAGGAG 59.498 47.826 0.00 0.00 41.22 3.69
5487 6108 3.075582 CCCCCTAGTGTATAGCTCAGGTA 59.924 52.174 0.00 0.00 0.00 3.08
5524 6146 0.613260 AGCTATCAGTGGCACGGAAA 59.387 50.000 23.65 2.97 33.68 3.13
5738 6368 7.062722 GCTCTCTGAAATGCCAAAATAAAAGAC 59.937 37.037 0.00 0.00 0.00 3.01
5878 6510 8.948631 TTGCACAAAACCTACAAAATAAATCA 57.051 26.923 0.00 0.00 0.00 2.57
6463 7099 6.346359 GCAAAGAAGCATGTGAACTGAAATTC 60.346 38.462 0.00 0.00 0.00 2.17
6464 7100 5.464389 GCAAAGAAGCATGTGAACTGAAATT 59.536 36.000 0.00 0.00 0.00 1.82
6465 7101 4.986659 GCAAAGAAGCATGTGAACTGAAAT 59.013 37.500 0.00 0.00 0.00 2.17
6466 7102 4.098349 AGCAAAGAAGCATGTGAACTGAAA 59.902 37.500 0.00 0.00 36.85 2.69
6467 7103 3.633525 AGCAAAGAAGCATGTGAACTGAA 59.366 39.130 0.00 0.00 36.85 3.02
6468 7104 3.216800 AGCAAAGAAGCATGTGAACTGA 58.783 40.909 0.00 0.00 36.85 3.41
6585 7221 5.377358 CACTGTGTTTTGCTATCTTTCTCG 58.623 41.667 0.00 0.00 0.00 4.04
6662 7298 1.001974 TCGACACAAACTGGCTGCTAT 59.998 47.619 0.00 0.00 0.00 2.97
6706 7342 3.368248 AGGCATTAGGAGGTACGTGTTA 58.632 45.455 0.00 0.00 0.00 2.41
6886 7522 5.772393 TTTGGGACTATCACACCATTAGT 57.228 39.130 0.00 0.00 32.18 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.