Multiple sequence alignment - TraesCS2A01G513900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G513900 chr2A 100.000 1432 0 0 1 1432 738341044 738342475 0.000000e+00 2645.0
1 TraesCS2A01G513900 chr2A 100.000 1277 0 0 1775 3051 738342818 738344094 0.000000e+00 2359.0
2 TraesCS2A01G513900 chr2A 86.928 153 9 5 342 491 738341206 738341350 8.750000e-36 161.0
3 TraesCS2A01G513900 chr2A 86.928 153 9 5 163 307 738341385 738341534 8.750000e-36 161.0
4 TraesCS2A01G513900 chr2A 79.909 219 27 12 882 1084 738335798 738336015 8.820000e-31 145.0
5 TraesCS2A01G513900 chr2A 83.333 138 8 4 1937 2059 710264447 710264310 2.490000e-21 113.0
6 TraesCS2A01G513900 chr2A 91.667 60 5 0 1370 1429 738342314 738342373 1.950000e-12 84.2
7 TraesCS2A01G513900 chr2A 91.667 60 5 0 1271 1330 738342413 738342472 1.950000e-12 84.2
8 TraesCS2A01G513900 chr2D 90.131 1145 54 24 325 1432 606693919 606695041 0.000000e+00 1434.0
9 TraesCS2A01G513900 chr2D 91.319 576 27 12 1842 2402 606695465 606696032 0.000000e+00 765.0
10 TraesCS2A01G513900 chr2D 74.967 751 111 49 738 1424 571458807 571458070 1.080000e-69 274.0
11 TraesCS2A01G513900 chr2D 95.031 161 8 0 1251 1411 606694893 606695053 1.400000e-63 254.0
12 TraesCS2A01G513900 chr2D 94.969 159 6 2 2738 2895 606700498 606700655 6.530000e-62 248.0
13 TraesCS2A01G513900 chr2D 75.870 460 72 19 993 1424 571538244 571537796 6.670000e-47 198.0
14 TraesCS2A01G513900 chr2D 86.577 149 18 2 160 307 606693935 606694082 2.430000e-36 163.0
15 TraesCS2A01G513900 chr2D 90.435 115 5 5 2466 2580 606699556 606699664 2.450000e-31 147.0
16 TraesCS2A01G513900 chr2D 81.967 183 15 6 1895 2059 571457932 571457750 4.100000e-29 139.0
17 TraesCS2A01G513900 chr2D 91.753 97 8 0 988 1084 606690002 606690098 5.310000e-28 135.0
18 TraesCS2A01G513900 chr2D 95.294 85 4 0 2380 2464 606697319 606697403 5.310000e-28 135.0
19 TraesCS2A01G513900 chr2D 85.401 137 11 2 1925 2052 571537379 571537243 1.910000e-27 134.0
20 TraesCS2A01G513900 chr2D 89.474 76 8 0 1271 1346 606694979 606695054 2.500000e-16 97.1
21 TraesCS2A01G513900 chr2D 80.992 121 19 3 2776 2895 571456762 571456645 3.240000e-15 93.5
22 TraesCS2A01G513900 chr2D 91.667 60 5 0 1370 1429 606694913 606694972 1.950000e-12 84.2
23 TraesCS2A01G513900 chr2D 94.000 50 3 0 1383 1432 606695465 606695514 3.260000e-10 76.8
24 TraesCS2A01G513900 chr2B 88.695 1088 62 34 332 1376 738409531 738410600 0.000000e+00 1271.0
25 TraesCS2A01G513900 chr2B 91.720 314 17 5 2154 2464 738411316 738411623 7.820000e-116 427.0
26 TraesCS2A01G513900 chr2B 89.181 342 22 6 1833 2167 738410962 738411295 2.190000e-111 412.0
27 TraesCS2A01G513900 chr2B 87.162 148 17 2 160 307 738409540 738409685 1.880000e-37 167.0
28 TraesCS2A01G513900 chr2B 90.816 98 9 0 988 1085 738338180 738338277 6.860000e-27 132.0
29 TraesCS2A01G513900 chr2B 79.070 215 27 13 2695 2895 738412442 738412652 6.860000e-27 132.0
30 TraesCS2A01G513900 chr2B 79.255 188 18 8 1893 2059 683171494 683171307 8.940000e-21 111.0
31 TraesCS2A01G513900 chr2B 81.982 111 14 5 2788 2895 683170310 683170203 4.190000e-14 89.8
32 TraesCS2A01G513900 chr6D 81.897 116 16 5 1929 2040 390024968 390025082 3.240000e-15 93.5
33 TraesCS2A01G513900 chr6B 82.301 113 15 5 1932 2040 584080910 584080799 3.240000e-15 93.5
34 TraesCS2A01G513900 chr6A 81.897 116 16 5 1929 2040 536576293 536576407 3.240000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G513900 chr2A 738341044 738344094 3050 False 915.733333 2645 92.865000 1 3051 6 chr2A.!!$F2 3050
1 TraesCS2A01G513900 chr2D 606690002 606700655 10653 False 321.736364 1434 91.877273 160 2895 11 chr2D.!!$F1 2735
2 TraesCS2A01G513900 chr2B 738409531 738412652 3121 False 481.800000 1271 87.165600 160 2895 5 chr2B.!!$F2 2735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 3443 0.023354 GTACGAACGTTCAGCGATGC 59.977 55.0 26.71 7.34 44.77 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 6304 0.168788 CAAACGGGCTCTCGTACGTA 59.831 55.0 16.05 4.02 43.07 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.567848 AAATTACAAGTTTCATATAACAAGCCG 57.432 29.630 0.00 0.00 0.00 5.52
30 31 7.675962 TTACAAGTTTCATATAACAAGCCGT 57.324 32.000 0.00 0.00 0.00 5.68
31 32 8.774890 TTACAAGTTTCATATAACAAGCCGTA 57.225 30.769 0.00 0.00 0.00 4.02
32 33 7.675962 ACAAGTTTCATATAACAAGCCGTAA 57.324 32.000 0.00 0.00 0.00 3.18
33 34 7.748847 ACAAGTTTCATATAACAAGCCGTAAG 58.251 34.615 0.00 0.00 0.00 2.34
34 35 7.389607 ACAAGTTTCATATAACAAGCCGTAAGT 59.610 33.333 0.00 0.00 0.00 2.24
36 37 8.331730 AGTTTCATATAACAAGCCGTAAGTTT 57.668 30.769 0.00 0.00 0.00 2.66
37 38 8.234546 AGTTTCATATAACAAGCCGTAAGTTTG 58.765 33.333 0.00 0.00 36.46 2.93
38 39 7.908827 TTCATATAACAAGCCGTAAGTTTGA 57.091 32.000 0.00 0.00 35.03 2.69
39 40 7.908827 TCATATAACAAGCCGTAAGTTTGAA 57.091 32.000 0.00 0.00 35.03 2.69
40 41 7.745015 TCATATAACAAGCCGTAAGTTTGAAC 58.255 34.615 0.00 0.00 35.03 3.18
41 42 3.328237 AACAAGCCGTAAGTTTGAACG 57.672 42.857 0.00 0.00 38.80 3.95
42 43 2.553086 ACAAGCCGTAAGTTTGAACGA 58.447 42.857 0.00 0.00 41.55 3.85
43 44 3.135994 ACAAGCCGTAAGTTTGAACGAT 58.864 40.909 0.00 0.00 41.55 3.73
45 46 4.751098 ACAAGCCGTAAGTTTGAACGATTA 59.249 37.500 0.00 0.00 41.55 1.75
46 47 5.236911 ACAAGCCGTAAGTTTGAACGATTAA 59.763 36.000 0.00 0.00 41.55 1.40
47 48 5.927954 AGCCGTAAGTTTGAACGATTAAA 57.072 34.783 0.00 0.00 41.55 1.52
48 49 6.303021 AGCCGTAAGTTTGAACGATTAAAA 57.697 33.333 0.00 0.00 41.55 1.52
52 53 7.798052 GCCGTAAGTTTGAACGATTAAAACTTA 59.202 33.333 18.96 18.96 46.78 2.24
90 91 5.491070 CTCATACAGGATTCAACCACTTCA 58.509 41.667 0.00 0.00 0.00 3.02
91 92 5.245531 TCATACAGGATTCAACCACTTCAC 58.754 41.667 0.00 0.00 0.00 3.18
92 93 2.494059 ACAGGATTCAACCACTTCACG 58.506 47.619 0.00 0.00 0.00 4.35
93 94 2.104111 ACAGGATTCAACCACTTCACGA 59.896 45.455 0.00 0.00 0.00 4.35
94 95 3.138304 CAGGATTCAACCACTTCACGAA 58.862 45.455 0.00 0.00 0.00 3.85
96 97 4.003648 AGGATTCAACCACTTCACGAATC 58.996 43.478 0.00 0.00 40.67 2.52
100 101 1.289109 AACCACTTCACGAATCGCGG 61.289 55.000 6.13 0.00 46.49 6.46
108 109 1.876714 ACGAATCGCGGGACAATCG 60.877 57.895 23.37 23.37 46.49 3.34
109 110 1.587876 CGAATCGCGGGACAATCGA 60.588 57.895 21.68 5.12 36.03 3.59
110 111 1.540607 CGAATCGCGGGACAATCGAG 61.541 60.000 21.68 1.72 35.61 4.04
111 112 1.822250 GAATCGCGGGACAATCGAGC 61.822 60.000 6.13 0.00 35.61 5.03
116 117 4.467084 GGGACAATCGAGCGGCCA 62.467 66.667 10.72 0.00 0.00 5.36
117 118 2.892425 GGACAATCGAGCGGCCAG 60.892 66.667 2.24 0.00 0.00 4.85
118 119 2.892425 GACAATCGAGCGGCCAGG 60.892 66.667 2.24 0.00 0.00 4.45
121 122 4.408821 AATCGAGCGGCCAGGCAA 62.409 61.111 15.19 0.00 34.64 4.52
122 123 4.845580 ATCGAGCGGCCAGGCAAG 62.846 66.667 15.19 7.86 34.64 4.01
135 136 3.741476 GCAAGGCTTGGCTCGTGG 61.741 66.667 27.25 0.88 0.00 4.94
136 137 3.058160 CAAGGCTTGGCTCGTGGG 61.058 66.667 19.55 0.00 0.00 4.61
137 138 3.570212 AAGGCTTGGCTCGTGGGT 61.570 61.111 0.00 0.00 0.00 4.51
138 139 3.850098 AAGGCTTGGCTCGTGGGTG 62.850 63.158 0.00 0.00 0.00 4.61
145 146 4.468689 GCTCGTGGGTGCCCCTAC 62.469 72.222 11.10 1.56 45.70 3.18
149 150 2.995547 GTGGGTGCCCCTACGAAT 59.004 61.111 11.10 0.00 45.70 3.34
151 152 0.323087 GTGGGTGCCCCTACGAATTT 60.323 55.000 11.10 0.00 45.70 1.82
152 153 0.406361 TGGGTGCCCCTACGAATTTT 59.594 50.000 11.10 0.00 45.70 1.82
154 155 1.614850 GGGTGCCCCTACGAATTTTCA 60.615 52.381 3.16 0.00 41.34 2.69
155 156 2.164338 GGTGCCCCTACGAATTTTCAA 58.836 47.619 0.00 0.00 0.00 2.69
156 157 2.559231 GGTGCCCCTACGAATTTTCAAA 59.441 45.455 0.00 0.00 0.00 2.69
160 161 5.347635 GTGCCCCTACGAATTTTCAAATTTC 59.652 40.000 0.00 0.00 38.64 2.17
161 162 4.868171 GCCCCTACGAATTTTCAAATTTCC 59.132 41.667 0.00 0.00 38.64 3.13
162 163 5.099575 CCCCTACGAATTTTCAAATTTCCG 58.900 41.667 0.00 2.62 38.64 4.30
163 164 5.099575 CCCTACGAATTTTCAAATTTCCGG 58.900 41.667 0.00 0.00 38.64 5.14
164 165 5.336134 CCCTACGAATTTTCAAATTTCCGGT 60.336 40.000 0.00 5.01 38.64 5.28
165 166 6.127952 CCCTACGAATTTTCAAATTTCCGGTA 60.128 38.462 0.00 0.00 38.64 4.02
167 168 5.705902 ACGAATTTTCAAATTTCCGGTAGG 58.294 37.500 0.00 0.00 38.64 3.18
168 169 4.561213 CGAATTTTCAAATTTCCGGTAGGC 59.439 41.667 0.00 0.00 38.64 3.93
170 171 1.455248 TTCAAATTTCCGGTAGGCGG 58.545 50.000 0.00 0.00 37.47 6.13
172 173 0.393267 CAAATTTCCGGTAGGCGGGA 60.393 55.000 0.00 0.00 41.55 5.14
173 174 0.107361 AAATTTCCGGTAGGCGGGAG 60.107 55.000 0.00 0.00 43.57 4.30
174 175 1.269703 AATTTCCGGTAGGCGGGAGT 61.270 55.000 0.00 0.00 43.57 3.85
175 176 1.968050 ATTTCCGGTAGGCGGGAGTG 61.968 60.000 0.00 0.00 43.57 3.51
176 177 3.892104 TTCCGGTAGGCGGGAGTGT 62.892 63.158 0.00 0.00 43.57 3.55
178 179 3.379445 CGGTAGGCGGGAGTGTGT 61.379 66.667 0.00 0.00 0.00 3.72
179 180 2.264794 GGTAGGCGGGAGTGTGTG 59.735 66.667 0.00 0.00 0.00 3.82
181 182 2.203728 TAGGCGGGAGTGTGTGGT 60.204 61.111 0.00 0.00 0.00 4.16
183 184 1.252904 TAGGCGGGAGTGTGTGGTAC 61.253 60.000 0.00 0.00 0.00 3.34
184 185 2.738480 GCGGGAGTGTGTGGTACA 59.262 61.111 0.00 0.00 36.82 2.90
185 186 1.295423 GCGGGAGTGTGTGGTACAT 59.705 57.895 0.00 0.00 44.52 2.29
186 187 1.019278 GCGGGAGTGTGTGGTACATG 61.019 60.000 0.00 0.00 44.52 3.21
187 188 0.391130 CGGGAGTGTGTGGTACATGG 60.391 60.000 0.00 0.00 44.52 3.66
189 190 0.676782 GGAGTGTGTGGTACATGGCC 60.677 60.000 0.00 0.00 44.52 5.36
192 1985 0.881118 GTGTGTGGTACATGGCCTTG 59.119 55.000 16.76 16.76 44.52 3.61
198 1991 2.949644 GTGGTACATGGCCTTGGATAAC 59.050 50.000 21.67 12.19 44.52 1.89
204 1997 5.343307 ACATGGCCTTGGATAACAATTTC 57.657 39.130 21.67 0.00 38.65 2.17
207 2000 6.610830 ACATGGCCTTGGATAACAATTTCATA 59.389 34.615 21.67 0.00 38.65 2.15
209 2002 7.111247 TGGCCTTGGATAACAATTTCATAAG 57.889 36.000 3.32 0.00 38.65 1.73
212 2005 7.706607 GGCCTTGGATAACAATTTCATAAGTTC 59.293 37.037 0.00 0.00 38.65 3.01
217 3356 9.295825 TGGATAACAATTTCATAAGTTCACTGT 57.704 29.630 0.00 0.00 0.00 3.55
218 3357 9.559958 GGATAACAATTTCATAAGTTCACTGTG 57.440 33.333 0.17 0.17 0.00 3.66
221 3360 5.008613 ACAATTTCATAAGTTCACTGTGCGT 59.991 36.000 2.12 0.00 0.00 5.24
225 3364 4.816392 TCATAAGTTCACTGTGCGTACAT 58.184 39.130 6.84 0.00 35.97 2.29
227 3366 6.391537 TCATAAGTTCACTGTGCGTACATAA 58.608 36.000 6.84 0.00 35.97 1.90
231 3370 3.926821 TCACTGTGCGTACATAAGTGA 57.073 42.857 18.62 18.62 44.02 3.41
232 3371 4.245845 TCACTGTGCGTACATAAGTGAA 57.754 40.909 19.72 8.03 43.63 3.18
234 3373 2.984471 ACTGTGCGTACATAAGTGAACG 59.016 45.455 6.84 0.00 35.97 3.95
235 3374 3.239254 CTGTGCGTACATAAGTGAACGA 58.761 45.455 6.84 0.00 37.53 3.85
241 3380 4.673580 GCGTACATAAGTGAACGAAGAGGA 60.674 45.833 0.00 0.00 37.53 3.71
242 3381 5.029014 CGTACATAAGTGAACGAAGAGGAG 58.971 45.833 0.00 0.00 37.53 3.69
243 3382 4.457834 ACATAAGTGAACGAAGAGGAGG 57.542 45.455 0.00 0.00 0.00 4.30
244 3383 3.833070 ACATAAGTGAACGAAGAGGAGGT 59.167 43.478 0.00 0.00 0.00 3.85
246 3385 1.996798 AGTGAACGAAGAGGAGGTGA 58.003 50.000 0.00 0.00 0.00 4.02
248 3387 3.698289 AGTGAACGAAGAGGAGGTGATA 58.302 45.455 0.00 0.00 0.00 2.15
249 3388 4.282496 AGTGAACGAAGAGGAGGTGATAT 58.718 43.478 0.00 0.00 0.00 1.63
250 3389 5.446860 AGTGAACGAAGAGGAGGTGATATA 58.553 41.667 0.00 0.00 0.00 0.86
251 3390 6.071984 AGTGAACGAAGAGGAGGTGATATAT 58.928 40.000 0.00 0.00 0.00 0.86
252 3391 7.232188 AGTGAACGAAGAGGAGGTGATATATA 58.768 38.462 0.00 0.00 0.00 0.86
253 3392 7.891183 AGTGAACGAAGAGGAGGTGATATATAT 59.109 37.037 0.00 0.00 0.00 0.86
255 3394 7.670140 TGAACGAAGAGGAGGTGATATATATGT 59.330 37.037 0.00 0.00 0.00 2.29
256 3395 7.397892 ACGAAGAGGAGGTGATATATATGTG 57.602 40.000 0.00 0.00 0.00 3.21
257 3396 6.948886 ACGAAGAGGAGGTGATATATATGTGT 59.051 38.462 0.00 0.00 0.00 3.72
259 3398 7.094162 CGAAGAGGAGGTGATATATATGTGTGT 60.094 40.741 0.00 0.00 0.00 3.72
260 3399 7.473735 AGAGGAGGTGATATATATGTGTGTG 57.526 40.000 0.00 0.00 0.00 3.82
261 3400 6.438741 AGAGGAGGTGATATATATGTGTGTGG 59.561 42.308 0.00 0.00 0.00 4.17
262 3401 6.084738 AGGAGGTGATATATATGTGTGTGGT 58.915 40.000 0.00 0.00 0.00 4.16
263 3402 6.558775 AGGAGGTGATATATATGTGTGTGGTT 59.441 38.462 0.00 0.00 0.00 3.67
265 3404 5.997746 AGGTGATATATATGTGTGTGGTTGC 59.002 40.000 0.00 0.00 0.00 4.17
266 3405 5.997746 GGTGATATATATGTGTGTGGTTGCT 59.002 40.000 0.00 0.00 0.00 3.91
267 3406 6.147821 GGTGATATATATGTGTGTGGTTGCTC 59.852 42.308 0.00 0.00 0.00 4.26
268 3407 6.147821 GTGATATATATGTGTGTGGTTGCTCC 59.852 42.308 0.00 0.00 0.00 4.70
269 3408 2.877097 ATATGTGTGTGGTTGCTCCA 57.123 45.000 0.00 0.00 45.01 3.86
279 3418 3.359695 TGGTTGCTCCAAATACTACCC 57.640 47.619 0.00 0.00 44.12 3.69
281 3420 3.014623 GGTTGCTCCAAATACTACCCAC 58.985 50.000 0.00 0.00 35.97 4.61
282 3421 3.014623 GTTGCTCCAAATACTACCCACC 58.985 50.000 0.00 0.00 0.00 4.61
283 3422 2.270858 TGCTCCAAATACTACCCACCA 58.729 47.619 0.00 0.00 0.00 4.17
284 3423 2.026636 TGCTCCAAATACTACCCACCAC 60.027 50.000 0.00 0.00 0.00 4.16
286 3425 2.235402 CTCCAAATACTACCCACCACGT 59.765 50.000 0.00 0.00 0.00 4.49
287 3426 3.439154 TCCAAATACTACCCACCACGTA 58.561 45.455 0.00 0.00 0.00 3.57
288 3427 3.195396 TCCAAATACTACCCACCACGTAC 59.805 47.826 0.00 0.00 0.00 3.67
290 3429 2.418368 ATACTACCCACCACGTACGA 57.582 50.000 24.41 0.00 0.00 3.43
301 3440 4.119936 CGTACGAACGTTCAGCGA 57.880 55.556 26.71 6.71 44.21 4.93
304 3443 0.023354 GTACGAACGTTCAGCGATGC 59.977 55.000 26.71 7.34 44.77 3.91
305 3444 0.109458 TACGAACGTTCAGCGATGCT 60.109 50.000 26.71 6.53 44.77 3.79
306 3445 1.341802 CGAACGTTCAGCGATGCTC 59.658 57.895 26.71 0.00 44.77 4.26
307 3446 1.344226 CGAACGTTCAGCGATGCTCA 61.344 55.000 26.71 0.00 44.77 4.26
308 3447 0.093705 GAACGTTCAGCGATGCTCAC 59.906 55.000 23.12 0.00 44.77 3.51
309 3448 0.319900 AACGTTCAGCGATGCTCACT 60.320 50.000 0.00 0.00 44.77 3.41
310 3449 1.010935 ACGTTCAGCGATGCTCACTG 61.011 55.000 0.00 0.00 44.77 3.66
311 3450 1.010935 CGTTCAGCGATGCTCACTGT 61.011 55.000 0.00 0.00 44.77 3.55
313 3452 1.293963 TTCAGCGATGCTCACTGTGC 61.294 55.000 2.12 0.00 36.40 4.57
314 3453 2.812609 AGCGATGCTCACTGTGCG 60.813 61.111 2.12 0.00 30.62 5.34
315 3454 3.114616 GCGATGCTCACTGTGCGT 61.115 61.111 2.12 0.00 0.00 5.24
316 3455 2.774126 CGATGCTCACTGTGCGTG 59.226 61.111 2.12 0.00 45.18 5.34
317 3456 2.477845 GATGCTCACTGTGCGTGC 59.522 61.111 2.12 7.96 43.46 5.34
318 3457 3.358667 GATGCTCACTGTGCGTGCG 62.359 63.158 2.12 0.00 43.46 5.34
320 3459 4.360027 GCTCACTGTGCGTGCGTG 62.360 66.667 2.12 0.00 43.46 5.34
322 3461 4.522689 TCACTGTGCGTGCGTGGT 62.523 61.111 2.12 0.00 43.46 4.16
323 3462 2.660224 CACTGTGCGTGCGTGGTA 60.660 61.111 0.00 0.00 36.72 3.25
327 3921 3.031457 GTGCGTGCGTGGTACGAA 61.031 61.111 10.33 0.00 46.05 3.85
333 3927 3.167945 GCGTGGTACGAACGTCCG 61.168 66.667 17.64 0.00 46.05 4.79
345 3939 4.143333 CGTCCGGGCAGGTGGTAG 62.143 72.222 6.96 0.00 41.99 3.18
347 3941 2.682494 TCCGGGCAGGTGGTAGAC 60.682 66.667 0.00 0.00 41.99 2.59
351 3948 2.682494 GGCAGGTGGTAGACGGGA 60.682 66.667 0.00 0.00 0.00 5.14
421 4018 2.236395 ACATAAGTGAACGAAGGGGAGG 59.764 50.000 0.00 0.00 0.00 4.30
427 4024 1.829222 TGAACGAAGGGGAGGTGATAC 59.171 52.381 0.00 0.00 0.00 2.24
428 4025 1.829222 GAACGAAGGGGAGGTGATACA 59.171 52.381 0.00 0.00 0.00 2.29
429 4026 2.176247 ACGAAGGGGAGGTGATACAT 57.824 50.000 0.00 0.00 0.00 2.29
430 4027 3.323774 ACGAAGGGGAGGTGATACATA 57.676 47.619 0.00 0.00 0.00 2.29
431 4028 3.858135 ACGAAGGGGAGGTGATACATAT 58.142 45.455 0.00 0.00 0.00 1.78
432 4029 3.578716 ACGAAGGGGAGGTGATACATATG 59.421 47.826 0.00 0.00 0.00 1.78
436 4034 5.087923 AGGGGAGGTGATACATATGTGTA 57.912 43.478 18.81 4.66 44.43 2.90
460 4058 2.173782 TGCTTCAAAGACTACCCACCAA 59.826 45.455 0.00 0.00 0.00 3.67
461 4059 3.181434 TGCTTCAAAGACTACCCACCAAT 60.181 43.478 0.00 0.00 0.00 3.16
462 4060 3.440522 GCTTCAAAGACTACCCACCAATC 59.559 47.826 0.00 0.00 0.00 2.67
463 4061 3.713826 TCAAAGACTACCCACCAATCC 57.286 47.619 0.00 0.00 0.00 3.01
468 4066 1.564348 GACTACCCACCAATCCACCAT 59.436 52.381 0.00 0.00 0.00 3.55
549 4148 8.601047 AAGAAGATATCCGATCCAGAATATGA 57.399 34.615 0.00 0.00 0.00 2.15
602 4201 1.160137 CTAACTTGACCCACAGCTGC 58.840 55.000 15.27 0.00 0.00 5.25
607 4206 1.537202 CTTGACCCACAGCTGCTTAAC 59.463 52.381 15.27 3.72 0.00 2.01
619 4218 2.263077 CTGCTTAACGAGATTGACGCT 58.737 47.619 0.00 0.00 0.00 5.07
648 4247 3.508840 CAATGGAAGACGCCGGGC 61.509 66.667 9.54 9.54 0.00 6.13
743 4371 1.872388 CAGATGATGCAGAGCTCAGG 58.128 55.000 17.77 8.84 0.00 3.86
757 4385 1.001764 TCAGGTTGCTGGGATGCAG 60.002 57.895 0.00 0.00 44.27 4.41
776 4404 1.551883 AGTAATGTGTACCGTCCACCC 59.448 52.381 0.00 0.00 31.71 4.61
777 4405 0.903942 TAATGTGTACCGTCCACCCC 59.096 55.000 0.00 0.00 31.71 4.95
845 4474 2.594303 CCCCAGCGTCAACTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
856 4485 0.027979 CAACTTGCACACCTCACACG 59.972 55.000 0.00 0.00 0.00 4.49
857 4486 1.714899 AACTTGCACACCTCACACGC 61.715 55.000 0.00 0.00 0.00 5.34
865 4494 2.740055 CCTCACACGCTCACTGCC 60.740 66.667 0.00 0.00 38.78 4.85
923 4552 3.910627 TGGCCTCTCCCTCCTATAAATTC 59.089 47.826 3.32 0.00 0.00 2.17
929 4558 4.654262 TCTCCCTCCTATAAATTCGCTTGT 59.346 41.667 0.00 0.00 0.00 3.16
940 4569 0.239082 TTCGCTTGTTCTGCATGCTG 59.761 50.000 20.33 18.97 43.56 4.41
941 4570 1.154093 CGCTTGTTCTGCATGCTGG 60.154 57.895 22.54 13.72 43.56 4.85
951 4580 3.242011 TCTGCATGCTGGTCTATATCCA 58.758 45.455 22.54 0.00 0.00 3.41
953 4587 2.705127 TGCATGCTGGTCTATATCCACA 59.295 45.455 20.33 0.00 0.00 4.17
1101 4735 1.003759 CTAACGCGCTACTGATCTCGT 60.004 52.381 5.73 0.00 0.00 4.18
1110 4744 5.433855 CGCTACTGATCTCGTAGTACTTTC 58.566 45.833 17.94 0.00 37.31 2.62
1130 4764 8.997621 ACTTTCGAACTAGCATGAATTAACTA 57.002 30.769 0.00 0.00 0.00 2.24
1191 4825 6.681120 GCTGCTCCTAATTTCAATGCACAATA 60.681 38.462 0.00 0.00 0.00 1.90
1237 4871 0.545548 AGGAGGAGAAGAAAGCCGGT 60.546 55.000 1.90 0.00 0.00 5.28
1341 5008 0.686441 TATCCAGGACACGGTGGAGG 60.686 60.000 13.48 8.37 46.09 4.30
1342 5009 2.455960 ATCCAGGACACGGTGGAGGA 62.456 60.000 13.48 13.18 46.09 3.71
1343 5010 2.650116 CCAGGACACGGTGGAGGAG 61.650 68.421 13.48 0.00 35.67 3.69
1344 5011 2.283966 AGGACACGGTGGAGGAGG 60.284 66.667 13.48 0.00 0.00 4.30
1345 5012 2.283676 GGACACGGTGGAGGAGGA 60.284 66.667 13.48 0.00 0.00 3.71
1346 5013 2.352032 GGACACGGTGGAGGAGGAG 61.352 68.421 13.48 0.00 0.00 3.69
1347 5014 2.283966 ACACGGTGGAGGAGGAGG 60.284 66.667 13.48 0.00 0.00 4.30
1348 5015 3.775654 CACGGTGGAGGAGGAGGC 61.776 72.222 0.00 0.00 0.00 4.70
1358 5025 4.365505 GAGGAGGCGGCGGCTATC 62.366 72.222 36.29 29.77 38.98 2.08
1361 5028 4.671569 GAGGCGGCGGCTATCCAG 62.672 72.222 36.29 0.00 38.98 3.86
1364 5031 4.971125 GCGGCGGCTATCCAGGAC 62.971 72.222 9.78 0.00 35.83 3.85
1365 5032 3.536917 CGGCGGCTATCCAGGACA 61.537 66.667 7.61 0.00 0.00 4.02
1366 5033 2.109181 GGCGGCTATCCAGGACAC 59.891 66.667 0.00 0.00 0.00 3.67
1367 5034 2.279517 GCGGCTATCCAGGACACG 60.280 66.667 0.00 0.00 0.00 4.49
1368 5035 2.417516 CGGCTATCCAGGACACGG 59.582 66.667 0.00 0.00 0.00 4.94
1369 5036 2.423898 CGGCTATCCAGGACACGGT 61.424 63.158 0.00 0.00 0.00 4.83
1370 5037 1.144057 GGCTATCCAGGACACGGTG 59.856 63.158 6.58 6.58 0.00 4.94
1371 5038 1.144057 GCTATCCAGGACACGGTGG 59.856 63.158 13.48 0.00 34.87 4.61
1372 5039 1.327690 GCTATCCAGGACACGGTGGA 61.328 60.000 13.48 0.00 46.93 4.02
1373 5040 0.747255 CTATCCAGGACACGGTGGAG 59.253 60.000 13.48 0.00 46.09 3.86
1805 5472 4.394712 GCCACGGTGGAGGAGGTG 62.395 72.222 30.65 1.78 40.96 4.00
1806 5473 3.706373 CCACGGTGGAGGAGGTGG 61.706 72.222 22.77 0.00 40.96 4.61
1807 5474 4.394712 CACGGTGGAGGAGGTGGC 62.395 72.222 0.00 0.00 0.00 5.01
1840 5914 4.003788 CACGGTGAAGGAGGCGGT 62.004 66.667 0.74 0.00 0.00 5.68
2174 6299 8.506140 TGATAAATAAACTGCGTACGTATACC 57.494 34.615 17.90 0.00 0.00 2.73
2175 6300 5.871531 AAATAAACTGCGTACGTATACCG 57.128 39.130 17.90 2.84 44.03 4.02
2176 6301 2.193306 AAACTGCGTACGTATACCGG 57.807 50.000 17.90 0.00 42.24 5.28
2177 6302 1.094785 AACTGCGTACGTATACCGGT 58.905 50.000 17.90 13.98 42.24 5.28
2178 6303 1.948104 ACTGCGTACGTATACCGGTA 58.052 50.000 18.46 18.46 42.24 4.02
2179 6304 2.494059 ACTGCGTACGTATACCGGTAT 58.506 47.619 29.17 29.17 42.24 2.73
2180 6305 3.659786 ACTGCGTACGTATACCGGTATA 58.340 45.455 27.01 27.01 42.24 1.47
2181 6306 3.432252 ACTGCGTACGTATACCGGTATAC 59.568 47.826 38.41 38.41 42.61 1.47
2278 6417 3.005897 CCCCACTCTATATGTGTTCTCCG 59.994 52.174 5.62 0.00 33.92 4.63
2326 6465 9.734620 CATGTTTACTGTTATGGGAATATGTTG 57.265 33.333 0.00 0.00 0.00 3.33
2333 6472 5.420421 TGTTATGGGAATATGTTGTTGTGGG 59.580 40.000 0.00 0.00 0.00 4.61
2354 6493 8.281531 TGTGGGATAAAATCACAGAGGAATATT 58.718 33.333 0.00 0.00 44.71 1.28
2370 6509 6.485171 AGGAATATTGCCAAAGTTCTACACT 58.515 36.000 2.98 0.00 37.30 3.55
2390 6529 3.503748 ACTGTGCACTTAATTCCTTCTGC 59.496 43.478 19.41 0.00 0.00 4.26
2472 10080 7.438459 ACGACTTGTTATAGAGATATTGTTGGC 59.562 37.037 0.00 0.00 0.00 4.52
2476 10084 2.543777 TAGAGATATTGTTGGCCGGC 57.456 50.000 21.18 21.18 0.00 6.13
2512 10120 1.471327 CCTACCCATGCATTTTTGCGG 60.471 52.381 0.00 0.00 37.69 5.69
2513 10121 1.204467 CTACCCATGCATTTTTGCGGT 59.796 47.619 0.00 0.05 37.69 5.68
2516 10124 1.067283 CCCATGCATTTTTGCGGTACA 60.067 47.619 0.00 0.00 37.69 2.90
2522 10130 2.031157 GCATTTTTGCGGTACAGTCACT 60.031 45.455 0.00 0.00 0.00 3.41
2590 10271 3.355378 TGGCAATGGAGTATCACCAAAG 58.645 45.455 0.00 0.00 40.93 2.77
2616 10297 2.823747 AGCTTGTATGTCACCGTCACTA 59.176 45.455 0.00 0.00 0.00 2.74
2622 10303 2.209690 TGTCACCGTCACTATCCTCA 57.790 50.000 0.00 0.00 0.00 3.86
2718 10431 6.155475 AGGAAAACGGAAATGAATGAAACA 57.845 33.333 0.00 0.00 0.00 2.83
2726 10439 6.697019 ACGGAAATGAATGAAACAGAGTTTTG 59.303 34.615 0.00 0.00 0.00 2.44
2855 11219 6.316890 ACGAAAGTAAAAGGTTGCTTGAACTA 59.683 34.615 0.00 0.00 46.88 2.24
2856 11220 7.148205 ACGAAAGTAAAAGGTTGCTTGAACTAA 60.148 33.333 0.00 0.00 46.88 2.24
2895 11260 6.238925 GCATACAGAAAAACACAACCTTACCT 60.239 38.462 0.00 0.00 0.00 3.08
2896 11261 5.576447 ACAGAAAAACACAACCTTACCTG 57.424 39.130 0.00 0.00 0.00 4.00
2897 11262 4.401202 ACAGAAAAACACAACCTTACCTGG 59.599 41.667 0.00 0.00 0.00 4.45
2898 11263 4.401202 CAGAAAAACACAACCTTACCTGGT 59.599 41.667 4.05 4.05 43.11 4.00
2899 11264 4.401202 AGAAAAACACAACCTTACCTGGTG 59.599 41.667 10.23 0.00 40.73 4.17
2900 11265 3.375647 AAACACAACCTTACCTGGTGT 57.624 42.857 10.23 0.00 43.93 4.16
2901 11266 4.506937 AAACACAACCTTACCTGGTGTA 57.493 40.909 10.23 0.00 41.45 2.90
2902 11267 3.764237 ACACAACCTTACCTGGTGTAG 57.236 47.619 10.23 6.70 40.60 2.74
2903 11268 3.043418 ACACAACCTTACCTGGTGTAGT 58.957 45.455 10.23 0.34 40.60 2.73
2904 11269 3.457012 ACACAACCTTACCTGGTGTAGTT 59.543 43.478 10.23 6.97 40.60 2.24
2905 11270 4.080186 ACACAACCTTACCTGGTGTAGTTT 60.080 41.667 10.23 0.00 40.60 2.66
2906 11271 5.130809 ACACAACCTTACCTGGTGTAGTTTA 59.869 40.000 10.23 0.00 40.60 2.01
2907 11272 6.056884 CACAACCTTACCTGGTGTAGTTTAA 58.943 40.000 10.23 0.00 40.73 1.52
2908 11273 6.713450 CACAACCTTACCTGGTGTAGTTTAAT 59.287 38.462 10.23 0.00 40.73 1.40
2909 11274 7.229907 CACAACCTTACCTGGTGTAGTTTAATT 59.770 37.037 10.23 0.00 40.73 1.40
2910 11275 7.229907 ACAACCTTACCTGGTGTAGTTTAATTG 59.770 37.037 10.23 7.99 40.73 2.32
2911 11276 7.081857 ACCTTACCTGGTGTAGTTTAATTGA 57.918 36.000 10.23 0.00 39.17 2.57
2912 11277 7.166167 ACCTTACCTGGTGTAGTTTAATTGAG 58.834 38.462 10.23 0.00 39.17 3.02
2913 11278 6.093633 CCTTACCTGGTGTAGTTTAATTGAGC 59.906 42.308 10.23 0.00 0.00 4.26
2914 11279 4.980573 ACCTGGTGTAGTTTAATTGAGCA 58.019 39.130 0.00 0.00 0.00 4.26
2915 11280 5.570320 ACCTGGTGTAGTTTAATTGAGCAT 58.430 37.500 0.00 0.00 0.00 3.79
2916 11281 6.717289 ACCTGGTGTAGTTTAATTGAGCATA 58.283 36.000 0.00 0.00 0.00 3.14
2917 11282 7.346471 ACCTGGTGTAGTTTAATTGAGCATAT 58.654 34.615 0.00 0.00 0.00 1.78
2918 11283 7.834181 ACCTGGTGTAGTTTAATTGAGCATATT 59.166 33.333 0.00 0.00 0.00 1.28
2919 11284 9.337396 CCTGGTGTAGTTTAATTGAGCATATTA 57.663 33.333 0.00 0.00 0.00 0.98
2928 11293 9.016623 GTTTAATTGAGCATATTAAACGGTTCC 57.983 33.333 17.54 3.66 43.14 3.62
2929 11294 5.767816 ATTGAGCATATTAAACGGTTCCC 57.232 39.130 0.00 0.00 0.00 3.97
2930 11295 3.547746 TGAGCATATTAAACGGTTCCCC 58.452 45.455 0.00 0.00 0.00 4.81
2931 11296 3.201266 TGAGCATATTAAACGGTTCCCCT 59.799 43.478 0.00 0.00 0.00 4.79
2932 11297 4.204799 GAGCATATTAAACGGTTCCCCTT 58.795 43.478 0.00 0.00 0.00 3.95
2933 11298 3.951680 AGCATATTAAACGGTTCCCCTTG 59.048 43.478 0.00 0.00 0.00 3.61
2934 11299 3.697542 GCATATTAAACGGTTCCCCTTGT 59.302 43.478 0.00 0.00 0.00 3.16
2935 11300 4.201980 GCATATTAAACGGTTCCCCTTGTC 60.202 45.833 0.00 0.00 0.00 3.18
2936 11301 3.801307 ATTAAACGGTTCCCCTTGTCT 57.199 42.857 0.00 0.00 0.00 3.41
2937 11302 4.914177 ATTAAACGGTTCCCCTTGTCTA 57.086 40.909 0.00 0.00 0.00 2.59
2938 11303 4.703379 TTAAACGGTTCCCCTTGTCTAA 57.297 40.909 0.00 0.00 0.00 2.10
2939 11304 2.556144 AACGGTTCCCCTTGTCTAAC 57.444 50.000 0.00 0.00 0.00 2.34
2940 11305 1.725803 ACGGTTCCCCTTGTCTAACT 58.274 50.000 0.00 0.00 0.00 2.24
2941 11306 1.622312 ACGGTTCCCCTTGTCTAACTC 59.378 52.381 0.00 0.00 0.00 3.01
2942 11307 1.066358 CGGTTCCCCTTGTCTAACTCC 60.066 57.143 0.00 0.00 0.00 3.85
2943 11308 2.267192 GGTTCCCCTTGTCTAACTCCT 58.733 52.381 0.00 0.00 0.00 3.69
2944 11309 2.236644 GGTTCCCCTTGTCTAACTCCTC 59.763 54.545 0.00 0.00 0.00 3.71
2945 11310 3.174779 GTTCCCCTTGTCTAACTCCTCT 58.825 50.000 0.00 0.00 0.00 3.69
2946 11311 2.821437 TCCCCTTGTCTAACTCCTCTG 58.179 52.381 0.00 0.00 0.00 3.35
2947 11312 1.834263 CCCCTTGTCTAACTCCTCTGG 59.166 57.143 0.00 0.00 0.00 3.86
2948 11313 1.208293 CCCTTGTCTAACTCCTCTGGC 59.792 57.143 0.00 0.00 0.00 4.85
2949 11314 1.902508 CCTTGTCTAACTCCTCTGGCA 59.097 52.381 0.00 0.00 0.00 4.92
2950 11315 2.503356 CCTTGTCTAACTCCTCTGGCAT 59.497 50.000 0.00 0.00 0.00 4.40
2951 11316 3.431486 CCTTGTCTAACTCCTCTGGCATC 60.431 52.174 0.00 0.00 0.00 3.91
2952 11317 2.111384 TGTCTAACTCCTCTGGCATCC 58.889 52.381 0.00 0.00 0.00 3.51
2953 11318 1.414550 GTCTAACTCCTCTGGCATCCC 59.585 57.143 0.00 0.00 0.00 3.85
2954 11319 1.292242 TCTAACTCCTCTGGCATCCCT 59.708 52.381 0.00 0.00 0.00 4.20
2955 11320 1.415659 CTAACTCCTCTGGCATCCCTG 59.584 57.143 0.00 0.00 0.00 4.45
2956 11321 0.548682 AACTCCTCTGGCATCCCTGT 60.549 55.000 0.00 0.00 0.00 4.00
2957 11322 0.548682 ACTCCTCTGGCATCCCTGTT 60.549 55.000 0.00 0.00 0.00 3.16
2958 11323 0.622665 CTCCTCTGGCATCCCTGTTT 59.377 55.000 0.00 0.00 0.00 2.83
2959 11324 0.329261 TCCTCTGGCATCCCTGTTTG 59.671 55.000 0.00 0.00 0.00 2.93
2960 11325 0.682209 CCTCTGGCATCCCTGTTTGG 60.682 60.000 0.00 0.00 0.00 3.28
2971 11336 2.058593 CCTGTTTGGGCCCTAGAATC 57.941 55.000 25.70 8.87 0.00 2.52
2972 11337 1.566231 CCTGTTTGGGCCCTAGAATCT 59.434 52.381 25.70 0.00 0.00 2.40
2973 11338 2.777692 CCTGTTTGGGCCCTAGAATCTA 59.222 50.000 25.70 0.00 0.00 1.98
2974 11339 3.202151 CCTGTTTGGGCCCTAGAATCTAA 59.798 47.826 25.70 2.45 0.00 2.10
2975 11340 4.325030 CCTGTTTGGGCCCTAGAATCTAAA 60.325 45.833 25.70 9.61 0.00 1.85
2976 11341 4.855340 TGTTTGGGCCCTAGAATCTAAAG 58.145 43.478 25.70 0.00 0.00 1.85
2977 11342 4.207955 GTTTGGGCCCTAGAATCTAAAGG 58.792 47.826 25.70 2.51 0.00 3.11
2987 11352 7.812306 CCCTAGAATCTAAAGGGGTTTATTCA 58.188 38.462 9.78 0.00 45.43 2.57
2988 11353 7.939588 CCCTAGAATCTAAAGGGGTTTATTCAG 59.060 40.741 9.78 0.00 45.43 3.02
2989 11354 8.495260 CCTAGAATCTAAAGGGGTTTATTCAGT 58.505 37.037 0.00 0.00 0.00 3.41
2990 11355 9.907229 CTAGAATCTAAAGGGGTTTATTCAGTT 57.093 33.333 0.00 0.00 0.00 3.16
3021 11386 9.859427 TTCTTTAACATGCTATCAATTTTGGAG 57.141 29.630 0.00 0.00 0.00 3.86
3022 11387 8.469200 TCTTTAACATGCTATCAATTTTGGAGG 58.531 33.333 0.00 0.00 0.00 4.30
3023 11388 7.953005 TTAACATGCTATCAATTTTGGAGGA 57.047 32.000 0.00 0.00 0.00 3.71
3024 11389 6.461110 AACATGCTATCAATTTTGGAGGAG 57.539 37.500 0.00 0.00 0.00 3.69
3025 11390 5.513233 ACATGCTATCAATTTTGGAGGAGT 58.487 37.500 0.00 0.00 0.00 3.85
3026 11391 5.359009 ACATGCTATCAATTTTGGAGGAGTG 59.641 40.000 0.00 0.00 0.00 3.51
3027 11392 5.178096 TGCTATCAATTTTGGAGGAGTGA 57.822 39.130 0.00 0.00 0.00 3.41
3028 11393 5.188434 TGCTATCAATTTTGGAGGAGTGAG 58.812 41.667 0.00 0.00 0.00 3.51
3029 11394 4.578105 GCTATCAATTTTGGAGGAGTGAGG 59.422 45.833 0.00 0.00 0.00 3.86
3030 11395 4.664688 ATCAATTTTGGAGGAGTGAGGT 57.335 40.909 0.00 0.00 0.00 3.85
3031 11396 4.021102 TCAATTTTGGAGGAGTGAGGTC 57.979 45.455 0.00 0.00 0.00 3.85
3032 11397 3.394274 TCAATTTTGGAGGAGTGAGGTCA 59.606 43.478 0.00 0.00 0.00 4.02
3033 11398 3.710209 ATTTTGGAGGAGTGAGGTCAG 57.290 47.619 0.00 0.00 0.00 3.51
3034 11399 0.687354 TTTGGAGGAGTGAGGTCAGC 59.313 55.000 0.00 0.00 0.00 4.26
3035 11400 1.536073 TTGGAGGAGTGAGGTCAGCG 61.536 60.000 0.00 0.00 0.00 5.18
3036 11401 1.679305 GGAGGAGTGAGGTCAGCGA 60.679 63.158 0.00 0.00 0.00 4.93
3037 11402 1.040339 GGAGGAGTGAGGTCAGCGAT 61.040 60.000 0.00 0.00 0.00 4.58
3038 11403 0.820871 GAGGAGTGAGGTCAGCGATT 59.179 55.000 0.00 0.00 0.00 3.34
3039 11404 0.534412 AGGAGTGAGGTCAGCGATTG 59.466 55.000 0.00 0.00 0.00 2.67
3040 11405 0.460987 GGAGTGAGGTCAGCGATTGG 60.461 60.000 0.00 0.00 0.00 3.16
3041 11406 0.460987 GAGTGAGGTCAGCGATTGGG 60.461 60.000 0.00 0.00 0.00 4.12
3042 11407 1.450312 GTGAGGTCAGCGATTGGGG 60.450 63.158 0.00 0.00 0.00 4.96
3043 11408 1.612146 TGAGGTCAGCGATTGGGGA 60.612 57.895 0.00 0.00 0.00 4.81
3044 11409 0.982852 TGAGGTCAGCGATTGGGGAT 60.983 55.000 0.00 0.00 0.00 3.85
3045 11410 1.048601 GAGGTCAGCGATTGGGGATA 58.951 55.000 0.00 0.00 0.00 2.59
3046 11411 1.001406 GAGGTCAGCGATTGGGGATAG 59.999 57.143 0.00 0.00 0.00 2.08
3047 11412 0.603975 GGTCAGCGATTGGGGATAGC 60.604 60.000 0.00 0.00 36.71 2.97
3048 11413 0.603975 GTCAGCGATTGGGGATAGCC 60.604 60.000 0.00 0.00 37.10 3.93
3049 11414 0.764369 TCAGCGATTGGGGATAGCCT 60.764 55.000 0.00 0.00 37.10 4.58
3050 11415 0.109342 CAGCGATTGGGGATAGCCTT 59.891 55.000 0.00 0.00 37.10 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.567848 CGGCTTGTTATATGAAACTTGTAATTT 57.432 29.630 0.00 0.00 0.00 1.82
4 5 8.736244 ACGGCTTGTTATATGAAACTTGTAATT 58.264 29.630 0.00 0.00 0.00 1.40
5 6 8.276252 ACGGCTTGTTATATGAAACTTGTAAT 57.724 30.769 0.00 0.00 0.00 1.89
6 7 7.675962 ACGGCTTGTTATATGAAACTTGTAA 57.324 32.000 0.00 0.00 0.00 2.41
8 9 7.389607 ACTTACGGCTTGTTATATGAAACTTGT 59.610 33.333 0.00 0.00 0.00 3.16
9 10 7.748847 ACTTACGGCTTGTTATATGAAACTTG 58.251 34.615 0.00 0.00 0.00 3.16
11 12 7.916914 AACTTACGGCTTGTTATATGAAACT 57.083 32.000 0.00 0.00 0.00 2.66
12 13 8.231837 TCAAACTTACGGCTTGTTATATGAAAC 58.768 33.333 0.00 0.00 0.00 2.78
13 14 8.325421 TCAAACTTACGGCTTGTTATATGAAA 57.675 30.769 0.00 0.00 0.00 2.69
15 16 7.412129 CGTTCAAACTTACGGCTTGTTATATGA 60.412 37.037 0.00 0.00 34.30 2.15
16 17 6.681178 CGTTCAAACTTACGGCTTGTTATATG 59.319 38.462 0.00 0.00 34.30 1.78
17 18 6.591062 TCGTTCAAACTTACGGCTTGTTATAT 59.409 34.615 0.00 0.00 38.26 0.86
18 19 5.925397 TCGTTCAAACTTACGGCTTGTTATA 59.075 36.000 0.00 0.00 38.26 0.98
19 20 4.751098 TCGTTCAAACTTACGGCTTGTTAT 59.249 37.500 0.00 0.00 38.26 1.89
20 21 4.118410 TCGTTCAAACTTACGGCTTGTTA 58.882 39.130 0.00 0.00 38.26 2.41
21 22 2.937799 TCGTTCAAACTTACGGCTTGTT 59.062 40.909 0.00 0.00 38.26 2.83
23 24 3.806316 ATCGTTCAAACTTACGGCTTG 57.194 42.857 0.00 0.00 38.26 4.01
24 25 5.927954 TTAATCGTTCAAACTTACGGCTT 57.072 34.783 0.00 0.00 38.26 4.35
25 26 5.927954 TTTAATCGTTCAAACTTACGGCT 57.072 34.783 0.00 0.00 38.26 5.52
27 28 9.649024 TTAAGTTTTAATCGTTCAAACTTACGG 57.351 29.630 18.72 0.00 45.79 4.02
67 68 5.352569 GTGAAGTGGTTGAATCCTGTATGAG 59.647 44.000 0.00 0.00 0.00 2.90
69 70 4.093408 CGTGAAGTGGTTGAATCCTGTATG 59.907 45.833 0.00 0.00 0.00 2.39
70 71 4.020573 TCGTGAAGTGGTTGAATCCTGTAT 60.021 41.667 0.00 0.00 0.00 2.29
71 72 3.322541 TCGTGAAGTGGTTGAATCCTGTA 59.677 43.478 0.00 0.00 0.00 2.74
72 73 2.104111 TCGTGAAGTGGTTGAATCCTGT 59.896 45.455 0.00 0.00 0.00 4.00
73 74 2.766313 TCGTGAAGTGGTTGAATCCTG 58.234 47.619 0.00 0.00 0.00 3.86
74 75 3.485463 TTCGTGAAGTGGTTGAATCCT 57.515 42.857 0.00 0.00 0.00 3.24
75 76 3.181520 CGATTCGTGAAGTGGTTGAATCC 60.182 47.826 0.00 0.00 41.00 3.01
77 78 2.159627 GCGATTCGTGAAGTGGTTGAAT 59.840 45.455 8.03 0.00 32.30 2.57
79 80 1.144969 GCGATTCGTGAAGTGGTTGA 58.855 50.000 8.03 0.00 0.00 3.18
80 81 0.179250 CGCGATTCGTGAAGTGGTTG 60.179 55.000 14.20 0.00 39.94 3.77
82 83 1.736645 CCGCGATTCGTGAAGTGGT 60.737 57.895 20.49 0.00 39.94 4.16
83 84 2.452813 CCCGCGATTCGTGAAGTGG 61.453 63.158 20.49 9.40 39.94 4.00
84 85 1.445410 TCCCGCGATTCGTGAAGTG 60.445 57.895 20.49 4.11 39.94 3.16
88 89 0.804544 GATTGTCCCGCGATTCGTGA 60.805 55.000 20.49 6.14 39.94 4.35
89 90 1.636340 GATTGTCCCGCGATTCGTG 59.364 57.895 8.23 12.54 37.10 4.35
90 91 1.876714 CGATTGTCCCGCGATTCGT 60.877 57.895 8.23 0.00 36.19 3.85
91 92 1.540607 CTCGATTGTCCCGCGATTCG 61.541 60.000 8.23 5.54 33.20 3.34
92 93 1.822250 GCTCGATTGTCCCGCGATTC 61.822 60.000 8.23 0.00 33.20 2.52
93 94 1.883084 GCTCGATTGTCCCGCGATT 60.883 57.895 8.23 0.00 33.20 3.34
94 95 2.279517 GCTCGATTGTCCCGCGAT 60.280 61.111 8.23 0.00 33.20 4.58
99 100 4.467084 TGGCCGCTCGATTGTCCC 62.467 66.667 0.00 0.00 0.00 4.46
100 101 2.892425 CTGGCCGCTCGATTGTCC 60.892 66.667 0.00 0.00 0.00 4.02
104 105 4.408821 TTGCCTGGCCGCTCGATT 62.409 61.111 17.53 0.00 0.00 3.34
105 106 4.845580 CTTGCCTGGCCGCTCGAT 62.846 66.667 17.53 0.00 0.00 3.59
114 115 3.066814 GAGCCAAGCCTTGCCTGG 61.067 66.667 0.00 0.00 42.55 4.45
115 116 3.437795 CGAGCCAAGCCTTGCCTG 61.438 66.667 0.00 0.00 0.00 4.85
116 117 3.958860 ACGAGCCAAGCCTTGCCT 61.959 61.111 0.00 0.00 0.00 4.75
117 118 3.741476 CACGAGCCAAGCCTTGCC 61.741 66.667 0.00 0.00 0.00 4.52
118 119 3.741476 CCACGAGCCAAGCCTTGC 61.741 66.667 0.00 0.00 0.00 4.01
119 120 3.058160 CCCACGAGCCAAGCCTTG 61.058 66.667 0.00 0.00 0.00 3.61
121 122 4.335647 CACCCACGAGCCAAGCCT 62.336 66.667 0.00 0.00 0.00 4.58
135 136 4.322424 AATTTGAAAATTCGTAGGGGCACC 60.322 41.667 0.00 0.00 40.56 5.01
136 137 3.926821 TTTGAAAATTCGTAGGGGCAC 57.073 42.857 0.00 0.00 0.00 5.01
137 138 5.474825 GAAATTTGAAAATTCGTAGGGGCA 58.525 37.500 0.00 0.00 37.62 5.36
138 139 4.868171 GGAAATTTGAAAATTCGTAGGGGC 59.132 41.667 0.00 0.00 37.62 5.80
139 140 5.099575 CGGAAATTTGAAAATTCGTAGGGG 58.900 41.667 0.00 0.00 37.62 4.79
140 141 5.099575 CCGGAAATTTGAAAATTCGTAGGG 58.900 41.667 0.00 0.00 37.62 3.53
141 142 5.705902 ACCGGAAATTTGAAAATTCGTAGG 58.294 37.500 9.46 10.06 37.62 3.18
143 144 6.623331 GCCTACCGGAAATTTGAAAATTCGTA 60.623 38.462 9.46 0.00 37.62 3.43
144 145 5.705902 CCTACCGGAAATTTGAAAATTCGT 58.294 37.500 9.46 0.00 37.62 3.85
145 146 4.561213 GCCTACCGGAAATTTGAAAATTCG 59.439 41.667 9.46 2.88 37.62 3.34
146 147 4.561213 CGCCTACCGGAAATTTGAAAATTC 59.439 41.667 9.46 0.00 37.62 2.17
147 148 4.490743 CGCCTACCGGAAATTTGAAAATT 58.509 39.130 9.46 0.00 40.15 1.82
149 150 3.562567 CGCCTACCGGAAATTTGAAAA 57.437 42.857 9.46 0.00 0.00 2.29
161 162 3.379445 ACACACTCCCGCCTACCG 61.379 66.667 0.00 0.00 0.00 4.02
162 163 2.264794 CACACACTCCCGCCTACC 59.735 66.667 0.00 0.00 0.00 3.18
163 164 1.252904 TACCACACACTCCCGCCTAC 61.253 60.000 0.00 0.00 0.00 3.18
164 165 1.077086 TACCACACACTCCCGCCTA 59.923 57.895 0.00 0.00 0.00 3.93
165 166 2.203728 TACCACACACTCCCGCCT 60.204 61.111 0.00 0.00 0.00 5.52
167 168 1.019278 CATGTACCACACACTCCCGC 61.019 60.000 0.00 0.00 40.86 6.13
168 169 0.391130 CCATGTACCACACACTCCCG 60.391 60.000 0.00 0.00 40.86 5.14
170 171 0.676782 GGCCATGTACCACACACTCC 60.677 60.000 0.00 0.00 40.86 3.85
172 173 0.771127 AAGGCCATGTACCACACACT 59.229 50.000 5.01 0.00 40.86 3.55
173 174 0.881118 CAAGGCCATGTACCACACAC 59.119 55.000 5.01 0.00 40.86 3.82
174 175 0.251121 CCAAGGCCATGTACCACACA 60.251 55.000 5.01 0.00 42.69 3.72
175 176 0.037590 TCCAAGGCCATGTACCACAC 59.962 55.000 5.01 0.00 0.00 3.82
176 177 0.998928 ATCCAAGGCCATGTACCACA 59.001 50.000 5.01 0.00 0.00 4.17
178 179 2.578480 TGTTATCCAAGGCCATGTACCA 59.422 45.455 5.01 0.00 0.00 3.25
179 180 3.290948 TGTTATCCAAGGCCATGTACC 57.709 47.619 5.01 0.00 0.00 3.34
181 182 5.954752 TGAAATTGTTATCCAAGGCCATGTA 59.045 36.000 5.01 0.00 36.25 2.29
183 184 5.341872 TGAAATTGTTATCCAAGGCCATG 57.658 39.130 5.01 2.05 36.25 3.66
184 185 7.345392 ACTTATGAAATTGTTATCCAAGGCCAT 59.655 33.333 5.01 0.00 36.25 4.40
185 186 6.667414 ACTTATGAAATTGTTATCCAAGGCCA 59.333 34.615 5.01 0.00 36.25 5.36
186 187 7.112452 ACTTATGAAATTGTTATCCAAGGCC 57.888 36.000 0.00 0.00 36.25 5.19
187 188 8.250332 TGAACTTATGAAATTGTTATCCAAGGC 58.750 33.333 0.00 0.00 36.25 4.35
192 1985 9.559958 CACAGTGAACTTATGAAATTGTTATCC 57.440 33.333 0.00 0.00 0.00 2.59
198 1991 5.451908 ACGCACAGTGAACTTATGAAATTG 58.548 37.500 4.15 0.00 0.00 2.32
204 1997 6.310467 ACTTATGTACGCACAGTGAACTTATG 59.690 38.462 4.15 6.57 38.30 1.90
207 2000 4.447724 CACTTATGTACGCACAGTGAACTT 59.552 41.667 4.15 0.30 39.70 2.66
209 2002 3.985279 TCACTTATGTACGCACAGTGAAC 59.015 43.478 4.15 0.00 41.54 3.18
212 2005 3.181544 CGTTCACTTATGTACGCACAGTG 60.182 47.826 0.00 0.00 41.72 3.66
217 3356 4.163458 TCTTCGTTCACTTATGTACGCA 57.837 40.909 2.08 0.00 45.95 5.24
218 3357 3.546670 CCTCTTCGTTCACTTATGTACGC 59.453 47.826 2.08 0.00 45.95 4.42
221 3360 5.014858 ACCTCCTCTTCGTTCACTTATGTA 58.985 41.667 0.00 0.00 0.00 2.29
225 3364 3.493334 TCACCTCCTCTTCGTTCACTTA 58.507 45.455 0.00 0.00 0.00 2.24
227 3366 1.996798 TCACCTCCTCTTCGTTCACT 58.003 50.000 0.00 0.00 0.00 3.41
231 3370 7.451877 ACACATATATATCACCTCCTCTTCGTT 59.548 37.037 0.00 0.00 0.00 3.85
232 3371 6.948886 ACACATATATATCACCTCCTCTTCGT 59.051 38.462 0.00 0.00 0.00 3.85
234 3373 8.031864 CACACACATATATATCACCTCCTCTTC 58.968 40.741 0.00 0.00 0.00 2.87
235 3374 7.038729 CCACACACATATATATCACCTCCTCTT 60.039 40.741 0.00 0.00 0.00 2.85
241 3380 5.997746 GCAACCACACACATATATATCACCT 59.002 40.000 0.00 0.00 0.00 4.00
242 3381 5.997746 AGCAACCACACACATATATATCACC 59.002 40.000 0.00 0.00 0.00 4.02
243 3382 6.147821 GGAGCAACCACACACATATATATCAC 59.852 42.308 0.00 0.00 38.79 3.06
244 3383 6.183361 TGGAGCAACCACACACATATATATCA 60.183 38.462 0.00 0.00 44.64 2.15
246 3385 6.186420 TGGAGCAACCACACACATATATAT 57.814 37.500 0.00 0.00 44.64 0.86
248 3387 4.502105 TGGAGCAACCACACACATATAT 57.498 40.909 0.00 0.00 44.64 0.86
249 3388 3.990959 TGGAGCAACCACACACATATA 57.009 42.857 0.00 0.00 44.64 0.86
250 3389 2.877097 TGGAGCAACCACACACATAT 57.123 45.000 0.00 0.00 44.64 1.78
260 3399 3.014623 GTGGGTAGTATTTGGAGCAACC 58.985 50.000 0.00 0.00 39.54 3.77
261 3400 3.014623 GGTGGGTAGTATTTGGAGCAAC 58.985 50.000 0.00 0.00 0.00 4.17
262 3401 2.645297 TGGTGGGTAGTATTTGGAGCAA 59.355 45.455 0.00 0.00 0.00 3.91
263 3402 2.026636 GTGGTGGGTAGTATTTGGAGCA 60.027 50.000 0.00 0.00 0.00 4.26
265 3404 2.235402 ACGTGGTGGGTAGTATTTGGAG 59.765 50.000 0.00 0.00 0.00 3.86
266 3405 2.259012 ACGTGGTGGGTAGTATTTGGA 58.741 47.619 0.00 0.00 0.00 3.53
267 3406 2.773993 ACGTGGTGGGTAGTATTTGG 57.226 50.000 0.00 0.00 0.00 3.28
268 3407 3.119531 TCGTACGTGGTGGGTAGTATTTG 60.120 47.826 16.05 0.00 0.00 2.32
269 3408 3.088532 TCGTACGTGGTGGGTAGTATTT 58.911 45.455 16.05 0.00 0.00 1.40
270 3409 2.722094 TCGTACGTGGTGGGTAGTATT 58.278 47.619 16.05 0.00 0.00 1.89
271 3410 2.418368 TCGTACGTGGTGGGTAGTAT 57.582 50.000 16.05 0.00 0.00 2.12
273 3412 0.598065 GTTCGTACGTGGTGGGTAGT 59.402 55.000 16.05 0.00 0.00 2.73
276 3415 2.336088 CGTTCGTACGTGGTGGGT 59.664 61.111 16.05 0.00 42.72 4.51
286 3425 0.109458 AGCATCGCTGAACGTTCGTA 60.109 50.000 22.48 5.99 44.19 3.43
287 3426 1.344942 GAGCATCGCTGAACGTTCGT 61.345 55.000 22.48 4.23 39.88 3.85
288 3427 1.341802 GAGCATCGCTGAACGTTCG 59.658 57.895 22.48 17.48 39.88 3.95
290 3429 2.153913 GTGAGCATCGCTGAACGTT 58.846 52.632 0.00 0.00 43.69 3.99
307 3446 2.660552 GTACCACGCACGCACAGT 60.661 61.111 0.00 0.00 0.00 3.55
308 3447 3.762992 CGTACCACGCACGCACAG 61.763 66.667 0.00 0.00 33.65 3.66
309 3448 3.769875 TTCGTACCACGCACGCACA 62.770 57.895 0.00 0.00 42.21 4.57
310 3449 3.031457 TTCGTACCACGCACGCAC 61.031 61.111 0.00 0.00 42.21 5.34
311 3450 3.031457 GTTCGTACCACGCACGCA 61.031 61.111 0.00 0.00 42.21 5.24
314 3453 2.367344 GGACGTTCGTACCACGCAC 61.367 63.158 11.24 6.77 42.21 5.34
315 3454 2.050168 GGACGTTCGTACCACGCA 60.050 61.111 11.24 0.00 42.21 5.24
316 3455 3.167945 CGGACGTTCGTACCACGC 61.168 66.667 8.45 5.51 42.21 5.34
317 3456 2.502510 CCGGACGTTCGTACCACG 60.503 66.667 16.40 10.03 44.19 4.94
318 3457 2.126346 CCCGGACGTTCGTACCAC 60.126 66.667 16.40 0.00 0.00 4.16
320 3459 3.976902 CTGCCCGGACGTTCGTACC 62.977 68.421 16.40 3.28 0.00 3.34
322 3461 3.751246 CCTGCCCGGACGTTCGTA 61.751 66.667 16.40 0.00 33.16 3.43
330 3924 2.682494 GTCTACCACCTGCCCGGA 60.682 66.667 0.73 0.00 36.31 5.14
333 3927 3.782443 CCCGTCTACCACCTGCCC 61.782 72.222 0.00 0.00 0.00 5.36
341 3935 1.135721 GTACCACACATCCCGTCTACC 59.864 57.143 0.00 0.00 0.00 3.18
342 3936 1.202222 CGTACCACACATCCCGTCTAC 60.202 57.143 0.00 0.00 0.00 2.59
343 3937 1.097232 CGTACCACACATCCCGTCTA 58.903 55.000 0.00 0.00 0.00 2.59
344 3938 0.896940 ACGTACCACACATCCCGTCT 60.897 55.000 0.00 0.00 0.00 4.18
345 3939 0.734942 CACGTACCACACATCCCGTC 60.735 60.000 0.00 0.00 0.00 4.79
347 3941 1.447140 CCACGTACCACACATCCCG 60.447 63.158 0.00 0.00 0.00 5.14
351 3948 0.605319 CAAGGCCACGTACCACACAT 60.605 55.000 5.01 0.00 0.00 3.21
421 4018 5.985530 TGAAGCAGCTACACATATGTATCAC 59.014 40.000 8.32 0.00 40.57 3.06
427 4024 5.583854 AGTCTTTGAAGCAGCTACACATATG 59.416 40.000 0.00 0.00 0.00 1.78
428 4025 5.738909 AGTCTTTGAAGCAGCTACACATAT 58.261 37.500 0.00 0.00 0.00 1.78
429 4026 5.152623 AGTCTTTGAAGCAGCTACACATA 57.847 39.130 0.00 0.00 0.00 2.29
430 4027 4.013267 AGTCTTTGAAGCAGCTACACAT 57.987 40.909 0.00 0.00 0.00 3.21
431 4028 3.475566 AGTCTTTGAAGCAGCTACACA 57.524 42.857 0.00 0.00 0.00 3.72
432 4029 3.680458 GGTAGTCTTTGAAGCAGCTACAC 59.320 47.826 0.00 0.00 32.48 2.90
436 4034 1.699634 TGGGTAGTCTTTGAAGCAGCT 59.300 47.619 0.00 0.00 0.00 4.24
460 4058 2.028839 TGAACGTTCGTACATGGTGGAT 60.029 45.455 22.48 0.00 0.00 3.41
461 4059 1.340568 TGAACGTTCGTACATGGTGGA 59.659 47.619 22.48 0.00 0.00 4.02
462 4060 1.724623 CTGAACGTTCGTACATGGTGG 59.275 52.381 22.48 0.32 0.00 4.61
463 4061 1.126113 GCTGAACGTTCGTACATGGTG 59.874 52.381 22.48 5.93 0.00 4.17
468 4066 1.333115 CATCGCTGAACGTTCGTACA 58.667 50.000 22.48 7.92 44.19 2.90
549 4148 3.134623 TGTACATCCAAATCAGCCGAGAT 59.865 43.478 0.00 0.00 0.00 2.75
602 4201 3.408150 GCAAAGCGTCAATCTCGTTAAG 58.592 45.455 0.00 0.00 0.00 1.85
734 4347 0.913451 ATCCCAGCAACCTGAGCTCT 60.913 55.000 16.19 0.00 41.14 4.09
735 4348 0.747283 CATCCCAGCAACCTGAGCTC 60.747 60.000 6.82 6.82 41.14 4.09
736 4349 1.302285 CATCCCAGCAACCTGAGCT 59.698 57.895 0.00 0.00 44.62 4.09
737 4350 2.413142 GCATCCCAGCAACCTGAGC 61.413 63.158 0.00 0.00 41.77 4.26
738 4351 1.001764 TGCATCCCAGCAACCTGAG 60.002 57.895 0.00 0.00 42.46 3.35
740 4353 0.035152 TACTGCATCCCAGCAACCTG 60.035 55.000 0.00 0.00 45.78 4.00
743 4371 2.094675 ACATTACTGCATCCCAGCAAC 58.905 47.619 0.00 0.00 45.78 4.17
757 4385 1.405933 GGGGTGGACGGTACACATTAC 60.406 57.143 24.02 11.13 40.54 1.89
777 4405 4.263572 TGAGCGGTGGTGGTTGGG 62.264 66.667 0.00 0.00 0.00 4.12
845 4474 1.068083 CAGTGAGCGTGTGAGGTGT 59.932 57.895 0.00 0.00 0.00 4.16
856 4485 2.365635 TAGGGAGGGGCAGTGAGC 60.366 66.667 0.00 0.00 44.65 4.26
857 4486 2.439104 GCTAGGGAGGGGCAGTGAG 61.439 68.421 0.00 0.00 0.00 3.51
865 4494 0.116143 AGATGGCTAGCTAGGGAGGG 59.884 60.000 22.10 0.00 0.00 4.30
929 4558 3.647590 TGGATATAGACCAGCATGCAGAA 59.352 43.478 21.98 0.00 33.22 3.02
940 4569 6.159988 GCTAGTGTGATTGTGGATATAGACC 58.840 44.000 0.00 0.00 0.00 3.85
941 4570 6.159988 GGCTAGTGTGATTGTGGATATAGAC 58.840 44.000 0.00 0.00 0.00 2.59
951 4580 4.621747 GCTTCTAGTGGCTAGTGTGATTGT 60.622 45.833 3.48 0.00 35.72 2.71
953 4587 3.515502 TGCTTCTAGTGGCTAGTGTGATT 59.484 43.478 10.04 0.00 35.72 2.57
1110 4744 6.691818 ACGACTAGTTAATTCATGCTAGTTCG 59.308 38.462 0.00 13.47 42.66 3.95
1130 4764 4.475345 AGATTCCTAGCCTAATGACGACT 58.525 43.478 0.00 0.00 0.00 4.18
1191 4825 5.324409 TGGCCTCTACATGAACAGAAAAAT 58.676 37.500 3.32 0.00 0.00 1.82
1237 4871 2.831742 CCGCCGTAGCCCTCTACA 60.832 66.667 3.75 0.00 44.17 2.74
1341 5008 4.365505 GATAGCCGCCGCCTCCTC 62.366 72.222 0.00 0.00 34.57 3.71
1344 5011 4.671569 CTGGATAGCCGCCGCCTC 62.672 72.222 0.00 0.00 36.79 4.70
1347 5014 4.971125 GTCCTGGATAGCCGCCGC 62.971 72.222 0.00 0.00 36.79 6.53
1348 5015 3.536917 TGTCCTGGATAGCCGCCG 61.537 66.667 0.00 0.00 36.79 6.46
1349 5016 2.109181 GTGTCCTGGATAGCCGCC 59.891 66.667 0.00 0.00 36.79 6.13
1350 5017 2.279517 CGTGTCCTGGATAGCCGC 60.280 66.667 0.00 0.00 36.79 6.53
1351 5018 2.417516 CCGTGTCCTGGATAGCCG 59.582 66.667 0.00 0.00 36.79 5.52
1352 5019 1.144057 CACCGTGTCCTGGATAGCC 59.856 63.158 0.00 0.00 0.00 3.93
1353 5020 1.144057 CCACCGTGTCCTGGATAGC 59.856 63.158 0.00 0.00 0.00 2.97
1354 5021 0.747255 CTCCACCGTGTCCTGGATAG 59.253 60.000 0.00 0.00 35.95 2.08
1355 5022 0.686441 CCTCCACCGTGTCCTGGATA 60.686 60.000 0.00 0.00 35.95 2.59
1356 5023 1.990060 CCTCCACCGTGTCCTGGAT 60.990 63.158 0.00 0.00 35.95 3.41
1357 5024 2.603473 CCTCCACCGTGTCCTGGA 60.603 66.667 0.00 0.00 35.20 3.86
1358 5025 2.603473 TCCTCCACCGTGTCCTGG 60.603 66.667 0.00 0.00 0.00 4.45
1359 5026 2.650116 CCTCCTCCACCGTGTCCTG 61.650 68.421 0.00 0.00 0.00 3.86
1360 5027 2.283966 CCTCCTCCACCGTGTCCT 60.284 66.667 0.00 0.00 0.00 3.85
1361 5028 2.603776 ACCTCCTCCACCGTGTCC 60.604 66.667 0.00 0.00 0.00 4.02
1362 5029 2.657237 CACCTCCTCCACCGTGTC 59.343 66.667 0.00 0.00 0.00 3.67
1363 5030 2.923035 CCACCTCCTCCACCGTGT 60.923 66.667 0.00 0.00 0.00 4.49
1364 5031 4.394712 GCCACCTCCTCCACCGTG 62.395 72.222 0.00 0.00 0.00 4.94
1368 5035 3.775654 CTCCGCCACCTCCTCCAC 61.776 72.222 0.00 0.00 0.00 4.02
1372 5039 4.075793 TAGCCTCCGCCACCTCCT 62.076 66.667 0.00 0.00 34.57 3.69
1373 5040 3.851128 GTAGCCTCCGCCACCTCC 61.851 72.222 0.00 0.00 34.57 4.30
1936 6010 4.758251 TGACATCCACTGCCGCCG 62.758 66.667 0.00 0.00 0.00 6.46
2090 6164 2.002899 CAACGTCACGAGTTGCACA 58.997 52.632 2.91 0.00 41.77 4.57
2174 6299 0.514691 GGGCTCTCGTACGTATACCG 59.485 60.000 16.05 0.00 44.03 4.02
2175 6300 0.514691 CGGGCTCTCGTACGTATACC 59.485 60.000 16.05 12.63 0.00 2.73
2176 6301 1.221414 ACGGGCTCTCGTACGTATAC 58.779 55.000 16.05 3.96 41.98 1.47
2177 6302 1.953559 AACGGGCTCTCGTACGTATA 58.046 50.000 16.05 1.01 43.07 1.47
2178 6303 1.098050 AAACGGGCTCTCGTACGTAT 58.902 50.000 16.05 0.00 43.07 3.06
2179 6304 0.168788 CAAACGGGCTCTCGTACGTA 59.831 55.000 16.05 4.02 43.07 3.57
2180 6305 1.080974 CAAACGGGCTCTCGTACGT 60.081 57.895 16.05 0.00 43.07 3.57
2181 6306 2.442188 GCAAACGGGCTCTCGTACG 61.442 63.158 9.53 9.53 43.07 3.67
2278 6417 9.109393 ACATGGAAATTGATACATACAGTACAC 57.891 33.333 0.00 0.00 35.05 2.90
2326 6465 5.253330 TCCTCTGTGATTTTATCCCACAAC 58.747 41.667 0.00 0.00 39.89 3.32
2333 6472 8.169977 TGGCAATATTCCTCTGTGATTTTATC 57.830 34.615 0.00 0.00 0.00 1.75
2354 6493 1.946768 GCACAGTGTAGAACTTTGGCA 59.053 47.619 1.61 0.00 37.12 4.92
2370 6509 3.485394 TGCAGAAGGAATTAAGTGCACA 58.515 40.909 21.04 0.00 36.05 4.57
2390 6529 2.121786 GCAGCATTGAAATACGGCATG 58.878 47.619 0.00 0.00 0.00 4.06
2472 10080 0.965439 TGAATTCCTTTTGTGGCCGG 59.035 50.000 2.27 0.00 0.00 6.13
2476 10084 3.509967 GGGTAGGTGAATTCCTTTTGTGG 59.490 47.826 2.27 0.00 38.86 4.17
2512 10120 4.865365 GCAATGGAAGAGTAGTGACTGTAC 59.135 45.833 0.00 0.00 35.45 2.90
2513 10121 4.380550 CGCAATGGAAGAGTAGTGACTGTA 60.381 45.833 0.00 0.00 35.45 2.74
2516 10124 2.675317 GCGCAATGGAAGAGTAGTGACT 60.675 50.000 0.30 0.00 39.20 3.41
2522 10130 3.316588 TGTTTTTGCGCAATGGAAGAGTA 59.683 39.130 25.64 1.84 0.00 2.59
2590 10271 1.135972 CGGTGACATACAAGCTTGTGC 60.136 52.381 36.50 23.63 42.31 4.57
2599 10280 3.628008 AGGATAGTGACGGTGACATACA 58.372 45.455 0.00 0.00 0.00 2.29
2616 10297 1.528824 CGCCACCAAGGATGAGGAT 59.471 57.895 0.00 0.00 41.22 3.24
2622 10303 0.625849 ATTTCTCCGCCACCAAGGAT 59.374 50.000 0.00 0.00 41.22 3.24
2660 10341 8.453320 TGAGTTGAATATGTTACATTTCAGCAG 58.547 33.333 23.41 0.00 33.41 4.24
2692 10375 8.198109 TGTTTCATTCATTTCCGTTTTCCTTTA 58.802 29.630 0.00 0.00 0.00 1.85
2718 10431 7.993183 TCCACTAAGAAAAGATGACAAAACTCT 59.007 33.333 0.00 0.00 0.00 3.24
2726 10439 6.424207 AGACGTTTCCACTAAGAAAAGATGAC 59.576 38.462 6.89 0.00 37.40 3.06
2863 11227 7.119846 GGTTGTGTTTTTCTGTATGCTCTAGAT 59.880 37.037 0.00 0.00 0.00 1.98
2902 11267 9.016623 GGAACCGTTTAATATGCTCAATTAAAC 57.983 33.333 20.26 20.26 46.57 2.01
2903 11268 8.192110 GGGAACCGTTTAATATGCTCAATTAAA 58.808 33.333 7.10 7.10 40.86 1.52
2904 11269 7.708998 GGGAACCGTTTAATATGCTCAATTAA 58.291 34.615 0.00 0.00 40.86 1.40
2905 11270 7.266922 GGGAACCGTTTAATATGCTCAATTA 57.733 36.000 0.00 0.00 40.86 1.40
2906 11271 6.144078 GGGAACCGTTTAATATGCTCAATT 57.856 37.500 0.00 0.00 40.86 2.32
2907 11272 5.767816 GGGAACCGTTTAATATGCTCAAT 57.232 39.130 0.00 0.00 40.86 2.57
2924 11289 3.055747 CAGAGGAGTTAGACAAGGGGAAC 60.056 52.174 0.00 0.00 0.00 3.62
2925 11290 3.173965 CAGAGGAGTTAGACAAGGGGAA 58.826 50.000 0.00 0.00 0.00 3.97
2926 11291 2.559931 CCAGAGGAGTTAGACAAGGGGA 60.560 54.545 0.00 0.00 0.00 4.81
2927 11292 1.834263 CCAGAGGAGTTAGACAAGGGG 59.166 57.143 0.00 0.00 0.00 4.79
2928 11293 1.208293 GCCAGAGGAGTTAGACAAGGG 59.792 57.143 0.00 0.00 0.00 3.95
2929 11294 1.902508 TGCCAGAGGAGTTAGACAAGG 59.097 52.381 0.00 0.00 0.00 3.61
2930 11295 3.431486 GGATGCCAGAGGAGTTAGACAAG 60.431 52.174 0.00 0.00 0.00 3.16
2931 11296 2.501723 GGATGCCAGAGGAGTTAGACAA 59.498 50.000 0.00 0.00 0.00 3.18
2932 11297 2.111384 GGATGCCAGAGGAGTTAGACA 58.889 52.381 0.00 0.00 0.00 3.41
2933 11298 1.414550 GGGATGCCAGAGGAGTTAGAC 59.585 57.143 0.00 0.00 0.00 2.59
2934 11299 1.292242 AGGGATGCCAGAGGAGTTAGA 59.708 52.381 5.86 0.00 0.00 2.10
2935 11300 1.415659 CAGGGATGCCAGAGGAGTTAG 59.584 57.143 5.86 0.00 0.00 2.34
2936 11301 1.273838 ACAGGGATGCCAGAGGAGTTA 60.274 52.381 5.86 0.00 0.00 2.24
2937 11302 0.548682 ACAGGGATGCCAGAGGAGTT 60.549 55.000 5.86 0.00 0.00 3.01
2938 11303 0.548682 AACAGGGATGCCAGAGGAGT 60.549 55.000 5.86 0.00 0.00 3.85
2939 11304 0.622665 AAACAGGGATGCCAGAGGAG 59.377 55.000 5.86 0.00 0.00 3.69
2940 11305 0.329261 CAAACAGGGATGCCAGAGGA 59.671 55.000 5.86 0.00 0.00 3.71
2941 11306 0.682209 CCAAACAGGGATGCCAGAGG 60.682 60.000 5.86 0.00 0.00 3.69
2942 11307 2.877975 CCAAACAGGGATGCCAGAG 58.122 57.895 5.86 0.00 0.00 3.35
2952 11317 1.566231 AGATTCTAGGGCCCAAACAGG 59.434 52.381 27.56 6.94 37.03 4.00
2953 11318 4.503714 TTAGATTCTAGGGCCCAAACAG 57.496 45.455 27.56 15.27 0.00 3.16
2954 11319 4.325030 CCTTTAGATTCTAGGGCCCAAACA 60.325 45.833 27.56 5.19 0.00 2.83
2955 11320 4.207955 CCTTTAGATTCTAGGGCCCAAAC 58.792 47.826 27.56 8.65 0.00 2.93
2956 11321 3.204382 CCCTTTAGATTCTAGGGCCCAAA 59.796 47.826 27.56 15.83 42.04 3.28
2957 11322 2.783510 CCCTTTAGATTCTAGGGCCCAA 59.216 50.000 27.56 10.58 42.04 4.12
2958 11323 2.418669 CCCTTTAGATTCTAGGGCCCA 58.581 52.381 27.56 9.36 42.04 5.36
2959 11324 1.705745 CCCCTTTAGATTCTAGGGCCC 59.294 57.143 16.46 16.46 46.07 5.80
2960 11325 2.419686 ACCCCTTTAGATTCTAGGGCC 58.580 52.381 14.09 0.00 46.07 5.80
2961 11326 4.521536 AAACCCCTTTAGATTCTAGGGC 57.478 45.455 14.09 0.00 46.07 5.19
2962 11327 7.812306 TGAATAAACCCCTTTAGATTCTAGGG 58.188 38.462 12.93 12.93 46.83 3.53
2963 11328 8.495260 ACTGAATAAACCCCTTTAGATTCTAGG 58.505 37.037 0.00 0.00 0.00 3.02
2964 11329 9.907229 AACTGAATAAACCCCTTTAGATTCTAG 57.093 33.333 0.00 0.00 0.00 2.43
2995 11360 9.859427 CTCCAAAATTGATAGCATGTTAAAGAA 57.141 29.630 0.00 0.00 0.00 2.52
2996 11361 8.469200 CCTCCAAAATTGATAGCATGTTAAAGA 58.531 33.333 0.00 0.00 0.00 2.52
2997 11362 8.469200 TCCTCCAAAATTGATAGCATGTTAAAG 58.531 33.333 0.00 0.00 0.00 1.85
2998 11363 8.359875 TCCTCCAAAATTGATAGCATGTTAAA 57.640 30.769 0.00 0.00 0.00 1.52
2999 11364 7.615365 ACTCCTCCAAAATTGATAGCATGTTAA 59.385 33.333 0.00 0.00 0.00 2.01
3000 11365 7.067372 CACTCCTCCAAAATTGATAGCATGTTA 59.933 37.037 0.00 0.00 0.00 2.41
3001 11366 5.954150 ACTCCTCCAAAATTGATAGCATGTT 59.046 36.000 0.00 0.00 0.00 2.71
3002 11367 5.359009 CACTCCTCCAAAATTGATAGCATGT 59.641 40.000 0.00 0.00 0.00 3.21
3003 11368 5.591472 TCACTCCTCCAAAATTGATAGCATG 59.409 40.000 0.00 0.00 0.00 4.06
3004 11369 5.759059 TCACTCCTCCAAAATTGATAGCAT 58.241 37.500 0.00 0.00 0.00 3.79
3005 11370 5.178096 TCACTCCTCCAAAATTGATAGCA 57.822 39.130 0.00 0.00 0.00 3.49
3006 11371 4.578105 CCTCACTCCTCCAAAATTGATAGC 59.422 45.833 0.00 0.00 0.00 2.97
3007 11372 5.749462 ACCTCACTCCTCCAAAATTGATAG 58.251 41.667 0.00 0.00 0.00 2.08
3008 11373 5.250543 TGACCTCACTCCTCCAAAATTGATA 59.749 40.000 0.00 0.00 0.00 2.15
3009 11374 4.043310 TGACCTCACTCCTCCAAAATTGAT 59.957 41.667 0.00 0.00 0.00 2.57
3010 11375 3.394274 TGACCTCACTCCTCCAAAATTGA 59.606 43.478 0.00 0.00 0.00 2.57
3011 11376 3.754965 TGACCTCACTCCTCCAAAATTG 58.245 45.455 0.00 0.00 0.00 2.32
3012 11377 3.812167 GCTGACCTCACTCCTCCAAAATT 60.812 47.826 0.00 0.00 0.00 1.82
3013 11378 2.290577 GCTGACCTCACTCCTCCAAAAT 60.291 50.000 0.00 0.00 0.00 1.82
3014 11379 1.072331 GCTGACCTCACTCCTCCAAAA 59.928 52.381 0.00 0.00 0.00 2.44
3015 11380 0.687354 GCTGACCTCACTCCTCCAAA 59.313 55.000 0.00 0.00 0.00 3.28
3016 11381 1.536073 CGCTGACCTCACTCCTCCAA 61.536 60.000 0.00 0.00 0.00 3.53
3017 11382 1.979155 CGCTGACCTCACTCCTCCA 60.979 63.158 0.00 0.00 0.00 3.86
3018 11383 1.040339 ATCGCTGACCTCACTCCTCC 61.040 60.000 0.00 0.00 0.00 4.30
3019 11384 0.820871 AATCGCTGACCTCACTCCTC 59.179 55.000 0.00 0.00 0.00 3.71
3020 11385 0.534412 CAATCGCTGACCTCACTCCT 59.466 55.000 0.00 0.00 0.00 3.69
3021 11386 0.460987 CCAATCGCTGACCTCACTCC 60.461 60.000 0.00 0.00 0.00 3.85
3022 11387 0.460987 CCCAATCGCTGACCTCACTC 60.461 60.000 0.00 0.00 0.00 3.51
3023 11388 1.599047 CCCAATCGCTGACCTCACT 59.401 57.895 0.00 0.00 0.00 3.41
3024 11389 1.450312 CCCCAATCGCTGACCTCAC 60.450 63.158 0.00 0.00 0.00 3.51
3025 11390 0.982852 ATCCCCAATCGCTGACCTCA 60.983 55.000 0.00 0.00 0.00 3.86
3026 11391 1.001406 CTATCCCCAATCGCTGACCTC 59.999 57.143 0.00 0.00 0.00 3.85
3027 11392 1.051812 CTATCCCCAATCGCTGACCT 58.948 55.000 0.00 0.00 0.00 3.85
3028 11393 0.603975 GCTATCCCCAATCGCTGACC 60.604 60.000 0.00 0.00 0.00 4.02
3029 11394 0.603975 GGCTATCCCCAATCGCTGAC 60.604 60.000 0.00 0.00 0.00 3.51
3030 11395 0.764369 AGGCTATCCCCAATCGCTGA 60.764 55.000 0.00 0.00 0.00 4.26
3031 11396 0.109342 AAGGCTATCCCCAATCGCTG 59.891 55.000 0.00 0.00 0.00 5.18
3032 11397 2.544768 AAGGCTATCCCCAATCGCT 58.455 52.632 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.