Multiple sequence alignment - TraesCS2A01G513800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G513800 chr2A 100.000 3691 0 0 1 3691 738296867 738300557 0.000000e+00 6817.0
1 TraesCS2A01G513800 chr7D 90.209 2584 213 17 1138 3691 27109581 27112154 0.000000e+00 3334.0
2 TraesCS2A01G513800 chr7D 91.345 1063 91 1 1 1063 27108301 27109362 0.000000e+00 1452.0
3 TraesCS2A01G513800 chr5D 81.055 3774 563 102 1 3687 482834775 482838483 0.000000e+00 2868.0
4 TraesCS2A01G513800 chr2B 80.952 126 19 4 2821 2942 73198499 73198623 1.090000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G513800 chr2A 738296867 738300557 3690 False 6817 6817 100.000 1 3691 1 chr2A.!!$F1 3690
1 TraesCS2A01G513800 chr7D 27108301 27112154 3853 False 2393 3334 90.777 1 3691 2 chr7D.!!$F1 3690
2 TraesCS2A01G513800 chr5D 482834775 482838483 3708 False 2868 2868 81.055 1 3687 1 chr5D.!!$F1 3686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 685 0.107945 CTGGTAGCTCTGCCAAGTCC 60.108 60.0 8.04 0.00 44.63 3.85 F
1073 1076 0.306228 TGTACAACACGTGCACATGC 59.694 50.0 17.22 3.14 35.03 4.06 F
2538 2699 0.393537 GGTGGCCATCAGTCAAGGAG 60.394 60.0 12.38 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1844 0.034198 TCGGTTCCATCAGCGTTCAA 59.966 50.0 0.0 0.0 38.78 2.69 R
2688 2895 0.970640 TTCTCCCCGTCGAATTGTCA 59.029 50.0 0.0 0.0 0.00 3.58 R
3417 3648 0.396435 ACAGAATGGTTGCCGTCAGA 59.604 50.0 0.0 0.0 43.62 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 3.149005 TGATTTTTAGGGAGCGTTGGT 57.851 42.857 0.00 0.00 0.00 3.67
114 115 3.750371 TGGTGGACACTGAAAACATAGG 58.250 45.455 2.13 0.00 0.00 2.57
137 138 4.418013 CAATTCAATTGGTGCGAGTACA 57.582 40.909 5.42 0.00 36.63 2.90
140 141 2.355197 TCAATTGGTGCGAGTACATGG 58.645 47.619 5.42 0.00 0.00 3.66
172 173 2.740256 GCTTGCTAGTGTTAGGAGGCTC 60.740 54.545 5.78 5.78 43.80 4.70
177 178 3.429684 GCTAGTGTTAGGAGGCTCAAGAC 60.430 52.174 17.69 11.39 0.00 3.01
233 234 0.548682 AGGATGCCACCTCTTCCTGT 60.549 55.000 0.00 0.00 38.67 4.00
244 245 4.366267 ACCTCTTCCTGTAGGTGATGATT 58.634 43.478 0.00 0.00 44.53 2.57
254 256 6.315642 CCTGTAGGTGATGATTCATATGCATC 59.684 42.308 0.19 8.25 39.02 3.91
259 261 5.886474 GGTGATGATTCATATGCATCCTGAT 59.114 40.000 12.06 0.51 38.06 2.90
263 265 8.303876 TGATGATTCATATGCATCCTGATTTTG 58.696 33.333 12.06 0.00 38.06 2.44
274 276 4.970662 TCCTGATTTTGAGCAATGTAGC 57.029 40.909 0.00 0.00 0.00 3.58
278 280 6.658816 TCCTGATTTTGAGCAATGTAGCTAAA 59.341 34.615 0.00 0.00 46.75 1.85
334 336 3.057736 CCCACTCACAGATTTTCTTGCTG 60.058 47.826 0.00 0.00 35.81 4.41
342 344 3.318839 CAGATTTTCTTGCTGGACAACCA 59.681 43.478 0.00 0.00 44.76 3.67
343 345 3.319122 AGATTTTCTTGCTGGACAACCAC 59.681 43.478 0.00 0.00 41.77 4.16
344 346 2.136298 TTTCTTGCTGGACAACCACA 57.864 45.000 0.00 0.00 41.77 4.17
360 362 5.413833 ACAACCACAATCTCTTCATGATGAC 59.586 40.000 7.19 0.00 0.00 3.06
387 389 2.359967 ACTCGGTGCTTCCTAGGGC 61.360 63.158 9.46 5.96 33.83 5.19
430 432 8.924511 ACTCATTCCGTAAAATGATAATCCAT 57.075 30.769 5.81 0.00 42.97 3.41
498 500 2.434884 AGCCTCGCACACGGAATG 60.435 61.111 0.00 0.00 40.63 2.67
519 521 8.712363 GGAATGGCACTTTCTTCTAAATTTTTC 58.288 33.333 0.00 0.00 0.00 2.29
527 529 8.905850 ACTTTCTTCTAAATTTTTCCCAACGTA 58.094 29.630 0.00 0.00 0.00 3.57
550 552 2.438868 AATTCCGCCTGTTTGCTTTC 57.561 45.000 0.00 0.00 0.00 2.62
551 553 1.327303 ATTCCGCCTGTTTGCTTTCA 58.673 45.000 0.00 0.00 0.00 2.69
559 561 4.332543 CGCCTGTTTGCTTTCATAGATACA 59.667 41.667 0.00 0.00 0.00 2.29
561 563 6.458751 CGCCTGTTTGCTTTCATAGATACAAT 60.459 38.462 0.00 0.00 0.00 2.71
587 589 0.391661 CCCTTGTGTGCTATGCTCGT 60.392 55.000 0.00 0.00 0.00 4.18
638 640 1.626654 CTAGGCACACCGCAAAGTCG 61.627 60.000 0.00 0.00 45.17 4.18
643 645 3.276091 CACCGCAAAGTCGCCACA 61.276 61.111 0.00 0.00 0.00 4.17
683 685 0.107945 CTGGTAGCTCTGCCAAGTCC 60.108 60.000 8.04 0.00 44.63 3.85
685 687 0.107945 GGTAGCTCTGCCAAGTCCAG 60.108 60.000 0.00 0.00 35.28 3.86
691 693 1.597854 CTGCCAAGTCCAGTCGCAA 60.598 57.895 0.00 0.00 0.00 4.85
739 741 4.139786 CCCCATTTGATTCACGAGATGAT 58.860 43.478 0.00 0.00 37.11 2.45
769 771 2.942376 CAATACGCATGCTTGGACCTTA 59.058 45.455 17.13 0.00 0.00 2.69
783 785 7.148018 TGCTTGGACCTTATGATTTCTTGAATC 60.148 37.037 0.00 0.00 43.67 2.52
956 959 5.169295 ACTGTAGGAGTTAAATGCTCGTTC 58.831 41.667 0.00 0.00 33.76 3.95
976 979 8.047413 TCGTTCTCTATCACACATTACAACTA 57.953 34.615 0.00 0.00 0.00 2.24
981 984 1.722464 TCACACATTACAACTACGCGC 59.278 47.619 5.73 0.00 0.00 6.86
982 985 1.457683 CACACATTACAACTACGCGCA 59.542 47.619 5.73 0.00 0.00 6.09
1021 1024 0.723981 GATGAGGTTCGCTGACAAGC 59.276 55.000 0.00 0.00 46.66 4.01
1073 1076 0.306228 TGTACAACACGTGCACATGC 59.694 50.000 17.22 3.14 35.03 4.06
1104 1107 1.095600 CCAGAGCTACGTCTGCTACA 58.904 55.000 14.63 0.00 42.40 2.74
1113 1116 4.868734 GCTACGTCTGCTACAAAAGGTATT 59.131 41.667 0.00 0.00 0.00 1.89
1116 1119 4.250464 CGTCTGCTACAAAAGGTATTCCA 58.750 43.478 0.00 0.00 35.89 3.53
1117 1120 4.092968 CGTCTGCTACAAAAGGTATTCCAC 59.907 45.833 0.00 0.00 35.89 4.02
1147 1294 8.463930 TGACAACATCTCTTTCCTGTTATTTT 57.536 30.769 0.00 0.00 32.14 1.82
1148 1295 8.352201 TGACAACATCTCTTTCCTGTTATTTTG 58.648 33.333 0.00 0.00 32.14 2.44
1149 1296 8.237811 ACAACATCTCTTTCCTGTTATTTTGT 57.762 30.769 0.00 0.00 32.14 2.83
1150 1297 8.137437 ACAACATCTCTTTCCTGTTATTTTGTG 58.863 33.333 0.00 0.00 32.14 3.33
1153 1300 4.522789 TCTCTTTCCTGTTATTTTGTGCCC 59.477 41.667 0.00 0.00 0.00 5.36
1154 1301 4.479158 TCTTTCCTGTTATTTTGTGCCCT 58.521 39.130 0.00 0.00 0.00 5.19
1155 1302 5.636123 TCTTTCCTGTTATTTTGTGCCCTA 58.364 37.500 0.00 0.00 0.00 3.53
1160 1307 7.309770 TCCTGTTATTTTGTGCCCTATTTTT 57.690 32.000 0.00 0.00 0.00 1.94
1196 1343 3.126686 CACCATGCATTGTGTATCGTCAA 59.873 43.478 20.03 0.00 0.00 3.18
1200 1349 5.393124 CATGCATTGTGTATCGTCAAGTTT 58.607 37.500 0.00 0.00 0.00 2.66
1267 1416 2.689983 CTCCAGCAACAACTCCTTTTGT 59.310 45.455 0.00 0.00 41.62 2.83
1272 1421 1.756538 CAACAACTCCTTTTGTGGGCT 59.243 47.619 0.00 0.00 39.70 5.19
1292 1441 2.499205 CGCCTGGAGTTATCGCCA 59.501 61.111 0.00 0.00 41.02 5.69
1309 1458 2.605338 CGCCATGTGAAGGTTTGTTCTG 60.605 50.000 0.00 0.00 0.00 3.02
1312 1461 3.181477 CCATGTGAAGGTTTGTTCTGCAA 60.181 43.478 0.00 0.00 34.87 4.08
1317 1466 5.105392 TGTGAAGGTTTGTTCTGCAATTTCT 60.105 36.000 0.00 0.00 36.89 2.52
1323 1481 8.409358 AGGTTTGTTCTGCAATTTCTACTAAT 57.591 30.769 0.00 0.00 36.89 1.73
1329 1487 9.897744 TGTTCTGCAATTTCTACTAATTTTCTG 57.102 29.630 0.00 0.00 0.00 3.02
1333 1491 7.090173 TGCAATTTCTACTAATTTTCTGGTGC 58.910 34.615 0.00 0.00 0.00 5.01
1344 1502 8.623030 ACTAATTTTCTGGTGCGTTTTACTAAA 58.377 29.630 0.00 0.00 0.00 1.85
1372 1530 7.446319 TCTGATATCCATTTTCATAAGTGCAGG 59.554 37.037 0.00 0.00 0.00 4.85
1394 1552 2.248280 TTACTTCCACAAGCAAGCGA 57.752 45.000 0.00 0.00 32.09 4.93
1397 1555 1.509644 CTTCCACAAGCAAGCGAGCA 61.510 55.000 6.21 0.00 36.85 4.26
1411 1569 1.399727 GCGAGCAAAAACTGTGCGTAT 60.400 47.619 0.00 0.00 46.86 3.06
1418 1576 4.793071 CAAAAACTGTGCGTATCCATCAA 58.207 39.130 0.00 0.00 0.00 2.57
1420 1578 4.621068 AAACTGTGCGTATCCATCAATG 57.379 40.909 0.00 0.00 0.00 2.82
1422 1580 1.265095 CTGTGCGTATCCATCAATGCC 59.735 52.381 0.00 0.00 0.00 4.40
1474 1632 2.257371 CGTCCCGCGAACTCTCAA 59.743 61.111 8.23 0.00 44.77 3.02
1475 1633 1.153823 CGTCCCGCGAACTCTCAAT 60.154 57.895 8.23 0.00 44.77 2.57
1541 1699 0.968901 ACCTCCCGAACGATGCTACA 60.969 55.000 0.00 0.00 0.00 2.74
1545 1703 0.999406 CCCGAACGATGCTACAACTG 59.001 55.000 0.00 0.00 0.00 3.16
1581 1739 1.072965 GGAGCAATGATCTTCCCGGAT 59.927 52.381 0.73 0.00 0.00 4.18
1601 1759 1.893137 TGCAAGTATGTGTCTCGTCCT 59.107 47.619 0.00 0.00 0.00 3.85
1628 1786 1.697432 CAGACAAACCCCTGGTGTAGA 59.303 52.381 0.00 0.00 35.34 2.59
1638 1796 2.248248 CCTGGTGTAGAGGAGTTGTCA 58.752 52.381 0.00 0.00 31.48 3.58
1722 1880 1.139058 CCGAGCTAGCAGGGTAATTGT 59.861 52.381 18.83 0.00 0.00 2.71
1734 1892 5.540911 CAGGGTAATTGTGTGCAAAATTCT 58.459 37.500 3.81 0.00 38.21 2.40
1787 1947 9.965824 TTTGTTCCATATTTTTCAGTCTTCTTC 57.034 29.630 0.00 0.00 0.00 2.87
1802 1962 6.858993 CAGTCTTCTTCGTACTAATAGCATCC 59.141 42.308 0.00 0.00 0.00 3.51
1841 2001 5.617252 AGGAACTTTATTGTTCACGAGGAA 58.383 37.500 9.18 0.00 45.74 3.36
1855 2015 5.800296 TCACGAGGAACCAAGATTTATCAA 58.200 37.500 0.00 0.00 0.00 2.57
1864 2024 5.745227 ACCAAGATTTATCAAGATCACCGT 58.255 37.500 0.00 0.00 0.00 4.83
1865 2025 5.817816 ACCAAGATTTATCAAGATCACCGTC 59.182 40.000 0.00 0.00 0.00 4.79
1876 2036 4.124851 AGATCACCGTCTTTGTCATACC 57.875 45.455 0.00 0.00 0.00 2.73
1947 2107 0.816018 TTTTCGGCGGTTTGCTCAGA 60.816 50.000 7.21 0.00 45.43 3.27
1964 2124 2.159114 TCAGATCGATTGTGATGCCGAA 60.159 45.455 0.00 0.00 34.59 4.30
1990 2150 4.811557 CGAGAACCCATTCTTAAGATGGAC 59.188 45.833 24.22 17.53 45.60 4.02
2010 2170 1.518903 GCACCCACTTGAGCCTGAAC 61.519 60.000 0.00 0.00 0.00 3.18
2023 2183 5.510430 TGAGCCTGAACTCTCAGTAAGATA 58.490 41.667 1.74 0.00 46.71 1.98
2042 2202 7.750229 AAGATATTGTATTCATCGCCAATGT 57.250 32.000 0.00 0.00 36.68 2.71
2046 2206 3.604582 TGTATTCATCGCCAATGTCACA 58.395 40.909 0.00 0.00 36.68 3.58
2057 2217 3.731867 GCCAATGTCACATTCCGATGTTC 60.732 47.826 0.00 0.00 43.92 3.18
2070 2230 3.000041 CCGATGTTCCTCGAAATGTTGA 59.000 45.455 0.00 0.00 41.12 3.18
2076 2236 4.446385 TGTTCCTCGAAATGTTGAACTACG 59.554 41.667 0.00 0.00 36.98 3.51
2091 2251 9.063739 TGTTGAACTACGTTTAACATTTTTCAC 57.936 29.630 11.46 0.00 43.49 3.18
2092 2252 9.281075 GTTGAACTACGTTTAACATTTTTCACT 57.719 29.630 0.00 0.00 40.26 3.41
2093 2253 9.493206 TTGAACTACGTTTAACATTTTTCACTC 57.507 29.630 0.00 0.00 0.00 3.51
2096 2256 5.838531 ACGTTTAACATTTTTCACTCCCA 57.161 34.783 0.00 0.00 0.00 4.37
2097 2257 6.399639 ACGTTTAACATTTTTCACTCCCAT 57.600 33.333 0.00 0.00 0.00 4.00
2098 2258 6.212955 ACGTTTAACATTTTTCACTCCCATG 58.787 36.000 0.00 0.00 0.00 3.66
2101 2261 7.096230 CGTTTAACATTTTTCACTCCCATGTTC 60.096 37.037 0.00 0.00 38.64 3.18
2105 2266 6.458210 ACATTTTTCACTCCCATGTTCATTC 58.542 36.000 0.00 0.00 0.00 2.67
2107 2268 5.710513 TTTTCACTCCCATGTTCATTCTG 57.289 39.130 0.00 0.00 0.00 3.02
2124 2285 6.511416 TCATTCTGTTTGTTTTACCATGTGG 58.489 36.000 0.00 0.00 42.17 4.17
2144 2305 2.552155 GGTTCCATGTGCAACCAGACTA 60.552 50.000 11.72 0.00 41.65 2.59
2231 2392 8.539117 TTCTCTGAAGTATGATCTAACATCCA 57.461 34.615 0.00 0.00 0.00 3.41
2294 2455 7.124901 GGGTATCTCAATCTTCTGGATATGCTA 59.875 40.741 0.00 0.00 33.71 3.49
2325 2486 6.816640 AGATTTTCCATATCTCGTTTCGTTGA 59.183 34.615 0.00 0.00 0.00 3.18
2338 2499 4.518217 GTTTCGTTGACAGTTCATCACAG 58.482 43.478 0.00 0.00 0.00 3.66
2397 2558 6.808321 TGGGACATGTAGCTAAGAGTAATT 57.192 37.500 0.00 0.00 0.00 1.40
2423 2584 2.093658 TCCTTGATCCGCTCTACCAAAC 60.094 50.000 0.00 0.00 0.00 2.93
2446 2607 0.755327 TGCACTAGCTCCTCCGCATA 60.755 55.000 0.00 0.00 42.74 3.14
2538 2699 0.393537 GGTGGCCATCAGTCAAGGAG 60.394 60.000 12.38 0.00 0.00 3.69
2564 2725 2.880890 GGCGAATGAAGCATGAACCTAT 59.119 45.455 0.00 0.00 36.08 2.57
2569 2730 5.237996 CGAATGAAGCATGAACCTATGACAT 59.762 40.000 0.00 0.00 0.00 3.06
2613 2774 7.191593 AGTCATATAGAGCCATGCATATCAA 57.808 36.000 0.00 0.00 0.00 2.57
2639 2822 2.773487 ACGTAGCAGTTTACCAATGCA 58.227 42.857 0.00 0.00 42.45 3.96
2688 2895 3.056304 GTTTGCGCCATACACATTGTTT 58.944 40.909 4.18 0.00 0.00 2.83
2693 2900 3.855154 GCGCCATACACATTGTTTGACAA 60.855 43.478 0.00 0.00 42.95 3.18
2699 2906 6.305399 CCATACACATTGTTTGACAATTCGAC 59.695 38.462 3.69 0.00 45.80 4.20
2735 2942 6.779049 TGAAGTTACCACTTACTAAGGTGAGA 59.221 38.462 0.88 0.00 43.79 3.27
2757 2965 5.842874 AGATCCACATCTAATCATCCACTCA 59.157 40.000 0.00 0.00 37.63 3.41
2774 2982 5.367644 TCCACTCATCTGTATGATTCCATGT 59.632 40.000 0.00 0.00 41.29 3.21
2819 3030 1.287041 GGCCGAACACGTGAACCTAC 61.287 60.000 25.01 6.62 0.00 3.18
2820 3031 0.598158 GCCGAACACGTGAACCTACA 60.598 55.000 25.01 0.00 0.00 2.74
2828 3039 3.127589 CACGTGAACCTACATTGACACA 58.872 45.455 10.90 0.00 0.00 3.72
2861 3072 0.603065 GTCCACAGCCCAACATTTCC 59.397 55.000 0.00 0.00 0.00 3.13
2876 3087 5.529581 ACATTTCCAAAACCAAGAACGAT 57.470 34.783 0.00 0.00 0.00 3.73
2957 3168 0.470341 GGAAGGCTTTAGCGGGATCT 59.530 55.000 0.00 0.00 43.26 2.75
2964 3175 2.485479 GCTTTAGCGGGATCTGATTCCA 60.485 50.000 15.24 0.00 37.53 3.53
2992 3203 4.208686 CTAGGGCGGGTGCGAGAC 62.209 72.222 0.00 0.00 44.10 3.36
3010 3221 3.879892 GAGACCTGCATTTCCCTTATGAC 59.120 47.826 0.00 0.00 0.00 3.06
3034 3245 4.946157 AGTCTAATCAAACCAAGCTCCATG 59.054 41.667 0.00 0.00 0.00 3.66
3051 3262 4.888917 TCCATGTGTCGTAGTTTGATCAA 58.111 39.130 3.38 3.38 0.00 2.57
3065 3276 7.067496 AGTTTGATCAATGGGATATCGTAGT 57.933 36.000 9.40 0.00 36.00 2.73
3172 3384 7.812191 TGCACATCATCTATTTACACCAAAAAC 59.188 33.333 0.00 0.00 0.00 2.43
3173 3385 7.812191 GCACATCATCTATTTACACCAAAAACA 59.188 33.333 0.00 0.00 0.00 2.83
3189 3401 1.381165 AACACGTTCAGTTGGGTGCC 61.381 55.000 0.00 0.00 33.81 5.01
3234 3447 6.883217 CCTGAAATGCCTACATATGCTTATCT 59.117 38.462 1.58 0.00 34.62 1.98
3236 3449 6.881065 TGAAATGCCTACATATGCTTATCTCC 59.119 38.462 1.58 0.00 34.62 3.71
3238 3451 5.411831 TGCCTACATATGCTTATCTCCAG 57.588 43.478 1.58 0.00 0.00 3.86
3248 3461 2.866762 GCTTATCTCCAGTTAACCAGCG 59.133 50.000 0.88 0.00 0.00 5.18
3259 3488 4.629634 CAGTTAACCAGCGACATCAACATA 59.370 41.667 0.88 0.00 0.00 2.29
3261 3490 6.478673 CAGTTAACCAGCGACATCAACATATA 59.521 38.462 0.88 0.00 0.00 0.86
3283 3512 4.870123 TCCTTGCTTGTTAAATGTGCAT 57.130 36.364 0.00 0.00 33.50 3.96
3292 3521 7.381948 TGCTTGTTAAATGTGCATACTTTTCAG 59.618 33.333 0.00 0.00 36.15 3.02
3317 3546 6.751888 GTGGTTGTTATTATCCATTTCACAGC 59.248 38.462 0.00 0.00 32.45 4.40
3319 3548 6.974622 GGTTGTTATTATCCATTTCACAGCAG 59.025 38.462 0.00 0.00 0.00 4.24
3334 3563 4.277921 TCACAGCAGTTTGCATATGTGAAA 59.722 37.500 17.02 1.55 46.17 2.69
3348 3577 6.418819 GCATATGTGAAATCTTCCCATTTTCG 59.581 38.462 4.29 0.00 33.15 3.46
3395 3626 4.239428 TCAGGCATGAAGAAATCCATCA 57.761 40.909 0.00 0.00 30.61 3.07
3405 3636 1.062587 GAAATCCATCAACACGCCTCG 59.937 52.381 0.00 0.00 0.00 4.63
3432 3663 2.270352 TTCTTCTGACGGCAACCATT 57.730 45.000 0.00 0.00 0.00 3.16
3441 3672 3.049912 GACGGCAACCATTCTGTTTTTC 58.950 45.455 0.00 0.00 0.00 2.29
3445 3676 2.802247 GCAACCATTCTGTTTTTCCTGC 59.198 45.455 0.00 0.00 0.00 4.85
3449 3681 4.415596 ACCATTCTGTTTTTCCTGCCATA 58.584 39.130 0.00 0.00 0.00 2.74
3464 3696 4.454678 CTGCCATATGTTGCCTTTCTAGA 58.545 43.478 1.24 0.00 0.00 2.43
3467 3699 6.782986 TGCCATATGTTGCCTTTCTAGATAT 58.217 36.000 1.24 0.00 0.00 1.63
3474 3706 6.586344 TGTTGCCTTTCTAGATATCAAGGAG 58.414 40.000 20.56 5.89 38.52 3.69
3485 3717 8.170730 TCTAGATATCAAGGAGGCAATGTACTA 58.829 37.037 5.32 0.00 0.00 1.82
3486 3718 7.618019 AGATATCAAGGAGGCAATGTACTAA 57.382 36.000 5.32 0.00 0.00 2.24
3500 3733 4.757019 TGTACTAACTCCAACCACACAA 57.243 40.909 0.00 0.00 0.00 3.33
3532 3765 4.744795 ATGCTTAACTCCAGTCCACTAG 57.255 45.455 0.00 0.00 0.00 2.57
3534 3767 4.353777 TGCTTAACTCCAGTCCACTAGAT 58.646 43.478 0.00 0.00 0.00 1.98
3546 3779 9.601810 TCCAGTCCACTAGATATTGTACATATT 57.398 33.333 0.00 0.00 0.00 1.28
3603 3836 6.881067 AGGATATAGGCATTTGCTGATAGA 57.119 37.500 2.12 0.00 41.70 1.98
3606 3839 8.996655 AGGATATAGGCATTTGCTGATAGAATA 58.003 33.333 2.12 0.00 41.70 1.75
3618 3851 7.936496 TGCTGATAGAATATCAAACCAAACA 57.064 32.000 1.49 0.00 0.00 2.83
3626 3859 7.584987 AGAATATCAAACCAAACAGAAGAACG 58.415 34.615 0.00 0.00 0.00 3.95
3627 3860 4.568152 ATCAAACCAAACAGAAGAACGG 57.432 40.909 0.00 0.00 0.00 4.44
3658 3891 3.422417 ACGTCGTCACATTCCATCTAG 57.578 47.619 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.540914 CCAACGCTCCCTAAAAATCAATACTA 59.459 38.462 0.00 0.00 0.00 1.82
84 85 2.847234 TGTCCACCAACGCTCCCT 60.847 61.111 0.00 0.00 0.00 4.20
96 97 2.107378 TGGCCTATGTTTTCAGTGTCCA 59.893 45.455 3.32 0.00 0.00 4.02
158 159 2.564947 CAGTCTTGAGCCTCCTAACACT 59.435 50.000 0.00 0.00 0.00 3.55
172 173 3.069586 TGCCGGACCTAATATCAGTCTTG 59.930 47.826 5.05 0.00 0.00 3.02
177 178 3.469008 TGTTGCCGGACCTAATATCAG 57.531 47.619 5.05 0.00 0.00 2.90
233 234 6.214005 TCAGGATGCATATGAATCATCACCTA 59.786 38.462 22.75 1.16 38.58 3.08
241 242 6.807230 GCTCAAAATCAGGATGCATATGAATC 59.193 38.462 14.63 14.63 34.76 2.52
244 245 5.134661 TGCTCAAAATCAGGATGCATATGA 58.865 37.500 14.56 14.56 34.76 2.15
254 256 4.978083 AGCTACATTGCTCAAAATCAGG 57.022 40.909 0.00 0.00 39.34 3.86
280 282 8.458573 TGTTAGGTCTGACACAACATAATTTT 57.541 30.769 17.34 0.00 0.00 1.82
281 283 8.458573 TTGTTAGGTCTGACACAACATAATTT 57.541 30.769 20.19 0.00 0.00 1.82
282 284 8.514594 CATTGTTAGGTCTGACACAACATAATT 58.485 33.333 20.19 8.85 32.10 1.40
283 285 7.665559 ACATTGTTAGGTCTGACACAACATAAT 59.334 33.333 20.19 12.72 32.10 1.28
288 290 4.574828 ACACATTGTTAGGTCTGACACAAC 59.425 41.667 12.57 13.15 32.10 3.32
334 336 4.326826 TCATGAAGAGATTGTGGTTGTCC 58.673 43.478 0.00 0.00 0.00 4.02
342 344 6.054295 GGCTTAGTCATCATGAAGAGATTGT 58.946 40.000 0.00 0.00 0.00 2.71
343 345 5.177142 CGGCTTAGTCATCATGAAGAGATTG 59.823 44.000 0.00 0.00 0.00 2.67
344 346 5.295950 CGGCTTAGTCATCATGAAGAGATT 58.704 41.667 0.00 0.00 0.00 2.40
387 389 4.129380 TGAGTCTTGATCAAACACACTGG 58.871 43.478 9.88 0.00 0.00 4.00
430 432 2.906389 AGACTTCCCAACATCAGTAGCA 59.094 45.455 0.00 0.00 0.00 3.49
485 487 3.047280 GTGCCATTCCGTGTGCGA 61.047 61.111 0.00 0.00 41.33 5.10
498 500 6.521162 TGGGAAAAATTTAGAAGAAAGTGCC 58.479 36.000 0.00 0.00 0.00 5.01
519 521 2.946990 AGGCGGAATTAAATACGTTGGG 59.053 45.455 0.00 0.00 0.00 4.12
527 529 4.535526 AAGCAAACAGGCGGAATTAAAT 57.464 36.364 0.00 0.00 39.27 1.40
550 552 8.861086 ACACAAGGGAGTAGTATTGTATCTATG 58.139 37.037 0.00 0.00 34.26 2.23
551 553 8.861086 CACACAAGGGAGTAGTATTGTATCTAT 58.139 37.037 0.00 0.00 34.26 1.98
559 561 5.685075 GCATAGCACACAAGGGAGTAGTATT 60.685 44.000 0.00 0.00 0.00 1.89
561 563 3.132289 GCATAGCACACAAGGGAGTAGTA 59.868 47.826 0.00 0.00 0.00 1.82
587 589 0.251297 CCACCTCACCATGCTTGGAA 60.251 55.000 24.48 11.16 46.92 3.53
646 648 2.125512 CACAGGACGTAGCTGGCC 60.126 66.667 0.00 0.00 0.00 5.36
683 685 0.320374 TGGGTAGGTCTTTGCGACTG 59.680 55.000 0.00 0.00 42.44 3.51
685 687 1.019805 GCTGGGTAGGTCTTTGCGAC 61.020 60.000 0.00 0.00 42.07 5.19
691 693 0.044855 AGATGGGCTGGGTAGGTCTT 59.955 55.000 0.00 0.00 0.00 3.01
698 700 2.311070 TGCATGAGATGGGCTGGGT 61.311 57.895 0.00 0.00 0.00 4.51
739 741 1.078778 ATGCGTATTGTGGTCGGCA 60.079 52.632 0.00 0.00 0.00 5.69
783 785 1.628846 AGGGTACTGCCTGTTTAGGTG 59.371 52.381 0.00 0.00 46.41 4.00
870 872 5.545063 TCCTTGTGTGAGTACATGAGAAA 57.455 39.130 0.00 0.00 39.39 2.52
875 878 2.604914 GCGATCCTTGTGTGAGTACATG 59.395 50.000 0.00 0.00 39.39 3.21
937 940 5.916661 AGAGAACGAGCATTTAACTCCTA 57.083 39.130 0.00 0.00 0.00 2.94
956 959 5.171516 CGCGTAGTTGTAATGTGTGATAGAG 59.828 44.000 0.00 0.00 0.00 2.43
976 979 3.434319 CTGGATTTGCCTGCGCGT 61.434 61.111 8.43 0.00 38.08 6.01
981 984 1.830279 TCTCAAGCTGGATTTGCCTG 58.170 50.000 0.00 0.00 37.63 4.85
982 985 2.025605 TCATCTCAAGCTGGATTTGCCT 60.026 45.455 0.00 0.00 37.63 4.75
1021 1024 1.702886 CGAGTCCTTGCACTGTACAG 58.297 55.000 21.44 21.44 0.00 2.74
1095 1098 4.395231 GGTGGAATACCTTTTGTAGCAGAC 59.605 45.833 0.00 0.00 46.51 3.51
1104 1107 8.618033 ATGTTGTCATGTGGTGGAATACCTTTT 61.618 37.037 0.00 0.00 40.42 2.27
1113 1116 2.639347 AGAGATGTTGTCATGTGGTGGA 59.361 45.455 0.00 0.00 34.06 4.02
1116 1119 4.074970 GGAAAGAGATGTTGTCATGTGGT 58.925 43.478 0.00 0.00 34.06 4.16
1117 1120 4.155462 CAGGAAAGAGATGTTGTCATGTGG 59.845 45.833 0.00 0.00 34.06 4.17
1120 1123 5.954296 AACAGGAAAGAGATGTTGTCATG 57.046 39.130 0.00 0.00 35.89 3.07
1129 1132 5.185828 GGGCACAAAATAACAGGAAAGAGAT 59.814 40.000 0.00 0.00 0.00 2.75
1272 1421 2.499205 CGATAACTCCAGGCGGCA 59.501 61.111 13.08 0.00 0.00 5.69
1292 1441 4.942761 ATTGCAGAACAAACCTTCACAT 57.057 36.364 0.00 0.00 42.86 3.21
1309 1458 6.251376 CGCACCAGAAAATTAGTAGAAATTGC 59.749 38.462 0.00 0.00 0.00 3.56
1312 1461 7.448748 AACGCACCAGAAAATTAGTAGAAAT 57.551 32.000 0.00 0.00 0.00 2.17
1317 1466 7.733402 AGTAAAACGCACCAGAAAATTAGTA 57.267 32.000 0.00 0.00 0.00 1.82
1323 1481 7.646130 CAGATTTTAGTAAAACGCACCAGAAAA 59.354 33.333 10.20 0.00 32.37 2.29
1328 1486 6.811253 ATCAGATTTTAGTAAAACGCACCA 57.189 33.333 10.20 0.00 32.37 4.17
1329 1487 8.068380 GGATATCAGATTTTAGTAAAACGCACC 58.932 37.037 10.20 3.73 32.37 5.01
1344 1502 9.358406 TGCACTTATGAAAATGGATATCAGATT 57.642 29.630 4.83 0.00 0.00 2.40
1394 1552 2.226330 TGGATACGCACAGTTTTTGCT 58.774 42.857 0.00 0.00 37.87 3.91
1397 1555 5.401550 CATTGATGGATACGCACAGTTTTT 58.598 37.500 0.00 0.00 42.51 1.94
1411 1569 2.658285 GTTCAGATGGGCATTGATGGA 58.342 47.619 0.00 0.00 0.00 3.41
1418 1576 0.982852 TCCTCGGTTCAGATGGGCAT 60.983 55.000 0.00 0.00 0.00 4.40
1420 1578 0.533755 CATCCTCGGTTCAGATGGGC 60.534 60.000 0.00 0.00 34.94 5.36
1461 1619 2.969443 AACAAATTGAGAGTTCGCGG 57.031 45.000 6.13 0.00 0.00 6.46
1462 1620 2.401720 GCAAACAAATTGAGAGTTCGCG 59.598 45.455 0.00 0.00 41.85 5.87
1468 1626 5.045215 TCTGCTTTGCAAACAAATTGAGAG 58.955 37.500 8.05 0.00 44.54 3.20
1474 1632 4.141233 AGGTTCTGCTTTGCAAACAAAT 57.859 36.364 8.05 0.00 44.54 2.32
1475 1633 3.608316 AGGTTCTGCTTTGCAAACAAA 57.392 38.095 8.05 6.55 43.45 2.83
1581 1739 1.893137 AGGACGAGACACATACTTGCA 59.107 47.619 0.00 0.00 0.00 4.08
1601 1759 1.075374 CAGGGGTTTGTCTGGAATCCA 59.925 52.381 0.48 0.48 0.00 3.41
1628 1786 2.100879 GAGGGCACGTGACAACTCCT 62.101 60.000 25.47 10.64 0.00 3.69
1638 1796 3.168528 AGGTTGTGGAGGGCACGT 61.169 61.111 0.00 0.00 0.00 4.49
1686 1844 0.034198 TCGGTTCCATCAGCGTTCAA 59.966 50.000 0.00 0.00 38.78 2.69
1691 1849 0.596083 CTAGCTCGGTTCCATCAGCG 60.596 60.000 0.00 0.00 36.95 5.18
1722 1880 3.698539 TGAGGACACAAGAATTTTGCACA 59.301 39.130 0.00 0.00 0.00 4.57
1734 1892 8.839343 CAATATGTATGCTAAATGAGGACACAA 58.161 33.333 0.00 0.00 36.41 3.33
1767 1927 8.480643 AGTACGAAGAAGACTGAAAAATATGG 57.519 34.615 0.00 0.00 0.00 2.74
1779 1939 6.972722 AGGATGCTATTAGTACGAAGAAGAC 58.027 40.000 0.00 0.00 0.00 3.01
1787 1947 5.440234 AGTGTGAGGATGCTATTAGTACG 57.560 43.478 0.00 0.00 0.00 3.67
1802 1962 4.872664 AGTTCCTACGAAAGAAGTGTGAG 58.127 43.478 0.00 0.00 0.00 3.51
1841 2001 5.745227 ACGGTGATCTTGATAAATCTTGGT 58.255 37.500 0.00 0.00 0.00 3.67
1855 2015 3.118738 GGGTATGACAAAGACGGTGATCT 60.119 47.826 0.00 0.00 0.00 2.75
1864 2024 2.766263 AGCTGATCGGGTATGACAAAGA 59.234 45.455 3.92 0.00 0.00 2.52
1865 2025 3.126831 GAGCTGATCGGGTATGACAAAG 58.873 50.000 6.15 0.00 0.00 2.77
1934 2094 1.009829 AATCGATCTGAGCAAACCGC 58.990 50.000 0.00 0.00 42.91 5.68
1947 2107 1.670811 GGTTTCGGCATCACAATCGAT 59.329 47.619 0.00 0.00 0.00 3.59
1964 2124 4.903045 TCTTAAGAATGGGTTCTCGGTT 57.097 40.909 1.68 0.00 43.80 4.44
1990 2150 3.052082 CAGGCTCAAGTGGGTGCG 61.052 66.667 0.00 0.00 0.00 5.34
2010 2170 9.071221 GCGATGAATACAATATCTTACTGAGAG 57.929 37.037 0.00 0.00 37.93 3.20
2023 2183 4.639755 TGTGACATTGGCGATGAATACAAT 59.360 37.500 21.46 0.00 39.15 2.71
2042 2202 1.822371 TCGAGGAACATCGGAATGTGA 59.178 47.619 8.85 0.00 45.48 3.58
2076 2236 7.708752 TGAACATGGGAGTGAAAAATGTTAAAC 59.291 33.333 0.00 0.00 40.55 2.01
2089 2249 4.279169 ACAAACAGAATGAACATGGGAGTG 59.721 41.667 0.00 0.00 39.69 3.51
2090 2250 4.473444 ACAAACAGAATGAACATGGGAGT 58.527 39.130 0.00 0.00 39.69 3.85
2091 2251 5.458041 AACAAACAGAATGAACATGGGAG 57.542 39.130 0.00 0.00 39.69 4.30
2092 2252 5.867903 AAACAAACAGAATGAACATGGGA 57.132 34.783 0.00 0.00 39.69 4.37
2093 2253 6.423604 GGTAAAACAAACAGAATGAACATGGG 59.576 38.462 0.00 0.00 39.69 4.00
2096 2256 8.203485 ACATGGTAAAACAAACAGAATGAACAT 58.797 29.630 0.00 0.00 39.69 2.71
2097 2257 7.490725 CACATGGTAAAACAAACAGAATGAACA 59.509 33.333 0.00 0.00 39.69 3.18
2098 2258 7.042791 CCACATGGTAAAACAAACAGAATGAAC 60.043 37.037 0.00 0.00 39.69 3.18
2101 2261 6.768029 CCACATGGTAAAACAAACAGAATG 57.232 37.500 0.00 0.00 46.00 2.67
2124 2285 1.609208 AGTCTGGTTGCACATGGAAC 58.391 50.000 7.66 7.66 44.24 3.62
2126 2287 2.356022 CCATAGTCTGGTTGCACATGGA 60.356 50.000 0.00 0.00 40.49 3.41
2144 2305 2.303022 AGTCAGAATCCGACAACACCAT 59.697 45.455 0.00 0.00 35.77 3.55
2202 2363 8.539117 TGTTAGATCATACTTCAGAGAATCCA 57.461 34.615 0.00 0.00 33.66 3.41
2283 2444 9.342308 TGGAAAATCTACTTTTAGCATATCCAG 57.658 33.333 0.00 0.00 37.18 3.86
2307 2468 4.174009 ACTGTCAACGAAACGAGATATGG 58.826 43.478 0.00 0.00 0.00 2.74
2325 2486 2.368548 TGGTACAGCTGTGATGAACTGT 59.631 45.455 29.57 0.97 45.02 3.55
2338 2499 4.382320 TTCGGGCCGTGGTACAGC 62.382 66.667 27.32 0.00 41.80 4.40
2370 2531 8.492415 TTACTCTTAGCTACATGTCCCATATT 57.508 34.615 0.00 0.00 0.00 1.28
2388 2549 6.931840 GCGGATCAAGGAGATTAATTACTCTT 59.068 38.462 6.77 0.00 37.00 2.85
2397 2558 3.827302 GGTAGAGCGGATCAAGGAGATTA 59.173 47.826 0.00 0.00 37.00 1.75
2423 2584 1.293924 CGGAGGAGCTAGTGCATTTG 58.706 55.000 0.00 0.00 42.74 2.32
2446 2607 1.550524 TGCTGCTTCGTCTTGGTCTAT 59.449 47.619 0.00 0.00 0.00 1.98
2538 2699 1.739466 TCATGCTTCATTCGCCAGTTC 59.261 47.619 0.00 0.00 0.00 3.01
2585 2746 5.806654 TGCATGGCTCTATATGACTTACA 57.193 39.130 0.00 0.00 0.00 2.41
2596 2757 5.294734 TGAAGTTGATATGCATGGCTCTA 57.705 39.130 10.16 0.00 0.00 2.43
2597 2758 4.160642 TGAAGTTGATATGCATGGCTCT 57.839 40.909 10.16 0.00 0.00 4.09
2613 2774 4.062677 TGGTAAACTGCTACGTTGAAGT 57.937 40.909 4.65 4.65 0.00 3.01
2639 2822 2.229792 TCAGCGCTGAAACAAAAGGAT 58.770 42.857 36.62 0.00 36.53 3.24
2688 2895 0.970640 TTCTCCCCGTCGAATTGTCA 59.029 50.000 0.00 0.00 0.00 3.58
2693 2900 1.263356 TCAACTTCTCCCCGTCGAAT 58.737 50.000 0.00 0.00 0.00 3.34
2699 2906 2.038033 TGGTAACTTCAACTTCTCCCCG 59.962 50.000 0.00 0.00 37.61 5.73
2735 2942 6.501102 AGATGAGTGGATGATTAGATGTGGAT 59.499 38.462 0.00 0.00 0.00 3.41
2757 2965 7.738847 TGATGTGTACATGGAATCATACAGAT 58.261 34.615 0.00 0.00 33.90 2.90
2793 3003 2.184167 ACGTGTTCGGCCCACAAAG 61.184 57.895 10.69 7.81 41.85 2.77
2800 3011 1.005867 TAGGTTCACGTGTTCGGCC 60.006 57.895 16.51 11.25 41.85 6.13
2861 3072 3.052036 CAAGGCATCGTTCTTGGTTTTG 58.948 45.455 0.00 0.00 37.35 2.44
2957 3168 5.500234 CCCTAGTCATCAAAGTTGGAATCA 58.500 41.667 0.00 0.00 0.00 2.57
2964 3175 1.065418 CCCGCCCTAGTCATCAAAGTT 60.065 52.381 0.00 0.00 0.00 2.66
2992 3203 3.624777 ACTGTCATAAGGGAAATGCAGG 58.375 45.455 0.00 0.00 35.06 4.85
3010 3221 4.326826 TGGAGCTTGGTTTGATTAGACTG 58.673 43.478 0.00 0.00 0.00 3.51
3034 3245 4.250464 TCCCATTGATCAAACTACGACAC 58.750 43.478 13.09 0.00 0.00 3.67
3051 3262 8.002459 ACCCAAAATAAAACTACGATATCCCAT 58.998 33.333 0.00 0.00 0.00 4.00
3158 3370 5.956642 ACTGAACGTGTTTTTGGTGTAAAT 58.043 33.333 0.00 0.00 0.00 1.40
3172 3384 3.030652 GGCACCCAACTGAACGTG 58.969 61.111 0.00 0.00 0.00 4.49
3189 3401 6.707290 TCAGGATTTATATAACATCCGTGGG 58.293 40.000 19.81 14.71 41.38 4.61
3234 3447 1.621317 TGATGTCGCTGGTTAACTGGA 59.379 47.619 5.42 0.00 0.00 3.86
3236 3449 2.805671 TGTTGATGTCGCTGGTTAACTG 59.194 45.455 5.42 0.36 0.00 3.16
3238 3451 5.734855 ATATGTTGATGTCGCTGGTTAAC 57.265 39.130 0.00 0.00 0.00 2.01
3248 3461 7.502120 ACAAGCAAGGATATATGTTGATGTC 57.498 36.000 8.12 0.00 0.00 3.06
3259 3488 6.528537 TGCACATTTAACAAGCAAGGATAT 57.471 33.333 0.00 0.00 31.42 1.63
3261 3490 4.870123 TGCACATTTAACAAGCAAGGAT 57.130 36.364 0.00 0.00 31.42 3.24
3283 3512 9.747898 ATGGATAATAACAACCACTGAAAAGTA 57.252 29.630 0.00 0.00 35.19 2.24
3292 3521 6.751888 GCTGTGAAATGGATAATAACAACCAC 59.248 38.462 0.00 0.00 35.19 4.16
3317 3546 6.038356 GGGAAGATTTCACATATGCAAACTG 58.962 40.000 1.58 0.00 31.89 3.16
3319 3548 5.964758 TGGGAAGATTTCACATATGCAAAC 58.035 37.500 1.58 0.00 38.38 2.93
3334 3563 3.420893 TGCAGTTCGAAAATGGGAAGAT 58.579 40.909 0.00 0.00 0.00 2.40
3382 3613 2.749621 AGGCGTGTTGATGGATTTCTTC 59.250 45.455 0.00 0.00 0.00 2.87
3384 3615 2.359900 GAGGCGTGTTGATGGATTTCT 58.640 47.619 0.00 0.00 0.00 2.52
3414 3645 1.347707 AGAATGGTTGCCGTCAGAAGA 59.652 47.619 0.00 0.00 0.00 2.87
3416 3647 1.202758 ACAGAATGGTTGCCGTCAGAA 60.203 47.619 0.00 0.00 43.62 3.02
3417 3648 0.396435 ACAGAATGGTTGCCGTCAGA 59.604 50.000 0.00 0.00 43.62 3.27
3418 3649 1.238439 AACAGAATGGTTGCCGTCAG 58.762 50.000 0.00 0.00 43.62 3.51
3419 3650 3.412722 AACAGAATGGTTGCCGTCA 57.587 47.368 0.00 0.00 43.62 4.35
3432 3663 4.321899 GCAACATATGGCAGGAAAAACAGA 60.322 41.667 7.80 0.00 0.00 3.41
3445 3676 8.853077 TTGATATCTAGAAAGGCAACATATGG 57.147 34.615 7.80 0.00 41.41 2.74
3449 3681 7.141758 TCCTTGATATCTAGAAAGGCAACAT 57.858 36.000 14.78 0.00 39.27 2.71
3464 3696 7.380423 AGTTAGTACATTGCCTCCTTGATAT 57.620 36.000 0.00 0.00 0.00 1.63
3467 3699 4.081087 GGAGTTAGTACATTGCCTCCTTGA 60.081 45.833 0.00 0.00 36.41 3.02
3474 3706 3.439129 GTGGTTGGAGTTAGTACATTGCC 59.561 47.826 0.00 0.00 0.00 4.52
3485 3717 1.102978 GCTGTTGTGTGGTTGGAGTT 58.897 50.000 0.00 0.00 0.00 3.01
3486 3718 0.751643 GGCTGTTGTGTGGTTGGAGT 60.752 55.000 0.00 0.00 0.00 3.85
3500 3733 2.562738 GAGTTAAGCATTTTGGGGCTGT 59.437 45.455 0.00 0.00 40.93 4.40
3546 3779 7.069085 ACAACAGAGTTGGTGAACTTACTACTA 59.931 37.037 13.71 0.00 45.14 1.82
3603 3836 6.294508 CCCGTTCTTCTGTTTGGTTTGATATT 60.295 38.462 0.00 0.00 0.00 1.28
3606 3839 3.317993 CCCGTTCTTCTGTTTGGTTTGAT 59.682 43.478 0.00 0.00 0.00 2.57
3618 3851 6.381481 ACGTTTTAAAATTCCCGTTCTTCT 57.619 33.333 3.52 0.00 0.00 2.85
3626 3859 4.846509 TGTGACGACGTTTTAAAATTCCC 58.153 39.130 0.13 0.00 0.00 3.97
3627 3860 6.087159 GGAATGTGACGACGTTTTAAAATTCC 59.913 38.462 0.13 10.31 34.40 3.01
3658 3891 9.988350 CATTATGTGTGTACAAGACTTATTTCC 57.012 33.333 0.00 0.00 40.84 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.