Multiple sequence alignment - TraesCS2A01G512800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G512800 chr2A 100.000 2243 0 0 1 2243 737828707 737830949 0.000000e+00 4143.0
1 TraesCS2A01G512800 chr2A 87.423 970 63 21 722 1650 737644713 737645664 0.000000e+00 1061.0
2 TraesCS2A01G512800 chr2A 84.740 616 53 27 30 638 689785078 689785659 1.490000e-161 579.0
3 TraesCS2A01G512800 chr2A 97.133 279 8 0 1648 1926 756118425 756118147 2.610000e-129 472.0
4 TraesCS2A01G512800 chr2A 95.018 281 14 0 1644 1924 87539692 87539972 2.040000e-120 442.0
5 TraesCS2A01G512800 chr2A 88.688 221 19 6 1923 2140 16294922 16295139 4.750000e-67 265.0
6 TraesCS2A01G512800 chr2A 90.256 195 18 1 2050 2243 737645863 737646057 1.030000e-63 254.0
7 TraesCS2A01G512800 chr2D 83.980 980 59 33 639 1568 606132452 606133383 0.000000e+00 850.0
8 TraesCS2A01G512800 chr2D 96.774 31 1 0 823 853 606625393 606625423 4.000000e-03 52.8
9 TraesCS2A01G512800 chr5A 87.771 646 42 14 1 638 550113590 550114206 0.000000e+00 721.0
10 TraesCS2A01G512800 chr5A 96.403 278 10 0 1650 1927 585492519 585492242 2.030000e-125 459.0
11 TraesCS2A01G512800 chr5A 96.057 279 11 0 1648 1926 328662523 328662801 2.630000e-124 455.0
12 TraesCS2A01G512800 chr5A 88.235 119 12 2 522 639 2091392 2091275 8.350000e-30 141.0
13 TraesCS2A01G512800 chr2B 83.133 830 52 35 780 1568 737050041 737050823 0.000000e+00 676.0
14 TraesCS2A01G512800 chr2B 83.267 502 48 18 142 638 121553016 121552546 1.590000e-116 429.0
15 TraesCS2A01G512800 chr2B 90.000 220 18 4 1923 2140 777966527 777966310 4.720000e-72 281.0
16 TraesCS2A01G512800 chr2B 90.000 220 18 4 1923 2140 778028215 778027998 4.720000e-72 281.0
17 TraesCS2A01G512800 chr2B 86.325 234 31 1 964 1196 737449854 737450087 1.030000e-63 254.0
18 TraesCS2A01G512800 chr6B 85.759 646 52 20 1 638 61208812 61208199 0.000000e+00 647.0
19 TraesCS2A01G512800 chr6A 89.147 516 44 10 1 509 101892091 101891581 1.130000e-177 632.0
20 TraesCS2A01G512800 chr6A 84.985 646 57 19 1 638 472352480 472353093 8.800000e-174 619.0
21 TraesCS2A01G512800 chr6A 88.983 118 11 2 522 638 2795179 2795063 6.460000e-31 145.0
22 TraesCS2A01G512800 chr6A 88.983 118 11 2 522 638 60544231 60544115 6.460000e-31 145.0
23 TraesCS2A01G512800 chr7A 84.675 646 60 19 1 638 337922150 337922764 1.900000e-170 608.0
24 TraesCS2A01G512800 chr7A 88.983 118 11 2 522 638 216514493 216514377 6.460000e-31 145.0
25 TraesCS2A01G512800 chr5D 87.984 516 49 12 1 509 325899444 325898935 4.120000e-167 597.0
26 TraesCS2A01G512800 chr5D 87.814 517 51 9 1 510 487471483 487471994 1.480000e-166 595.0
27 TraesCS2A01G512800 chr7D 88.687 495 47 8 19 509 8336738 8337227 1.480000e-166 595.0
28 TraesCS2A01G512800 chr7D 83.926 647 63 21 1 638 600976081 600975467 4.150000e-162 580.0
29 TraesCS2A01G512800 chr7D 82.524 103 17 1 2064 2166 43693540 43693439 3.070000e-14 89.8
30 TraesCS2A01G512800 chr4A 96.057 279 11 0 1648 1926 284950056 284950334 2.630000e-124 455.0
31 TraesCS2A01G512800 chr4A 95.341 279 13 0 1647 1925 24512543 24512265 5.680000e-121 444.0
32 TraesCS2A01G512800 chr4A 88.983 118 11 2 522 638 34558717 34558833 6.460000e-31 145.0
33 TraesCS2A01G512800 chr4A 88.793 116 11 2 524 638 629395652 629395766 8.350000e-30 141.0
34 TraesCS2A01G512800 chr3A 95.714 280 12 0 1647 1926 511872565 511872286 3.400000e-123 451.0
35 TraesCS2A01G512800 chr3A 95.018 281 14 0 1646 1926 44691504 44691784 2.040000e-120 442.0
36 TraesCS2A01G512800 chr3A 94.982 279 14 0 1648 1926 115158834 115159112 2.640000e-119 438.0
37 TraesCS2A01G512800 chr1B 88.636 220 22 3 1923 2140 629179960 629180178 4.750000e-67 265.0
38 TraesCS2A01G512800 chr1B 89.796 196 18 2 2050 2243 629180124 629180319 1.330000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G512800 chr2A 737828707 737830949 2242 False 4143.0 4143 100.0000 1 2243 1 chr2A.!!$F4 2242
1 TraesCS2A01G512800 chr2A 737644713 737646057 1344 False 657.5 1061 88.8395 722 2243 2 chr2A.!!$F5 1521
2 TraesCS2A01G512800 chr2A 689785078 689785659 581 False 579.0 579 84.7400 30 638 1 chr2A.!!$F3 608
3 TraesCS2A01G512800 chr2D 606132452 606133383 931 False 850.0 850 83.9800 639 1568 1 chr2D.!!$F1 929
4 TraesCS2A01G512800 chr5A 550113590 550114206 616 False 721.0 721 87.7710 1 638 1 chr5A.!!$F2 637
5 TraesCS2A01G512800 chr2B 737050041 737050823 782 False 676.0 676 83.1330 780 1568 1 chr2B.!!$F1 788
6 TraesCS2A01G512800 chr6B 61208199 61208812 613 True 647.0 647 85.7590 1 638 1 chr6B.!!$R1 637
7 TraesCS2A01G512800 chr6A 101891581 101892091 510 True 632.0 632 89.1470 1 509 1 chr6A.!!$R3 508
8 TraesCS2A01G512800 chr6A 472352480 472353093 613 False 619.0 619 84.9850 1 638 1 chr6A.!!$F1 637
9 TraesCS2A01G512800 chr7A 337922150 337922764 614 False 608.0 608 84.6750 1 638 1 chr7A.!!$F1 637
10 TraesCS2A01G512800 chr5D 325898935 325899444 509 True 597.0 597 87.9840 1 509 1 chr5D.!!$R1 508
11 TraesCS2A01G512800 chr5D 487471483 487471994 511 False 595.0 595 87.8140 1 510 1 chr5D.!!$F1 509
12 TraesCS2A01G512800 chr7D 600975467 600976081 614 True 580.0 580 83.9260 1 638 1 chr7D.!!$R2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 726 0.036199 CGACCGGGTGTATTTCCCAA 60.036 55.0 3.3 0.0 44.81 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2100 0.108804 ACATCGACGGTGGTCATCAC 60.109 55.0 13.58 0.0 43.61 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 160 0.978151 TTGGTTAGGACGCCTGCTTA 59.022 50.000 8.44 0.00 34.61 3.09
178 182 1.962306 GCAACAGGTCGCCGGTTTA 60.962 57.895 1.90 0.00 39.71 2.01
208 214 5.297547 GGTTTCCCTTTTTCCTGATTTGAC 58.702 41.667 0.00 0.00 0.00 3.18
297 303 1.478510 CTGGTCGAGTGGCTGTCTATT 59.521 52.381 0.00 0.00 0.00 1.73
311 317 2.128035 GTCTATTCTGGGCGAATCACG 58.872 52.381 0.00 0.00 41.36 4.35
331 340 2.450476 GGCAGGTCATGGTTCAAATCT 58.550 47.619 0.00 0.00 0.00 2.40
479 491 0.037326 CGTGGCACGCATAGGGATAT 60.037 55.000 28.30 0.00 39.91 1.63
502 514 4.161565 TGATTGGATACGGTAGAAAGCACT 59.838 41.667 0.00 0.00 42.51 4.40
510 522 8.684520 GGATACGGTAGAAAGCACTGTATATAT 58.315 37.037 6.88 0.00 44.64 0.86
511 523 9.719279 GATACGGTAGAAAGCACTGTATATATC 57.281 37.037 6.88 0.00 44.64 1.63
512 524 6.921914 ACGGTAGAAAGCACTGTATATATCC 58.078 40.000 0.00 0.00 33.73 2.59
513 525 6.071503 ACGGTAGAAAGCACTGTATATATCCC 60.072 42.308 0.00 0.00 33.73 3.85
514 526 6.331061 GGTAGAAAGCACTGTATATATCCCG 58.669 44.000 0.00 0.00 0.00 5.14
515 527 6.152323 GGTAGAAAGCACTGTATATATCCCGA 59.848 42.308 0.00 0.00 0.00 5.14
516 528 6.665992 AGAAAGCACTGTATATATCCCGAA 57.334 37.500 0.00 0.00 0.00 4.30
517 529 7.062749 AGAAAGCACTGTATATATCCCGAAA 57.937 36.000 0.00 0.00 0.00 3.46
518 530 7.506114 AGAAAGCACTGTATATATCCCGAAAA 58.494 34.615 0.00 0.00 0.00 2.29
519 531 7.990886 AGAAAGCACTGTATATATCCCGAAAAA 59.009 33.333 0.00 0.00 0.00 1.94
559 571 3.071892 ACAAGAGGACGGGTTAAATGACA 59.928 43.478 0.00 0.00 0.00 3.58
564 576 5.009310 AGAGGACGGGTTAAATGACAAAAAC 59.991 40.000 0.00 0.00 0.00 2.43
567 579 5.326200 ACGGGTTAAATGACAAAAACACA 57.674 34.783 0.00 0.00 0.00 3.72
568 580 5.908341 ACGGGTTAAATGACAAAAACACAT 58.092 33.333 0.00 0.00 0.00 3.21
569 581 7.040473 ACGGGTTAAATGACAAAAACACATA 57.960 32.000 0.00 0.00 0.00 2.29
570 582 7.662897 ACGGGTTAAATGACAAAAACACATAT 58.337 30.769 0.00 0.00 0.00 1.78
614 626 1.267632 TGAACGTTGCGTGCAAGTTAC 60.268 47.619 5.00 8.94 42.88 2.50
645 657 7.834881 TCTAGTGTATTTATCTCCCGTGAAT 57.165 36.000 0.00 0.00 0.00 2.57
655 667 8.481492 TTTATCTCCCGTGAATTATACACCTA 57.519 34.615 0.00 0.00 35.17 3.08
663 675 8.606602 CCCGTGAATTATACACCTAAAAGTAAC 58.393 37.037 0.00 0.00 35.17 2.50
676 688 8.166706 CACCTAAAAGTAACTAGTAATTGCGTG 58.833 37.037 0.00 0.00 0.00 5.34
702 714 0.878416 GAGATCTCAGATCGACCGGG 59.122 60.000 18.11 0.00 0.00 5.73
703 715 0.183971 AGATCTCAGATCGACCGGGT 59.816 55.000 9.11 0.00 0.00 5.28
705 717 0.395862 ATCTCAGATCGACCGGGTGT 60.396 55.000 3.30 0.00 0.00 4.16
706 718 0.253894 TCTCAGATCGACCGGGTGTA 59.746 55.000 3.30 0.00 0.00 2.90
707 719 1.133884 TCTCAGATCGACCGGGTGTAT 60.134 52.381 3.30 0.00 0.00 2.29
708 720 1.681793 CTCAGATCGACCGGGTGTATT 59.318 52.381 3.30 0.00 0.00 1.89
709 721 2.100916 CTCAGATCGACCGGGTGTATTT 59.899 50.000 3.30 0.00 0.00 1.40
710 722 2.100252 TCAGATCGACCGGGTGTATTTC 59.900 50.000 3.30 0.00 0.00 2.17
711 723 1.411612 AGATCGACCGGGTGTATTTCC 59.588 52.381 3.30 0.00 0.00 3.13
712 724 0.466963 ATCGACCGGGTGTATTTCCC 59.533 55.000 3.30 0.00 41.41 3.97
713 725 0.903924 TCGACCGGGTGTATTTCCCA 60.904 55.000 3.30 0.00 44.81 4.37
714 726 0.036199 CGACCGGGTGTATTTCCCAA 60.036 55.000 3.30 0.00 44.81 4.12
715 727 1.407712 CGACCGGGTGTATTTCCCAAT 60.408 52.381 3.30 0.00 44.81 3.16
716 728 2.730382 GACCGGGTGTATTTCCCAATT 58.270 47.619 3.30 0.00 44.81 2.32
717 729 2.686405 GACCGGGTGTATTTCCCAATTC 59.314 50.000 3.30 0.00 44.81 2.17
718 730 2.028876 CCGGGTGTATTTCCCAATTCC 58.971 52.381 0.00 0.00 44.81 3.01
719 731 1.673920 CGGGTGTATTTCCCAATTCCG 59.326 52.381 1.91 0.00 44.81 4.30
737 749 1.491670 CGCCCTCGTCACAATCATAG 58.508 55.000 0.00 0.00 0.00 2.23
754 766 1.583556 TAGCTCTTGCCCAGATCCAA 58.416 50.000 0.00 0.00 40.80 3.53
790 802 1.611977 TCCGTCTTCACTCACAACGAT 59.388 47.619 0.00 0.00 35.45 3.73
818 830 9.524106 ACGACGATAATAACAACTCATTCATTA 57.476 29.630 0.00 0.00 0.00 1.90
947 964 1.566018 CCTCACCGTGGCGAAAGAAC 61.566 60.000 0.00 0.00 0.00 3.01
948 965 0.878523 CTCACCGTGGCGAAAGAACA 60.879 55.000 0.00 0.00 0.00 3.18
949 966 0.462225 TCACCGTGGCGAAAGAACAA 60.462 50.000 0.00 0.00 0.00 2.83
952 969 0.378962 CCGTGGCGAAAGAACAACAA 59.621 50.000 0.00 0.00 0.00 2.83
958 975 2.543031 GGCGAAAGAACAACAAAGGACC 60.543 50.000 0.00 0.00 0.00 4.46
965 982 3.714798 AGAACAACAAAGGACCTGGAGTA 59.285 43.478 0.00 0.00 0.00 2.59
1067 1091 3.681835 GGTGCTCCACGTCTCGGT 61.682 66.667 0.00 0.00 34.83 4.69
1489 1548 5.554636 GCGATCAGCGATTTATTCTTATGG 58.445 41.667 0.00 0.00 44.57 2.74
1561 1633 1.194547 CCGACAATCGACACTGGTTTG 59.805 52.381 0.00 0.00 43.74 2.93
1562 1634 1.194547 CGACAATCGACACTGGTTTGG 59.805 52.381 0.00 0.00 43.74 3.28
1568 1640 4.819105 ATCGACACTGGTTTGGAGATTA 57.181 40.909 0.00 0.00 0.00 1.75
1570 1642 3.056107 TCGACACTGGTTTGGAGATTAGG 60.056 47.826 0.00 0.00 0.00 2.69
1587 1659 1.971481 AGGAAACGTTTAAAGCCGGT 58.029 45.000 14.65 0.00 0.00 5.28
1589 1661 1.603326 GGAAACGTTTAAAGCCGGTCA 59.397 47.619 14.65 0.00 0.00 4.02
1605 1677 1.072505 TCAACCGGCTGAAACTCCC 59.927 57.895 4.72 0.00 0.00 4.30
1608 1680 3.646715 CCGGCTGAAACTCCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
1619 1691 0.178861 ACTCCCCCAGTCAAGTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
1624 1696 0.679002 CCCAGTCAAGTCCATGCTGG 60.679 60.000 6.36 6.36 40.87 4.85
1642 1714 2.440147 CAACAGGCCCACCCATCA 59.560 61.111 0.00 0.00 36.11 3.07
1643 1715 1.978617 CAACAGGCCCACCCATCAC 60.979 63.158 0.00 0.00 36.11 3.06
1645 1717 4.802051 CAGGCCCACCCATCACCG 62.802 72.222 0.00 0.00 36.11 4.94
1648 1720 4.740822 GCCCACCCATCACCGCTT 62.741 66.667 0.00 0.00 0.00 4.68
1649 1721 2.994699 CCCACCCATCACCGCTTA 59.005 61.111 0.00 0.00 0.00 3.09
1650 1722 1.153168 CCCACCCATCACCGCTTAG 60.153 63.158 0.00 0.00 0.00 2.18
1651 1723 1.622607 CCCACCCATCACCGCTTAGA 61.623 60.000 0.00 0.00 0.00 2.10
1652 1724 0.462047 CCACCCATCACCGCTTAGAC 60.462 60.000 0.00 0.00 0.00 2.59
1653 1725 0.537188 CACCCATCACCGCTTAGACT 59.463 55.000 0.00 0.00 0.00 3.24
1654 1726 1.754803 CACCCATCACCGCTTAGACTA 59.245 52.381 0.00 0.00 0.00 2.59
1655 1727 2.032620 ACCCATCACCGCTTAGACTAG 58.967 52.381 0.00 0.00 0.00 2.57
1656 1728 1.269831 CCCATCACCGCTTAGACTAGC 60.270 57.143 0.00 0.00 37.80 3.42
1657 1729 1.269831 CCATCACCGCTTAGACTAGCC 60.270 57.143 0.00 0.00 37.90 3.93
1658 1730 1.409064 CATCACCGCTTAGACTAGCCA 59.591 52.381 0.00 0.00 37.90 4.75
1659 1731 0.815734 TCACCGCTTAGACTAGCCAC 59.184 55.000 0.00 0.00 37.90 5.01
1660 1732 0.530744 CACCGCTTAGACTAGCCACA 59.469 55.000 0.00 0.00 37.90 4.17
1661 1733 1.067142 CACCGCTTAGACTAGCCACAA 60.067 52.381 0.00 0.00 37.90 3.33
1662 1734 1.831736 ACCGCTTAGACTAGCCACAAT 59.168 47.619 0.00 0.00 37.90 2.71
1663 1735 2.205074 CCGCTTAGACTAGCCACAATG 58.795 52.381 0.00 0.00 37.90 2.82
1664 1736 2.205074 CGCTTAGACTAGCCACAATGG 58.795 52.381 0.00 0.00 41.55 3.16
1665 1737 2.565841 GCTTAGACTAGCCACAATGGG 58.434 52.381 0.00 0.00 38.19 4.00
1666 1738 2.170607 GCTTAGACTAGCCACAATGGGA 59.829 50.000 0.00 0.00 38.19 4.37
1667 1739 3.742640 GCTTAGACTAGCCACAATGGGAG 60.743 52.174 0.00 0.00 38.19 4.30
1668 1740 1.958288 AGACTAGCCACAATGGGAGT 58.042 50.000 0.00 0.00 38.19 3.85
1669 1741 3.116096 AGACTAGCCACAATGGGAGTA 57.884 47.619 0.00 0.00 38.19 2.59
1670 1742 3.450904 AGACTAGCCACAATGGGAGTAA 58.549 45.455 0.00 0.00 38.19 2.24
1671 1743 4.040755 AGACTAGCCACAATGGGAGTAAT 58.959 43.478 0.00 0.00 38.19 1.89
1672 1744 4.475016 AGACTAGCCACAATGGGAGTAATT 59.525 41.667 0.00 0.00 38.19 1.40
1673 1745 5.044846 AGACTAGCCACAATGGGAGTAATTT 60.045 40.000 0.00 0.00 38.19 1.82
1674 1746 5.193679 ACTAGCCACAATGGGAGTAATTTC 58.806 41.667 0.00 0.00 38.19 2.17
1675 1747 4.046286 AGCCACAATGGGAGTAATTTCA 57.954 40.909 0.00 0.00 38.19 2.69
1676 1748 4.019174 AGCCACAATGGGAGTAATTTCAG 58.981 43.478 0.00 0.00 38.19 3.02
1677 1749 3.429410 GCCACAATGGGAGTAATTTCAGC 60.429 47.826 0.00 0.00 38.19 4.26
1678 1750 3.763360 CCACAATGGGAGTAATTTCAGCA 59.237 43.478 0.00 0.00 32.67 4.41
1679 1751 4.142315 CCACAATGGGAGTAATTTCAGCAG 60.142 45.833 0.00 0.00 32.67 4.24
1680 1752 4.460382 CACAATGGGAGTAATTTCAGCAGT 59.540 41.667 0.00 0.00 0.00 4.40
1681 1753 5.647658 CACAATGGGAGTAATTTCAGCAGTA 59.352 40.000 0.00 0.00 0.00 2.74
1682 1754 6.150976 CACAATGGGAGTAATTTCAGCAGTAA 59.849 38.462 0.00 0.00 0.00 2.24
1683 1755 6.151144 ACAATGGGAGTAATTTCAGCAGTAAC 59.849 38.462 0.00 0.00 0.00 2.50
1684 1756 5.235850 TGGGAGTAATTTCAGCAGTAACA 57.764 39.130 0.00 0.00 0.00 2.41
1685 1757 5.815581 TGGGAGTAATTTCAGCAGTAACAT 58.184 37.500 0.00 0.00 0.00 2.71
1686 1758 5.880332 TGGGAGTAATTTCAGCAGTAACATC 59.120 40.000 0.00 0.00 0.00 3.06
1687 1759 5.880332 GGGAGTAATTTCAGCAGTAACATCA 59.120 40.000 0.00 0.00 0.00 3.07
1688 1760 6.374333 GGGAGTAATTTCAGCAGTAACATCAA 59.626 38.462 0.00 0.00 0.00 2.57
1689 1761 7.414540 GGGAGTAATTTCAGCAGTAACATCAAG 60.415 40.741 0.00 0.00 0.00 3.02
1690 1762 7.119846 GGAGTAATTTCAGCAGTAACATCAAGT 59.880 37.037 0.00 0.00 0.00 3.16
1691 1763 8.034058 AGTAATTTCAGCAGTAACATCAAGTC 57.966 34.615 0.00 0.00 0.00 3.01
1692 1764 5.886960 ATTTCAGCAGTAACATCAAGTCC 57.113 39.130 0.00 0.00 0.00 3.85
1693 1765 4.350368 TTCAGCAGTAACATCAAGTCCA 57.650 40.909 0.00 0.00 0.00 4.02
1694 1766 4.350368 TCAGCAGTAACATCAAGTCCAA 57.650 40.909 0.00 0.00 0.00 3.53
1695 1767 4.065088 TCAGCAGTAACATCAAGTCCAAC 58.935 43.478 0.00 0.00 0.00 3.77
1696 1768 4.067896 CAGCAGTAACATCAAGTCCAACT 58.932 43.478 0.00 0.00 0.00 3.16
1697 1769 4.153117 CAGCAGTAACATCAAGTCCAACTC 59.847 45.833 0.00 0.00 0.00 3.01
1698 1770 4.065088 GCAGTAACATCAAGTCCAACTCA 58.935 43.478 0.00 0.00 0.00 3.41
1699 1771 4.153117 GCAGTAACATCAAGTCCAACTCAG 59.847 45.833 0.00 0.00 0.00 3.35
1700 1772 4.153117 CAGTAACATCAAGTCCAACTCAGC 59.847 45.833 0.00 0.00 0.00 4.26
1701 1773 2.936919 ACATCAAGTCCAACTCAGCA 57.063 45.000 0.00 0.00 0.00 4.41
1702 1774 3.213206 ACATCAAGTCCAACTCAGCAA 57.787 42.857 0.00 0.00 0.00 3.91
1703 1775 3.554934 ACATCAAGTCCAACTCAGCAAA 58.445 40.909 0.00 0.00 0.00 3.68
1704 1776 4.147321 ACATCAAGTCCAACTCAGCAAAT 58.853 39.130 0.00 0.00 0.00 2.32
1705 1777 4.586001 ACATCAAGTCCAACTCAGCAAATT 59.414 37.500 0.00 0.00 0.00 1.82
1706 1778 5.069516 ACATCAAGTCCAACTCAGCAAATTT 59.930 36.000 0.00 0.00 0.00 1.82
1707 1779 4.935702 TCAAGTCCAACTCAGCAAATTTG 58.064 39.130 14.03 14.03 0.00 2.32
1723 1795 6.102006 CAAATTTGCTTATGTGGCAATGAG 57.898 37.500 5.01 0.00 46.81 2.90
1724 1796 5.410355 AATTTGCTTATGTGGCAATGAGT 57.590 34.783 2.01 0.00 46.81 3.41
1725 1797 4.870123 TTTGCTTATGTGGCAATGAGTT 57.130 36.364 2.01 0.00 46.81 3.01
1726 1798 5.973899 TTTGCTTATGTGGCAATGAGTTA 57.026 34.783 2.01 0.00 46.81 2.24
1727 1799 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
1728 1800 5.309323 TGCTTATGTGGCAATGAGTTAAC 57.691 39.130 0.00 0.00 36.71 2.01
1729 1801 4.142708 TGCTTATGTGGCAATGAGTTAACG 60.143 41.667 0.00 0.00 36.71 3.18
1730 1802 4.094294 GCTTATGTGGCAATGAGTTAACGA 59.906 41.667 0.00 0.00 0.00 3.85
1731 1803 5.727791 GCTTATGTGGCAATGAGTTAACGAG 60.728 44.000 0.00 0.00 0.00 4.18
1732 1804 2.422597 TGTGGCAATGAGTTAACGAGG 58.577 47.619 0.00 0.00 0.00 4.63
1733 1805 2.037902 TGTGGCAATGAGTTAACGAGGA 59.962 45.455 0.00 0.00 0.00 3.71
1734 1806 2.673368 GTGGCAATGAGTTAACGAGGAG 59.327 50.000 0.00 0.00 0.00 3.69
1735 1807 2.565391 TGGCAATGAGTTAACGAGGAGA 59.435 45.455 0.00 0.00 0.00 3.71
1736 1808 3.190874 GGCAATGAGTTAACGAGGAGAG 58.809 50.000 0.00 0.00 0.00 3.20
1737 1809 3.119101 GGCAATGAGTTAACGAGGAGAGA 60.119 47.826 0.00 0.00 0.00 3.10
1738 1810 4.109050 GCAATGAGTTAACGAGGAGAGAG 58.891 47.826 0.00 0.00 0.00 3.20
1739 1811 4.677584 CAATGAGTTAACGAGGAGAGAGG 58.322 47.826 0.00 0.00 0.00 3.69
1740 1812 3.436577 TGAGTTAACGAGGAGAGAGGT 57.563 47.619 0.00 0.00 0.00 3.85
1741 1813 4.564782 TGAGTTAACGAGGAGAGAGGTA 57.435 45.455 0.00 0.00 0.00 3.08
1742 1814 4.515361 TGAGTTAACGAGGAGAGAGGTAG 58.485 47.826 0.00 0.00 0.00 3.18
1743 1815 4.019501 TGAGTTAACGAGGAGAGAGGTAGT 60.020 45.833 0.00 0.00 0.00 2.73
1744 1816 5.188555 TGAGTTAACGAGGAGAGAGGTAGTA 59.811 44.000 0.00 0.00 0.00 1.82
1745 1817 5.673514 AGTTAACGAGGAGAGAGGTAGTAG 58.326 45.833 0.00 0.00 0.00 2.57
1746 1818 5.189539 AGTTAACGAGGAGAGAGGTAGTAGT 59.810 44.000 0.00 0.00 0.00 2.73
1747 1819 6.382570 AGTTAACGAGGAGAGAGGTAGTAGTA 59.617 42.308 0.00 0.00 0.00 1.82
1748 1820 4.942761 ACGAGGAGAGAGGTAGTAGTAG 57.057 50.000 0.00 0.00 0.00 2.57
1749 1821 4.289245 ACGAGGAGAGAGGTAGTAGTAGT 58.711 47.826 0.00 0.00 0.00 2.73
1750 1822 5.454062 ACGAGGAGAGAGGTAGTAGTAGTA 58.546 45.833 0.00 0.00 0.00 1.82
1751 1823 5.896678 ACGAGGAGAGAGGTAGTAGTAGTAA 59.103 44.000 0.00 0.00 0.00 2.24
1752 1824 6.183360 ACGAGGAGAGAGGTAGTAGTAGTAAC 60.183 46.154 0.00 0.00 0.00 2.50
1753 1825 6.040842 CGAGGAGAGAGGTAGTAGTAGTAACT 59.959 46.154 1.98 1.98 39.91 2.24
1754 1826 7.417797 CGAGGAGAGAGGTAGTAGTAGTAACTT 60.418 44.444 4.04 0.00 37.15 2.66
1755 1827 8.852671 AGGAGAGAGGTAGTAGTAGTAACTTA 57.147 38.462 4.04 0.00 37.15 2.24
1756 1828 8.927411 AGGAGAGAGGTAGTAGTAGTAACTTAG 58.073 40.741 4.04 0.00 37.15 2.18
1757 1829 7.657354 GGAGAGAGGTAGTAGTAGTAACTTAGC 59.343 44.444 4.04 0.00 37.15 3.09
1758 1830 8.322905 AGAGAGGTAGTAGTAGTAACTTAGCT 57.677 38.462 4.04 0.00 37.15 3.32
1759 1831 9.432982 AGAGAGGTAGTAGTAGTAACTTAGCTA 57.567 37.037 4.04 0.00 37.15 3.32
1760 1832 9.696917 GAGAGGTAGTAGTAGTAACTTAGCTAG 57.303 40.741 4.04 0.00 37.15 3.42
1761 1833 9.212593 AGAGGTAGTAGTAGTAACTTAGCTAGT 57.787 37.037 4.04 0.00 39.32 2.57
1774 1846 6.764308 ACTTAGCTAGTTACCGTAACATCA 57.236 37.500 20.83 7.08 41.07 3.07
1775 1847 6.558909 ACTTAGCTAGTTACCGTAACATCAC 58.441 40.000 20.83 9.14 41.07 3.06
1776 1848 6.151648 ACTTAGCTAGTTACCGTAACATCACA 59.848 38.462 20.83 3.34 41.07 3.58
1777 1849 5.593679 AGCTAGTTACCGTAACATCACAT 57.406 39.130 20.83 4.45 41.07 3.21
1778 1850 5.348986 AGCTAGTTACCGTAACATCACATG 58.651 41.667 20.83 0.00 41.07 3.21
1780 1852 5.231568 GCTAGTTACCGTAACATCACATGTC 59.768 44.000 20.83 0.00 44.07 3.06
1781 1853 4.501071 AGTTACCGTAACATCACATGTCC 58.499 43.478 20.83 0.00 44.07 4.02
1782 1854 2.396590 ACCGTAACATCACATGTCCC 57.603 50.000 0.00 0.00 44.07 4.46
1783 1855 1.626321 ACCGTAACATCACATGTCCCA 59.374 47.619 0.00 0.00 44.07 4.37
1784 1856 2.039216 ACCGTAACATCACATGTCCCAA 59.961 45.455 0.00 0.00 44.07 4.12
1785 1857 3.278574 CCGTAACATCACATGTCCCAAT 58.721 45.455 0.00 0.00 44.07 3.16
1786 1858 3.065233 CCGTAACATCACATGTCCCAATG 59.935 47.826 0.00 0.45 44.07 2.82
1787 1859 3.487376 CGTAACATCACATGTCCCAATGC 60.487 47.826 0.00 0.00 44.07 3.56
1788 1860 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
1789 1861 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
1790 1862 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
1791 1863 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
1792 1864 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
1793 1865 4.922471 TCACATGTCCCAATGCAATATG 57.078 40.909 0.00 0.00 0.00 1.78
1794 1866 4.534797 TCACATGTCCCAATGCAATATGA 58.465 39.130 0.00 0.00 0.00 2.15
1795 1867 4.581409 TCACATGTCCCAATGCAATATGAG 59.419 41.667 0.00 0.00 0.00 2.90
1796 1868 4.340097 CACATGTCCCAATGCAATATGAGT 59.660 41.667 0.00 0.00 0.00 3.41
1797 1869 4.581824 ACATGTCCCAATGCAATATGAGTC 59.418 41.667 0.00 0.00 0.00 3.36
1798 1870 4.508551 TGTCCCAATGCAATATGAGTCT 57.491 40.909 0.00 0.00 0.00 3.24
1799 1871 5.628797 TGTCCCAATGCAATATGAGTCTA 57.371 39.130 0.00 0.00 0.00 2.59
1800 1872 6.191657 TGTCCCAATGCAATATGAGTCTAT 57.808 37.500 0.00 0.00 0.00 1.98
1801 1873 7.315066 TGTCCCAATGCAATATGAGTCTATA 57.685 36.000 0.00 0.00 0.00 1.31
1802 1874 7.744733 TGTCCCAATGCAATATGAGTCTATAA 58.255 34.615 0.00 0.00 0.00 0.98
1803 1875 7.661437 TGTCCCAATGCAATATGAGTCTATAAC 59.339 37.037 0.00 0.00 0.00 1.89
1804 1876 7.119846 GTCCCAATGCAATATGAGTCTATAACC 59.880 40.741 0.00 0.00 0.00 2.85
1805 1877 7.017551 TCCCAATGCAATATGAGTCTATAACCT 59.982 37.037 0.00 0.00 0.00 3.50
1806 1878 8.321353 CCCAATGCAATATGAGTCTATAACCTA 58.679 37.037 0.00 0.00 0.00 3.08
1807 1879 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
1826 1898 8.469309 AACCTAATAAATGAAGCTATGCATGT 57.531 30.769 10.16 0.00 0.00 3.21
1827 1899 8.469309 ACCTAATAAATGAAGCTATGCATGTT 57.531 30.769 10.16 0.00 0.00 2.71
1828 1900 9.573166 ACCTAATAAATGAAGCTATGCATGTTA 57.427 29.630 10.16 0.00 0.00 2.41
1829 1901 9.831737 CCTAATAAATGAAGCTATGCATGTTAC 57.168 33.333 10.16 0.00 0.00 2.50
1830 1902 9.831737 CTAATAAATGAAGCTATGCATGTTACC 57.168 33.333 10.16 0.00 0.00 2.85
1831 1903 7.822161 ATAAATGAAGCTATGCATGTTACCA 57.178 32.000 10.16 2.44 0.00 3.25
1832 1904 5.505173 AATGAAGCTATGCATGTTACCAC 57.495 39.130 10.16 0.00 0.00 4.16
1833 1905 3.949132 TGAAGCTATGCATGTTACCACA 58.051 40.909 10.16 0.00 37.31 4.17
1834 1906 3.689161 TGAAGCTATGCATGTTACCACAC 59.311 43.478 10.16 0.00 35.03 3.82
1835 1907 3.634397 AGCTATGCATGTTACCACACT 57.366 42.857 10.16 0.00 35.03 3.55
1836 1908 3.955471 AGCTATGCATGTTACCACACTT 58.045 40.909 10.16 0.00 35.03 3.16
1837 1909 5.097742 AGCTATGCATGTTACCACACTTA 57.902 39.130 10.16 0.00 35.03 2.24
1838 1910 5.684704 AGCTATGCATGTTACCACACTTAT 58.315 37.500 10.16 0.00 35.03 1.73
1839 1911 5.528690 AGCTATGCATGTTACCACACTTATG 59.471 40.000 10.16 0.00 35.03 1.90
1840 1912 5.296780 GCTATGCATGTTACCACACTTATGT 59.703 40.000 10.16 0.00 40.80 2.29
1841 1913 6.183360 GCTATGCATGTTACCACACTTATGTT 60.183 38.462 10.16 0.00 36.72 2.71
1842 1914 7.011950 GCTATGCATGTTACCACACTTATGTTA 59.988 37.037 10.16 0.00 36.72 2.41
1843 1915 6.489127 TGCATGTTACCACACTTATGTTAC 57.511 37.500 0.00 0.00 36.72 2.50
1844 1916 6.234920 TGCATGTTACCACACTTATGTTACT 58.765 36.000 0.00 0.00 36.72 2.24
1845 1917 7.387643 TGCATGTTACCACACTTATGTTACTA 58.612 34.615 0.00 0.00 36.72 1.82
1846 1918 7.332430 TGCATGTTACCACACTTATGTTACTAC 59.668 37.037 0.00 0.00 36.72 2.73
1847 1919 7.201582 GCATGTTACCACACTTATGTTACTACC 60.202 40.741 0.00 0.00 36.72 3.18
1848 1920 6.700352 TGTTACCACACTTATGTTACTACCC 58.300 40.000 0.00 0.00 36.72 3.69
1849 1921 6.269538 TGTTACCACACTTATGTTACTACCCA 59.730 38.462 0.00 0.00 36.72 4.51
1850 1922 5.156608 ACCACACTTATGTTACTACCCAC 57.843 43.478 0.00 0.00 36.72 4.61
1851 1923 4.842380 ACCACACTTATGTTACTACCCACT 59.158 41.667 0.00 0.00 36.72 4.00
1852 1924 6.018469 ACCACACTTATGTTACTACCCACTA 58.982 40.000 0.00 0.00 36.72 2.74
1853 1925 6.670902 ACCACACTTATGTTACTACCCACTAT 59.329 38.462 0.00 0.00 36.72 2.12
1854 1926 6.984474 CCACACTTATGTTACTACCCACTATG 59.016 42.308 0.00 0.00 36.72 2.23
1855 1927 7.147794 CCACACTTATGTTACTACCCACTATGA 60.148 40.741 0.00 0.00 36.72 2.15
1856 1928 8.255206 CACACTTATGTTACTACCCACTATGAA 58.745 37.037 0.00 0.00 36.72 2.57
1857 1929 8.475639 ACACTTATGTTACTACCCACTATGAAG 58.524 37.037 0.00 0.00 34.46 3.02
1858 1930 8.692710 CACTTATGTTACTACCCACTATGAAGA 58.307 37.037 0.00 0.00 0.00 2.87
1859 1931 9.435570 ACTTATGTTACTACCCACTATGAAGAT 57.564 33.333 0.00 0.00 0.00 2.40
1864 1936 9.925545 TGTTACTACCCACTATGAAGATAGTAA 57.074 33.333 0.00 0.00 42.55 2.24
1866 1938 9.925545 TTACTACCCACTATGAAGATAGTAACA 57.074 33.333 0.00 0.00 42.55 2.41
1868 1940 8.861086 ACTACCCACTATGAAGATAGTAACATG 58.139 37.037 0.00 0.00 42.55 3.21
1869 1941 7.067496 ACCCACTATGAAGATAGTAACATGG 57.933 40.000 0.00 0.00 42.55 3.66
1870 1942 6.615726 ACCCACTATGAAGATAGTAACATGGT 59.384 38.462 0.00 0.00 42.55 3.55
1871 1943 7.155328 CCCACTATGAAGATAGTAACATGGTC 58.845 42.308 0.00 0.00 42.55 4.02
1872 1944 7.015682 CCCACTATGAAGATAGTAACATGGTCT 59.984 40.741 0.00 0.00 42.55 3.85
1873 1945 9.078990 CCACTATGAAGATAGTAACATGGTCTA 57.921 37.037 0.00 0.00 42.55 2.59
1875 1947 9.303116 ACTATGAAGATAGTAACATGGTCTAGG 57.697 37.037 0.00 0.00 42.61 3.02
1876 1948 9.521841 CTATGAAGATAGTAACATGGTCTAGGA 57.478 37.037 0.00 0.00 0.00 2.94
1877 1949 8.783660 ATGAAGATAGTAACATGGTCTAGGAA 57.216 34.615 0.00 0.00 0.00 3.36
1878 1950 8.783660 TGAAGATAGTAACATGGTCTAGGAAT 57.216 34.615 0.00 0.00 0.00 3.01
1879 1951 9.877222 TGAAGATAGTAACATGGTCTAGGAATA 57.123 33.333 0.00 0.00 0.00 1.75
1881 1953 8.338072 AGATAGTAACATGGTCTAGGAATACG 57.662 38.462 0.00 0.00 0.00 3.06
1882 1954 7.943447 AGATAGTAACATGGTCTAGGAATACGT 59.057 37.037 0.00 0.00 0.00 3.57
1883 1955 6.145338 AGTAACATGGTCTAGGAATACGTG 57.855 41.667 0.00 0.00 0.00 4.49
1884 1956 5.655532 AGTAACATGGTCTAGGAATACGTGT 59.344 40.000 0.00 0.00 0.00 4.49
1885 1957 6.830324 AGTAACATGGTCTAGGAATACGTGTA 59.170 38.462 0.00 0.00 0.00 2.90
1886 1958 6.726490 AACATGGTCTAGGAATACGTGTAT 57.274 37.500 0.00 0.00 0.00 2.29
1887 1959 6.085555 ACATGGTCTAGGAATACGTGTATG 57.914 41.667 0.00 0.00 0.00 2.39
1888 1960 5.597182 ACATGGTCTAGGAATACGTGTATGT 59.403 40.000 0.00 0.00 0.00 2.29
1889 1961 6.097839 ACATGGTCTAGGAATACGTGTATGTT 59.902 38.462 0.00 0.00 0.00 2.71
1890 1962 7.286087 ACATGGTCTAGGAATACGTGTATGTTA 59.714 37.037 0.00 0.00 0.00 2.41
1891 1963 7.031226 TGGTCTAGGAATACGTGTATGTTAC 57.969 40.000 0.00 0.00 0.00 2.50
1892 1964 6.830324 TGGTCTAGGAATACGTGTATGTTACT 59.170 38.462 0.00 0.00 0.00 2.24
1893 1965 7.992608 TGGTCTAGGAATACGTGTATGTTACTA 59.007 37.037 0.00 0.00 0.00 1.82
1894 1966 8.502387 GGTCTAGGAATACGTGTATGTTACTAG 58.498 40.741 0.00 5.50 0.00 2.57
1895 1967 9.050601 GTCTAGGAATACGTGTATGTTACTAGT 57.949 37.037 0.00 0.00 0.00 2.57
1896 1968 9.049523 TCTAGGAATACGTGTATGTTACTAGTG 57.950 37.037 5.39 0.00 0.00 2.74
1897 1969 7.636150 AGGAATACGTGTATGTTACTAGTGT 57.364 36.000 5.39 0.00 0.00 3.55
1898 1970 8.737168 AGGAATACGTGTATGTTACTAGTGTA 57.263 34.615 5.39 0.00 0.00 2.90
1899 1971 9.347240 AGGAATACGTGTATGTTACTAGTGTAT 57.653 33.333 5.39 0.00 0.00 2.29
1900 1972 9.390795 GGAATACGTGTATGTTACTAGTGTATG 57.609 37.037 5.39 0.00 0.00 2.39
1901 1973 9.941664 GAATACGTGTATGTTACTAGTGTATGT 57.058 33.333 5.39 0.00 0.00 2.29
1905 1977 8.950210 ACGTGTATGTTACTAGTGTATGTTACT 58.050 33.333 5.39 0.00 0.00 2.24
1906 1978 9.430838 CGTGTATGTTACTAGTGTATGTTACTC 57.569 37.037 5.39 1.24 0.00 2.59
1915 1987 8.988064 ACTAGTGTATGTTACTCTTCATTGTG 57.012 34.615 0.00 0.00 34.65 3.33
1916 1988 8.035394 ACTAGTGTATGTTACTCTTCATTGTGG 58.965 37.037 0.00 0.00 34.65 4.17
1917 1989 5.643777 AGTGTATGTTACTCTTCATTGTGGC 59.356 40.000 0.00 0.00 0.00 5.01
1918 1990 5.643777 GTGTATGTTACTCTTCATTGTGGCT 59.356 40.000 0.00 0.00 0.00 4.75
1919 1991 6.816640 GTGTATGTTACTCTTCATTGTGGCTA 59.183 38.462 0.00 0.00 0.00 3.93
1920 1992 7.010552 GTGTATGTTACTCTTCATTGTGGCTAG 59.989 40.741 0.00 0.00 0.00 3.42
1921 1993 5.483685 TGTTACTCTTCATTGTGGCTAGT 57.516 39.130 0.00 0.00 0.00 2.57
1948 2020 3.073062 AGCCTGTTTCTATTATCCCGCAT 59.927 43.478 0.00 0.00 0.00 4.73
1960 2032 0.107703 TCCCGCATGAATCACTCCAC 60.108 55.000 0.00 0.00 0.00 4.02
1961 2033 0.107508 CCCGCATGAATCACTCCACT 60.108 55.000 0.00 0.00 0.00 4.00
1969 2041 7.293745 CGCATGAATCACTCCACTATTTATTC 58.706 38.462 0.00 0.00 0.00 1.75
1971 2043 7.446625 GCATGAATCACTCCACTATTTATTCCT 59.553 37.037 0.00 0.00 0.00 3.36
1974 2046 9.396022 TGAATCACTCCACTATTTATTCCTTTC 57.604 33.333 0.00 0.00 0.00 2.62
1998 2071 1.104577 ATCCTCTCGCCGTCTTCTCC 61.105 60.000 0.00 0.00 0.00 3.71
2004 2077 2.125633 GCCGTCTTCTCCCCGTTC 60.126 66.667 0.00 0.00 0.00 3.95
2018 2091 2.097036 CCCGTTCCTCCCCAAATAAAC 58.903 52.381 0.00 0.00 0.00 2.01
2027 2100 1.476488 CCCCAAATAAACTCTTGCCGG 59.524 52.381 0.00 0.00 0.00 6.13
2048 2121 0.172578 GATGACCACCGTCGATGTCA 59.827 55.000 3.52 11.87 42.37 3.58
2058 2131 3.250323 CGATGTCACGAGCAGCCG 61.250 66.667 0.00 2.15 35.09 5.52
2073 2221 2.516930 CCGTCATCCACATGCCCC 60.517 66.667 0.00 0.00 0.00 5.80
2078 2226 4.511246 ATCCACATGCCCCCGCTG 62.511 66.667 0.00 0.00 35.36 5.18
2145 2293 4.881440 GCCGCCCATCCATCAGCA 62.881 66.667 0.00 0.00 0.00 4.41
2150 2298 2.191375 CCATCCATCAGCACGGCT 59.809 61.111 0.00 0.00 40.77 5.52
2194 2342 1.339631 TGGGATAGGGTGCTTCAAACG 60.340 52.381 0.00 0.00 0.00 3.60
2198 2346 4.038080 GGGTGCTTCAAACGGCGG 62.038 66.667 13.24 0.00 0.00 6.13
2199 2347 3.284449 GGTGCTTCAAACGGCGGT 61.284 61.111 13.24 0.00 0.00 5.68
2213 2361 1.644786 GGCGGTGACCATGCTACAAC 61.645 60.000 1.11 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 121 7.023171 ACCAACCACCTAATGTTACTTCATA 57.977 36.000 0.00 0.00 0.00 2.15
156 160 2.625823 CCGGCGACCTGTTGCAATT 61.626 57.895 9.30 0.00 41.74 2.32
297 303 3.664025 CTGCCGTGATTCGCCCAGA 62.664 63.158 6.67 0.00 38.60 3.86
311 317 2.424956 GAGATTTGAACCATGACCTGCC 59.575 50.000 0.00 0.00 0.00 4.85
479 491 4.161565 AGTGCTTTCTACCGTATCCAATCA 59.838 41.667 0.00 0.00 0.00 2.57
519 531 9.023962 TCCTCTTGTTCATATACAATGCTTTTT 57.976 29.630 0.00 0.00 37.39 1.94
520 532 8.462016 GTCCTCTTGTTCATATACAATGCTTTT 58.538 33.333 0.00 0.00 37.39 2.27
521 533 7.201644 CGTCCTCTTGTTCATATACAATGCTTT 60.202 37.037 0.00 0.00 37.39 3.51
522 534 6.258727 CGTCCTCTTGTTCATATACAATGCTT 59.741 38.462 0.00 0.00 37.39 3.91
523 535 5.755375 CGTCCTCTTGTTCATATACAATGCT 59.245 40.000 0.00 0.00 37.39 3.79
524 536 5.050091 CCGTCCTCTTGTTCATATACAATGC 60.050 44.000 0.00 0.00 37.39 3.56
525 537 5.466728 CCCGTCCTCTTGTTCATATACAATG 59.533 44.000 0.00 0.00 37.39 2.82
526 538 5.130477 ACCCGTCCTCTTGTTCATATACAAT 59.870 40.000 0.00 0.00 37.39 2.71
527 539 4.468510 ACCCGTCCTCTTGTTCATATACAA 59.531 41.667 0.00 0.00 36.63 2.41
528 540 4.028131 ACCCGTCCTCTTGTTCATATACA 58.972 43.478 0.00 0.00 0.00 2.29
529 541 4.667519 ACCCGTCCTCTTGTTCATATAC 57.332 45.455 0.00 0.00 0.00 1.47
530 542 6.795144 TTAACCCGTCCTCTTGTTCATATA 57.205 37.500 0.00 0.00 0.00 0.86
531 543 5.687166 TTAACCCGTCCTCTTGTTCATAT 57.313 39.130 0.00 0.00 0.00 1.78
532 544 5.486735 TTTAACCCGTCCTCTTGTTCATA 57.513 39.130 0.00 0.00 0.00 2.15
533 545 4.360951 TTTAACCCGTCCTCTTGTTCAT 57.639 40.909 0.00 0.00 0.00 2.57
534 546 3.842007 TTTAACCCGTCCTCTTGTTCA 57.158 42.857 0.00 0.00 0.00 3.18
614 626 7.810282 CGGGAGATAAATACACTAGAAGTCATG 59.190 40.741 0.00 0.00 0.00 3.07
634 646 6.795144 TTTAGGTGTATAATTCACGGGAGA 57.205 37.500 0.00 0.00 36.76 3.71
648 660 9.357652 CGCAATTACTAGTTACTTTTAGGTGTA 57.642 33.333 0.00 0.00 0.00 2.90
649 661 7.874528 ACGCAATTACTAGTTACTTTTAGGTGT 59.125 33.333 0.00 0.00 0.00 4.16
655 667 7.570691 GCTCACACGCAATTACTAGTTACTTTT 60.571 37.037 0.00 0.00 0.00 2.27
663 675 3.511699 TCAGCTCACACGCAATTACTAG 58.488 45.455 0.00 0.00 0.00 2.57
702 714 1.407618 GGGCGGAATTGGGAAATACAC 59.592 52.381 0.00 0.00 0.00 2.90
703 715 1.286553 AGGGCGGAATTGGGAAATACA 59.713 47.619 0.00 0.00 0.00 2.29
705 717 1.476110 CGAGGGCGGAATTGGGAAATA 60.476 52.381 0.00 0.00 0.00 1.40
706 718 0.751643 CGAGGGCGGAATTGGGAAAT 60.752 55.000 0.00 0.00 0.00 2.17
707 719 1.377987 CGAGGGCGGAATTGGGAAA 60.378 57.895 0.00 0.00 0.00 3.13
708 720 2.270850 CGAGGGCGGAATTGGGAA 59.729 61.111 0.00 0.00 0.00 3.97
709 721 3.006728 ACGAGGGCGGAATTGGGA 61.007 61.111 0.00 0.00 43.17 4.37
710 722 2.513897 GACGAGGGCGGAATTGGG 60.514 66.667 0.00 0.00 43.17 4.12
711 723 2.106683 GTGACGAGGGCGGAATTGG 61.107 63.158 0.00 0.00 43.17 3.16
712 724 0.953471 TTGTGACGAGGGCGGAATTG 60.953 55.000 0.00 0.00 43.17 2.32
713 725 0.035439 ATTGTGACGAGGGCGGAATT 60.035 50.000 0.00 0.00 43.17 2.17
714 726 0.462047 GATTGTGACGAGGGCGGAAT 60.462 55.000 0.00 0.00 43.17 3.01
715 727 1.079405 GATTGTGACGAGGGCGGAA 60.079 57.895 0.00 0.00 43.17 4.30
716 728 1.613317 ATGATTGTGACGAGGGCGGA 61.613 55.000 0.00 0.00 43.17 5.54
717 729 0.104120 TATGATTGTGACGAGGGCGG 59.896 55.000 0.00 0.00 43.17 6.13
718 730 1.491670 CTATGATTGTGACGAGGGCG 58.508 55.000 0.00 0.00 44.79 6.13
719 731 1.202580 AGCTATGATTGTGACGAGGGC 60.203 52.381 0.00 0.00 0.00 5.19
737 749 1.034292 GGTTGGATCTGGGCAAGAGC 61.034 60.000 0.00 0.00 40.80 4.09
754 766 1.901085 GGAGAGGACGCATCTTGGT 59.099 57.895 0.00 0.00 0.00 3.67
790 802 7.030768 TGAATGAGTTGTTATTATCGTCGTCA 58.969 34.615 0.00 0.00 0.00 4.35
818 830 2.860293 CGAGCGCGAACCAAATGT 59.140 55.556 12.10 0.00 40.82 2.71
947 964 3.866449 GCTCTACTCCAGGTCCTTTGTTG 60.866 52.174 0.00 0.00 0.00 3.33
948 965 2.303311 GCTCTACTCCAGGTCCTTTGTT 59.697 50.000 0.00 0.00 0.00 2.83
949 966 1.903183 GCTCTACTCCAGGTCCTTTGT 59.097 52.381 0.00 0.00 0.00 2.83
952 969 1.077993 ACAGCTCTACTCCAGGTCCTT 59.922 52.381 0.00 0.00 0.00 3.36
958 975 1.476085 CAGTCCACAGCTCTACTCCAG 59.524 57.143 0.00 0.00 0.00 3.86
965 982 2.644212 CGGCTCAGTCCACAGCTCT 61.644 63.158 0.00 0.00 35.82 4.09
1072 1096 3.286751 GTTGAGCGGCCACAGCAA 61.287 61.111 2.24 0.00 42.56 3.91
1405 1464 9.393512 AGAATTCATCTCTTTTTACAGATCAGG 57.606 33.333 8.44 0.00 30.46 3.86
1501 1565 7.606456 AGCCGACAGTGAATTAATCTTTAGAAA 59.394 33.333 0.00 0.00 0.00 2.52
1518 1582 1.185618 TGCTACTCCAAGCCGACAGT 61.186 55.000 0.00 0.00 42.05 3.55
1561 1633 5.446875 CGGCTTTAAACGTTTCCTAATCTCC 60.447 44.000 18.42 8.13 0.00 3.71
1562 1634 5.446875 CCGGCTTTAAACGTTTCCTAATCTC 60.447 44.000 18.42 0.72 0.00 2.75
1568 1640 1.875514 GACCGGCTTTAAACGTTTCCT 59.124 47.619 18.42 0.00 0.00 3.36
1570 1642 3.038017 GTTGACCGGCTTTAAACGTTTC 58.962 45.455 18.42 2.59 0.00 2.78
1587 1659 1.072505 GGGAGTTTCAGCCGGTTGA 59.927 57.895 17.98 17.98 0.00 3.18
1589 1661 2.434774 GGGGAGTTTCAGCCGGTT 59.565 61.111 1.90 0.00 0.00 4.44
1605 1677 2.864114 CAGCATGGACTTGACTGGG 58.136 57.895 0.00 0.00 0.00 4.45
1624 1696 3.070576 GATGGGTGGGCCTGTTGC 61.071 66.667 4.53 0.00 40.16 4.17
1635 1707 2.032620 CTAGTCTAAGCGGTGATGGGT 58.967 52.381 0.00 0.00 0.00 4.51
1636 1708 1.269831 GCTAGTCTAAGCGGTGATGGG 60.270 57.143 0.00 0.00 31.76 4.00
1639 1711 1.409427 GTGGCTAGTCTAAGCGGTGAT 59.591 52.381 0.00 0.00 43.74 3.06
1640 1712 0.815734 GTGGCTAGTCTAAGCGGTGA 59.184 55.000 0.00 0.00 43.74 4.02
1642 1714 1.263356 TTGTGGCTAGTCTAAGCGGT 58.737 50.000 0.00 0.00 43.74 5.68
1643 1715 2.205074 CATTGTGGCTAGTCTAAGCGG 58.795 52.381 0.00 0.00 43.74 5.52
1645 1717 2.170607 TCCCATTGTGGCTAGTCTAAGC 59.829 50.000 0.00 0.00 41.99 3.09
1646 1718 3.452627 ACTCCCATTGTGGCTAGTCTAAG 59.547 47.826 0.00 0.00 35.79 2.18
1647 1719 3.450904 ACTCCCATTGTGGCTAGTCTAA 58.549 45.455 0.00 0.00 35.79 2.10
1648 1720 3.116096 ACTCCCATTGTGGCTAGTCTA 57.884 47.619 0.00 0.00 35.79 2.59
1649 1721 1.958288 ACTCCCATTGTGGCTAGTCT 58.042 50.000 0.00 0.00 35.79 3.24
1650 1722 3.906720 TTACTCCCATTGTGGCTAGTC 57.093 47.619 5.75 0.00 35.79 2.59
1651 1723 4.862641 AATTACTCCCATTGTGGCTAGT 57.137 40.909 7.20 7.20 35.79 2.57
1652 1724 5.192927 TGAAATTACTCCCATTGTGGCTAG 58.807 41.667 0.00 0.00 35.79 3.42
1653 1725 5.186256 TGAAATTACTCCCATTGTGGCTA 57.814 39.130 0.00 0.00 35.79 3.93
1654 1726 4.019174 CTGAAATTACTCCCATTGTGGCT 58.981 43.478 0.00 0.00 35.79 4.75
1655 1727 3.429410 GCTGAAATTACTCCCATTGTGGC 60.429 47.826 0.00 0.00 35.79 5.01
1656 1728 3.763360 TGCTGAAATTACTCCCATTGTGG 59.237 43.478 0.00 0.00 37.25 4.17
1657 1729 4.460382 ACTGCTGAAATTACTCCCATTGTG 59.540 41.667 0.00 0.00 0.00 3.33
1658 1730 4.666512 ACTGCTGAAATTACTCCCATTGT 58.333 39.130 0.00 0.00 0.00 2.71
1659 1731 6.150976 TGTTACTGCTGAAATTACTCCCATTG 59.849 38.462 0.00 0.00 0.00 2.82
1660 1732 6.245408 TGTTACTGCTGAAATTACTCCCATT 58.755 36.000 0.00 0.00 0.00 3.16
1661 1733 5.815581 TGTTACTGCTGAAATTACTCCCAT 58.184 37.500 0.00 0.00 0.00 4.00
1662 1734 5.235850 TGTTACTGCTGAAATTACTCCCA 57.764 39.130 0.00 0.00 0.00 4.37
1663 1735 5.880332 TGATGTTACTGCTGAAATTACTCCC 59.120 40.000 0.00 0.00 0.00 4.30
1664 1736 6.985188 TGATGTTACTGCTGAAATTACTCC 57.015 37.500 0.00 0.00 0.00 3.85
1665 1737 8.034058 ACTTGATGTTACTGCTGAAATTACTC 57.966 34.615 0.00 0.00 0.00 2.59
1666 1738 7.119846 GGACTTGATGTTACTGCTGAAATTACT 59.880 37.037 0.00 0.00 0.00 2.24
1667 1739 7.094805 TGGACTTGATGTTACTGCTGAAATTAC 60.095 37.037 0.00 0.00 0.00 1.89
1668 1740 6.939730 TGGACTTGATGTTACTGCTGAAATTA 59.060 34.615 0.00 0.00 0.00 1.40
1669 1741 5.769662 TGGACTTGATGTTACTGCTGAAATT 59.230 36.000 0.00 0.00 0.00 1.82
1670 1742 5.316167 TGGACTTGATGTTACTGCTGAAAT 58.684 37.500 0.00 0.00 0.00 2.17
1671 1743 4.713553 TGGACTTGATGTTACTGCTGAAA 58.286 39.130 0.00 0.00 0.00 2.69
1672 1744 4.350368 TGGACTTGATGTTACTGCTGAA 57.650 40.909 0.00 0.00 0.00 3.02
1673 1745 4.065088 GTTGGACTTGATGTTACTGCTGA 58.935 43.478 0.00 0.00 0.00 4.26
1674 1746 4.067896 AGTTGGACTTGATGTTACTGCTG 58.932 43.478 0.00 0.00 0.00 4.41
1675 1747 4.202357 TGAGTTGGACTTGATGTTACTGCT 60.202 41.667 0.00 0.00 0.00 4.24
1676 1748 4.065088 TGAGTTGGACTTGATGTTACTGC 58.935 43.478 0.00 0.00 0.00 4.40
1677 1749 4.153117 GCTGAGTTGGACTTGATGTTACTG 59.847 45.833 0.00 0.00 0.00 2.74
1678 1750 4.202357 TGCTGAGTTGGACTTGATGTTACT 60.202 41.667 0.00 0.00 0.00 2.24
1679 1751 4.065088 TGCTGAGTTGGACTTGATGTTAC 58.935 43.478 0.00 0.00 0.00 2.50
1680 1752 4.350368 TGCTGAGTTGGACTTGATGTTA 57.650 40.909 0.00 0.00 0.00 2.41
1681 1753 3.213206 TGCTGAGTTGGACTTGATGTT 57.787 42.857 0.00 0.00 0.00 2.71
1682 1754 2.936919 TGCTGAGTTGGACTTGATGT 57.063 45.000 0.00 0.00 0.00 3.06
1683 1755 4.778534 ATTTGCTGAGTTGGACTTGATG 57.221 40.909 0.00 0.00 0.00 3.07
1684 1756 5.535333 CAAATTTGCTGAGTTGGACTTGAT 58.465 37.500 5.01 0.00 0.00 2.57
1685 1757 4.935702 CAAATTTGCTGAGTTGGACTTGA 58.064 39.130 5.01 0.00 0.00 3.02
1706 1778 4.142708 CGTTAACTCATTGCCACATAAGCA 60.143 41.667 3.71 0.00 38.81 3.91
1707 1779 4.094294 TCGTTAACTCATTGCCACATAAGC 59.906 41.667 3.71 0.00 0.00 3.09
1708 1780 5.220662 CCTCGTTAACTCATTGCCACATAAG 60.221 44.000 3.71 0.00 0.00 1.73
1709 1781 4.634004 CCTCGTTAACTCATTGCCACATAA 59.366 41.667 3.71 0.00 0.00 1.90
1710 1782 4.081365 TCCTCGTTAACTCATTGCCACATA 60.081 41.667 3.71 0.00 0.00 2.29
1711 1783 3.009723 CCTCGTTAACTCATTGCCACAT 58.990 45.455 3.71 0.00 0.00 3.21
1712 1784 2.037902 TCCTCGTTAACTCATTGCCACA 59.962 45.455 3.71 0.00 0.00 4.17
1713 1785 2.673368 CTCCTCGTTAACTCATTGCCAC 59.327 50.000 3.71 0.00 0.00 5.01
1714 1786 2.565391 TCTCCTCGTTAACTCATTGCCA 59.435 45.455 3.71 0.00 0.00 4.92
1715 1787 3.119101 TCTCTCCTCGTTAACTCATTGCC 60.119 47.826 3.71 0.00 0.00 4.52
1716 1788 4.109050 CTCTCTCCTCGTTAACTCATTGC 58.891 47.826 3.71 0.00 0.00 3.56
1717 1789 4.158764 ACCTCTCTCCTCGTTAACTCATTG 59.841 45.833 3.71 0.00 0.00 2.82
1718 1790 4.345854 ACCTCTCTCCTCGTTAACTCATT 58.654 43.478 3.71 0.00 0.00 2.57
1719 1791 3.970842 ACCTCTCTCCTCGTTAACTCAT 58.029 45.455 3.71 0.00 0.00 2.90
1720 1792 3.436577 ACCTCTCTCCTCGTTAACTCA 57.563 47.619 3.71 0.00 0.00 3.41
1721 1793 4.516323 ACTACCTCTCTCCTCGTTAACTC 58.484 47.826 3.71 0.00 0.00 3.01
1722 1794 4.573021 ACTACCTCTCTCCTCGTTAACT 57.427 45.455 3.71 0.00 0.00 2.24
1723 1795 5.427378 ACTACTACCTCTCTCCTCGTTAAC 58.573 45.833 0.00 0.00 0.00 2.01
1724 1796 5.690464 ACTACTACCTCTCTCCTCGTTAA 57.310 43.478 0.00 0.00 0.00 2.01
1725 1797 5.896678 ACTACTACTACCTCTCTCCTCGTTA 59.103 44.000 0.00 0.00 0.00 3.18
1726 1798 4.716287 ACTACTACTACCTCTCTCCTCGTT 59.284 45.833 0.00 0.00 0.00 3.85
1727 1799 4.289245 ACTACTACTACCTCTCTCCTCGT 58.711 47.826 0.00 0.00 0.00 4.18
1728 1800 4.942761 ACTACTACTACCTCTCTCCTCG 57.057 50.000 0.00 0.00 0.00 4.63
1729 1801 7.365497 AGTTACTACTACTACCTCTCTCCTC 57.635 44.000 0.00 0.00 31.21 3.71
1730 1802 7.754091 AAGTTACTACTACTACCTCTCTCCT 57.246 40.000 0.00 0.00 33.17 3.69
1731 1803 7.657354 GCTAAGTTACTACTACTACCTCTCTCC 59.343 44.444 0.00 0.00 33.17 3.71
1732 1804 8.424133 AGCTAAGTTACTACTACTACCTCTCTC 58.576 40.741 0.00 0.00 33.17 3.20
1733 1805 8.322905 AGCTAAGTTACTACTACTACCTCTCT 57.677 38.462 0.00 0.00 33.17 3.10
1734 1806 9.696917 CTAGCTAAGTTACTACTACTACCTCTC 57.303 40.741 0.00 0.00 33.17 3.20
1735 1807 9.212593 ACTAGCTAAGTTACTACTACTACCTCT 57.787 37.037 0.00 0.00 33.35 3.69
1736 1808 9.830975 AACTAGCTAAGTTACTACTACTACCTC 57.169 37.037 0.00 0.00 46.85 3.85
1749 1821 8.184192 GTGATGTTACGGTAACTAGCTAAGTTA 58.816 37.037 26.22 7.50 46.85 2.24
1751 1823 6.151648 TGTGATGTTACGGTAACTAGCTAAGT 59.848 38.462 26.22 7.27 41.49 2.24
1752 1824 6.558009 TGTGATGTTACGGTAACTAGCTAAG 58.442 40.000 26.22 0.00 39.38 2.18
1753 1825 6.513806 TGTGATGTTACGGTAACTAGCTAA 57.486 37.500 26.22 10.00 39.38 3.09
1754 1826 6.095860 ACATGTGATGTTACGGTAACTAGCTA 59.904 38.462 26.22 10.63 41.63 3.32
1755 1827 5.105473 ACATGTGATGTTACGGTAACTAGCT 60.105 40.000 26.22 12.20 41.63 3.32
1756 1828 5.107133 ACATGTGATGTTACGGTAACTAGC 58.893 41.667 26.22 17.49 41.63 3.42
1757 1829 5.747197 GGACATGTGATGTTACGGTAACTAG 59.253 44.000 26.22 13.26 45.03 2.57
1758 1830 5.394443 GGGACATGTGATGTTACGGTAACTA 60.394 44.000 26.22 15.81 45.03 2.24
1759 1831 4.501071 GGACATGTGATGTTACGGTAACT 58.499 43.478 26.22 14.93 45.03 2.24
1760 1832 3.619929 GGGACATGTGATGTTACGGTAAC 59.380 47.826 21.20 21.20 45.03 2.50
1761 1833 3.261137 TGGGACATGTGATGTTACGGTAA 59.739 43.478 1.15 0.00 45.03 2.85
1762 1834 2.832733 TGGGACATGTGATGTTACGGTA 59.167 45.455 1.15 0.00 45.03 4.02
1763 1835 1.626321 TGGGACATGTGATGTTACGGT 59.374 47.619 1.15 0.00 45.03 4.83
1764 1836 2.394930 TGGGACATGTGATGTTACGG 57.605 50.000 1.15 0.00 45.03 4.02
1765 1837 3.487376 GCATTGGGACATGTGATGTTACG 60.487 47.826 1.15 0.00 45.03 3.18
1766 1838 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
1767 1839 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
1768 1840 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
1770 1842 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
1771 1843 5.141910 TCATATTGCATTGGGACATGTGAT 58.858 37.500 1.15 0.00 39.30 3.06
1772 1844 4.534797 TCATATTGCATTGGGACATGTGA 58.465 39.130 1.15 0.00 39.30 3.58
1773 1845 4.340097 ACTCATATTGCATTGGGACATGTG 59.660 41.667 1.15 0.00 39.30 3.21
1774 1846 4.539726 ACTCATATTGCATTGGGACATGT 58.460 39.130 0.00 0.00 39.30 3.21
1775 1847 4.825634 AGACTCATATTGCATTGGGACATG 59.174 41.667 0.00 0.00 39.30 3.21
1776 1848 5.057843 AGACTCATATTGCATTGGGACAT 57.942 39.130 0.00 0.00 39.30 3.06
1777 1849 4.508551 AGACTCATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
1778 1850 7.119846 GGTTATAGACTCATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
1779 1851 7.017551 AGGTTATAGACTCATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
1780 1852 7.170965 AGGTTATAGACTCATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
1781 1853 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
1800 1872 9.573166 ACATGCATAGCTTCATTTATTAGGTTA 57.427 29.630 0.00 0.00 0.00 2.85
1801 1873 8.469309 ACATGCATAGCTTCATTTATTAGGTT 57.531 30.769 0.00 0.00 0.00 3.50
1802 1874 8.469309 AACATGCATAGCTTCATTTATTAGGT 57.531 30.769 0.00 0.00 0.00 3.08
1803 1875 9.831737 GTAACATGCATAGCTTCATTTATTAGG 57.168 33.333 0.00 0.00 0.00 2.69
1804 1876 9.831737 GGTAACATGCATAGCTTCATTTATTAG 57.168 33.333 0.00 0.00 0.00 1.73
1805 1877 9.348476 TGGTAACATGCATAGCTTCATTTATTA 57.652 29.630 0.00 0.00 46.17 0.98
1806 1878 8.236585 TGGTAACATGCATAGCTTCATTTATT 57.763 30.769 0.00 0.00 46.17 1.40
1807 1879 7.822161 TGGTAACATGCATAGCTTCATTTAT 57.178 32.000 0.00 0.00 46.17 1.40
1825 1897 6.591448 GTGGGTAGTAACATAAGTGTGGTAAC 59.409 42.308 0.00 0.00 38.92 2.50
1826 1898 6.497954 AGTGGGTAGTAACATAAGTGTGGTAA 59.502 38.462 0.00 0.00 38.92 2.85
1827 1899 6.018469 AGTGGGTAGTAACATAAGTGTGGTA 58.982 40.000 0.00 0.00 38.92 3.25
1828 1900 4.842380 AGTGGGTAGTAACATAAGTGTGGT 59.158 41.667 0.00 0.00 38.92 4.16
1829 1901 5.416271 AGTGGGTAGTAACATAAGTGTGG 57.584 43.478 0.00 0.00 38.92 4.17
1830 1902 7.778083 TCATAGTGGGTAGTAACATAAGTGTG 58.222 38.462 0.00 0.00 38.92 3.82
1831 1903 7.966339 TCATAGTGGGTAGTAACATAAGTGT 57.034 36.000 0.00 0.00 41.28 3.55
1832 1904 8.692710 TCTTCATAGTGGGTAGTAACATAAGTG 58.307 37.037 0.00 0.00 0.00 3.16
1833 1905 8.834004 TCTTCATAGTGGGTAGTAACATAAGT 57.166 34.615 0.00 0.00 0.00 2.24
1838 1910 9.925545 TTACTATCTTCATAGTGGGTAGTAACA 57.074 33.333 5.12 0.00 44.33 2.41
1840 1912 9.925545 TGTTACTATCTTCATAGTGGGTAGTAA 57.074 33.333 5.12 0.00 44.33 2.24
1842 1914 8.861086 CATGTTACTATCTTCATAGTGGGTAGT 58.139 37.037 5.12 0.00 44.33 2.73
1843 1915 8.307483 CCATGTTACTATCTTCATAGTGGGTAG 58.693 40.741 5.12 0.00 44.33 3.18
1844 1916 7.787904 ACCATGTTACTATCTTCATAGTGGGTA 59.212 37.037 5.12 0.00 44.33 3.69
1845 1917 6.615726 ACCATGTTACTATCTTCATAGTGGGT 59.384 38.462 5.12 0.00 44.33 4.51
1846 1918 7.015682 AGACCATGTTACTATCTTCATAGTGGG 59.984 40.741 5.12 0.00 44.33 4.61
1847 1919 7.957002 AGACCATGTTACTATCTTCATAGTGG 58.043 38.462 5.12 0.00 44.33 4.00
1849 1921 9.303116 CCTAGACCATGTTACTATCTTCATAGT 57.697 37.037 0.00 0.56 46.06 2.12
1850 1922 9.521841 TCCTAGACCATGTTACTATCTTCATAG 57.478 37.037 0.00 0.00 38.45 2.23
1851 1923 9.877222 TTCCTAGACCATGTTACTATCTTCATA 57.123 33.333 0.00 0.00 0.00 2.15
1852 1924 8.783660 TTCCTAGACCATGTTACTATCTTCAT 57.216 34.615 0.00 0.00 0.00 2.57
1853 1925 8.783660 ATTCCTAGACCATGTTACTATCTTCA 57.216 34.615 0.00 0.00 0.00 3.02
1855 1927 8.794553 CGTATTCCTAGACCATGTTACTATCTT 58.205 37.037 0.00 0.00 0.00 2.40
1856 1928 7.943447 ACGTATTCCTAGACCATGTTACTATCT 59.057 37.037 0.00 0.00 0.00 1.98
1857 1929 8.021973 CACGTATTCCTAGACCATGTTACTATC 58.978 40.741 0.00 0.00 0.00 2.08
1858 1930 7.504911 ACACGTATTCCTAGACCATGTTACTAT 59.495 37.037 0.00 0.00 0.00 2.12
1859 1931 6.830324 ACACGTATTCCTAGACCATGTTACTA 59.170 38.462 0.00 0.00 0.00 1.82
1860 1932 5.655532 ACACGTATTCCTAGACCATGTTACT 59.344 40.000 0.00 0.00 0.00 2.24
1861 1933 5.899299 ACACGTATTCCTAGACCATGTTAC 58.101 41.667 0.00 0.00 0.00 2.50
1862 1934 7.286087 ACATACACGTATTCCTAGACCATGTTA 59.714 37.037 0.00 0.00 0.00 2.41
1863 1935 6.097839 ACATACACGTATTCCTAGACCATGTT 59.902 38.462 0.00 0.00 0.00 2.71
1864 1936 5.597182 ACATACACGTATTCCTAGACCATGT 59.403 40.000 0.00 0.00 0.00 3.21
1865 1937 6.085555 ACATACACGTATTCCTAGACCATG 57.914 41.667 0.00 0.00 0.00 3.66
1866 1938 6.726490 AACATACACGTATTCCTAGACCAT 57.274 37.500 0.00 0.00 0.00 3.55
1867 1939 6.830324 AGTAACATACACGTATTCCTAGACCA 59.170 38.462 0.00 0.00 0.00 4.02
1868 1940 7.269477 AGTAACATACACGTATTCCTAGACC 57.731 40.000 0.00 0.00 0.00 3.85
1869 1941 9.050601 ACTAGTAACATACACGTATTCCTAGAC 57.949 37.037 0.00 0.00 0.00 2.59
1870 1942 9.049523 CACTAGTAACATACACGTATTCCTAGA 57.950 37.037 0.00 0.00 0.00 2.43
1871 1943 8.834465 ACACTAGTAACATACACGTATTCCTAG 58.166 37.037 0.00 0.00 0.00 3.02
1872 1944 8.737168 ACACTAGTAACATACACGTATTCCTA 57.263 34.615 0.00 0.00 0.00 2.94
1873 1945 7.636150 ACACTAGTAACATACACGTATTCCT 57.364 36.000 0.00 0.00 0.00 3.36
1874 1946 9.390795 CATACACTAGTAACATACACGTATTCC 57.609 37.037 0.00 0.00 33.13 3.01
1875 1947 9.941664 ACATACACTAGTAACATACACGTATTC 57.058 33.333 0.00 0.00 33.13 1.75
1879 1951 8.950210 AGTAACATACACTAGTAACATACACGT 58.050 33.333 0.00 0.00 33.13 4.49
1880 1952 9.430838 GAGTAACATACACTAGTAACATACACG 57.569 37.037 0.00 0.00 33.13 4.49
1890 1962 8.035394 CCACAATGAAGAGTAACATACACTAGT 58.965 37.037 0.00 0.00 0.00 2.57
1891 1963 7.010552 GCCACAATGAAGAGTAACATACACTAG 59.989 40.741 0.00 0.00 0.00 2.57
1892 1964 6.816640 GCCACAATGAAGAGTAACATACACTA 59.183 38.462 0.00 0.00 0.00 2.74
1893 1965 5.643777 GCCACAATGAAGAGTAACATACACT 59.356 40.000 0.00 0.00 0.00 3.55
1894 1966 5.643777 AGCCACAATGAAGAGTAACATACAC 59.356 40.000 0.00 0.00 0.00 2.90
1895 1967 5.804639 AGCCACAATGAAGAGTAACATACA 58.195 37.500 0.00 0.00 0.00 2.29
1896 1968 7.042335 ACTAGCCACAATGAAGAGTAACATAC 58.958 38.462 0.00 0.00 0.00 2.39
1897 1969 7.124298 AGACTAGCCACAATGAAGAGTAACATA 59.876 37.037 0.00 0.00 0.00 2.29
1898 1970 6.054860 ACTAGCCACAATGAAGAGTAACAT 57.945 37.500 0.00 0.00 0.00 2.71
1899 1971 5.246203 AGACTAGCCACAATGAAGAGTAACA 59.754 40.000 0.00 0.00 0.00 2.41
1900 1972 5.725362 AGACTAGCCACAATGAAGAGTAAC 58.275 41.667 0.00 0.00 0.00 2.50
1901 1973 6.360370 AAGACTAGCCACAATGAAGAGTAA 57.640 37.500 0.00 0.00 0.00 2.24
1902 1974 7.476540 TTAAGACTAGCCACAATGAAGAGTA 57.523 36.000 0.00 0.00 0.00 2.59
1903 1975 4.899352 AAGACTAGCCACAATGAAGAGT 57.101 40.909 0.00 0.00 0.00 3.24
1904 1976 5.293079 GCTTAAGACTAGCCACAATGAAGAG 59.707 44.000 6.67 0.00 32.45 2.85
1905 1977 5.178797 GCTTAAGACTAGCCACAATGAAGA 58.821 41.667 6.67 0.00 32.45 2.87
1906 1978 5.476752 GCTTAAGACTAGCCACAATGAAG 57.523 43.478 6.67 0.00 32.45 3.02
1916 1988 9.198837 GATAATAGAAACAGGCTTAAGACTAGC 57.801 37.037 11.44 0.66 37.91 3.42
1917 1989 9.699703 GGATAATAGAAACAGGCTTAAGACTAG 57.300 37.037 11.44 8.31 0.00 2.57
1918 1990 8.648693 GGGATAATAGAAACAGGCTTAAGACTA 58.351 37.037 11.44 0.00 0.00 2.59
1919 1991 7.510407 GGGATAATAGAAACAGGCTTAAGACT 58.490 38.462 4.51 4.51 0.00 3.24
1920 1992 6.424207 CGGGATAATAGAAACAGGCTTAAGAC 59.576 42.308 6.67 2.43 0.00 3.01
1921 1993 6.522054 CGGGATAATAGAAACAGGCTTAAGA 58.478 40.000 6.67 0.00 0.00 2.10
1933 2005 6.114187 AGTGATTCATGCGGGATAATAGAA 57.886 37.500 0.00 0.00 0.00 2.10
1948 2020 9.396022 GAAAGGAATAAATAGTGGAGTGATTCA 57.604 33.333 0.00 0.00 0.00 2.57
1960 2032 9.952030 GAGAGGATAAGGGAAAGGAATAAATAG 57.048 37.037 0.00 0.00 0.00 1.73
1961 2033 8.594550 CGAGAGGATAAGGGAAAGGAATAAATA 58.405 37.037 0.00 0.00 0.00 1.40
1969 2041 1.070914 GGCGAGAGGATAAGGGAAAGG 59.929 57.143 0.00 0.00 0.00 3.11
1971 2043 0.750850 CGGCGAGAGGATAAGGGAAA 59.249 55.000 0.00 0.00 0.00 3.13
1974 2046 0.824182 AGACGGCGAGAGGATAAGGG 60.824 60.000 16.62 0.00 0.00 3.95
1998 2071 2.097036 GTTTATTTGGGGAGGAACGGG 58.903 52.381 0.00 0.00 0.00 5.28
2004 2077 2.760650 GGCAAGAGTTTATTTGGGGAGG 59.239 50.000 0.00 0.00 0.00 4.30
2018 2091 4.208632 GGTCATCACCGGCAAGAG 57.791 61.111 0.00 0.00 31.06 2.85
2027 2100 0.108804 ACATCGACGGTGGTCATCAC 60.109 55.000 13.58 0.00 43.61 3.06
2048 2121 3.381983 TGGATGACGGCTGCTCGT 61.382 61.111 14.35 14.35 46.83 4.18
2058 2131 2.516930 CGGGGGCATGTGGATGAC 60.517 66.667 0.00 0.00 36.78 3.06
2150 2298 4.892965 AAGCTGGGTTGCCGCACA 62.893 61.111 0.00 0.00 0.00 4.57
2172 2320 1.367346 TTGAAGCACCCTATCCCACA 58.633 50.000 0.00 0.00 0.00 4.17
2194 2342 1.376683 TTGTAGCATGGTCACCGCC 60.377 57.895 0.00 0.00 0.00 6.13
2198 2346 1.794222 GCCGTTGTAGCATGGTCAC 59.206 57.895 0.00 0.00 0.00 3.67
2199 2347 1.739929 CGCCGTTGTAGCATGGTCA 60.740 57.895 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.