Multiple sequence alignment - TraesCS2A01G514000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G514000 chr2A 100.000 3151 0 0 1 3151 738370749 738373899 0.000000e+00 5819
1 TraesCS2A01G514000 chr2A 92.079 101 6 2 2608 2707 43144558 43144657 1.180000e-29 141
2 TraesCS2A01G514000 chr2D 90.715 1594 94 22 554 2103 606708813 606710396 0.000000e+00 2074
3 TraesCS2A01G514000 chr2D 92.308 520 25 10 2102 2613 606710507 606711019 0.000000e+00 725
4 TraesCS2A01G514000 chr2D 89.056 466 16 7 2705 3145 606711014 606711469 2.140000e-151 545
5 TraesCS2A01G514000 chr2D 92.157 102 7 1 2612 2713 107204173 107204073 3.280000e-30 143
6 TraesCS2A01G514000 chr2D 86.275 102 14 0 1465 1566 590146506 590146607 9.240000e-21 111
7 TraesCS2A01G514000 chr2B 88.919 1092 57 29 641 1680 740321871 740320792 0.000000e+00 1288
8 TraesCS2A01G514000 chr2B 82.314 752 71 35 1722 2426 740320604 740319868 2.090000e-166 595
9 TraesCS2A01G514000 chr2B 83.799 358 32 14 2713 3058 740318996 740318653 1.820000e-82 316
10 TraesCS2A01G514000 chr2B 90.222 225 19 3 1 223 597538289 597538066 1.110000e-74 291
11 TraesCS2A01G514000 chr2B 87.793 213 22 3 3 213 655527029 655526819 2.430000e-61 246
12 TraesCS2A01G514000 chr6A 95.783 332 13 1 208 539 110491187 110490857 4.630000e-148 534
13 TraesCS2A01G514000 chr6A 95.482 332 14 1 208 539 224017501 224017171 2.150000e-146 529
14 TraesCS2A01G514000 chr6A 95.495 333 12 3 208 539 512722105 512721775 2.150000e-146 529
15 TraesCS2A01G514000 chr7A 95.468 331 15 0 212 542 142300542 142300212 2.150000e-146 529
16 TraesCS2A01G514000 chr7A 95.195 333 15 1 211 543 34843507 34843176 2.780000e-145 525
17 TraesCS2A01G514000 chr5A 95.482 332 14 1 208 539 615107827 615108157 2.150000e-146 529
18 TraesCS2A01G514000 chr5A 91.589 214 16 2 1 213 83550020 83550232 8.550000e-76 294
19 TraesCS2A01G514000 chr5A 79.235 183 36 2 1382 1563 336950088 336950269 3.300000e-25 126
20 TraesCS2A01G514000 chr4A 95.181 332 14 2 208 539 454924522 454924193 1.000000e-144 523
21 TraesCS2A01G514000 chr4A 95.181 332 15 1 208 539 559347602 559347272 1.000000e-144 523
22 TraesCS2A01G514000 chr4A 88.288 222 21 4 1 219 90510146 90509927 8.670000e-66 261
23 TraesCS2A01G514000 chr4A 92.079 101 6 2 2609 2708 389449707 389449608 1.180000e-29 141
24 TraesCS2A01G514000 chr1A 95.181 332 15 1 208 539 122321495 122321165 1.000000e-144 523
25 TraesCS2A01G514000 chr1A 83.246 191 30 2 1378 1567 33398711 33398522 1.160000e-39 174
26 TraesCS2A01G514000 chr6B 91.628 215 14 4 1 213 53446030 53446242 8.550000e-76 294
27 TraesCS2A01G514000 chr4D 90.654 214 16 3 1 213 202679565 202679775 6.650000e-72 281
28 TraesCS2A01G514000 chr4D 88.889 216 19 5 1 213 459686975 459687188 8.670000e-66 261
29 TraesCS2A01G514000 chr3D 89.720 214 19 3 1 212 5851700 5851912 1.440000e-68 270
30 TraesCS2A01G514000 chr3D 91.667 108 6 3 2607 2712 603946260 603946154 2.530000e-31 147
31 TraesCS2A01G514000 chr3D 89.908 109 8 3 2607 2713 495531507 495531614 1.520000e-28 137
32 TraesCS2A01G514000 chr3D 77.387 199 40 5 1386 1581 474615633 474615437 2.570000e-21 113
33 TraesCS2A01G514000 chrUn 88.940 217 19 4 1 213 362344060 362344275 2.410000e-66 263
34 TraesCS2A01G514000 chrUn 91.346 104 7 2 2606 2708 21367747 21367849 1.180000e-29 141
35 TraesCS2A01G514000 chr1D 82.723 191 31 2 1378 1567 35060893 35060704 5.400000e-38 169
36 TraesCS2A01G514000 chr1B 82.632 190 33 0 1378 1567 53365663 53365474 5.400000e-38 169
37 TraesCS2A01G514000 chr5D 93.939 99 4 2 2608 2706 557210940 557211036 7.040000e-32 148
38 TraesCS2A01G514000 chr5D 79.235 183 36 2 1382 1563 254023397 254023578 3.300000e-25 126
39 TraesCS2A01G514000 chr7D 91.589 107 8 1 2612 2718 162222212 162222317 2.530000e-31 147
40 TraesCS2A01G514000 chr5B 90.000 110 8 3 2597 2706 704989262 704989368 4.240000e-29 139
41 TraesCS2A01G514000 chr5B 78.689 183 37 2 1382 1563 288892889 288892708 1.540000e-23 121
42 TraesCS2A01G514000 chr3B 78.392 199 38 5 1386 1581 631037535 631037339 1.190000e-24 124
43 TraesCS2A01G514000 chr3A 77.889 199 39 5 1386 1581 617061281 617061085 5.520000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G514000 chr2A 738370749 738373899 3150 False 5819.000000 5819 100.000000 1 3151 1 chr2A.!!$F2 3150
1 TraesCS2A01G514000 chr2D 606708813 606711469 2656 False 1114.666667 2074 90.693000 554 3145 3 chr2D.!!$F2 2591
2 TraesCS2A01G514000 chr2B 740318653 740321871 3218 True 733.000000 1288 85.010667 641 3058 3 chr2B.!!$R3 2417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.394938 AAGGCACACGGTGACATGTA 59.605 50.0 16.29 0.0 45.35 2.29 F
1705 1785 0.390735 CCTACCACCTACACGTTGGC 60.391 60.0 3.09 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1967 0.103208 CGGCTCCATCCTACACAGAC 59.897 60.0 0.00 0.0 0.0 3.51 R
3013 4086 0.250234 TGCCATACAAAGCGAGCTCT 59.750 50.0 12.85 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.960819 AGTCTACACAGAACCATTCGC 58.039 47.619 0.00 0.00 30.85 4.70
21 22 1.654105 GTCTACACAGAACCATTCGCG 59.346 52.381 0.00 0.00 30.85 5.87
22 23 1.542472 TCTACACAGAACCATTCGCGA 59.458 47.619 3.71 3.71 34.02 5.87
23 24 2.029739 TCTACACAGAACCATTCGCGAA 60.030 45.455 25.66 25.66 34.02 4.70
24 25 0.865769 ACACAGAACCATTCGCGAAC 59.134 50.000 26.00 11.20 34.02 3.95
25 26 1.148310 CACAGAACCATTCGCGAACT 58.852 50.000 26.00 13.57 34.02 3.01
26 27 2.288579 ACACAGAACCATTCGCGAACTA 60.289 45.455 26.00 1.47 34.02 2.24
27 28 2.930040 CACAGAACCATTCGCGAACTAT 59.070 45.455 26.00 10.87 34.02 2.12
28 29 3.370978 CACAGAACCATTCGCGAACTATT 59.629 43.478 26.00 17.65 34.02 1.73
29 30 3.617263 ACAGAACCATTCGCGAACTATTC 59.383 43.478 26.00 24.22 34.02 1.75
30 31 3.616821 CAGAACCATTCGCGAACTATTCA 59.383 43.478 26.00 0.00 34.02 2.57
31 32 4.271049 CAGAACCATTCGCGAACTATTCAT 59.729 41.667 26.00 13.31 34.02 2.57
32 33 4.271049 AGAACCATTCGCGAACTATTCATG 59.729 41.667 26.00 16.14 34.02 3.07
33 34 3.792401 ACCATTCGCGAACTATTCATGA 58.208 40.909 26.00 0.00 0.00 3.07
34 35 3.555956 ACCATTCGCGAACTATTCATGAC 59.444 43.478 26.00 0.00 0.00 3.06
35 36 3.555547 CCATTCGCGAACTATTCATGACA 59.444 43.478 26.00 0.00 0.00 3.58
36 37 4.318333 CCATTCGCGAACTATTCATGACAG 60.318 45.833 26.00 0.00 0.00 3.51
37 38 3.775661 TCGCGAACTATTCATGACAGA 57.224 42.857 6.20 0.00 0.00 3.41
38 39 4.307443 TCGCGAACTATTCATGACAGAT 57.693 40.909 6.20 0.00 0.00 2.90
39 40 4.682787 TCGCGAACTATTCATGACAGATT 58.317 39.130 6.20 0.00 0.00 2.40
40 41 5.109210 TCGCGAACTATTCATGACAGATTT 58.891 37.500 6.20 0.00 0.00 2.17
41 42 5.232202 TCGCGAACTATTCATGACAGATTTC 59.768 40.000 6.20 4.42 0.00 2.17
42 43 5.233050 CGCGAACTATTCATGACAGATTTCT 59.767 40.000 0.00 0.00 0.00 2.52
43 44 6.561166 CGCGAACTATTCATGACAGATTTCTC 60.561 42.308 0.00 0.75 0.00 2.87
44 45 6.478344 GCGAACTATTCATGACAGATTTCTCT 59.522 38.462 9.90 0.00 0.00 3.10
45 46 7.010923 GCGAACTATTCATGACAGATTTCTCTT 59.989 37.037 9.90 0.00 0.00 2.85
46 47 8.877779 CGAACTATTCATGACAGATTTCTCTTT 58.122 33.333 9.90 0.00 0.00 2.52
113 114 9.923143 TTCTACGGGTTATCTTAATATGTGATG 57.077 33.333 0.00 0.00 0.00 3.07
114 115 9.085645 TCTACGGGTTATCTTAATATGTGATGT 57.914 33.333 0.00 0.00 0.00 3.06
115 116 7.962964 ACGGGTTATCTTAATATGTGATGTG 57.037 36.000 0.00 0.00 0.00 3.21
116 117 7.732025 ACGGGTTATCTTAATATGTGATGTGA 58.268 34.615 0.00 0.00 0.00 3.58
117 118 8.208224 ACGGGTTATCTTAATATGTGATGTGAA 58.792 33.333 0.00 0.00 0.00 3.18
118 119 8.712363 CGGGTTATCTTAATATGTGATGTGAAG 58.288 37.037 0.00 0.00 0.00 3.02
119 120 9.778741 GGGTTATCTTAATATGTGATGTGAAGA 57.221 33.333 0.00 0.00 0.00 2.87
123 124 8.913487 ATCTTAATATGTGATGTGAAGATGCA 57.087 30.769 0.00 0.00 32.41 3.96
124 125 8.913487 TCTTAATATGTGATGTGAAGATGCAT 57.087 30.769 0.00 0.00 0.00 3.96
168 169 9.534565 TCACAATGTTTAAATTTGAATTTCGGA 57.465 25.926 16.34 0.00 39.24 4.55
169 170 9.579610 CACAATGTTTAAATTTGAATTTCGGAC 57.420 29.630 16.34 4.50 39.24 4.79
170 171 8.484008 ACAATGTTTAAATTTGAATTTCGGACG 58.516 29.630 16.34 0.00 39.24 4.79
171 172 6.441099 TGTTTAAATTTGAATTTCGGACGC 57.559 33.333 0.00 0.00 39.24 5.19
172 173 5.977725 TGTTTAAATTTGAATTTCGGACGCA 59.022 32.000 0.00 0.00 39.24 5.24
173 174 6.475727 TGTTTAAATTTGAATTTCGGACGCAA 59.524 30.769 0.00 0.00 39.24 4.85
174 175 6.683090 TTAAATTTGAATTTCGGACGCAAG 57.317 33.333 0.00 0.00 39.24 4.01
175 176 2.697431 TTTGAATTTCGGACGCAAGG 57.303 45.000 0.00 0.00 46.39 3.61
176 177 5.612786 AAATTTGAATTTCGGACGCAAGGC 61.613 41.667 0.00 0.00 38.40 4.35
177 178 7.963256 AAATTTGAATTTCGGACGCAAGGCA 62.963 40.000 0.00 0.00 40.28 4.75
185 186 4.539083 ACGCAAGGCACACGGTGA 62.539 61.111 16.29 0.00 46.39 4.02
186 187 4.012895 CGCAAGGCACACGGTGAC 62.013 66.667 16.29 6.26 42.83 3.67
187 188 2.899838 GCAAGGCACACGGTGACA 60.900 61.111 16.29 0.00 45.35 3.58
188 189 2.260869 GCAAGGCACACGGTGACAT 61.261 57.895 16.29 0.98 45.35 3.06
189 190 1.575922 CAAGGCACACGGTGACATG 59.424 57.895 16.29 3.91 45.35 3.21
190 191 1.148273 AAGGCACACGGTGACATGT 59.852 52.632 16.29 0.00 45.35 3.21
191 192 0.394938 AAGGCACACGGTGACATGTA 59.605 50.000 16.29 0.00 45.35 2.29
192 193 0.394938 AGGCACACGGTGACATGTAA 59.605 50.000 16.29 0.00 45.35 2.41
193 194 1.202710 AGGCACACGGTGACATGTAAA 60.203 47.619 16.29 0.00 45.35 2.01
194 195 1.069500 GGCACACGGTGACATGTAAAC 60.069 52.381 16.29 0.00 41.94 2.01
195 196 1.397945 GCACACGGTGACATGTAAACG 60.398 52.381 19.40 19.40 35.23 3.60
196 197 1.862201 CACACGGTGACATGTAAACGT 59.138 47.619 20.92 20.92 35.23 3.99
197 198 2.570468 CACGGTGACATGTAAACGTG 57.430 50.000 33.37 33.37 44.20 4.49
198 199 0.863144 ACGGTGACATGTAAACGTGC 59.137 50.000 25.51 0.00 36.36 5.34
199 200 0.862490 CGGTGACATGTAAACGTGCA 59.138 50.000 12.84 0.00 36.36 4.57
200 201 1.463056 CGGTGACATGTAAACGTGCAT 59.537 47.619 12.84 0.00 36.36 3.96
206 207 2.850321 CATGTAAACGTGCATGTCACC 58.150 47.619 12.96 3.55 41.48 4.02
207 208 2.248280 TGTAAACGTGCATGTCACCT 57.752 45.000 12.96 0.24 42.69 4.00
208 209 1.870402 TGTAAACGTGCATGTCACCTG 59.130 47.619 12.96 4.83 42.69 4.00
209 210 2.139917 GTAAACGTGCATGTCACCTGA 58.860 47.619 12.96 0.00 42.69 3.86
210 211 1.896220 AAACGTGCATGTCACCTGAT 58.104 45.000 12.96 0.00 42.69 2.90
211 212 1.442769 AACGTGCATGTCACCTGATC 58.557 50.000 12.96 0.00 42.69 2.92
212 213 0.610174 ACGTGCATGTCACCTGATCT 59.390 50.000 5.51 0.00 42.69 2.75
213 214 1.824852 ACGTGCATGTCACCTGATCTA 59.175 47.619 5.51 0.00 42.69 1.98
214 215 2.196749 CGTGCATGTCACCTGATCTAC 58.803 52.381 12.62 0.00 42.69 2.59
215 216 2.159184 CGTGCATGTCACCTGATCTACT 60.159 50.000 12.62 0.00 42.69 2.57
216 217 3.452474 GTGCATGTCACCTGATCTACTC 58.548 50.000 8.54 0.00 39.79 2.59
217 218 2.432146 TGCATGTCACCTGATCTACTCC 59.568 50.000 0.00 0.00 0.00 3.85
218 219 2.224161 GCATGTCACCTGATCTACTCCC 60.224 54.545 0.00 0.00 0.00 4.30
219 220 3.303938 CATGTCACCTGATCTACTCCCT 58.696 50.000 0.00 0.00 0.00 4.20
220 221 3.019799 TGTCACCTGATCTACTCCCTC 57.980 52.381 0.00 0.00 0.00 4.30
221 222 2.312390 GTCACCTGATCTACTCCCTCC 58.688 57.143 0.00 0.00 0.00 4.30
222 223 2.091555 GTCACCTGATCTACTCCCTCCT 60.092 54.545 0.00 0.00 0.00 3.69
223 224 2.587777 TCACCTGATCTACTCCCTCCTT 59.412 50.000 0.00 0.00 0.00 3.36
224 225 3.012959 TCACCTGATCTACTCCCTCCTTT 59.987 47.826 0.00 0.00 0.00 3.11
225 226 3.386402 CACCTGATCTACTCCCTCCTTTC 59.614 52.174 0.00 0.00 0.00 2.62
226 227 3.273618 ACCTGATCTACTCCCTCCTTTCT 59.726 47.826 0.00 0.00 0.00 2.52
227 228 3.640967 CCTGATCTACTCCCTCCTTTCTG 59.359 52.174 0.00 0.00 0.00 3.02
228 229 3.640967 CTGATCTACTCCCTCCTTTCTGG 59.359 52.174 0.00 0.00 37.10 3.86
229 230 3.012959 TGATCTACTCCCTCCTTTCTGGT 59.987 47.826 0.00 0.00 37.07 4.00
230 231 3.562108 TCTACTCCCTCCTTTCTGGTT 57.438 47.619 0.00 0.00 37.07 3.67
231 232 3.870559 TCTACTCCCTCCTTTCTGGTTT 58.129 45.455 0.00 0.00 37.07 3.27
232 233 5.019657 TCTACTCCCTCCTTTCTGGTTTA 57.980 43.478 0.00 0.00 37.07 2.01
233 234 5.600749 TCTACTCCCTCCTTTCTGGTTTAT 58.399 41.667 0.00 0.00 37.07 1.40
234 235 6.748969 TCTACTCCCTCCTTTCTGGTTTATA 58.251 40.000 0.00 0.00 37.07 0.98
235 236 7.194050 TCTACTCCCTCCTTTCTGGTTTATAA 58.806 38.462 0.00 0.00 37.07 0.98
236 237 6.314899 ACTCCCTCCTTTCTGGTTTATAAG 57.685 41.667 0.00 0.00 37.07 1.73
237 238 5.191921 ACTCCCTCCTTTCTGGTTTATAAGG 59.808 44.000 0.00 0.00 38.78 2.69
238 239 4.079958 TCCCTCCTTTCTGGTTTATAAGGC 60.080 45.833 0.00 0.00 37.62 4.35
239 240 4.079730 CCCTCCTTTCTGGTTTATAAGGCT 60.080 45.833 0.00 0.00 37.62 4.58
240 241 5.126779 CCTCCTTTCTGGTTTATAAGGCTC 58.873 45.833 0.00 0.00 37.62 4.70
241 242 5.339200 CCTCCTTTCTGGTTTATAAGGCTCA 60.339 44.000 0.00 0.00 37.62 4.26
242 243 6.134535 TCCTTTCTGGTTTATAAGGCTCAA 57.865 37.500 0.00 0.00 37.62 3.02
243 244 6.731467 TCCTTTCTGGTTTATAAGGCTCAAT 58.269 36.000 0.00 0.00 37.62 2.57
244 245 7.182060 TCCTTTCTGGTTTATAAGGCTCAATT 58.818 34.615 0.00 0.00 37.62 2.32
245 246 7.339466 TCCTTTCTGGTTTATAAGGCTCAATTC 59.661 37.037 0.00 0.00 37.62 2.17
246 247 7.122650 CCTTTCTGGTTTATAAGGCTCAATTCA 59.877 37.037 0.00 0.00 31.59 2.57
247 248 8.415950 TTTCTGGTTTATAAGGCTCAATTCAA 57.584 30.769 0.00 0.00 0.00 2.69
248 249 8.415950 TTCTGGTTTATAAGGCTCAATTCAAA 57.584 30.769 0.00 0.00 0.00 2.69
249 250 8.415950 TCTGGTTTATAAGGCTCAATTCAAAA 57.584 30.769 0.00 0.00 0.00 2.44
250 251 8.865090 TCTGGTTTATAAGGCTCAATTCAAAAA 58.135 29.630 0.00 0.00 0.00 1.94
251 252 9.657419 CTGGTTTATAAGGCTCAATTCAAAAAT 57.343 29.630 0.00 0.00 0.00 1.82
252 253 9.651913 TGGTTTATAAGGCTCAATTCAAAAATC 57.348 29.630 0.00 0.00 0.00 2.17
253 254 9.875691 GGTTTATAAGGCTCAATTCAAAAATCT 57.124 29.630 0.00 0.00 0.00 2.40
257 258 5.397142 AGGCTCAATTCAAAAATCTCACC 57.603 39.130 0.00 0.00 0.00 4.02
258 259 4.834496 AGGCTCAATTCAAAAATCTCACCA 59.166 37.500 0.00 0.00 0.00 4.17
259 260 5.305128 AGGCTCAATTCAAAAATCTCACCAA 59.695 36.000 0.00 0.00 0.00 3.67
260 261 5.406477 GGCTCAATTCAAAAATCTCACCAAC 59.594 40.000 0.00 0.00 0.00 3.77
261 262 5.406477 GCTCAATTCAAAAATCTCACCAACC 59.594 40.000 0.00 0.00 0.00 3.77
262 263 6.477053 TCAATTCAAAAATCTCACCAACCA 57.523 33.333 0.00 0.00 0.00 3.67
263 264 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
264 265 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
265 266 4.935352 TCAAAAATCTCACCAACCAAGG 57.065 40.909 0.00 0.00 0.00 3.61
266 267 4.285863 TCAAAAATCTCACCAACCAAGGT 58.714 39.130 0.00 0.00 44.48 3.50
267 268 5.450453 TCAAAAATCTCACCAACCAAGGTA 58.550 37.500 0.00 0.00 40.77 3.08
268 269 5.534654 TCAAAAATCTCACCAACCAAGGTAG 59.465 40.000 0.00 0.00 40.77 3.18
269 270 4.993705 AAATCTCACCAACCAAGGTAGA 57.006 40.909 0.00 0.00 40.77 2.59
270 271 5.520748 AAATCTCACCAACCAAGGTAGAT 57.479 39.130 0.00 0.00 40.77 1.98
271 272 3.981071 TCTCACCAACCAAGGTAGATG 57.019 47.619 0.00 0.00 40.77 2.90
272 273 3.516586 TCTCACCAACCAAGGTAGATGA 58.483 45.455 0.00 0.00 40.77 2.92
273 274 4.104086 TCTCACCAACCAAGGTAGATGAT 58.896 43.478 0.00 0.00 40.77 2.45
274 275 4.080919 TCTCACCAACCAAGGTAGATGATG 60.081 45.833 0.00 0.00 40.77 3.07
275 276 3.843619 TCACCAACCAAGGTAGATGATGA 59.156 43.478 0.00 0.00 40.77 2.92
276 277 4.080919 TCACCAACCAAGGTAGATGATGAG 60.081 45.833 0.00 0.00 40.77 2.90
277 278 3.846588 ACCAACCAAGGTAGATGATGAGT 59.153 43.478 0.00 0.00 40.98 3.41
278 279 4.194640 CCAACCAAGGTAGATGATGAGTG 58.805 47.826 0.00 0.00 0.00 3.51
279 280 4.194640 CAACCAAGGTAGATGATGAGTGG 58.805 47.826 0.00 0.00 0.00 4.00
280 281 3.454858 ACCAAGGTAGATGATGAGTGGT 58.545 45.455 0.00 0.00 33.31 4.16
281 282 3.198635 ACCAAGGTAGATGATGAGTGGTG 59.801 47.826 0.00 0.00 36.77 4.17
282 283 3.432749 CCAAGGTAGATGATGAGTGGTGG 60.433 52.174 0.00 0.00 0.00 4.61
283 284 3.404869 AGGTAGATGATGAGTGGTGGA 57.595 47.619 0.00 0.00 0.00 4.02
284 285 3.724478 AGGTAGATGATGAGTGGTGGAA 58.276 45.455 0.00 0.00 0.00 3.53
285 286 4.302067 AGGTAGATGATGAGTGGTGGAAT 58.698 43.478 0.00 0.00 0.00 3.01
286 287 5.467738 AGGTAGATGATGAGTGGTGGAATA 58.532 41.667 0.00 0.00 0.00 1.75
287 288 6.087456 AGGTAGATGATGAGTGGTGGAATAT 58.913 40.000 0.00 0.00 0.00 1.28
288 289 6.560304 AGGTAGATGATGAGTGGTGGAATATT 59.440 38.462 0.00 0.00 0.00 1.28
289 290 7.072961 AGGTAGATGATGAGTGGTGGAATATTT 59.927 37.037 0.00 0.00 0.00 1.40
290 291 7.721399 GGTAGATGATGAGTGGTGGAATATTTT 59.279 37.037 0.00 0.00 0.00 1.82
291 292 9.125026 GTAGATGATGAGTGGTGGAATATTTTT 57.875 33.333 0.00 0.00 0.00 1.94
331 332 8.438732 GCATCCAATTAATGCTTTTGTTTTTC 57.561 30.769 14.63 0.00 44.83 2.29
332 333 8.291740 GCATCCAATTAATGCTTTTGTTTTTCT 58.708 29.630 14.63 0.00 44.83 2.52
333 334 9.815936 CATCCAATTAATGCTTTTGTTTTTCTC 57.184 29.630 0.00 0.00 0.00 2.87
334 335 8.954950 TCCAATTAATGCTTTTGTTTTTCTCA 57.045 26.923 0.00 0.00 0.00 3.27
335 336 9.388506 TCCAATTAATGCTTTTGTTTTTCTCAA 57.611 25.926 0.00 0.00 0.00 3.02
398 399 4.112716 CATAAAGTGCATGCATTGGTCA 57.887 40.909 25.64 7.86 0.00 4.02
399 400 2.736144 AAAGTGCATGCATTGGTCAG 57.264 45.000 25.64 0.00 0.00 3.51
400 401 1.624336 AAGTGCATGCATTGGTCAGT 58.376 45.000 25.64 0.00 0.00 3.41
401 402 1.624336 AGTGCATGCATTGGTCAGTT 58.376 45.000 25.64 0.00 0.00 3.16
402 403 1.965643 AGTGCATGCATTGGTCAGTTT 59.034 42.857 25.64 0.00 0.00 2.66
403 404 2.366266 AGTGCATGCATTGGTCAGTTTT 59.634 40.909 25.64 0.00 0.00 2.43
404 405 2.733026 GTGCATGCATTGGTCAGTTTTC 59.267 45.455 25.64 1.60 0.00 2.29
405 406 2.629137 TGCATGCATTGGTCAGTTTTCT 59.371 40.909 18.46 0.00 0.00 2.52
406 407 3.248266 GCATGCATTGGTCAGTTTTCTC 58.752 45.455 14.21 0.00 0.00 2.87
407 408 3.057033 GCATGCATTGGTCAGTTTTCTCT 60.057 43.478 14.21 0.00 0.00 3.10
408 409 4.560108 GCATGCATTGGTCAGTTTTCTCTT 60.560 41.667 14.21 0.00 0.00 2.85
409 410 5.335897 GCATGCATTGGTCAGTTTTCTCTTA 60.336 40.000 14.21 0.00 0.00 2.10
410 411 6.680810 CATGCATTGGTCAGTTTTCTCTTAA 58.319 36.000 0.00 0.00 0.00 1.85
411 412 6.899393 TGCATTGGTCAGTTTTCTCTTAAT 57.101 33.333 0.00 0.00 0.00 1.40
412 413 7.994425 TGCATTGGTCAGTTTTCTCTTAATA 57.006 32.000 0.00 0.00 0.00 0.98
413 414 7.816640 TGCATTGGTCAGTTTTCTCTTAATAC 58.183 34.615 0.00 0.00 0.00 1.89
414 415 7.665559 TGCATTGGTCAGTTTTCTCTTAATACT 59.334 33.333 0.00 0.00 0.00 2.12
415 416 8.515414 GCATTGGTCAGTTTTCTCTTAATACTT 58.485 33.333 0.00 0.00 0.00 2.24
416 417 9.831737 CATTGGTCAGTTTTCTCTTAATACTTG 57.168 33.333 0.00 0.00 0.00 3.16
417 418 7.435068 TGGTCAGTTTTCTCTTAATACTTGC 57.565 36.000 0.00 0.00 0.00 4.01
418 419 6.995686 TGGTCAGTTTTCTCTTAATACTTGCA 59.004 34.615 0.00 0.00 0.00 4.08
419 420 7.665559 TGGTCAGTTTTCTCTTAATACTTGCAT 59.334 33.333 0.00 0.00 0.00 3.96
420 421 7.965107 GGTCAGTTTTCTCTTAATACTTGCATG 59.035 37.037 0.00 0.00 0.00 4.06
421 422 7.483059 GTCAGTTTTCTCTTAATACTTGCATGC 59.517 37.037 11.82 11.82 0.00 4.06
422 423 7.174772 TCAGTTTTCTCTTAATACTTGCATGCA 59.825 33.333 18.46 18.46 0.00 3.96
423 424 7.809331 CAGTTTTCTCTTAATACTTGCATGCAA 59.191 33.333 30.12 30.12 0.00 4.08
424 425 8.526147 AGTTTTCTCTTAATACTTGCATGCAAT 58.474 29.630 31.96 22.79 35.20 3.56
441 442 5.402997 TGCAATGATTTAATGCACCTTGA 57.597 34.783 0.00 0.00 44.52 3.02
442 443 5.791666 TGCAATGATTTAATGCACCTTGAA 58.208 33.333 0.00 0.00 44.52 2.69
443 444 5.870433 TGCAATGATTTAATGCACCTTGAAG 59.130 36.000 0.00 0.00 44.52 3.02
444 445 5.870978 GCAATGATTTAATGCACCTTGAAGT 59.129 36.000 0.00 0.00 39.81 3.01
445 446 6.035327 GCAATGATTTAATGCACCTTGAAGTC 59.965 38.462 0.00 0.00 39.81 3.01
446 447 7.318141 CAATGATTTAATGCACCTTGAAGTCT 58.682 34.615 0.00 0.00 0.00 3.24
447 448 6.258230 TGATTTAATGCACCTTGAAGTCTG 57.742 37.500 0.00 0.00 0.00 3.51
448 449 6.003326 TGATTTAATGCACCTTGAAGTCTGA 58.997 36.000 0.00 0.00 0.00 3.27
449 450 6.489700 TGATTTAATGCACCTTGAAGTCTGAA 59.510 34.615 0.00 0.00 0.00 3.02
450 451 5.689383 TTAATGCACCTTGAAGTCTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
451 452 2.708216 TGCACCTTGAAGTCTGAACA 57.292 45.000 0.00 0.00 0.00 3.18
452 453 3.213206 TGCACCTTGAAGTCTGAACAT 57.787 42.857 0.00 0.00 0.00 2.71
453 454 2.880268 TGCACCTTGAAGTCTGAACATG 59.120 45.455 0.00 0.00 0.00 3.21
454 455 2.880890 GCACCTTGAAGTCTGAACATGT 59.119 45.455 0.00 0.00 0.00 3.21
455 456 3.304257 GCACCTTGAAGTCTGAACATGTG 60.304 47.826 0.00 0.00 0.00 3.21
456 457 4.129380 CACCTTGAAGTCTGAACATGTGA 58.871 43.478 0.00 0.00 0.00 3.58
457 458 4.758674 CACCTTGAAGTCTGAACATGTGAT 59.241 41.667 0.00 0.00 0.00 3.06
458 459 4.758674 ACCTTGAAGTCTGAACATGTGATG 59.241 41.667 0.00 0.00 0.00 3.07
459 460 4.155462 CCTTGAAGTCTGAACATGTGATGG 59.845 45.833 0.00 0.00 33.60 3.51
460 461 3.678289 TGAAGTCTGAACATGTGATGGG 58.322 45.455 0.00 0.00 33.60 4.00
461 462 2.795231 AGTCTGAACATGTGATGGGG 57.205 50.000 0.00 0.00 33.60 4.96
462 463 2.269023 AGTCTGAACATGTGATGGGGA 58.731 47.619 0.00 0.00 33.60 4.81
463 464 2.644299 AGTCTGAACATGTGATGGGGAA 59.356 45.455 0.00 0.00 33.60 3.97
464 465 2.749621 GTCTGAACATGTGATGGGGAAC 59.250 50.000 0.00 0.00 33.60 3.62
465 466 2.374839 TCTGAACATGTGATGGGGAACA 59.625 45.455 0.00 0.00 33.60 3.18
466 467 3.156293 CTGAACATGTGATGGGGAACAA 58.844 45.455 0.00 0.00 33.60 2.83
467 468 3.765511 CTGAACATGTGATGGGGAACAAT 59.234 43.478 0.00 0.00 33.60 2.71
468 469 3.763360 TGAACATGTGATGGGGAACAATC 59.237 43.478 0.00 0.00 33.60 2.67
469 470 3.454719 ACATGTGATGGGGAACAATCA 57.545 42.857 0.00 0.00 33.60 2.57
470 471 3.777087 ACATGTGATGGGGAACAATCAA 58.223 40.909 0.00 0.00 33.60 2.57
471 472 4.158786 ACATGTGATGGGGAACAATCAAA 58.841 39.130 0.00 0.00 33.60 2.69
472 473 4.778958 ACATGTGATGGGGAACAATCAAAT 59.221 37.500 0.00 0.00 33.60 2.32
473 474 5.248934 ACATGTGATGGGGAACAATCAAATT 59.751 36.000 0.00 0.00 33.60 1.82
474 475 5.149973 TGTGATGGGGAACAATCAAATTG 57.850 39.130 0.00 0.00 45.59 2.32
475 476 4.837298 TGTGATGGGGAACAATCAAATTGA 59.163 37.500 0.00 0.00 42.83 2.57
476 477 5.047164 TGTGATGGGGAACAATCAAATTGAG 60.047 40.000 1.10 0.00 42.83 3.02
477 478 3.959535 TGGGGAACAATCAAATTGAGC 57.040 42.857 1.10 0.00 42.83 4.26
478 479 2.566724 TGGGGAACAATCAAATTGAGCC 59.433 45.455 1.10 6.79 42.83 4.70
479 480 2.833943 GGGGAACAATCAAATTGAGCCT 59.166 45.455 1.10 0.00 42.83 4.58
480 481 3.261643 GGGGAACAATCAAATTGAGCCTT 59.738 43.478 1.10 0.00 42.83 4.35
481 482 4.466015 GGGGAACAATCAAATTGAGCCTTA 59.534 41.667 1.10 0.00 42.83 2.69
482 483 5.129320 GGGGAACAATCAAATTGAGCCTTAT 59.871 40.000 1.10 0.00 42.83 1.73
483 484 6.323739 GGGGAACAATCAAATTGAGCCTTATA 59.676 38.462 1.10 0.00 42.83 0.98
484 485 7.147742 GGGGAACAATCAAATTGAGCCTTATAA 60.148 37.037 1.10 0.00 42.83 0.98
485 486 8.257306 GGGAACAATCAAATTGAGCCTTATAAA 58.743 33.333 1.10 0.00 42.83 1.40
486 487 9.651913 GGAACAATCAAATTGAGCCTTATAAAA 57.348 29.630 1.10 0.00 42.83 1.52
489 490 9.603921 ACAATCAAATTGAGCCTTATAAAATGG 57.396 29.630 1.10 0.00 42.83 3.16
490 491 9.820725 CAATCAAATTGAGCCTTATAAAATGGA 57.179 29.630 1.10 0.00 42.83 3.41
532 533 9.819267 AGATAAGTCCTATAAACCGAAAAGAAG 57.181 33.333 0.00 0.00 0.00 2.85
533 534 8.959705 ATAAGTCCTATAAACCGAAAAGAAGG 57.040 34.615 0.00 0.00 0.00 3.46
534 535 5.742063 AGTCCTATAAACCGAAAAGAAGGG 58.258 41.667 0.00 0.00 0.00 3.95
535 536 5.486419 AGTCCTATAAACCGAAAAGAAGGGA 59.514 40.000 0.00 0.00 0.00 4.20
536 537 5.816258 GTCCTATAAACCGAAAAGAAGGGAG 59.184 44.000 0.00 0.00 0.00 4.30
537 538 5.486419 TCCTATAAACCGAAAAGAAGGGAGT 59.514 40.000 0.00 0.00 0.00 3.85
538 539 6.669154 TCCTATAAACCGAAAAGAAGGGAGTA 59.331 38.462 0.00 0.00 0.00 2.59
539 540 7.346436 TCCTATAAACCGAAAAGAAGGGAGTAT 59.654 37.037 0.00 0.00 0.00 2.12
540 541 7.441458 CCTATAAACCGAAAAGAAGGGAGTATG 59.559 40.741 0.00 0.00 0.00 2.39
541 542 4.635699 AACCGAAAAGAAGGGAGTATGT 57.364 40.909 0.00 0.00 0.00 2.29
542 543 4.203654 ACCGAAAAGAAGGGAGTATGTC 57.796 45.455 0.00 0.00 0.00 3.06
543 544 3.055312 ACCGAAAAGAAGGGAGTATGTCC 60.055 47.826 0.00 0.00 46.10 4.02
552 553 2.425578 GGAGTATGTCCGCTCTAAGC 57.574 55.000 0.00 0.00 34.84 3.09
564 565 2.347939 CGCTCTAAGCATACAATGTGCG 60.348 50.000 0.00 0.00 46.86 5.34
569 570 3.119193 CATACAATGTGCGGCCCC 58.881 61.111 0.00 0.00 0.00 5.80
588 589 3.826282 TCCAAGAGGGGAGCAAGG 58.174 61.111 0.00 0.00 37.22 3.61
589 590 1.925455 TCCAAGAGGGGAGCAAGGG 60.925 63.158 0.00 0.00 37.22 3.95
612 613 9.763468 AGGGCGTCCAATGCAAATATACATTTG 62.763 40.741 9.71 1.95 43.33 2.32
632 637 2.158623 TGGACATGTTTGCCTCAGAGTT 60.159 45.455 0.00 0.00 0.00 3.01
638 643 3.550820 TGTTTGCCTCAGAGTTGCTTTA 58.449 40.909 0.00 0.00 0.00 1.85
655 660 9.014297 AGTTGCTTTAGTATTAGCTTGTCAATT 57.986 29.630 0.00 0.00 38.22 2.32
688 697 3.653344 GTGAATTTGGACAGGAAAAGGC 58.347 45.455 0.00 0.00 0.00 4.35
737 746 1.204941 CACCTTTACTAGAGCGCCTGT 59.795 52.381 2.29 0.00 0.00 4.00
1016 1062 2.165030 CCAGCATGAAGGTTCACCATTC 59.835 50.000 0.00 0.70 40.49 2.67
1017 1063 3.087031 CAGCATGAAGGTTCACCATTCT 58.913 45.455 0.00 0.00 40.49 2.40
1024 1070 3.077484 AGGTTCACCATTCTCATGTGG 57.923 47.619 0.00 0.00 41.35 4.17
1029 1075 1.064906 CACCATTCTCATGTGGCCTCT 60.065 52.381 3.32 0.00 39.13 3.69
1097 1146 2.684104 CACCTCTCCTCCCTCGGA 59.316 66.667 0.00 0.00 0.00 4.55
1228 1277 3.482232 AACGCCACCAAGCTGCTCT 62.482 57.895 1.00 0.00 0.00 4.09
1255 1304 2.762327 ACCGTCAGAAACCATACCGTAT 59.238 45.455 0.00 0.00 0.00 3.06
1262 1311 4.394920 CAGAAACCATACCGTATGCACTTT 59.605 41.667 12.40 9.08 34.85 2.66
1290 1339 2.560542 AGCTCTGTCTAGTGAAGTGGTG 59.439 50.000 0.00 0.00 0.00 4.17
1291 1340 2.558795 GCTCTGTCTAGTGAAGTGGTGA 59.441 50.000 0.00 0.00 0.00 4.02
1307 1368 4.811024 AGTGGTGATTAAGTATGCATGTCG 59.189 41.667 10.16 0.00 0.00 4.35
1340 1401 3.304257 CACTGAGAAGTGAGAAGTGACG 58.696 50.000 0.00 0.00 40.54 4.35
1436 1503 3.760035 CTGGAGGCGCTGTACCGT 61.760 66.667 7.64 0.00 0.00 4.83
1648 1719 3.873361 GCGACCAAGGTACCTAATTAACC 59.127 47.826 16.67 0.41 0.00 2.85
1680 1753 5.353123 ACACGGTGCAATTAATGGTTACTAG 59.647 40.000 8.30 0.00 0.00 2.57
1682 1755 5.941647 ACGGTGCAATTAATGGTTACTAGTT 59.058 36.000 0.00 0.00 0.00 2.24
1683 1756 7.064847 CACGGTGCAATTAATGGTTACTAGTTA 59.935 37.037 0.00 0.00 0.00 2.24
1684 1757 7.064966 ACGGTGCAATTAATGGTTACTAGTTAC 59.935 37.037 0.00 1.10 0.00 2.50
1686 1759 8.610035 GGTGCAATTAATGGTTACTAGTTACTC 58.390 37.037 11.51 3.37 0.00 2.59
1699 1779 5.504853 ACTAGTTACTCCTACCACCTACAC 58.495 45.833 0.00 0.00 0.00 2.90
1700 1780 3.350833 AGTTACTCCTACCACCTACACG 58.649 50.000 0.00 0.00 0.00 4.49
1701 1781 3.084786 GTTACTCCTACCACCTACACGT 58.915 50.000 0.00 0.00 0.00 4.49
1702 1782 2.299326 ACTCCTACCACCTACACGTT 57.701 50.000 0.00 0.00 0.00 3.99
1703 1783 1.891150 ACTCCTACCACCTACACGTTG 59.109 52.381 0.00 0.00 0.00 4.10
1704 1784 1.203994 CTCCTACCACCTACACGTTGG 59.796 57.143 1.61 1.61 0.00 3.77
1705 1785 0.390735 CCTACCACCTACACGTTGGC 60.391 60.000 3.09 0.00 0.00 4.52
1720 1939 0.613260 TTGGCACGGAGCTATCTGTT 59.387 50.000 2.14 0.00 42.67 3.16
1795 2018 2.401195 GAAGCTTGCGACGATGCC 59.599 61.111 2.10 0.00 0.00 4.40
1796 2019 3.425938 GAAGCTTGCGACGATGCCG 62.426 63.158 2.10 0.00 42.50 5.69
1885 2111 2.586792 GAGGGCTGCACGGAGAAT 59.413 61.111 0.50 0.00 0.00 2.40
1955 2181 1.001048 TGTTGACTTCGTCGTACCTGG 60.001 52.381 0.00 0.00 34.95 4.45
1998 2238 3.113745 CATGCATGGAGCCGGTTC 58.886 61.111 19.40 10.28 44.83 3.62
2080 2324 2.710377 TGCATAGTTGTGGTGTGATCC 58.290 47.619 0.00 0.00 0.00 3.36
2119 2475 6.402983 GGAGTGTGTTAAGAGCTTGATCATTG 60.403 42.308 0.00 0.00 0.00 2.82
2128 2487 3.094572 AGCTTGATCATTGGGTTCTTGG 58.905 45.455 0.00 0.00 0.00 3.61
2282 2641 1.855978 TCGCGTGTTACAAGAACAGTG 59.144 47.619 5.77 0.00 0.00 3.66
2283 2642 1.855978 CGCGTGTTACAAGAACAGTGA 59.144 47.619 1.88 0.00 0.00 3.41
2284 2643 2.475111 CGCGTGTTACAAGAACAGTGAT 59.525 45.455 1.88 0.00 0.00 3.06
2285 2644 3.661678 CGCGTGTTACAAGAACAGTGATG 60.662 47.826 1.88 0.00 0.00 3.07
2286 2645 3.799035 CGTGTTACAAGAACAGTGATGC 58.201 45.455 0.00 0.00 0.00 3.91
2287 2646 3.661678 CGTGTTACAAGAACAGTGATGCG 60.662 47.826 0.00 0.00 0.00 4.73
2298 2657 0.385751 AGTGATGCGGGTACGATCTG 59.614 55.000 0.00 0.00 44.60 2.90
2299 2658 1.067416 TGATGCGGGTACGATCTGC 59.933 57.895 0.00 0.00 44.60 4.26
2300 2659 1.364171 GATGCGGGTACGATCTGCT 59.636 57.895 0.00 0.00 44.60 4.24
2301 2660 0.664767 GATGCGGGTACGATCTGCTC 60.665 60.000 0.00 0.00 44.60 4.26
2302 2661 1.109920 ATGCGGGTACGATCTGCTCT 61.110 55.000 0.00 0.00 44.60 4.09
2304 2663 0.666913 GCGGGTACGATCTGCTCTTA 59.333 55.000 0.00 0.00 44.60 2.10
2305 2664 1.269998 GCGGGTACGATCTGCTCTTAT 59.730 52.381 0.00 0.00 44.60 1.73
2388 2787 3.969352 GTCACATGAGTCATCGTCGATAC 59.031 47.826 7.56 7.01 0.00 2.24
2392 2791 5.050023 CACATGAGTCATCGTCGATACTAGT 60.050 44.000 7.56 0.00 0.00 2.57
2394 2793 6.704937 ACATGAGTCATCGTCGATACTAGTAA 59.295 38.462 7.56 0.00 0.00 2.24
2411 2810 7.668525 ACTAGTAAACTTTCACATTAGTGGC 57.331 36.000 0.00 0.00 45.91 5.01
2445 3246 3.618690 ATCTACACCAACCAGAGCTTC 57.381 47.619 0.00 0.00 0.00 3.86
2457 3258 6.825721 CCAACCAGAGCTTCTAAATATCAACT 59.174 38.462 0.00 0.00 0.00 3.16
2472 3273 3.935818 TCAACTAAGTGGTGGTTTGGA 57.064 42.857 0.00 0.00 33.29 3.53
2486 3287 9.332502 GTGGTGGTTTGGAAAATAAATTAAGTT 57.667 29.630 0.00 0.00 0.00 2.66
2568 3369 6.161381 TCTTATAAAAACGAGGGTGTGTCTC 58.839 40.000 0.00 0.00 0.00 3.36
2620 3690 9.920946 ATTGCAAATAATATATATCCCTCCGTT 57.079 29.630 1.71 0.00 0.00 4.44
2621 3691 8.958119 TGCAAATAATATATATCCCTCCGTTC 57.042 34.615 0.00 0.00 0.00 3.95
2622 3692 7.990886 TGCAAATAATATATATCCCTCCGTTCC 59.009 37.037 0.00 0.00 0.00 3.62
2623 3693 7.990886 GCAAATAATATATATCCCTCCGTTCCA 59.009 37.037 0.00 0.00 0.00 3.53
2624 3694 9.899661 CAAATAATATATATCCCTCCGTTCCAA 57.100 33.333 0.00 0.00 0.00 3.53
2631 3701 4.855298 ATCCCTCCGTTCCAAAAATAGA 57.145 40.909 0.00 0.00 0.00 1.98
2632 3702 4.855298 TCCCTCCGTTCCAAAAATAGAT 57.145 40.909 0.00 0.00 0.00 1.98
2633 3703 4.523083 TCCCTCCGTTCCAAAAATAGATG 58.477 43.478 0.00 0.00 0.00 2.90
2634 3704 4.226394 TCCCTCCGTTCCAAAAATAGATGA 59.774 41.667 0.00 0.00 0.00 2.92
2635 3705 4.335594 CCCTCCGTTCCAAAAATAGATGAC 59.664 45.833 0.00 0.00 0.00 3.06
2636 3706 4.335594 CCTCCGTTCCAAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
2637 3707 4.266714 TCCGTTCCAAAAATAGATGACCC 58.733 43.478 0.00 0.00 0.00 4.46
2638 3708 4.013728 CCGTTCCAAAAATAGATGACCCA 58.986 43.478 0.00 0.00 0.00 4.51
2639 3709 4.461081 CCGTTCCAAAAATAGATGACCCAA 59.539 41.667 0.00 0.00 0.00 4.12
2640 3710 5.399013 CGTTCCAAAAATAGATGACCCAAC 58.601 41.667 0.00 0.00 0.00 3.77
2641 3711 5.183140 CGTTCCAAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2642 3712 6.294508 CGTTCCAAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
2643 3713 7.441836 GTTCCAAAAATAGATGACCCAACTTT 58.558 34.615 0.00 0.00 0.00 2.66
2644 3714 6.991938 TCCAAAAATAGATGACCCAACTTTG 58.008 36.000 0.00 0.00 0.00 2.77
2645 3715 6.553100 TCCAAAAATAGATGACCCAACTTTGT 59.447 34.615 0.00 0.00 0.00 2.83
2646 3716 7.726291 TCCAAAAATAGATGACCCAACTTTGTA 59.274 33.333 0.00 0.00 0.00 2.41
2647 3717 7.812669 CCAAAAATAGATGACCCAACTTTGTAC 59.187 37.037 0.00 0.00 0.00 2.90
2648 3718 8.576442 CAAAAATAGATGACCCAACTTTGTACT 58.424 33.333 0.00 0.00 0.00 2.73
2649 3719 9.802039 AAAAATAGATGACCCAACTTTGTACTA 57.198 29.630 0.00 0.00 0.00 1.82
2650 3720 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2651 3721 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2652 3722 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2653 3723 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2654 3724 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2655 3725 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
2656 3726 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
2657 3727 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
2658 3728 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
2659 3729 7.341030 ACCCAACTTTGTACTAACTTTGTACT 58.659 34.615 12.73 0.00 40.44 2.73
2660 3730 8.485392 ACCCAACTTTGTACTAACTTTGTACTA 58.515 33.333 12.73 4.86 40.44 1.82
2661 3731 9.498176 CCCAACTTTGTACTAACTTTGTACTAT 57.502 33.333 12.73 0.00 40.44 2.12
2697 3767 8.944212 AAATTGAGTCGTCTATTTTAAAACGG 57.056 30.769 1.97 0.00 35.41 4.44
2698 3768 7.894376 ATTGAGTCGTCTATTTTAAAACGGA 57.106 32.000 1.97 1.93 35.89 4.69
2699 3769 6.939551 TGAGTCGTCTATTTTAAAACGGAG 57.060 37.500 1.97 1.74 35.89 4.63
2700 3770 5.865552 TGAGTCGTCTATTTTAAAACGGAGG 59.134 40.000 1.97 9.81 35.89 4.30
2701 3771 5.173664 AGTCGTCTATTTTAAAACGGAGGG 58.826 41.667 1.97 0.99 35.89 4.30
2702 3772 5.047092 AGTCGTCTATTTTAAAACGGAGGGA 60.047 40.000 1.97 3.06 35.89 4.20
2703 3773 5.290400 GTCGTCTATTTTAAAACGGAGGGAG 59.710 44.000 1.97 0.00 35.89 4.30
2704 3774 5.047092 TCGTCTATTTTAAAACGGAGGGAGT 60.047 40.000 1.97 0.00 35.89 3.85
2708 3778 9.993454 GTCTATTTTAAAACGGAGGGAGTATAT 57.007 33.333 1.97 0.00 0.00 0.86
2711 3781 6.469782 TTTAAAACGGAGGGAGTATATCGT 57.530 37.500 0.00 0.00 0.00 3.73
2738 3808 1.259142 TGAGTTTGGGGCATGCATGG 61.259 55.000 27.34 10.03 0.00 3.66
2742 3812 0.040942 TTTGGGGCATGCATGGTACT 59.959 50.000 27.34 0.00 0.00 2.73
2743 3813 0.395586 TTGGGGCATGCATGGTACTC 60.396 55.000 27.34 11.24 0.00 2.59
2744 3814 1.893808 GGGGCATGCATGGTACTCG 60.894 63.158 27.34 0.91 0.00 4.18
2745 3815 1.153168 GGGCATGCATGGTACTCGT 60.153 57.895 27.34 0.00 0.00 4.18
2746 3816 0.105964 GGGCATGCATGGTACTCGTA 59.894 55.000 27.34 0.00 0.00 3.43
2747 3817 1.217882 GGCATGCATGGTACTCGTAC 58.782 55.000 27.34 7.64 35.40 3.67
2748 3818 1.202533 GGCATGCATGGTACTCGTACT 60.203 52.381 27.34 0.00 36.36 2.73
2749 3819 2.035449 GGCATGCATGGTACTCGTACTA 59.965 50.000 27.34 1.71 36.36 1.82
2833 3903 2.571212 CTTTCTGCGGCCATTATACCA 58.429 47.619 2.24 0.00 0.00 3.25
2899 3969 9.793252 ATACATTGCTTTGCTTTAAACATCTAG 57.207 29.630 0.00 0.00 0.00 2.43
2940 4010 1.299089 CACGGTCATGATAGCGCGA 60.299 57.895 12.10 0.00 43.87 5.87
2941 4011 1.008424 ACGGTCATGATAGCGCGAG 60.008 57.895 12.10 0.00 43.87 5.03
2985 4058 7.255381 GCCAATGATATTGAGTAGAGTTGCATT 60.255 37.037 3.24 0.00 0.00 3.56
3097 4200 2.884012 CTGTGGTTACATTCACCTGCAA 59.116 45.455 0.00 0.00 35.97 4.08
3099 4202 2.030274 GTGGTTACATTCACCTGCAACC 60.030 50.000 0.00 0.23 41.21 3.77
3108 4211 2.436646 CCTGCAACCCGGCTACTG 60.437 66.667 0.00 0.00 34.04 2.74
3118 4221 1.588824 CCGGCTACTGTGTACGTGGA 61.589 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.671351 CGCGAATGGTTCTGTGTAGACT 60.671 50.000 0.00 0.00 31.21 3.24
1 2 1.654105 CGCGAATGGTTCTGTGTAGAC 59.346 52.381 0.00 0.00 31.21 2.59
2 3 1.542472 TCGCGAATGGTTCTGTGTAGA 59.458 47.619 6.20 0.00 0.00 2.59
3 4 1.990799 TCGCGAATGGTTCTGTGTAG 58.009 50.000 6.20 0.00 0.00 2.74
4 5 2.063266 GTTCGCGAATGGTTCTGTGTA 58.937 47.619 26.23 0.00 0.00 2.90
5 6 0.865769 GTTCGCGAATGGTTCTGTGT 59.134 50.000 26.23 0.00 0.00 3.72
6 7 1.148310 AGTTCGCGAATGGTTCTGTG 58.852 50.000 26.23 0.00 0.00 3.66
7 8 2.736144 TAGTTCGCGAATGGTTCTGT 57.264 45.000 26.23 5.17 0.00 3.41
8 9 3.616821 TGAATAGTTCGCGAATGGTTCTG 59.383 43.478 26.23 0.00 0.00 3.02
9 10 3.857052 TGAATAGTTCGCGAATGGTTCT 58.143 40.909 26.23 18.49 0.00 3.01
10 11 4.270084 TCATGAATAGTTCGCGAATGGTTC 59.730 41.667 26.23 24.79 0.00 3.62
11 12 4.034048 GTCATGAATAGTTCGCGAATGGTT 59.966 41.667 26.23 18.45 0.00 3.67
12 13 3.555956 GTCATGAATAGTTCGCGAATGGT 59.444 43.478 26.23 15.00 0.00 3.55
13 14 3.555547 TGTCATGAATAGTTCGCGAATGG 59.444 43.478 26.23 8.49 0.00 3.16
14 15 4.504097 TCTGTCATGAATAGTTCGCGAATG 59.496 41.667 26.23 16.83 0.00 2.67
15 16 4.682787 TCTGTCATGAATAGTTCGCGAAT 58.317 39.130 26.23 15.84 0.00 3.34
16 17 4.104696 TCTGTCATGAATAGTTCGCGAA 57.895 40.909 19.38 19.38 0.00 4.70
17 18 3.775661 TCTGTCATGAATAGTTCGCGA 57.224 42.857 3.71 3.71 0.00 5.87
18 19 5.233050 AGAAATCTGTCATGAATAGTTCGCG 59.767 40.000 0.00 0.00 0.00 5.87
19 20 6.478344 AGAGAAATCTGTCATGAATAGTTCGC 59.522 38.462 0.00 3.25 0.00 4.70
20 21 8.417780 AAGAGAAATCTGTCATGAATAGTTCG 57.582 34.615 0.00 0.00 0.00 3.95
87 88 9.923143 CATCACATATTAAGATAACCCGTAGAA 57.077 33.333 0.00 0.00 0.00 2.10
88 89 9.085645 ACATCACATATTAAGATAACCCGTAGA 57.914 33.333 0.00 0.00 0.00 2.59
89 90 9.140286 CACATCACATATTAAGATAACCCGTAG 57.860 37.037 0.00 0.00 0.00 3.51
90 91 8.862085 TCACATCACATATTAAGATAACCCGTA 58.138 33.333 0.00 0.00 0.00 4.02
91 92 7.732025 TCACATCACATATTAAGATAACCCGT 58.268 34.615 0.00 0.00 0.00 5.28
92 93 8.601845 TTCACATCACATATTAAGATAACCCG 57.398 34.615 0.00 0.00 0.00 5.28
93 94 9.778741 TCTTCACATCACATATTAAGATAACCC 57.221 33.333 0.00 0.00 0.00 4.11
98 99 8.913487 TGCATCTTCACATCACATATTAAGAT 57.087 30.769 0.00 0.00 33.63 2.40
99 100 8.913487 ATGCATCTTCACATCACATATTAAGA 57.087 30.769 0.00 0.00 0.00 2.10
142 143 9.534565 TCCGAAATTCAAATTTAAACATTGTGA 57.465 25.926 12.70 0.00 38.64 3.58
143 144 9.579610 GTCCGAAATTCAAATTTAAACATTGTG 57.420 29.630 12.70 0.00 38.64 3.33
144 145 8.484008 CGTCCGAAATTCAAATTTAAACATTGT 58.516 29.630 12.70 0.00 38.64 2.71
145 146 7.474025 GCGTCCGAAATTCAAATTTAAACATTG 59.526 33.333 8.56 8.56 38.64 2.82
146 147 7.169982 TGCGTCCGAAATTCAAATTTAAACATT 59.830 29.630 0.86 0.00 38.64 2.71
147 148 6.642950 TGCGTCCGAAATTCAAATTTAAACAT 59.357 30.769 0.86 0.00 38.64 2.71
148 149 5.977725 TGCGTCCGAAATTCAAATTTAAACA 59.022 32.000 0.86 0.00 38.64 2.83
149 150 6.441099 TGCGTCCGAAATTCAAATTTAAAC 57.559 33.333 0.86 0.64 38.64 2.01
150 151 6.144724 CCTTGCGTCCGAAATTCAAATTTAAA 59.855 34.615 0.86 0.00 38.64 1.52
151 152 5.631512 CCTTGCGTCCGAAATTCAAATTTAA 59.368 36.000 0.86 0.00 38.64 1.52
152 153 5.157781 CCTTGCGTCCGAAATTCAAATTTA 58.842 37.500 0.86 0.00 38.64 1.40
153 154 3.987220 CCTTGCGTCCGAAATTCAAATTT 59.013 39.130 0.44 0.44 41.06 1.82
154 155 3.574614 CCTTGCGTCCGAAATTCAAATT 58.425 40.909 0.00 0.00 0.00 1.82
155 156 2.671070 GCCTTGCGTCCGAAATTCAAAT 60.671 45.455 0.00 0.00 0.00 2.32
156 157 1.335506 GCCTTGCGTCCGAAATTCAAA 60.336 47.619 0.00 0.00 0.00 2.69
157 158 0.239879 GCCTTGCGTCCGAAATTCAA 59.760 50.000 0.00 0.00 0.00 2.69
158 159 0.886938 TGCCTTGCGTCCGAAATTCA 60.887 50.000 0.00 0.00 0.00 2.57
159 160 0.454452 GTGCCTTGCGTCCGAAATTC 60.454 55.000 0.00 0.00 0.00 2.17
160 161 1.169661 TGTGCCTTGCGTCCGAAATT 61.170 50.000 0.00 0.00 0.00 1.82
161 162 1.599518 TGTGCCTTGCGTCCGAAAT 60.600 52.632 0.00 0.00 0.00 2.17
162 163 2.203084 TGTGCCTTGCGTCCGAAA 60.203 55.556 0.00 0.00 0.00 3.46
163 164 2.970324 GTGTGCCTTGCGTCCGAA 60.970 61.111 0.00 0.00 0.00 4.30
167 168 4.012895 CACCGTGTGCCTTGCGTC 62.013 66.667 0.00 0.00 0.00 5.19
168 169 4.539083 TCACCGTGTGCCTTGCGT 62.539 61.111 0.00 0.00 32.98 5.24
169 170 4.012895 GTCACCGTGTGCCTTGCG 62.013 66.667 0.00 0.00 32.98 4.85
170 171 2.260869 ATGTCACCGTGTGCCTTGC 61.261 57.895 0.00 0.00 32.98 4.01
171 172 1.165907 ACATGTCACCGTGTGCCTTG 61.166 55.000 0.00 0.70 39.36 3.61
172 173 0.394938 TACATGTCACCGTGTGCCTT 59.605 50.000 0.00 0.00 40.96 4.35
173 174 0.394938 TTACATGTCACCGTGTGCCT 59.605 50.000 0.00 0.00 40.96 4.75
174 175 1.069500 GTTTACATGTCACCGTGTGCC 60.069 52.381 0.00 0.00 40.96 5.01
175 176 1.397945 CGTTTACATGTCACCGTGTGC 60.398 52.381 0.00 0.00 40.96 4.57
176 177 1.862201 ACGTTTACATGTCACCGTGTG 59.138 47.619 0.00 0.00 40.96 3.82
177 178 1.862201 CACGTTTACATGTCACCGTGT 59.138 47.619 24.42 8.54 43.24 4.49
178 179 1.397945 GCACGTTTACATGTCACCGTG 60.398 52.381 26.64 26.64 45.99 4.94
179 180 0.863144 GCACGTTTACATGTCACCGT 59.137 50.000 0.00 6.19 0.00 4.83
180 181 0.862490 TGCACGTTTACATGTCACCG 59.138 50.000 0.00 5.48 0.00 4.94
181 182 2.850321 CATGCACGTTTACATGTCACC 58.150 47.619 0.00 0.00 39.05 4.02
195 196 3.452474 GAGTAGATCAGGTGACATGCAC 58.548 50.000 10.63 10.63 46.98 4.57
196 197 2.432146 GGAGTAGATCAGGTGACATGCA 59.568 50.000 0.00 0.00 0.00 3.96
197 198 2.224161 GGGAGTAGATCAGGTGACATGC 60.224 54.545 0.00 0.00 0.00 4.06
198 199 3.303938 AGGGAGTAGATCAGGTGACATG 58.696 50.000 0.00 0.00 0.00 3.21
199 200 3.571590 GAGGGAGTAGATCAGGTGACAT 58.428 50.000 0.00 0.00 0.00 3.06
200 201 2.358300 GGAGGGAGTAGATCAGGTGACA 60.358 54.545 0.00 0.00 0.00 3.58
201 202 2.091555 AGGAGGGAGTAGATCAGGTGAC 60.092 54.545 0.00 0.00 0.00 3.67
202 203 2.218673 AGGAGGGAGTAGATCAGGTGA 58.781 52.381 0.00 0.00 0.00 4.02
203 204 2.765689 AGGAGGGAGTAGATCAGGTG 57.234 55.000 0.00 0.00 0.00 4.00
204 205 3.273618 AGAAAGGAGGGAGTAGATCAGGT 59.726 47.826 0.00 0.00 0.00 4.00
205 206 3.640967 CAGAAAGGAGGGAGTAGATCAGG 59.359 52.174 0.00 0.00 0.00 3.86
206 207 3.640967 CCAGAAAGGAGGGAGTAGATCAG 59.359 52.174 0.00 0.00 41.22 2.90
207 208 3.012959 ACCAGAAAGGAGGGAGTAGATCA 59.987 47.826 0.00 0.00 41.22 2.92
208 209 3.648739 ACCAGAAAGGAGGGAGTAGATC 58.351 50.000 0.00 0.00 41.22 2.75
209 210 3.786213 ACCAGAAAGGAGGGAGTAGAT 57.214 47.619 0.00 0.00 41.22 1.98
210 211 3.562108 AACCAGAAAGGAGGGAGTAGA 57.438 47.619 0.00 0.00 41.22 2.59
211 212 5.959583 ATAAACCAGAAAGGAGGGAGTAG 57.040 43.478 0.00 0.00 41.22 2.57
212 213 6.386050 CCTTATAAACCAGAAAGGAGGGAGTA 59.614 42.308 0.00 0.00 40.85 2.59
213 214 5.191921 CCTTATAAACCAGAAAGGAGGGAGT 59.808 44.000 0.00 0.00 40.85 3.85
214 215 5.685728 CCTTATAAACCAGAAAGGAGGGAG 58.314 45.833 0.00 0.00 40.85 4.30
215 216 4.079958 GCCTTATAAACCAGAAAGGAGGGA 60.080 45.833 4.19 0.00 40.85 4.20
216 217 4.079730 AGCCTTATAAACCAGAAAGGAGGG 60.080 45.833 4.19 0.00 40.85 4.30
217 218 5.117406 AGCCTTATAAACCAGAAAGGAGG 57.883 43.478 4.19 0.00 40.85 4.30
218 219 5.745227 TGAGCCTTATAAACCAGAAAGGAG 58.255 41.667 4.19 0.00 40.85 3.69
219 220 5.772393 TGAGCCTTATAAACCAGAAAGGA 57.228 39.130 4.19 0.00 40.85 3.36
220 221 7.122650 TGAATTGAGCCTTATAAACCAGAAAGG 59.877 37.037 0.00 0.00 45.67 3.11
221 222 8.055279 TGAATTGAGCCTTATAAACCAGAAAG 57.945 34.615 0.00 0.00 0.00 2.62
222 223 8.415950 TTGAATTGAGCCTTATAAACCAGAAA 57.584 30.769 0.00 0.00 0.00 2.52
223 224 8.415950 TTTGAATTGAGCCTTATAAACCAGAA 57.584 30.769 0.00 0.00 0.00 3.02
224 225 8.415950 TTTTGAATTGAGCCTTATAAACCAGA 57.584 30.769 0.00 0.00 0.00 3.86
225 226 9.657419 ATTTTTGAATTGAGCCTTATAAACCAG 57.343 29.630 0.00 0.00 0.00 4.00
226 227 9.651913 GATTTTTGAATTGAGCCTTATAAACCA 57.348 29.630 0.00 0.00 0.00 3.67
227 228 9.875691 AGATTTTTGAATTGAGCCTTATAAACC 57.124 29.630 0.00 0.00 0.00 3.27
231 232 8.686334 GGTGAGATTTTTGAATTGAGCCTTATA 58.314 33.333 0.00 0.00 0.00 0.98
232 233 7.178983 TGGTGAGATTTTTGAATTGAGCCTTAT 59.821 33.333 0.00 0.00 0.00 1.73
233 234 6.493115 TGGTGAGATTTTTGAATTGAGCCTTA 59.507 34.615 0.00 0.00 0.00 2.69
234 235 5.305128 TGGTGAGATTTTTGAATTGAGCCTT 59.695 36.000 0.00 0.00 0.00 4.35
235 236 4.834496 TGGTGAGATTTTTGAATTGAGCCT 59.166 37.500 0.00 0.00 0.00 4.58
236 237 5.138125 TGGTGAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 0.00 4.70
237 238 5.406477 GGTTGGTGAGATTTTTGAATTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
238 239 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
239 240 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
240 241 6.203338 CCTTGGTTGGTGAGATTTTTGAATTG 59.797 38.462 0.00 0.00 0.00 2.32
241 242 6.126796 ACCTTGGTTGGTGAGATTTTTGAATT 60.127 34.615 0.00 0.00 39.17 2.17
242 243 5.366477 ACCTTGGTTGGTGAGATTTTTGAAT 59.634 36.000 0.00 0.00 39.17 2.57
243 244 4.714308 ACCTTGGTTGGTGAGATTTTTGAA 59.286 37.500 0.00 0.00 39.17 2.69
244 245 4.285863 ACCTTGGTTGGTGAGATTTTTGA 58.714 39.130 0.00 0.00 39.17 2.69
245 246 4.670896 ACCTTGGTTGGTGAGATTTTTG 57.329 40.909 0.00 0.00 39.17 2.44
246 247 5.701224 TCTACCTTGGTTGGTGAGATTTTT 58.299 37.500 0.00 0.00 41.05 1.94
247 248 5.319043 TCTACCTTGGTTGGTGAGATTTT 57.681 39.130 0.00 0.00 41.05 1.82
248 249 4.993705 TCTACCTTGGTTGGTGAGATTT 57.006 40.909 0.00 0.00 41.05 2.17
249 250 4.536090 TCATCTACCTTGGTTGGTGAGATT 59.464 41.667 11.95 0.00 41.05 2.40
250 251 4.104086 TCATCTACCTTGGTTGGTGAGAT 58.896 43.478 11.95 5.00 41.05 2.75
251 252 3.516586 TCATCTACCTTGGTTGGTGAGA 58.483 45.455 11.95 2.97 41.05 3.27
252 253 3.981071 TCATCTACCTTGGTTGGTGAG 57.019 47.619 11.95 0.00 41.05 3.51
253 254 3.843619 TCATCATCTACCTTGGTTGGTGA 59.156 43.478 16.81 16.81 41.05 4.02
254 255 4.194640 CTCATCATCTACCTTGGTTGGTG 58.805 47.826 7.94 7.94 41.05 4.17
255 256 3.846588 ACTCATCATCTACCTTGGTTGGT 59.153 43.478 0.00 0.00 43.66 3.67
256 257 4.194640 CACTCATCATCTACCTTGGTTGG 58.805 47.826 0.00 0.00 0.00 3.77
257 258 4.194640 CCACTCATCATCTACCTTGGTTG 58.805 47.826 0.00 0.00 0.00 3.77
258 259 3.846588 ACCACTCATCATCTACCTTGGTT 59.153 43.478 0.00 0.00 31.99 3.67
259 260 3.198635 CACCACTCATCATCTACCTTGGT 59.801 47.826 0.00 0.00 36.53 3.67
260 261 3.432749 CCACCACTCATCATCTACCTTGG 60.433 52.174 0.00 0.00 0.00 3.61
261 262 3.452264 TCCACCACTCATCATCTACCTTG 59.548 47.826 0.00 0.00 0.00 3.61
262 263 3.724478 TCCACCACTCATCATCTACCTT 58.276 45.455 0.00 0.00 0.00 3.50
263 264 3.404869 TCCACCACTCATCATCTACCT 57.595 47.619 0.00 0.00 0.00 3.08
264 265 4.696479 ATTCCACCACTCATCATCTACC 57.304 45.455 0.00 0.00 0.00 3.18
265 266 8.682936 AAAATATTCCACCACTCATCATCTAC 57.317 34.615 0.00 0.00 0.00 2.59
307 308 9.815936 GAGAAAAACAAAAGCATTAATTGGATG 57.184 29.630 0.00 0.00 0.00 3.51
308 309 9.558396 TGAGAAAAACAAAAGCATTAATTGGAT 57.442 25.926 0.00 0.00 0.00 3.41
309 310 8.954950 TGAGAAAAACAAAAGCATTAATTGGA 57.045 26.923 0.00 0.00 0.00 3.53
377 378 4.109766 CTGACCAATGCATGCACTTTATG 58.890 43.478 25.37 16.06 0.00 1.90
378 379 3.765511 ACTGACCAATGCATGCACTTTAT 59.234 39.130 25.37 7.83 0.00 1.40
379 380 3.156293 ACTGACCAATGCATGCACTTTA 58.844 40.909 25.37 6.77 0.00 1.85
380 381 1.965643 ACTGACCAATGCATGCACTTT 59.034 42.857 25.37 12.10 0.00 2.66
381 382 1.624336 ACTGACCAATGCATGCACTT 58.376 45.000 25.37 15.39 0.00 3.16
382 383 1.624336 AACTGACCAATGCATGCACT 58.376 45.000 25.37 10.02 0.00 4.40
383 384 2.443887 AAACTGACCAATGCATGCAC 57.556 45.000 25.37 10.66 0.00 4.57
384 385 2.629137 AGAAAACTGACCAATGCATGCA 59.371 40.909 25.04 25.04 0.00 3.96
385 386 3.057033 AGAGAAAACTGACCAATGCATGC 60.057 43.478 11.82 11.82 0.00 4.06
386 387 4.778534 AGAGAAAACTGACCAATGCATG 57.221 40.909 0.00 0.00 0.00 4.06
387 388 6.899393 TTAAGAGAAAACTGACCAATGCAT 57.101 33.333 0.00 0.00 0.00 3.96
388 389 6.899393 ATTAAGAGAAAACTGACCAATGCA 57.101 33.333 0.00 0.00 0.00 3.96
389 390 8.045176 AGTATTAAGAGAAAACTGACCAATGC 57.955 34.615 0.00 0.00 0.00 3.56
390 391 9.831737 CAAGTATTAAGAGAAAACTGACCAATG 57.168 33.333 0.00 0.00 0.00 2.82
391 392 8.515414 GCAAGTATTAAGAGAAAACTGACCAAT 58.485 33.333 0.00 0.00 0.00 3.16
392 393 7.500892 TGCAAGTATTAAGAGAAAACTGACCAA 59.499 33.333 0.00 0.00 0.00 3.67
393 394 6.995686 TGCAAGTATTAAGAGAAAACTGACCA 59.004 34.615 0.00 0.00 0.00 4.02
394 395 7.435068 TGCAAGTATTAAGAGAAAACTGACC 57.565 36.000 0.00 0.00 0.00 4.02
395 396 7.483059 GCATGCAAGTATTAAGAGAAAACTGAC 59.517 37.037 14.21 0.00 0.00 3.51
396 397 7.174772 TGCATGCAAGTATTAAGAGAAAACTGA 59.825 33.333 20.30 0.00 0.00 3.41
397 398 7.307694 TGCATGCAAGTATTAAGAGAAAACTG 58.692 34.615 20.30 0.00 0.00 3.16
398 399 7.452880 TGCATGCAAGTATTAAGAGAAAACT 57.547 32.000 20.30 0.00 0.00 2.66
399 400 8.589629 CATTGCATGCAAGTATTAAGAGAAAAC 58.410 33.333 34.15 0.00 39.47 2.43
400 401 8.522003 TCATTGCATGCAAGTATTAAGAGAAAA 58.478 29.630 34.15 9.52 39.47 2.29
401 402 8.054152 TCATTGCATGCAAGTATTAAGAGAAA 57.946 30.769 34.15 10.19 39.47 2.52
402 403 7.628769 TCATTGCATGCAAGTATTAAGAGAA 57.371 32.000 34.15 10.64 39.47 2.87
403 404 7.812690 ATCATTGCATGCAAGTATTAAGAGA 57.187 32.000 34.15 20.12 39.47 3.10
404 405 8.867112 AAATCATTGCATGCAAGTATTAAGAG 57.133 30.769 34.15 16.39 39.47 2.85
408 409 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
409 410 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
410 411 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
411 412 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
412 413 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
413 414 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
414 415 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
415 416 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
416 417 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
417 418 5.813157 TCAAGGTGCATTAAATCATTGCATG 59.187 36.000 4.14 0.11 46.90 4.06
418 419 5.979993 TCAAGGTGCATTAAATCATTGCAT 58.020 33.333 4.14 0.00 46.90 3.96
419 420 5.402997 TCAAGGTGCATTAAATCATTGCA 57.597 34.783 0.00 0.00 43.63 4.08
420 421 5.870978 ACTTCAAGGTGCATTAAATCATTGC 59.129 36.000 0.00 0.00 36.91 3.56
421 422 7.274904 CAGACTTCAAGGTGCATTAAATCATTG 59.725 37.037 0.00 0.00 0.00 2.82
422 423 7.177216 TCAGACTTCAAGGTGCATTAAATCATT 59.823 33.333 0.00 0.00 0.00 2.57
423 424 6.660521 TCAGACTTCAAGGTGCATTAAATCAT 59.339 34.615 0.00 0.00 0.00 2.45
424 425 6.003326 TCAGACTTCAAGGTGCATTAAATCA 58.997 36.000 0.00 0.00 0.00 2.57
425 426 6.500684 TCAGACTTCAAGGTGCATTAAATC 57.499 37.500 0.00 0.00 0.00 2.17
426 427 6.265196 TGTTCAGACTTCAAGGTGCATTAAAT 59.735 34.615 0.00 0.00 0.00 1.40
427 428 5.592282 TGTTCAGACTTCAAGGTGCATTAAA 59.408 36.000 0.00 0.00 0.00 1.52
428 429 5.129634 TGTTCAGACTTCAAGGTGCATTAA 58.870 37.500 0.00 0.00 0.00 1.40
429 430 4.713553 TGTTCAGACTTCAAGGTGCATTA 58.286 39.130 0.00 0.00 0.00 1.90
430 431 3.554934 TGTTCAGACTTCAAGGTGCATT 58.445 40.909 0.00 0.00 0.00 3.56
431 432 3.213206 TGTTCAGACTTCAAGGTGCAT 57.787 42.857 0.00 0.00 0.00 3.96
432 433 2.708216 TGTTCAGACTTCAAGGTGCA 57.292 45.000 0.00 0.00 0.00 4.57
433 434 2.880890 ACATGTTCAGACTTCAAGGTGC 59.119 45.455 0.00 0.00 0.00 5.01
434 435 4.129380 TCACATGTTCAGACTTCAAGGTG 58.871 43.478 0.00 0.00 0.00 4.00
435 436 4.422073 TCACATGTTCAGACTTCAAGGT 57.578 40.909 0.00 0.00 0.00 3.50
436 437 4.155462 CCATCACATGTTCAGACTTCAAGG 59.845 45.833 0.00 0.00 0.00 3.61
437 438 4.155462 CCCATCACATGTTCAGACTTCAAG 59.845 45.833 0.00 0.00 0.00 3.02
438 439 4.074259 CCCATCACATGTTCAGACTTCAA 58.926 43.478 0.00 0.00 0.00 2.69
439 440 3.559811 CCCCATCACATGTTCAGACTTCA 60.560 47.826 0.00 0.00 0.00 3.02
440 441 3.012518 CCCCATCACATGTTCAGACTTC 58.987 50.000 0.00 0.00 0.00 3.01
441 442 2.644299 TCCCCATCACATGTTCAGACTT 59.356 45.455 0.00 0.00 0.00 3.01
442 443 2.269023 TCCCCATCACATGTTCAGACT 58.731 47.619 0.00 0.00 0.00 3.24
443 444 2.749621 GTTCCCCATCACATGTTCAGAC 59.250 50.000 0.00 0.00 0.00 3.51
444 445 2.374839 TGTTCCCCATCACATGTTCAGA 59.625 45.455 0.00 0.00 0.00 3.27
445 446 2.794103 TGTTCCCCATCACATGTTCAG 58.206 47.619 0.00 0.00 0.00 3.02
446 447 2.967745 TGTTCCCCATCACATGTTCA 57.032 45.000 0.00 0.00 0.00 3.18
447 448 3.763360 TGATTGTTCCCCATCACATGTTC 59.237 43.478 0.00 0.00 0.00 3.18
448 449 3.777087 TGATTGTTCCCCATCACATGTT 58.223 40.909 0.00 0.00 0.00 2.71
449 450 3.454719 TGATTGTTCCCCATCACATGT 57.545 42.857 0.00 0.00 0.00 3.21
450 451 4.804868 TTTGATTGTTCCCCATCACATG 57.195 40.909 0.00 0.00 0.00 3.21
451 452 5.484644 TCAATTTGATTGTTCCCCATCACAT 59.515 36.000 0.00 0.00 41.02 3.21
452 453 4.837298 TCAATTTGATTGTTCCCCATCACA 59.163 37.500 0.00 0.00 41.02 3.58
453 454 5.404466 TCAATTTGATTGTTCCCCATCAC 57.596 39.130 0.00 0.00 41.02 3.06
454 455 4.081531 GCTCAATTTGATTGTTCCCCATCA 60.082 41.667 0.00 0.00 41.02 3.07
455 456 4.436332 GCTCAATTTGATTGTTCCCCATC 58.564 43.478 0.00 0.00 41.02 3.51
456 457 3.198417 GGCTCAATTTGATTGTTCCCCAT 59.802 43.478 0.00 0.00 41.02 4.00
457 458 2.566724 GGCTCAATTTGATTGTTCCCCA 59.433 45.455 0.00 0.00 41.02 4.96
458 459 2.833943 AGGCTCAATTTGATTGTTCCCC 59.166 45.455 0.00 0.00 41.02 4.81
459 460 4.541973 AAGGCTCAATTTGATTGTTCCC 57.458 40.909 0.00 1.39 41.02 3.97
460 461 9.651913 TTTTATAAGGCTCAATTTGATTGTTCC 57.348 29.630 0.00 4.03 41.02 3.62
463 464 9.603921 CCATTTTATAAGGCTCAATTTGATTGT 57.396 29.630 0.00 0.00 41.02 2.71
464 465 9.820725 TCCATTTTATAAGGCTCAATTTGATTG 57.179 29.630 0.00 0.00 41.57 2.67
506 507 9.819267 CTTCTTTTCGGTTTATAGGACTTATCT 57.181 33.333 0.00 0.00 0.00 1.98
507 508 9.043079 CCTTCTTTTCGGTTTATAGGACTTATC 57.957 37.037 0.00 0.00 0.00 1.75
508 509 7.991460 CCCTTCTTTTCGGTTTATAGGACTTAT 59.009 37.037 0.00 0.00 0.00 1.73
509 510 7.180766 TCCCTTCTTTTCGGTTTATAGGACTTA 59.819 37.037 0.00 0.00 0.00 2.24
510 511 6.013119 TCCCTTCTTTTCGGTTTATAGGACTT 60.013 38.462 0.00 0.00 0.00 3.01
511 512 5.486419 TCCCTTCTTTTCGGTTTATAGGACT 59.514 40.000 0.00 0.00 0.00 3.85
512 513 5.737860 TCCCTTCTTTTCGGTTTATAGGAC 58.262 41.667 0.00 0.00 0.00 3.85
513 514 5.486419 ACTCCCTTCTTTTCGGTTTATAGGA 59.514 40.000 0.00 0.00 0.00 2.94
514 515 5.742063 ACTCCCTTCTTTTCGGTTTATAGG 58.258 41.667 0.00 0.00 0.00 2.57
515 516 7.985752 ACATACTCCCTTCTTTTCGGTTTATAG 59.014 37.037 0.00 0.00 0.00 1.31
516 517 7.854337 ACATACTCCCTTCTTTTCGGTTTATA 58.146 34.615 0.00 0.00 0.00 0.98
517 518 6.718294 ACATACTCCCTTCTTTTCGGTTTAT 58.282 36.000 0.00 0.00 0.00 1.40
518 519 6.117975 ACATACTCCCTTCTTTTCGGTTTA 57.882 37.500 0.00 0.00 0.00 2.01
519 520 4.981812 ACATACTCCCTTCTTTTCGGTTT 58.018 39.130 0.00 0.00 0.00 3.27
520 521 4.565028 GGACATACTCCCTTCTTTTCGGTT 60.565 45.833 0.00 0.00 31.83 4.44
521 522 3.055312 GGACATACTCCCTTCTTTTCGGT 60.055 47.826 0.00 0.00 31.83 4.69
522 523 3.532542 GGACATACTCCCTTCTTTTCGG 58.467 50.000 0.00 0.00 31.83 4.30
523 524 3.187700 CGGACATACTCCCTTCTTTTCG 58.812 50.000 0.00 0.00 35.21 3.46
524 525 2.937149 GCGGACATACTCCCTTCTTTTC 59.063 50.000 0.00 0.00 35.21 2.29
525 526 2.572104 AGCGGACATACTCCCTTCTTTT 59.428 45.455 0.00 0.00 35.21 2.27
526 527 2.168728 GAGCGGACATACTCCCTTCTTT 59.831 50.000 0.00 0.00 35.21 2.52
527 528 1.757699 GAGCGGACATACTCCCTTCTT 59.242 52.381 0.00 0.00 35.21 2.52
528 529 1.063567 AGAGCGGACATACTCCCTTCT 60.064 52.381 0.00 0.00 35.21 2.85
529 530 1.404843 AGAGCGGACATACTCCCTTC 58.595 55.000 0.00 0.00 35.21 3.46
530 531 2.750141 TAGAGCGGACATACTCCCTT 57.250 50.000 0.00 0.00 35.21 3.95
531 532 2.588620 CTTAGAGCGGACATACTCCCT 58.411 52.381 0.00 0.00 35.21 4.20
532 533 1.000052 GCTTAGAGCGGACATACTCCC 60.000 57.143 0.00 0.00 35.21 4.30
533 534 1.681793 TGCTTAGAGCGGACATACTCC 59.318 52.381 0.00 0.00 46.26 3.85
534 535 3.651803 ATGCTTAGAGCGGACATACTC 57.348 47.619 0.00 0.00 46.26 2.59
535 536 3.889538 TGTATGCTTAGAGCGGACATACT 59.110 43.478 11.44 0.00 46.26 2.12
536 537 4.238761 TGTATGCTTAGAGCGGACATAC 57.761 45.455 0.00 0.00 46.26 2.39
537 538 4.929819 TTGTATGCTTAGAGCGGACATA 57.070 40.909 7.32 0.00 46.26 2.29
538 539 3.819564 TTGTATGCTTAGAGCGGACAT 57.180 42.857 7.32 0.00 46.26 3.06
539 540 3.118775 ACATTGTATGCTTAGAGCGGACA 60.119 43.478 3.48 3.48 46.26 4.02
540 541 3.246226 CACATTGTATGCTTAGAGCGGAC 59.754 47.826 0.00 0.00 46.26 4.79
541 542 3.457234 CACATTGTATGCTTAGAGCGGA 58.543 45.455 0.00 0.00 46.26 5.54
542 543 2.032549 GCACATTGTATGCTTAGAGCGG 60.033 50.000 0.00 0.00 46.26 5.52
543 544 2.347939 CGCACATTGTATGCTTAGAGCG 60.348 50.000 0.00 0.00 46.26 5.03
544 545 2.032549 CCGCACATTGTATGCTTAGAGC 60.033 50.000 0.00 0.00 41.10 4.09
545 546 2.032549 GCCGCACATTGTATGCTTAGAG 60.033 50.000 0.00 0.00 41.10 2.43
546 547 1.939934 GCCGCACATTGTATGCTTAGA 59.060 47.619 0.00 0.00 41.10 2.10
547 548 1.002468 GGCCGCACATTGTATGCTTAG 60.002 52.381 0.00 0.00 41.10 2.18
548 549 1.021202 GGCCGCACATTGTATGCTTA 58.979 50.000 0.00 0.00 41.10 3.09
549 550 1.666209 GGGCCGCACATTGTATGCTT 61.666 55.000 0.00 0.00 41.10 3.91
550 551 2.120909 GGGCCGCACATTGTATGCT 61.121 57.895 0.00 0.00 41.10 3.79
551 552 2.412937 GGGCCGCACATTGTATGC 59.587 61.111 0.00 0.00 39.81 3.14
552 553 2.489275 GGGGGCCGCACATTGTATG 61.489 63.158 22.80 0.00 0.00 2.39
579 580 3.645268 ATTGGACGCCCTTGCTCCC 62.645 63.158 0.00 0.00 35.29 4.30
580 581 2.044946 ATTGGACGCCCTTGCTCC 60.045 61.111 0.00 0.00 36.15 4.70
585 586 1.846007 TATTTGCATTGGACGCCCTT 58.154 45.000 0.00 0.00 0.00 3.95
587 588 2.621055 TGTATATTTGCATTGGACGCCC 59.379 45.455 0.00 0.00 0.00 6.13
588 589 3.980646 TGTATATTTGCATTGGACGCC 57.019 42.857 0.00 0.00 0.00 5.68
589 590 6.201556 CAAATGTATATTTGCATTGGACGC 57.798 37.500 11.40 0.00 44.59 5.19
612 613 2.191128 ACTCTGAGGCAAACATGTCC 57.809 50.000 9.85 0.00 0.00 4.02
614 615 1.610522 GCAACTCTGAGGCAAACATGT 59.389 47.619 9.85 0.00 0.00 3.21
615 616 1.884579 AGCAACTCTGAGGCAAACATG 59.115 47.619 9.85 0.00 0.00 3.21
616 617 2.283145 AGCAACTCTGAGGCAAACAT 57.717 45.000 9.85 0.00 0.00 2.71
617 618 2.057137 AAGCAACTCTGAGGCAAACA 57.943 45.000 9.85 0.00 0.00 2.83
619 620 3.820557 ACTAAAGCAACTCTGAGGCAAA 58.179 40.909 9.85 0.00 0.00 3.68
623 628 6.578023 AGCTAATACTAAAGCAACTCTGAGG 58.422 40.000 9.85 0.00 41.32 3.86
632 637 8.560355 TCAATTGACAAGCTAATACTAAAGCA 57.440 30.769 3.38 0.00 41.32 3.91
638 643 7.167635 CGTACGATCAATTGACAAGCTAATACT 59.832 37.037 10.44 0.00 0.00 2.12
655 660 2.918600 CCAAATTCACGACGTACGATCA 59.081 45.455 24.41 0.00 45.77 2.92
688 697 0.649475 CGCATGGAGCTCTCTTTTCG 59.351 55.000 14.64 6.48 42.61 3.46
716 725 0.824759 AGGCGCTCTAGTAAAGGTGG 59.175 55.000 7.64 0.00 0.00 4.61
737 746 3.452755 AATCATGCGAGACACGGAATA 57.547 42.857 0.00 0.00 46.49 1.75
1004 1050 2.881403 GCCACATGAGAATGGTGAACCT 60.881 50.000 0.00 0.00 38.34 3.50
1016 1062 1.134280 CCAGGTAAGAGGCCACATGAG 60.134 57.143 5.01 0.00 0.00 2.90
1017 1063 0.911769 CCAGGTAAGAGGCCACATGA 59.088 55.000 5.01 0.00 0.00 3.07
1024 1070 1.740718 CGCTTTCTCCAGGTAAGAGGC 60.741 57.143 0.00 1.06 31.96 4.70
1029 1075 1.198759 AGGCCGCTTTCTCCAGGTAA 61.199 55.000 0.00 0.00 0.00 2.85
1228 1277 1.891919 GGTTTCTGACGGTGCAGCA 60.892 57.895 17.33 0.00 35.86 4.41
1255 1304 4.524714 AGACAGAGCTAGAGTTAAAGTGCA 59.475 41.667 0.00 0.00 0.00 4.57
1262 1311 6.596106 CACTTCACTAGACAGAGCTAGAGTTA 59.404 42.308 0.00 0.00 40.20 2.24
1290 1339 4.808895 TCACACCGACATGCATACTTAATC 59.191 41.667 0.00 0.00 0.00 1.75
1291 1340 4.765273 TCACACCGACATGCATACTTAAT 58.235 39.130 0.00 0.00 0.00 1.40
1307 1368 1.896220 TCTCAGTGGCATTTCACACC 58.104 50.000 0.00 0.00 39.93 4.16
1442 1509 2.185867 GAGTTCGGGGTGCGCATA 59.814 61.111 15.91 0.00 0.00 3.14
1680 1753 3.084786 ACGTGTAGGTGGTAGGAGTAAC 58.915 50.000 0.00 0.00 0.00 2.50
1682 1755 3.084039 CAACGTGTAGGTGGTAGGAGTA 58.916 50.000 0.00 0.00 32.78 2.59
1683 1756 1.891150 CAACGTGTAGGTGGTAGGAGT 59.109 52.381 0.00 0.00 32.78 3.85
1684 1757 2.649331 CAACGTGTAGGTGGTAGGAG 57.351 55.000 0.00 0.00 32.78 3.69
1700 1780 0.108138 ACAGATAGCTCCGTGCCAAC 60.108 55.000 0.00 0.00 44.23 3.77
1701 1781 0.613260 AACAGATAGCTCCGTGCCAA 59.387 50.000 0.00 0.00 44.23 4.52
1702 1782 0.108186 CAACAGATAGCTCCGTGCCA 60.108 55.000 0.00 0.00 44.23 4.92
1703 1783 0.175760 TCAACAGATAGCTCCGTGCC 59.824 55.000 0.00 0.00 44.23 5.01
1704 1784 2.231215 ATCAACAGATAGCTCCGTGC 57.769 50.000 0.00 0.00 43.29 5.34
1705 1785 6.923508 TGTAAATATCAACAGATAGCTCCGTG 59.076 38.462 0.00 0.00 0.00 4.94
1747 1967 0.103208 CGGCTCCATCCTACACAGAC 59.897 60.000 0.00 0.00 0.00 3.51
1795 2018 4.126390 CGCTTGCAGCTCGTCACG 62.126 66.667 0.00 0.00 39.60 4.35
1796 2019 3.782244 CCGCTTGCAGCTCGTCAC 61.782 66.667 0.00 0.00 39.60 3.67
1870 2096 2.045926 ACATTCTCCGTGCAGCCC 60.046 61.111 0.00 0.00 0.00 5.19
1882 2108 0.908198 AGAGCTCCAGGGTGACATTC 59.092 55.000 10.93 0.00 0.00 2.67
1885 2111 1.194781 GGAAGAGCTCCAGGGTGACA 61.195 60.000 10.93 0.00 44.67 3.58
1998 2238 5.656213 AAATCAGAAGCTTTCCCAATGAG 57.344 39.130 0.00 0.00 0.00 2.90
2080 2324 3.255149 ACACACTCCACTAGTAGGAAACG 59.745 47.826 13.03 6.55 35.76 3.60
2119 2475 4.523083 TGTAGTAATCATGCCAAGAACCC 58.477 43.478 0.00 0.00 0.00 4.11
2128 2487 9.219603 TGGCTTTATTAGATGTAGTAATCATGC 57.780 33.333 0.00 0.00 0.00 4.06
2252 2611 1.580704 GTAACACGCGACCTGATTACG 59.419 52.381 15.93 0.00 0.00 3.18
2282 2641 0.664767 GAGCAGATCGTACCCGCATC 60.665 60.000 0.00 0.00 0.00 3.91
2283 2642 1.109920 AGAGCAGATCGTACCCGCAT 61.110 55.000 0.00 0.00 0.00 4.73
2284 2643 1.320344 AAGAGCAGATCGTACCCGCA 61.320 55.000 0.00 0.00 0.00 5.69
2285 2644 0.666913 TAAGAGCAGATCGTACCCGC 59.333 55.000 0.00 0.00 0.00 6.13
2286 2645 3.644884 AATAAGAGCAGATCGTACCCG 57.355 47.619 0.00 0.00 0.00 5.28
2287 2646 5.708877 ACTAATAAGAGCAGATCGTACCC 57.291 43.478 0.00 0.00 0.00 3.69
2388 2787 6.588756 TCGCCACTAATGTGAAAGTTTACTAG 59.411 38.462 0.00 0.00 46.55 2.57
2392 2791 7.820386 TCTTATCGCCACTAATGTGAAAGTTTA 59.180 33.333 0.00 0.00 46.55 2.01
2394 2793 6.170506 TCTTATCGCCACTAATGTGAAAGTT 58.829 36.000 0.00 0.00 46.55 2.66
2411 2810 7.201530 GGTTGGTGTAGATTTGAACTCTTATCG 60.202 40.741 0.00 0.00 0.00 2.92
2445 3246 8.458843 CCAAACCACCACTTAGTTGATATTTAG 58.541 37.037 0.00 0.00 0.00 1.85
2486 3287 6.472016 TCATTCATGGTTAGTTACAGCAAGA 58.528 36.000 0.00 0.00 0.00 3.02
2552 3353 2.696707 TGTAAGAGACACACCCTCGTTT 59.303 45.455 0.00 0.00 35.88 3.60
2615 3685 4.263550 TGGGTCATCTATTTTTGGAACGGA 60.264 41.667 0.00 0.00 0.00 4.69
2617 3687 5.183140 AGTTGGGTCATCTATTTTTGGAACG 59.817 40.000 0.00 0.00 0.00 3.95
2618 3688 6.590234 AGTTGGGTCATCTATTTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2619 3689 7.070571 ACAAAGTTGGGTCATCTATTTTTGGAA 59.929 33.333 0.00 0.00 0.00 3.53
2620 3690 6.553100 ACAAAGTTGGGTCATCTATTTTTGGA 59.447 34.615 0.00 0.00 0.00 3.53
2621 3691 6.758254 ACAAAGTTGGGTCATCTATTTTTGG 58.242 36.000 0.00 0.00 0.00 3.28
2622 3692 8.576442 AGTACAAAGTTGGGTCATCTATTTTTG 58.424 33.333 0.00 0.00 0.00 2.44
2623 3693 8.706322 AGTACAAAGTTGGGTCATCTATTTTT 57.294 30.769 0.00 0.00 0.00 1.94
2624 3694 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2625 3695 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2626 3696 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2627 3697 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2628 3698 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2629 3699 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2630 3700 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2631 3701 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
2632 3702 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
2633 3703 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
2634 3704 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
2635 3705 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
2671 3741 9.389570 CCGTTTTAAAATAGACGACTCAATTTT 57.610 29.630 10.85 11.31 37.69 1.82
2672 3742 8.776470 TCCGTTTTAAAATAGACGACTCAATTT 58.224 29.630 10.85 0.00 37.69 1.82
2673 3743 8.314143 TCCGTTTTAAAATAGACGACTCAATT 57.686 30.769 10.85 0.00 37.69 2.32
2674 3744 7.064253 CCTCCGTTTTAAAATAGACGACTCAAT 59.936 37.037 10.85 0.00 37.69 2.57
2675 3745 6.366877 CCTCCGTTTTAAAATAGACGACTCAA 59.633 38.462 10.85 0.00 37.69 3.02
2676 3746 5.865552 CCTCCGTTTTAAAATAGACGACTCA 59.134 40.000 10.85 0.00 37.69 3.41
2677 3747 5.290400 CCCTCCGTTTTAAAATAGACGACTC 59.710 44.000 10.85 0.00 37.69 3.36
2678 3748 5.047092 TCCCTCCGTTTTAAAATAGACGACT 60.047 40.000 10.85 0.00 37.69 4.18
2679 3749 5.170748 TCCCTCCGTTTTAAAATAGACGAC 58.829 41.667 10.85 0.00 37.69 4.34
2680 3750 5.047092 ACTCCCTCCGTTTTAAAATAGACGA 60.047 40.000 10.85 4.36 37.69 4.20
2681 3751 5.173664 ACTCCCTCCGTTTTAAAATAGACG 58.826 41.667 3.52 3.61 35.44 4.18
2682 3752 9.993454 ATATACTCCCTCCGTTTTAAAATAGAC 57.007 33.333 3.52 0.00 0.00 2.59
2684 3754 9.136952 CGATATACTCCCTCCGTTTTAAAATAG 57.863 37.037 3.52 1.99 0.00 1.73
2685 3755 8.641541 ACGATATACTCCCTCCGTTTTAAAATA 58.358 33.333 3.52 0.00 0.00 1.40
2686 3756 7.503549 ACGATATACTCCCTCCGTTTTAAAAT 58.496 34.615 3.52 0.00 0.00 1.82
2687 3757 6.877236 ACGATATACTCCCTCCGTTTTAAAA 58.123 36.000 0.00 0.00 0.00 1.52
2688 3758 6.469782 ACGATATACTCCCTCCGTTTTAAA 57.530 37.500 0.00 0.00 0.00 1.52
2689 3759 7.581213 TTACGATATACTCCCTCCGTTTTAA 57.419 36.000 0.00 0.00 0.00 1.52
2690 3760 7.581213 TTTACGATATACTCCCTCCGTTTTA 57.419 36.000 0.00 0.00 0.00 1.52
2691 3761 6.469782 TTTACGATATACTCCCTCCGTTTT 57.530 37.500 0.00 0.00 0.00 2.43
2692 3762 6.097412 AGTTTTACGATATACTCCCTCCGTTT 59.903 38.462 0.00 0.00 0.00 3.60
2693 3763 5.595952 AGTTTTACGATATACTCCCTCCGTT 59.404 40.000 0.00 0.00 0.00 4.44
2694 3764 5.009410 CAGTTTTACGATATACTCCCTCCGT 59.991 44.000 0.00 0.00 0.00 4.69
2695 3765 5.009410 ACAGTTTTACGATATACTCCCTCCG 59.991 44.000 0.00 0.00 0.00 4.63
2696 3766 6.040166 TCACAGTTTTACGATATACTCCCTCC 59.960 42.308 0.00 0.00 0.00 4.30
2697 3767 7.035840 TCACAGTTTTACGATATACTCCCTC 57.964 40.000 0.00 0.00 0.00 4.30
2698 3768 6.606395 ACTCACAGTTTTACGATATACTCCCT 59.394 38.462 0.00 0.00 0.00 4.20
2699 3769 6.803642 ACTCACAGTTTTACGATATACTCCC 58.196 40.000 0.00 0.00 0.00 4.30
2700 3770 8.592998 CAAACTCACAGTTTTACGATATACTCC 58.407 37.037 0.00 0.00 45.38 3.85
2701 3771 8.592998 CCAAACTCACAGTTTTACGATATACTC 58.407 37.037 0.00 0.00 45.38 2.59
2702 3772 7.548075 CCCAAACTCACAGTTTTACGATATACT 59.452 37.037 0.00 0.00 45.38 2.12
2703 3773 7.201582 CCCCAAACTCACAGTTTTACGATATAC 60.202 40.741 0.00 0.00 45.38 1.47
2704 3774 6.819649 CCCCAAACTCACAGTTTTACGATATA 59.180 38.462 0.00 0.00 45.38 0.86
2708 3778 3.207778 CCCCAAACTCACAGTTTTACGA 58.792 45.455 0.00 0.00 45.38 3.43
2709 3779 2.287368 GCCCCAAACTCACAGTTTTACG 60.287 50.000 0.00 0.00 45.38 3.18
2711 3781 3.019799 TGCCCCAAACTCACAGTTTTA 57.980 42.857 0.00 0.00 45.38 1.52
2738 3808 8.913656 GGAATGCTGAAAATATAGTACGAGTAC 58.086 37.037 5.32 5.32 36.35 2.73
2742 3812 8.725405 TTTGGAATGCTGAAAATATAGTACGA 57.275 30.769 0.00 0.00 0.00 3.43
2743 3813 9.599322 GATTTGGAATGCTGAAAATATAGTACG 57.401 33.333 0.00 0.00 0.00 3.67
2749 3819 9.542462 CAGAATGATTTGGAATGCTGAAAATAT 57.458 29.630 0.00 0.00 39.69 1.28
2824 3894 3.722147 ACGCTCAGCTCTTGGTATAATG 58.278 45.455 0.00 0.00 0.00 1.90
2833 3903 1.215117 GCTCAGACGCTCAGCTCTT 59.785 57.895 0.00 0.00 0.00 2.85
2940 4010 2.158842 GGCATACCAAGCATGTCTCTCT 60.159 50.000 0.00 0.00 35.26 3.10
2941 4011 2.216898 GGCATACCAAGCATGTCTCTC 58.783 52.381 0.00 0.00 35.26 3.20
2985 4058 3.067601 ACGTACGGTCTGATCATGCATAA 59.932 43.478 21.06 0.00 0.00 1.90
3013 4086 0.250234 TGCCATACAAAGCGAGCTCT 59.750 50.000 12.85 0.00 0.00 4.09
3097 4200 1.604593 ACGTACACAGTAGCCGGGT 60.605 57.895 12.58 12.58 0.00 5.28
3099 4202 1.153901 CCACGTACACAGTAGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
3108 4211 0.526662 CTGGAGGAGTCCACGTACAC 59.473 60.000 12.86 0.00 46.77 2.90
3118 4221 1.305718 GACCTGGAGCTGGAGGAGT 60.306 63.158 13.56 0.00 33.16 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.