Multiple sequence alignment - TraesCS2A01G512500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G512500 chr2A 100.000 5127 0 0 1 5127 737426702 737431828 0.000000e+00 9468.0
1 TraesCS2A01G512500 chr2A 95.429 175 7 1 4572 4746 737451297 737451470 1.410000e-70 278.0
2 TraesCS2A01G512500 chr2A 92.169 166 10 3 4888 5051 737451540 737451704 1.110000e-56 231.0
3 TraesCS2A01G512500 chr2A 88.024 167 10 6 2 158 58381563 58381729 6.780000e-44 189.0
4 TraesCS2A01G512500 chr2A 90.517 116 4 3 4479 4588 737450474 737450588 4.140000e-31 147.0
5 TraesCS2A01G512500 chr2D 90.834 3142 167 47 196 3273 605934500 605937584 0.000000e+00 4095.0
6 TraesCS2A01G512500 chr2D 90.518 1487 84 20 3287 4746 605937765 605939221 0.000000e+00 1912.0
7 TraesCS2A01G512500 chr2D 89.723 253 20 4 196 445 605921365 605921614 8.280000e-83 318.0
8 TraesCS2A01G512500 chr2B 91.560 2654 117 49 672 3269 736786829 736789431 0.000000e+00 3561.0
9 TraesCS2A01G512500 chr2B 92.789 1470 75 11 3287 4746 736790008 736791456 0.000000e+00 2098.0
10 TraesCS2A01G512500 chr2B 93.066 274 12 4 4479 4746 736853462 736853734 1.340000e-105 394.0
11 TraesCS2A01G512500 chr2B 92.701 274 13 4 4479 4746 736846022 736846294 6.230000e-104 388.0
12 TraesCS2A01G512500 chr2B 82.857 420 33 16 184 576 736786275 736786682 1.770000e-89 340.0
13 TraesCS2A01G512500 chr2B 90.148 203 15 4 4922 5124 736858639 736858836 5.090000e-65 259.0
14 TraesCS2A01G512500 chr2B 98.039 51 1 0 4747 4797 245112825 245112775 7.070000e-14 89.8
15 TraesCS2A01G512500 chr7B 90.419 167 7 6 1 158 275464360 275464526 1.450000e-50 211.0
16 TraesCS2A01G512500 chr7B 89.744 156 10 3 9 158 641370721 641370566 1.460000e-45 195.0
17 TraesCS2A01G512500 chr7B 98.214 56 1 0 4747 4802 17615924 17615869 1.170000e-16 99.0
18 TraesCS2A01G512500 chr1A 90.419 167 5 8 2 158 469648513 469648678 5.200000e-50 209.0
19 TraesCS2A01G512500 chr1A 87.574 169 10 8 1 158 513364451 513364283 8.770000e-43 185.0
20 TraesCS2A01G512500 chr3A 89.881 168 7 6 1 158 641808912 641809079 1.870000e-49 207.0
21 TraesCS2A01G512500 chr3A 89.172 157 10 3 9 158 642708289 642708445 6.780000e-44 189.0
22 TraesCS2A01G512500 chr3B 89.744 156 9 2 10 158 807155473 807155628 5.240000e-45 193.0
23 TraesCS2A01G512500 chr5A 89.610 154 9 2 12 158 367755829 367755676 6.780000e-44 189.0
24 TraesCS2A01G512500 chr6B 87.273 110 14 0 2445 2554 719860082 719860191 5.390000e-25 126.0
25 TraesCS2A01G512500 chr6D 85.470 117 17 0 2441 2557 470965764 470965648 6.970000e-24 122.0
26 TraesCS2A01G512500 chr6A 85.470 117 17 0 2438 2554 615773296 615773412 6.970000e-24 122.0
27 TraesCS2A01G512500 chr7D 98.039 51 1 0 4746 4796 42518938 42518988 7.070000e-14 89.8
28 TraesCS2A01G512500 chr7D 96.296 54 2 0 4745 4798 526381890 526381943 7.070000e-14 89.8
29 TraesCS2A01G512500 chr5D 98.039 51 1 0 4747 4797 478806130 478806180 7.070000e-14 89.8
30 TraesCS2A01G512500 chr4B 96.296 54 2 0 4747 4800 468178293 468178346 7.070000e-14 89.8
31 TraesCS2A01G512500 chr4B 96.154 52 2 0 4746 4797 26483605 26483554 9.150000e-13 86.1
32 TraesCS2A01G512500 chr1D 96.154 52 2 0 4747 4798 439594301 439594250 9.150000e-13 86.1
33 TraesCS2A01G512500 chr1B 94.545 55 3 0 4741 4795 668105458 668105512 9.150000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G512500 chr2A 737426702 737431828 5126 False 9468.000000 9468 100.000000 1 5127 1 chr2A.!!$F2 5126
1 TraesCS2A01G512500 chr2A 737450474 737451704 1230 False 218.666667 278 92.705000 4479 5051 3 chr2A.!!$F3 572
2 TraesCS2A01G512500 chr2D 605934500 605939221 4721 False 3003.500000 4095 90.676000 196 4746 2 chr2D.!!$F2 4550
3 TraesCS2A01G512500 chr2B 736786275 736791456 5181 False 1999.666667 3561 89.068667 184 4746 3 chr2B.!!$F4 4562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.036199 TTTATTCACGTCCACCCCGG 60.036 55.0 0.0 0.0 0.00 5.73 F
1047 1210 0.178935 CTCTCCCCATCCTCCTCCTC 60.179 65.0 0.0 0.0 0.00 3.71 F
2856 3040 0.038801 GCTGGTGCTTTTTCTGCCTC 60.039 55.0 0.0 0.0 36.03 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2167 0.669625 AAACGAGAAGTACGGCCAGC 60.670 55.0 2.24 0.0 34.93 4.85 R
2958 3142 0.251742 CTGCAAGGGGTCCATTCCAA 60.252 55.0 0.00 0.0 0.00 3.53 R
4854 6390 0.038166 GCCCCAGGAAACACATCTCA 59.962 55.0 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.810959 TTTTATTCACGTCCACCCCG 58.189 50.000 0.00 0.00 0.00 5.73
32 33 0.036199 TTTATTCACGTCCACCCCGG 60.036 55.000 0.00 0.00 0.00 5.73
33 34 0.903924 TTATTCACGTCCACCCCGGA 60.904 55.000 0.73 0.00 43.61 5.14
40 41 2.605295 TCCACCCCGGACACGATT 60.605 61.111 0.73 0.00 44.60 3.34
41 42 2.218454 TCCACCCCGGACACGATTT 61.218 57.895 0.73 0.00 44.60 2.17
42 43 2.038269 CCACCCCGGACACGATTTG 61.038 63.158 0.73 0.00 44.60 2.32
43 44 2.038269 CACCCCGGACACGATTTGG 61.038 63.158 0.73 0.00 44.60 3.28
44 45 2.437716 CCCCGGACACGATTTGGG 60.438 66.667 0.73 0.00 44.60 4.12
45 46 2.437716 CCCGGACACGATTTGGGG 60.438 66.667 0.73 0.00 44.60 4.96
46 47 2.349755 CCGGACACGATTTGGGGT 59.650 61.111 0.00 0.00 44.60 4.95
47 48 2.038269 CCGGACACGATTTGGGGTG 61.038 63.158 0.00 0.00 44.60 4.61
48 49 2.686816 CGGACACGATTTGGGGTGC 61.687 63.158 0.00 0.00 44.60 5.01
49 50 2.686816 GGACACGATTTGGGGTGCG 61.687 63.158 0.00 0.00 37.68 5.34
50 51 2.671619 ACACGATTTGGGGTGCGG 60.672 61.111 0.00 0.00 37.68 5.69
51 52 4.114997 CACGATTTGGGGTGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
87 88 3.486263 CGACCCATCGGACAAAGC 58.514 61.111 0.00 0.00 44.99 3.51
88 89 2.106683 CGACCCATCGGACAAAGCC 61.107 63.158 0.00 0.00 44.99 4.35
115 116 2.749839 CATCGGCGCCCCAAAGAA 60.750 61.111 23.46 0.00 0.00 2.52
116 117 2.034999 ATCGGCGCCCCAAAGAAA 59.965 55.556 23.46 0.00 0.00 2.52
117 118 2.340328 ATCGGCGCCCCAAAGAAAC 61.340 57.895 23.46 0.00 0.00 2.78
118 119 3.291383 CGGCGCCCCAAAGAAACA 61.291 61.111 23.46 0.00 0.00 2.83
119 120 2.851071 CGGCGCCCCAAAGAAACAA 61.851 57.895 23.46 0.00 0.00 2.83
120 121 1.443828 GGCGCCCCAAAGAAACAAA 59.556 52.632 18.11 0.00 0.00 2.83
121 122 0.179070 GGCGCCCCAAAGAAACAAAA 60.179 50.000 18.11 0.00 0.00 2.44
122 123 1.542328 GGCGCCCCAAAGAAACAAAAT 60.542 47.619 18.11 0.00 0.00 1.82
123 124 1.798223 GCGCCCCAAAGAAACAAAATC 59.202 47.619 0.00 0.00 0.00 2.17
124 125 2.412870 CGCCCCAAAGAAACAAAATCC 58.587 47.619 0.00 0.00 0.00 3.01
125 126 2.412870 GCCCCAAAGAAACAAAATCCG 58.587 47.619 0.00 0.00 0.00 4.18
126 127 2.870035 GCCCCAAAGAAACAAAATCCGG 60.870 50.000 0.00 0.00 0.00 5.14
127 128 2.412870 CCCAAAGAAACAAAATCCGGC 58.587 47.619 0.00 0.00 0.00 6.13
128 129 2.412870 CCAAAGAAACAAAATCCGGCC 58.587 47.619 0.00 0.00 0.00 6.13
129 130 2.224161 CCAAAGAAACAAAATCCGGCCA 60.224 45.455 2.24 0.00 0.00 5.36
130 131 3.462021 CAAAGAAACAAAATCCGGCCAA 58.538 40.909 2.24 0.00 0.00 4.52
131 132 4.064388 CAAAGAAACAAAATCCGGCCAAT 58.936 39.130 2.24 0.00 0.00 3.16
132 133 3.592898 AGAAACAAAATCCGGCCAATC 57.407 42.857 2.24 0.00 0.00 2.67
133 134 2.233676 AGAAACAAAATCCGGCCAATCC 59.766 45.455 2.24 0.00 0.00 3.01
134 135 1.638529 AACAAAATCCGGCCAATCCA 58.361 45.000 2.24 0.00 34.01 3.41
135 136 1.185315 ACAAAATCCGGCCAATCCAG 58.815 50.000 2.24 0.00 34.01 3.86
136 137 1.272425 ACAAAATCCGGCCAATCCAGA 60.272 47.619 2.24 0.00 34.01 3.86
137 138 1.134946 CAAAATCCGGCCAATCCAGAC 59.865 52.381 2.24 0.00 34.01 3.51
138 139 0.748005 AAATCCGGCCAATCCAGACG 60.748 55.000 2.24 0.00 34.01 4.18
139 140 1.910580 AATCCGGCCAATCCAGACGT 61.911 55.000 2.24 0.00 34.01 4.34
140 141 2.311688 ATCCGGCCAATCCAGACGTC 62.312 60.000 7.70 7.70 34.01 4.34
141 142 2.511600 CGGCCAATCCAGACGTCC 60.512 66.667 13.01 0.00 34.01 4.79
142 143 2.511600 GGCCAATCCAGACGTCCG 60.512 66.667 13.01 0.70 34.01 4.79
143 144 2.264794 GCCAATCCAGACGTCCGT 59.735 61.111 13.01 0.00 0.00 4.69
144 145 1.375523 GCCAATCCAGACGTCCGTT 60.376 57.895 13.01 0.00 0.00 4.44
145 146 0.953960 GCCAATCCAGACGTCCGTTT 60.954 55.000 13.01 1.38 0.00 3.60
146 147 0.796312 CCAATCCAGACGTCCGTTTG 59.204 55.000 13.01 13.25 0.00 2.93
148 149 0.321298 AATCCAGACGTCCGTTTGGG 60.321 55.000 23.87 12.49 46.57 4.12
149 150 1.189524 ATCCAGACGTCCGTTTGGGA 61.190 55.000 23.87 16.49 46.57 4.37
178 179 4.748798 CCACCTGGGCTCCCTCCT 62.749 72.222 6.50 0.00 36.94 3.69
179 180 2.368594 CACCTGGGCTCCCTCCTA 59.631 66.667 6.50 0.00 36.94 2.94
180 181 2.066999 CACCTGGGCTCCCTCCTAC 61.067 68.421 6.50 0.00 36.94 3.18
181 182 2.840102 CCTGGGCTCCCTCCTACG 60.840 72.222 6.50 0.00 36.94 3.51
182 183 2.840102 CTGGGCTCCCTCCTACGG 60.840 72.222 6.50 0.00 36.94 4.02
183 184 3.680196 TGGGCTCCCTCCTACGGT 61.680 66.667 6.50 0.00 36.94 4.83
184 185 3.155167 GGGCTCCCTCCTACGGTG 61.155 72.222 0.00 0.00 0.00 4.94
185 186 3.155167 GGCTCCCTCCTACGGTGG 61.155 72.222 0.00 0.00 36.23 4.61
186 187 2.043248 GCTCCCTCCTACGGTGGA 60.043 66.667 2.68 0.00 38.51 4.02
187 188 1.457831 GCTCCCTCCTACGGTGGAT 60.458 63.158 2.68 0.00 38.51 3.41
188 189 1.465200 GCTCCCTCCTACGGTGGATC 61.465 65.000 2.68 0.00 38.51 3.36
189 190 1.152819 TCCCTCCTACGGTGGATCG 60.153 63.158 2.68 0.00 38.51 3.69
190 191 1.455217 CCCTCCTACGGTGGATCGT 60.455 63.158 2.68 0.00 45.88 3.73
198 199 3.823330 GGTGGATCGTCGTCGGCT 61.823 66.667 1.55 0.00 37.69 5.52
285 286 2.045731 AAACGTATGGGCCACCGG 60.046 61.111 25.54 13.66 40.75 5.28
360 366 3.420943 ACGAAAGTGTGTGCTGCC 58.579 55.556 0.00 0.00 46.97 4.85
373 379 3.481903 CTGCCGCTGTGCTGTACG 61.482 66.667 0.00 0.00 0.00 3.67
397 403 3.711937 GTGTTTTACCACGAGGGGT 57.288 52.632 3.29 1.43 45.10 4.95
398 404 1.232119 GTGTTTTACCACGAGGGGTG 58.768 55.000 7.39 0.00 46.57 4.61
526 590 1.349688 TGGCACTATTCGTTTCCCTGT 59.650 47.619 0.00 0.00 0.00 4.00
548 629 1.376683 GGCCGTTGGATGTACTGCA 60.377 57.895 0.00 0.00 0.00 4.41
596 693 1.305219 AATGTTGGTGGCGATGACGG 61.305 55.000 0.00 0.00 40.15 4.79
603 700 4.899239 GGCGATGACGGGCTGAGG 62.899 72.222 0.00 0.00 40.15 3.86
604 701 4.148825 GCGATGACGGGCTGAGGT 62.149 66.667 0.00 0.00 40.15 3.85
624 723 1.216977 CAAGCGACCGATGTACCCA 59.783 57.895 0.00 0.00 0.00 4.51
633 732 1.487142 CCGATGTACCCATAACCCACA 59.513 52.381 0.00 0.00 0.00 4.17
653 754 5.060816 CCACATTGCATCACGTGAAAATAAC 59.939 40.000 24.13 8.89 0.00 1.89
662 763 5.309638 TCACGTGAAAATAACCCAATCTGA 58.690 37.500 17.62 0.00 0.00 3.27
735 867 1.076332 GCGTGTAGTTTAGCCACCTG 58.924 55.000 0.00 0.00 0.00 4.00
753 885 3.534160 CGTGAGCGTAACTGCGTT 58.466 55.556 0.02 0.02 40.67 4.84
754 886 1.850640 CGTGAGCGTAACTGCGTTT 59.149 52.632 0.00 0.00 40.67 3.60
755 887 1.054574 CGTGAGCGTAACTGCGTTTA 58.945 50.000 0.00 0.00 40.67 2.01
756 888 1.452773 CGTGAGCGTAACTGCGTTTAA 59.547 47.619 0.00 0.00 40.67 1.52
757 889 2.097299 CGTGAGCGTAACTGCGTTTAAA 60.097 45.455 0.00 0.00 40.67 1.52
880 1028 2.852075 GGGAGTCACACCCACCCA 60.852 66.667 5.22 0.00 46.05 4.51
884 1032 2.203294 GTCACACCCACCCACACC 60.203 66.667 0.00 0.00 0.00 4.16
971 1134 0.323451 GAAATCCACCACCTCCCCAC 60.323 60.000 0.00 0.00 0.00 4.61
980 1143 4.293671 CCTCCCCACCCCGCAAAA 62.294 66.667 0.00 0.00 0.00 2.44
1041 1204 1.152139 CCTCCCTCTCCCCATCCTC 60.152 68.421 0.00 0.00 0.00 3.71
1042 1205 1.152139 CTCCCTCTCCCCATCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1043 1206 1.630333 TCCCTCTCCCCATCCTCCT 60.630 63.158 0.00 0.00 0.00 3.69
1044 1207 1.152139 CCCTCTCCCCATCCTCCTC 60.152 68.421 0.00 0.00 0.00 3.71
1045 1208 1.152139 CCTCTCCCCATCCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1046 1209 1.673928 CCTCTCCCCATCCTCCTCCT 61.674 65.000 0.00 0.00 0.00 3.69
1047 1210 0.178935 CTCTCCCCATCCTCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
1048 1211 1.152139 CTCCCCATCCTCCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1049 1212 1.630333 TCCCCATCCTCCTCCTCCT 60.630 63.158 0.00 0.00 0.00 3.69
1050 1213 1.152139 CCCCATCCTCCTCCTCCTC 60.152 68.421 0.00 0.00 0.00 3.71
1051 1214 1.532794 CCCATCCTCCTCCTCCTCG 60.533 68.421 0.00 0.00 0.00 4.63
1052 1215 2.206536 CCATCCTCCTCCTCCTCGC 61.207 68.421 0.00 0.00 0.00 5.03
1695 1864 1.495069 GTCGCTCAAGCTGCTGAAC 59.505 57.895 1.35 0.00 39.32 3.18
2131 2300 0.617413 CAGCAGGGAGATGGACAACT 59.383 55.000 0.00 0.00 0.00 3.16
2358 2527 4.778143 GGCCGGCTCGTGGTCATT 62.778 66.667 28.56 0.00 0.00 2.57
2571 2740 0.462759 GTAAGCTCCATTGCTCGGCT 60.463 55.000 0.00 0.00 43.24 5.52
2582 2751 1.968540 GCTCGGCTTGTTGCTCCTT 60.969 57.895 0.00 0.00 42.39 3.36
2593 2762 5.877564 GCTTGTTGCTCCTTAGAGTAGATTT 59.122 40.000 0.00 0.00 42.59 2.17
2604 2773 6.349363 CCTTAGAGTAGATTTTTGGGTTGCAC 60.349 42.308 0.00 0.00 0.00 4.57
2609 2778 7.286775 AGAGTAGATTTTTGGGTTGCACTTAAA 59.713 33.333 0.00 0.00 0.00 1.52
2610 2779 7.207383 AGTAGATTTTTGGGTTGCACTTAAAC 58.793 34.615 0.00 0.00 0.00 2.01
2611 2780 5.983540 AGATTTTTGGGTTGCACTTAAACA 58.016 33.333 0.00 0.00 0.00 2.83
2614 2783 7.555914 AGATTTTTGGGTTGCACTTAAACATTT 59.444 29.630 0.00 0.00 0.00 2.32
2615 2784 7.454260 TTTTTGGGTTGCACTTAAACATTTT 57.546 28.000 0.00 0.00 0.00 1.82
2616 2785 6.670077 TTTGGGTTGCACTTAAACATTTTC 57.330 33.333 0.00 0.00 0.00 2.29
2647 2816 3.441572 ACACTTCTGATTGCTGCCATTAC 59.558 43.478 0.00 0.00 0.00 1.89
2659 2828 3.181493 GCTGCCATTACACTTGAATCTGG 60.181 47.826 0.00 0.00 0.00 3.86
2663 2832 4.142381 GCCATTACACTTGAATCTGGAACC 60.142 45.833 0.00 0.00 0.00 3.62
2671 2840 3.199442 TGAATCTGGAACCCTAGTGGA 57.801 47.619 4.45 0.00 38.00 4.02
2755 2931 5.343325 GCAACGAATTGAAATTCAGAAGACC 59.657 40.000 14.41 0.00 43.85 3.85
2758 2934 5.091431 CGAATTGAAATTCAGAAGACCTGC 58.909 41.667 14.41 0.00 43.85 4.85
2774 2950 0.882042 CTGCCACGTGAAACTCTGCT 60.882 55.000 19.30 0.00 31.75 4.24
2805 2982 1.276989 TGTACCTTGGGTGGAACGATC 59.723 52.381 0.00 0.00 38.12 3.69
2840 3024 2.093890 TGCTGTATGGGTTGATTGCTG 58.906 47.619 0.00 0.00 0.00 4.41
2856 3040 0.038801 GCTGGTGCTTTTTCTGCCTC 60.039 55.000 0.00 0.00 36.03 4.70
2884 3068 5.921976 TCAATAAACAAAGCAAGCAGATGTG 59.078 36.000 0.00 0.00 0.00 3.21
2917 3101 0.530650 CCAATCTAGCACGCGACCAT 60.531 55.000 15.93 0.00 0.00 3.55
2958 3142 6.215636 ACATTAGTAGGGTCTCATCCTTTGTT 59.784 38.462 0.00 0.00 35.92 2.83
2973 3157 2.785357 TTGTTTGGAATGGACCCCTT 57.215 45.000 0.00 0.00 0.00 3.95
2998 3187 5.674569 GCAGTAAGCCAGTAACATGTGATTG 60.675 44.000 0.00 0.00 37.23 2.67
2999 3188 3.855689 AAGCCAGTAACATGTGATTGC 57.144 42.857 0.00 0.00 0.00 3.56
3000 3189 3.077484 AGCCAGTAACATGTGATTGCT 57.923 42.857 0.00 1.50 0.00 3.91
3001 3190 2.751259 AGCCAGTAACATGTGATTGCTG 59.249 45.455 0.00 2.94 38.91 4.41
3002 3191 2.489329 GCCAGTAACATGTGATTGCTGT 59.511 45.455 0.00 0.00 37.89 4.40
3062 3251 8.860088 GGAAGCCATGAATACAATTATAAAGGT 58.140 33.333 0.00 0.00 0.00 3.50
3084 3286 3.429372 AAGGGTCAAGGCGGCAACA 62.429 57.895 13.08 0.00 0.00 3.33
3093 3295 0.954452 AGGCGGCAACAAAGAGAAAG 59.046 50.000 13.08 0.00 0.00 2.62
3124 3326 1.028905 TTGCCGACCTTTGTTTGAGG 58.971 50.000 0.00 0.00 40.24 3.86
3192 3402 5.308014 ACTGCTCATGTGATGTTTTACAGA 58.692 37.500 0.00 0.00 0.00 3.41
3284 3882 6.904498 TGGATGATAAATTAATTTACGGCGG 58.096 36.000 20.21 0.00 35.31 6.13
3285 3883 6.072397 TGGATGATAAATTAATTTACGGCGGG 60.072 38.462 20.21 0.00 35.31 6.13
3299 4072 2.093128 ACGGCGGGAGTAGAAATTGATT 60.093 45.455 13.24 0.00 0.00 2.57
3343 4116 5.753438 TGATAGCGAGCTTATTCGTTTGATT 59.247 36.000 1.86 0.00 42.38 2.57
3358 4131 6.796426 TCGTTTGATTTGTTGGTTATGTTCA 58.204 32.000 0.00 0.00 0.00 3.18
3360 4133 7.923344 TCGTTTGATTTGTTGGTTATGTTCAAT 59.077 29.630 0.00 0.00 0.00 2.57
3404 4182 5.615289 ACTCCAGCCAAATGACATAGTATC 58.385 41.667 0.00 0.00 0.00 2.24
3413 4195 7.012327 GCCAAATGACATAGTATCTTGTAAGCA 59.988 37.037 0.00 0.00 0.00 3.91
3425 4207 9.973450 AGTATCTTGTAAGCATGTTATACAGAG 57.027 33.333 0.00 3.54 31.72 3.35
3455 4237 6.706270 CCACAAGTTGGTACATATCAGGATAC 59.294 42.308 7.96 0.00 41.10 2.24
3469 4251 4.780815 TCAGGATACCAACATAGCCTTTG 58.219 43.478 0.00 0.00 38.96 2.77
3479 4261 6.437162 ACCAACATAGCCTTTGTACATTCATT 59.563 34.615 0.00 0.00 0.00 2.57
3518 4300 0.746659 GAACCTTTTGCTGCTGGTGT 59.253 50.000 0.00 0.00 32.53 4.16
3540 4322 7.414436 GTGTTTCACTGTTATTAGCTTGACAA 58.586 34.615 0.00 0.00 0.00 3.18
3541 4323 7.587757 GTGTTTCACTGTTATTAGCTTGACAAG 59.412 37.037 11.02 11.02 0.00 3.16
3637 4419 2.914097 GTTGCACAGGGCCTTGCT 60.914 61.111 28.49 0.00 43.89 3.91
3655 4437 3.216800 TGCTTACATTCATCAGGCATCC 58.783 45.455 0.00 0.00 0.00 3.51
3691 4473 4.156739 GGAAACATCAAGTCCTCCAATGTC 59.843 45.833 0.00 0.00 34.05 3.06
3692 4474 4.647564 AACATCAAGTCCTCCAATGTCT 57.352 40.909 0.00 0.00 30.56 3.41
3694 4476 5.762179 ACATCAAGTCCTCCAATGTCTTA 57.238 39.130 0.00 0.00 0.00 2.10
3712 4494 6.411376 TGTCTTACTTGGTTCAGACTTTGAA 58.589 36.000 0.00 0.00 43.40 2.69
3736 4518 1.071471 CCTCACCGACAACTGCCTT 59.929 57.895 0.00 0.00 0.00 4.35
3772 4554 3.667497 TCAGCAGAAGTCAAAGACGAT 57.333 42.857 0.00 0.00 37.67 3.73
3775 4557 1.201855 GCAGAAGTCAAAGACGATGCG 60.202 52.381 0.00 0.00 37.67 4.73
3826 4608 0.109342 ACAGAAGGCTCACACCCAAG 59.891 55.000 0.00 0.00 0.00 3.61
3844 4626 3.997021 CCAAGTCAGACGTCTATGCTTTT 59.003 43.478 19.57 4.58 0.00 2.27
3859 4641 1.747924 GCTTTTGGCATCCTTCTCCTC 59.252 52.381 0.00 0.00 41.35 3.71
3868 4650 0.106918 TCCTTCTCCTCGAGCTCCTC 60.107 60.000 6.99 0.00 0.00 3.71
3898 4680 2.690778 GCCGCTTGAGCATTCGGTT 61.691 57.895 3.65 0.00 43.45 4.44
4080 4862 1.200948 GGTGAAGGAAGCAGATGCAAC 59.799 52.381 7.68 0.00 45.16 4.17
4100 4882 2.100631 GGTGACAATGAGGACGGCG 61.101 63.158 4.80 4.80 0.00 6.46
4101 4883 1.080093 GTGACAATGAGGACGGCGA 60.080 57.895 16.62 0.00 0.00 5.54
4102 4884 0.460284 GTGACAATGAGGACGGCGAT 60.460 55.000 16.62 0.00 0.00 4.58
4103 4885 0.179111 TGACAATGAGGACGGCGATC 60.179 55.000 16.62 9.31 0.00 3.69
4104 4886 0.103208 GACAATGAGGACGGCGATCT 59.897 55.000 16.62 10.48 0.00 2.75
4105 4887 0.537188 ACAATGAGGACGGCGATCTT 59.463 50.000 16.62 3.55 0.00 2.40
4132 4914 1.134037 ACTAGCGACTCCTAGACCCTG 60.134 57.143 3.44 0.00 38.50 4.45
4196 4979 4.402155 GGTTGATGCATTATCCCAAGTGAA 59.598 41.667 0.00 0.00 34.77 3.18
4208 4991 3.387374 TCCCAAGTGAACAACCGTAGTTA 59.613 43.478 0.00 0.00 33.27 2.24
4209 4992 4.040706 TCCCAAGTGAACAACCGTAGTTAT 59.959 41.667 0.00 0.00 33.27 1.89
4222 5005 4.809426 ACCGTAGTTATATGCAGTTTGCTC 59.191 41.667 2.48 0.00 45.31 4.26
4259 5042 1.142060 TGGAAGGGTGTTAGTGGTGTG 59.858 52.381 0.00 0.00 0.00 3.82
4343 5128 4.478686 AGCATATGTTAGGTTTTCTCCCCT 59.521 41.667 4.29 0.00 34.74 4.79
4344 5129 4.580580 GCATATGTTAGGTTTTCTCCCCTG 59.419 45.833 4.29 0.00 32.08 4.45
4345 5130 3.739401 ATGTTAGGTTTTCTCCCCTGG 57.261 47.619 0.00 0.00 32.08 4.45
4346 5131 2.424793 TGTTAGGTTTTCTCCCCTGGT 58.575 47.619 0.00 0.00 32.08 4.00
4347 5132 2.107552 TGTTAGGTTTTCTCCCCTGGTG 59.892 50.000 0.00 0.00 32.08 4.17
4348 5133 2.107726 GTTAGGTTTTCTCCCCTGGTGT 59.892 50.000 0.00 0.00 32.08 4.16
4349 5134 2.127651 AGGTTTTCTCCCCTGGTGTA 57.872 50.000 0.00 0.00 0.00 2.90
4350 5135 1.703513 AGGTTTTCTCCCCTGGTGTAC 59.296 52.381 0.00 0.00 0.00 2.90
4351 5136 1.271762 GGTTTTCTCCCCTGGTGTACC 60.272 57.143 0.00 0.00 0.00 3.34
4352 5137 1.069775 TTTTCTCCCCTGGTGTACCC 58.930 55.000 0.00 0.00 34.29 3.69
4353 5138 0.843343 TTTCTCCCCTGGTGTACCCC 60.843 60.000 0.00 0.00 34.29 4.95
4466 5251 4.392138 GCCAAAGTCACATAGTACTGGTTC 59.608 45.833 5.39 0.38 0.00 3.62
4746 6282 3.689161 TGTCTGTAGCAATAATGGTGTGC 59.311 43.478 0.00 0.00 37.91 4.57
4747 6283 3.689161 GTCTGTAGCAATAATGGTGTGCA 59.311 43.478 0.00 0.00 40.83 4.57
4748 6284 3.940852 TCTGTAGCAATAATGGTGTGCAG 59.059 43.478 0.00 0.00 40.83 4.41
4749 6285 3.684908 TGTAGCAATAATGGTGTGCAGT 58.315 40.909 0.00 0.00 40.83 4.40
4750 6286 3.439825 TGTAGCAATAATGGTGTGCAGTG 59.560 43.478 0.00 0.00 40.83 3.66
4751 6287 1.820519 AGCAATAATGGTGTGCAGTGG 59.179 47.619 0.00 0.00 40.83 4.00
4752 6288 1.736696 GCAATAATGGTGTGCAGTGGC 60.737 52.381 0.00 0.00 38.19 5.01
4754 6290 1.031571 ATAATGGTGTGCAGTGGCGG 61.032 55.000 0.00 0.00 45.35 6.13
4755 6291 2.118233 TAATGGTGTGCAGTGGCGGA 62.118 55.000 0.00 0.00 45.35 5.54
4756 6292 3.907260 ATGGTGTGCAGTGGCGGAG 62.907 63.158 0.00 0.00 45.35 4.63
4757 6293 4.314440 GGTGTGCAGTGGCGGAGA 62.314 66.667 0.00 0.00 45.35 3.71
4759 6295 1.218047 GTGTGCAGTGGCGGAGATA 59.782 57.895 0.00 0.00 45.35 1.98
4762 6298 2.280457 GCAGTGGCGGAGATAGGC 60.280 66.667 0.00 0.00 0.00 3.93
4767 6303 3.631046 GGCGGAGATAGGCCCCAG 61.631 72.222 0.00 0.00 43.64 4.45
4768 6304 3.631046 GCGGAGATAGGCCCCAGG 61.631 72.222 0.00 0.00 0.00 4.45
4801 6337 2.124983 CCTGGGGCGTGAGATGTG 60.125 66.667 0.00 0.00 0.00 3.21
4802 6338 2.124983 CTGGGGCGTGAGATGTGG 60.125 66.667 0.00 0.00 0.00 4.17
4803 6339 4.408821 TGGGGCGTGAGATGTGGC 62.409 66.667 0.00 0.00 0.00 5.01
4804 6340 4.408821 GGGGCGTGAGATGTGGCA 62.409 66.667 0.00 0.00 0.00 4.92
4805 6341 3.127533 GGGCGTGAGATGTGGCAC 61.128 66.667 11.55 11.55 0.00 5.01
4806 6342 2.046892 GGCGTGAGATGTGGCACT 60.047 61.111 19.83 4.13 32.98 4.40
4809 6345 0.108615 GCGTGAGATGTGGCACTACT 60.109 55.000 19.83 16.82 32.98 2.57
4810 6346 1.633561 CGTGAGATGTGGCACTACTG 58.366 55.000 19.83 3.16 32.98 2.74
4811 6347 1.067565 CGTGAGATGTGGCACTACTGT 60.068 52.381 19.83 1.95 32.98 3.55
4814 6350 2.368548 TGAGATGTGGCACTACTGTGTT 59.631 45.455 19.83 0.00 45.44 3.32
4815 6351 3.181455 TGAGATGTGGCACTACTGTGTTT 60.181 43.478 19.83 0.00 45.44 2.83
4816 6352 3.815401 GAGATGTGGCACTACTGTGTTTT 59.185 43.478 19.83 0.00 45.44 2.43
4817 6353 4.207165 AGATGTGGCACTACTGTGTTTTT 58.793 39.130 19.83 0.00 45.44 1.94
4818 6354 3.773860 TGTGGCACTACTGTGTTTTTG 57.226 42.857 19.83 0.00 45.44 2.44
4819 6355 3.085533 TGTGGCACTACTGTGTTTTTGT 58.914 40.909 19.83 0.00 45.44 2.83
4820 6356 4.262617 TGTGGCACTACTGTGTTTTTGTA 58.737 39.130 19.83 0.00 45.44 2.41
4821 6357 4.884744 TGTGGCACTACTGTGTTTTTGTAT 59.115 37.500 19.83 0.00 45.44 2.29
4822 6358 5.212194 GTGGCACTACTGTGTTTTTGTATG 58.788 41.667 11.13 0.00 45.44 2.39
4823 6359 4.884744 TGGCACTACTGTGTTTTTGTATGT 59.115 37.500 0.00 0.00 45.44 2.29
4824 6360 5.358442 TGGCACTACTGTGTTTTTGTATGTT 59.642 36.000 0.00 0.00 45.44 2.71
4825 6361 5.685511 GGCACTACTGTGTTTTTGTATGTTG 59.314 40.000 0.00 0.00 45.44 3.33
4826 6362 6.262601 GCACTACTGTGTTTTTGTATGTTGT 58.737 36.000 0.00 0.00 45.44 3.32
4827 6363 7.411274 GCACTACTGTGTTTTTGTATGTTGTA 58.589 34.615 0.00 0.00 45.44 2.41
4828 6364 7.586300 GCACTACTGTGTTTTTGTATGTTGTAG 59.414 37.037 0.00 0.00 45.44 2.74
4829 6365 7.586300 CACTACTGTGTTTTTGTATGTTGTAGC 59.414 37.037 0.00 0.00 39.24 3.58
4830 6366 6.443934 ACTGTGTTTTTGTATGTTGTAGCA 57.556 33.333 0.00 0.00 0.00 3.49
4831 6367 6.262601 ACTGTGTTTTTGTATGTTGTAGCAC 58.737 36.000 0.00 0.00 0.00 4.40
4832 6368 6.094881 ACTGTGTTTTTGTATGTTGTAGCACT 59.905 34.615 0.00 0.00 0.00 4.40
4833 6369 7.281324 ACTGTGTTTTTGTATGTTGTAGCACTA 59.719 33.333 0.00 0.00 0.00 2.74
4834 6370 7.411274 TGTGTTTTTGTATGTTGTAGCACTAC 58.589 34.615 0.70 0.70 36.63 2.73
4835 6371 7.281324 TGTGTTTTTGTATGTTGTAGCACTACT 59.719 33.333 9.12 0.00 37.00 2.57
4836 6372 7.586300 GTGTTTTTGTATGTTGTAGCACTACTG 59.414 37.037 9.12 0.00 37.00 2.74
4837 6373 7.281324 TGTTTTTGTATGTTGTAGCACTACTGT 59.719 33.333 9.12 0.00 37.00 3.55
4838 6374 6.779115 TTTGTATGTTGTAGCACTACTGTG 57.221 37.500 9.12 0.00 46.37 3.66
4839 6375 4.816392 TGTATGTTGTAGCACTACTGTGG 58.184 43.478 9.12 0.00 43.97 4.17
4840 6376 2.163818 TGTTGTAGCACTACTGTGGC 57.836 50.000 9.12 0.00 43.97 5.01
4841 6377 1.414550 TGTTGTAGCACTACTGTGGCA 59.585 47.619 9.12 0.00 43.97 4.92
4842 6378 1.798813 GTTGTAGCACTACTGTGGCAC 59.201 52.381 11.55 11.55 43.97 5.01
4843 6379 1.338107 TGTAGCACTACTGTGGCACT 58.662 50.000 19.83 1.37 43.97 4.40
4844 6380 1.000843 TGTAGCACTACTGTGGCACTG 59.999 52.381 21.14 21.14 43.97 3.66
4845 6381 0.037326 TAGCACTACTGTGGCACTGC 60.037 55.000 22.43 20.09 43.97 4.40
4861 6397 4.101448 GCCTGGGGCGTGAGATGT 62.101 66.667 0.00 0.00 39.62 3.06
4862 6398 2.124983 CCTGGGGCGTGAGATGTG 60.125 66.667 0.00 0.00 0.00 3.21
4863 6399 2.665000 CTGGGGCGTGAGATGTGT 59.335 61.111 0.00 0.00 0.00 3.72
4864 6400 1.003355 CTGGGGCGTGAGATGTGTT 60.003 57.895 0.00 0.00 0.00 3.32
4865 6401 0.606401 CTGGGGCGTGAGATGTGTTT 60.606 55.000 0.00 0.00 0.00 2.83
4866 6402 0.605319 TGGGGCGTGAGATGTGTTTC 60.605 55.000 0.00 0.00 0.00 2.78
4867 6403 1.305930 GGGGCGTGAGATGTGTTTCC 61.306 60.000 0.00 0.00 0.00 3.13
4868 6404 0.321653 GGGCGTGAGATGTGTTTCCT 60.322 55.000 0.00 0.00 0.00 3.36
4869 6405 0.798776 GGCGTGAGATGTGTTTCCTG 59.201 55.000 0.00 0.00 0.00 3.86
4870 6406 0.798776 GCGTGAGATGTGTTTCCTGG 59.201 55.000 0.00 0.00 0.00 4.45
4871 6407 1.442769 CGTGAGATGTGTTTCCTGGG 58.557 55.000 0.00 0.00 0.00 4.45
4872 6408 1.826385 GTGAGATGTGTTTCCTGGGG 58.174 55.000 0.00 0.00 0.00 4.96
4873 6409 0.038166 TGAGATGTGTTTCCTGGGGC 59.962 55.000 0.00 0.00 0.00 5.80
4874 6410 1.002134 AGATGTGTTTCCTGGGGCG 60.002 57.895 0.00 0.00 0.00 6.13
4875 6411 1.303317 GATGTGTTTCCTGGGGCGT 60.303 57.895 0.00 0.00 0.00 5.68
4876 6412 1.586154 GATGTGTTTCCTGGGGCGTG 61.586 60.000 0.00 0.00 0.00 5.34
4877 6413 2.063015 ATGTGTTTCCTGGGGCGTGA 62.063 55.000 0.00 0.00 0.00 4.35
4878 6414 1.966451 GTGTTTCCTGGGGCGTGAG 60.966 63.158 0.00 0.00 0.00 3.51
4879 6415 2.359975 GTTTCCTGGGGCGTGAGG 60.360 66.667 0.00 0.00 0.00 3.86
4889 6425 2.551270 GCGTGAGGCGTGAAACAG 59.449 61.111 0.00 0.00 43.66 3.16
4893 6429 0.304705 GTGAGGCGTGAAACAGTGTG 59.695 55.000 0.00 0.00 35.74 3.82
4920 6456 1.203038 TGGATCTGGCCACAACAATGT 60.203 47.619 0.00 0.00 41.61 2.71
4979 6517 2.430382 TTTCACGCCAGTCCCGTCTC 62.430 60.000 0.00 0.00 36.69 3.36
4980 6518 4.778415 CACGCCAGTCCCGTCTCG 62.778 72.222 0.00 0.00 36.69 4.04
4989 6527 1.068417 TCCCGTCTCGTGTTTGTGG 59.932 57.895 0.00 0.00 0.00 4.17
5051 6589 1.225855 ACGCACATACACACCACTTG 58.774 50.000 0.00 0.00 0.00 3.16
5052 6590 1.202592 ACGCACATACACACCACTTGA 60.203 47.619 0.00 0.00 0.00 3.02
5053 6591 1.194547 CGCACATACACACCACTTGAC 59.805 52.381 0.00 0.00 0.00 3.18
5054 6592 1.535462 GCACATACACACCACTTGACC 59.465 52.381 0.00 0.00 0.00 4.02
5055 6593 2.844946 CACATACACACCACTTGACCA 58.155 47.619 0.00 0.00 0.00 4.02
5056 6594 2.548057 CACATACACACCACTTGACCAC 59.452 50.000 0.00 0.00 0.00 4.16
5057 6595 2.438021 ACATACACACCACTTGACCACT 59.562 45.455 0.00 0.00 0.00 4.00
5058 6596 3.644265 ACATACACACCACTTGACCACTA 59.356 43.478 0.00 0.00 0.00 2.74
5059 6597 4.286032 ACATACACACCACTTGACCACTAT 59.714 41.667 0.00 0.00 0.00 2.12
5060 6598 5.482526 ACATACACACCACTTGACCACTATA 59.517 40.000 0.00 0.00 0.00 1.31
5061 6599 4.267349 ACACACCACTTGACCACTATAC 57.733 45.455 0.00 0.00 0.00 1.47
5062 6600 3.644265 ACACACCACTTGACCACTATACA 59.356 43.478 0.00 0.00 0.00 2.29
5063 6601 4.286032 ACACACCACTTGACCACTATACAT 59.714 41.667 0.00 0.00 0.00 2.29
5064 6602 5.482526 ACACACCACTTGACCACTATACATA 59.517 40.000 0.00 0.00 0.00 2.29
5065 6603 5.810587 CACACCACTTGACCACTATACATAC 59.189 44.000 0.00 0.00 0.00 2.39
5066 6604 5.482526 ACACCACTTGACCACTATACATACA 59.517 40.000 0.00 0.00 0.00 2.29
5067 6605 6.156256 ACACCACTTGACCACTATACATACAT 59.844 38.462 0.00 0.00 0.00 2.29
5068 6606 7.047891 CACCACTTGACCACTATACATACATT 58.952 38.462 0.00 0.00 0.00 2.71
5069 6607 7.224753 CACCACTTGACCACTATACATACATTC 59.775 40.741 0.00 0.00 0.00 2.67
5070 6608 7.093068 ACCACTTGACCACTATACATACATTCA 60.093 37.037 0.00 0.00 0.00 2.57
5071 6609 7.768582 CCACTTGACCACTATACATACATTCAA 59.231 37.037 0.00 0.00 0.00 2.69
5072 6610 8.604035 CACTTGACCACTATACATACATTCAAC 58.396 37.037 0.00 0.00 0.00 3.18
5073 6611 8.540388 ACTTGACCACTATACATACATTCAACT 58.460 33.333 0.00 0.00 0.00 3.16
5074 6612 8.716646 TTGACCACTATACATACATTCAACTG 57.283 34.615 0.00 0.00 0.00 3.16
5075 6613 7.272244 TGACCACTATACATACATTCAACTGG 58.728 38.462 0.00 0.00 0.00 4.00
5076 6614 7.125053 TGACCACTATACATACATTCAACTGGA 59.875 37.037 0.00 0.00 0.00 3.86
5077 6615 7.857456 ACCACTATACATACATTCAACTGGAA 58.143 34.615 0.00 0.00 40.46 3.53
5079 6617 9.342308 CCACTATACATACATTCAACTGGAATT 57.658 33.333 0.00 0.00 43.76 2.17
5081 6619 9.905713 ACTATACATACATTCAACTGGAATTGT 57.094 29.630 0.00 0.00 43.76 2.71
5086 6624 9.023962 ACATACATTCAACTGGAATTGTATTGT 57.976 29.630 0.00 0.00 43.76 2.71
5087 6625 9.292846 CATACATTCAACTGGAATTGTATTGTG 57.707 33.333 0.00 0.00 43.76 3.33
5088 6626 7.288810 ACATTCAACTGGAATTGTATTGTGT 57.711 32.000 0.00 0.00 43.76 3.72
5089 6627 7.725251 ACATTCAACTGGAATTGTATTGTGTT 58.275 30.769 0.00 0.00 43.76 3.32
5090 6628 8.855110 ACATTCAACTGGAATTGTATTGTGTTA 58.145 29.630 0.00 0.00 43.76 2.41
5091 6629 9.345517 CATTCAACTGGAATTGTATTGTGTTAG 57.654 33.333 0.00 0.00 43.76 2.34
5092 6630 8.684386 TTCAACTGGAATTGTATTGTGTTAGA 57.316 30.769 0.00 0.00 0.00 2.10
5093 6631 8.684386 TCAACTGGAATTGTATTGTGTTAGAA 57.316 30.769 0.00 0.00 0.00 2.10
5094 6632 9.126151 TCAACTGGAATTGTATTGTGTTAGAAA 57.874 29.630 0.00 0.00 0.00 2.52
5095 6633 9.398170 CAACTGGAATTGTATTGTGTTAGAAAG 57.602 33.333 0.00 0.00 0.00 2.62
5096 6634 8.918202 ACTGGAATTGTATTGTGTTAGAAAGA 57.082 30.769 0.00 0.00 0.00 2.52
5097 6635 9.349713 ACTGGAATTGTATTGTGTTAGAAAGAA 57.650 29.630 0.00 0.00 0.00 2.52
5098 6636 9.612620 CTGGAATTGTATTGTGTTAGAAAGAAC 57.387 33.333 0.00 0.00 0.00 3.01
5099 6637 9.126151 TGGAATTGTATTGTGTTAGAAAGAACA 57.874 29.630 0.00 0.00 36.98 3.18
5110 6648 7.658179 TGTTAGAAAGAACACTGATCACATC 57.342 36.000 0.00 0.00 34.40 3.06
5111 6649 7.445121 TGTTAGAAAGAACACTGATCACATCT 58.555 34.615 0.00 0.00 34.40 2.90
5112 6650 7.600375 TGTTAGAAAGAACACTGATCACATCTC 59.400 37.037 0.00 0.00 34.40 2.75
5113 6651 5.486526 AGAAAGAACACTGATCACATCTCC 58.513 41.667 0.00 0.00 0.00 3.71
5114 6652 5.248020 AGAAAGAACACTGATCACATCTCCT 59.752 40.000 0.00 0.00 0.00 3.69
5115 6653 6.438741 AGAAAGAACACTGATCACATCTCCTA 59.561 38.462 0.00 0.00 0.00 2.94
5116 6654 6.611613 AAGAACACTGATCACATCTCCTAA 57.388 37.500 0.00 0.00 0.00 2.69
5117 6655 6.805016 AGAACACTGATCACATCTCCTAAT 57.195 37.500 0.00 0.00 0.00 1.73
5118 6656 6.580788 AGAACACTGATCACATCTCCTAATG 58.419 40.000 0.00 0.00 0.00 1.90
5119 6657 6.382282 AGAACACTGATCACATCTCCTAATGA 59.618 38.462 0.00 0.00 0.00 2.57
5120 6658 5.911752 ACACTGATCACATCTCCTAATGAC 58.088 41.667 0.00 0.00 0.00 3.06
5121 6659 5.660417 ACACTGATCACATCTCCTAATGACT 59.340 40.000 0.00 0.00 0.00 3.41
5122 6660 6.183360 ACACTGATCACATCTCCTAATGACTC 60.183 42.308 0.00 0.00 0.00 3.36
5123 6661 5.304101 ACTGATCACATCTCCTAATGACTCC 59.696 44.000 0.00 0.00 0.00 3.85
5124 6662 5.211201 TGATCACATCTCCTAATGACTCCA 58.789 41.667 0.00 0.00 0.00 3.86
5125 6663 5.842874 TGATCACATCTCCTAATGACTCCAT 59.157 40.000 0.00 0.00 33.66 3.41
5126 6664 7.012607 TGATCACATCTCCTAATGACTCCATA 58.987 38.462 0.00 0.00 31.59 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.152830 CGGGGTGGACGTGAATAAAAA 58.847 47.619 0.00 0.00 0.00 1.94
12 13 1.611148 CCGGGGTGGACGTGAATAAAA 60.611 52.381 0.00 0.00 42.00 1.52
13 14 0.036199 CCGGGGTGGACGTGAATAAA 60.036 55.000 0.00 0.00 42.00 1.40
14 15 0.903924 TCCGGGGTGGACGTGAATAA 60.904 55.000 0.00 0.00 43.74 1.40
15 16 1.305129 TCCGGGGTGGACGTGAATA 60.305 57.895 0.00 0.00 43.74 1.75
16 17 2.605295 TCCGGGGTGGACGTGAAT 60.605 61.111 0.00 0.00 43.74 2.57
24 25 2.038269 CAAATCGTGTCCGGGGTGG 61.038 63.158 0.00 0.00 40.09 4.61
25 26 2.038269 CCAAATCGTGTCCGGGGTG 61.038 63.158 0.00 0.00 33.95 4.61
26 27 2.349755 CCAAATCGTGTCCGGGGT 59.650 61.111 0.00 0.00 33.95 4.95
27 28 2.437716 CCCAAATCGTGTCCGGGG 60.438 66.667 0.00 0.00 32.88 5.73
28 29 2.437716 CCCCAAATCGTGTCCGGG 60.438 66.667 0.00 0.00 36.59 5.73
29 30 2.038269 CACCCCAAATCGTGTCCGG 61.038 63.158 0.00 0.00 33.95 5.14
30 31 2.686816 GCACCCCAAATCGTGTCCG 61.687 63.158 0.00 0.00 32.40 4.79
31 32 2.686816 CGCACCCCAAATCGTGTCC 61.687 63.158 0.00 0.00 32.40 4.02
32 33 2.686816 CCGCACCCCAAATCGTGTC 61.687 63.158 0.00 0.00 32.40 3.67
33 34 2.671619 CCGCACCCCAAATCGTGT 60.672 61.111 0.00 0.00 32.40 4.49
34 35 4.114997 GCCGCACCCCAAATCGTG 62.115 66.667 0.00 0.00 0.00 4.35
64 65 4.077184 TCCGATGGGTCGTGGTGC 62.077 66.667 0.00 0.00 46.25 5.01
65 66 2.125673 GTCCGATGGGTCGTGGTG 60.126 66.667 0.00 0.00 46.25 4.17
66 67 1.760479 TTTGTCCGATGGGTCGTGGT 61.760 55.000 0.00 0.00 46.25 4.16
67 68 1.004320 TTTGTCCGATGGGTCGTGG 60.004 57.895 0.00 0.00 46.25 4.94
68 69 1.635663 GCTTTGTCCGATGGGTCGTG 61.636 60.000 0.00 0.00 46.25 4.35
69 70 1.375523 GCTTTGTCCGATGGGTCGT 60.376 57.895 0.00 0.00 46.25 4.34
71 72 3.905249 GGCTTTGTCCGATGGGTC 58.095 61.111 0.00 0.00 33.83 4.46
98 99 2.339556 TTTCTTTGGGGCGCCGATG 61.340 57.895 22.54 15.38 0.00 3.84
99 100 2.034999 TTTCTTTGGGGCGCCGAT 59.965 55.556 22.54 0.00 0.00 4.18
100 101 2.981350 GTTTCTTTGGGGCGCCGA 60.981 61.111 22.54 11.03 0.00 5.54
101 102 2.356818 TTTGTTTCTTTGGGGCGCCG 62.357 55.000 22.54 6.07 0.00 6.46
102 103 0.179070 TTTTGTTTCTTTGGGGCGCC 60.179 50.000 21.18 21.18 0.00 6.53
103 104 1.798223 GATTTTGTTTCTTTGGGGCGC 59.202 47.619 0.00 0.00 0.00 6.53
104 105 2.412870 GGATTTTGTTTCTTTGGGGCG 58.587 47.619 0.00 0.00 0.00 6.13
105 106 2.412870 CGGATTTTGTTTCTTTGGGGC 58.587 47.619 0.00 0.00 0.00 5.80
106 107 2.870035 GCCGGATTTTGTTTCTTTGGGG 60.870 50.000 5.05 0.00 0.00 4.96
107 108 2.412870 GCCGGATTTTGTTTCTTTGGG 58.587 47.619 5.05 0.00 0.00 4.12
108 109 2.224161 TGGCCGGATTTTGTTTCTTTGG 60.224 45.455 5.05 0.00 0.00 3.28
109 110 3.104843 TGGCCGGATTTTGTTTCTTTG 57.895 42.857 5.05 0.00 0.00 2.77
110 111 3.828875 TTGGCCGGATTTTGTTTCTTT 57.171 38.095 5.05 0.00 0.00 2.52
111 112 3.306710 GGATTGGCCGGATTTTGTTTCTT 60.307 43.478 5.05 0.00 0.00 2.52
112 113 2.233676 GGATTGGCCGGATTTTGTTTCT 59.766 45.455 5.05 0.00 0.00 2.52
113 114 2.028567 TGGATTGGCCGGATTTTGTTTC 60.029 45.455 5.05 0.00 40.66 2.78
114 115 1.974236 TGGATTGGCCGGATTTTGTTT 59.026 42.857 5.05 0.00 40.66 2.83
115 116 1.550072 CTGGATTGGCCGGATTTTGTT 59.450 47.619 5.05 0.00 46.81 2.83
116 117 1.185315 CTGGATTGGCCGGATTTTGT 58.815 50.000 5.05 0.00 46.81 2.83
123 124 2.511600 GACGTCTGGATTGGCCGG 60.512 66.667 8.70 0.00 45.07 6.13
124 125 2.511600 GGACGTCTGGATTGGCCG 60.512 66.667 16.46 0.00 40.66 6.13
125 126 2.511600 CGGACGTCTGGATTGGCC 60.512 66.667 16.99 0.00 37.10 5.36
126 127 0.953960 AAACGGACGTCTGGATTGGC 60.954 55.000 27.33 1.71 0.00 4.52
127 128 0.796312 CAAACGGACGTCTGGATTGG 59.204 55.000 27.33 8.41 0.00 3.16
128 129 0.796312 CCAAACGGACGTCTGGATTG 59.204 55.000 27.33 26.60 38.45 2.67
129 130 0.321298 CCCAAACGGACGTCTGGATT 60.321 55.000 27.33 18.50 38.45 3.01
130 131 1.189524 TCCCAAACGGACGTCTGGAT 61.190 55.000 27.33 13.67 38.45 3.41
131 132 1.189524 ATCCCAAACGGACGTCTGGA 61.190 55.000 27.33 14.99 46.09 3.86
132 133 0.739813 GATCCCAAACGGACGTCTGG 60.740 60.000 27.33 19.99 46.09 3.86
133 134 1.076533 CGATCCCAAACGGACGTCTG 61.077 60.000 22.81 22.81 46.09 3.51
134 135 1.214589 CGATCCCAAACGGACGTCT 59.785 57.895 16.46 0.00 46.09 4.18
135 136 2.450345 GCGATCCCAAACGGACGTC 61.450 63.158 7.13 7.13 46.09 4.34
136 137 2.433664 GCGATCCCAAACGGACGT 60.434 61.111 0.00 0.00 46.09 4.34
137 138 3.550992 CGCGATCCCAAACGGACG 61.551 66.667 0.00 0.00 46.09 4.79
138 139 3.861263 GCGCGATCCCAAACGGAC 61.861 66.667 12.10 0.00 46.09 4.79
161 162 3.332393 TAGGAGGGAGCCCAGGTGG 62.332 68.421 8.53 0.00 38.92 4.61
162 163 2.066999 GTAGGAGGGAGCCCAGGTG 61.067 68.421 8.53 0.00 38.92 4.00
163 164 2.369001 GTAGGAGGGAGCCCAGGT 59.631 66.667 8.53 0.00 38.92 4.00
164 165 2.840102 CGTAGGAGGGAGCCCAGG 60.840 72.222 8.53 0.00 38.92 4.45
177 178 1.011463 CGACGACGATCCACCGTAG 60.011 63.158 0.00 0.00 43.49 3.51
178 179 2.463620 CCGACGACGATCCACCGTA 61.464 63.158 9.28 0.00 43.49 4.02
179 180 3.807538 CCGACGACGATCCACCGT 61.808 66.667 9.28 2.00 46.43 4.83
181 182 3.352338 AAGCCGACGACGATCCACC 62.352 63.158 9.28 0.00 42.66 4.61
182 183 2.158959 CAAGCCGACGACGATCCAC 61.159 63.158 9.28 0.00 42.66 4.02
183 184 2.180769 CAAGCCGACGACGATCCA 59.819 61.111 9.28 0.00 42.66 3.41
184 185 1.586564 CTCAAGCCGACGACGATCC 60.587 63.158 9.28 0.00 42.66 3.36
185 186 1.586564 CCTCAAGCCGACGACGATC 60.587 63.158 9.28 0.01 42.66 3.69
186 187 2.490217 CCTCAAGCCGACGACGAT 59.510 61.111 9.28 0.00 42.66 3.73
187 188 4.415332 GCCTCAAGCCGACGACGA 62.415 66.667 9.28 0.00 42.66 4.20
301 302 1.243902 TTCAATTCGTGTCCCCTTGC 58.756 50.000 0.00 0.00 0.00 4.01
355 356 3.793144 GTACAGCACAGCGGCAGC 61.793 66.667 0.00 0.00 45.58 5.25
393 399 1.229723 TTCTCCCACCTACCACCCC 60.230 63.158 0.00 0.00 0.00 4.95
394 400 1.911702 GCTTCTCCCACCTACCACCC 61.912 65.000 0.00 0.00 0.00 4.61
395 401 1.198759 TGCTTCTCCCACCTACCACC 61.199 60.000 0.00 0.00 0.00 4.61
396 402 0.250513 CTGCTTCTCCCACCTACCAC 59.749 60.000 0.00 0.00 0.00 4.16
397 403 0.909610 CCTGCTTCTCCCACCTACCA 60.910 60.000 0.00 0.00 0.00 3.25
398 404 1.908483 CCTGCTTCTCCCACCTACC 59.092 63.158 0.00 0.00 0.00 3.18
399 405 1.222113 GCCTGCTTCTCCCACCTAC 59.778 63.158 0.00 0.00 0.00 3.18
400 406 1.995626 GGCCTGCTTCTCCCACCTA 60.996 63.158 0.00 0.00 0.00 3.08
401 407 3.334054 GGCCTGCTTCTCCCACCT 61.334 66.667 0.00 0.00 0.00 4.00
402 408 4.785453 CGGCCTGCTTCTCCCACC 62.785 72.222 0.00 0.00 0.00 4.61
440 456 3.519908 GGTTAACCGTTAACGTTCACC 57.480 47.619 25.15 22.27 44.96 4.02
526 590 0.968901 AGTACATCCAACGGCCGAGA 60.969 55.000 35.90 24.79 0.00 4.04
596 693 1.448013 GGTCGCTTGTACCTCAGCC 60.448 63.158 3.84 0.00 33.97 4.85
600 697 0.172803 ACATCGGTCGCTTGTACCTC 59.827 55.000 0.00 0.00 34.66 3.85
603 700 1.553308 GGTACATCGGTCGCTTGTAC 58.447 55.000 18.85 18.85 43.08 2.90
604 701 0.457035 GGGTACATCGGTCGCTTGTA 59.543 55.000 0.00 3.23 0.00 2.41
624 723 2.423185 CACGTGATGCAATGTGGGTTAT 59.577 45.455 10.90 0.00 0.00 1.89
633 732 4.219507 TGGGTTATTTTCACGTGATGCAAT 59.780 37.500 20.80 18.64 0.00 3.56
653 754 5.308014 TCATCGGTAATTGATCAGATTGGG 58.692 41.667 11.20 0.00 0.00 4.12
662 763 4.516698 GTGCTGGAATCATCGGTAATTGAT 59.483 41.667 0.00 0.00 34.08 2.57
698 830 1.657822 GCTAGGGCACTGTAGAAAGC 58.342 55.000 0.00 0.00 38.54 3.51
735 867 3.103911 ACGCAGTTACGCTCACGC 61.104 61.111 0.00 0.00 37.78 5.34
751 883 7.280769 CGCTTGCTTTGGAGTTTAATTTAAAC 58.719 34.615 19.74 19.74 46.36 2.01
752 884 6.422400 CCGCTTGCTTTGGAGTTTAATTTAAA 59.578 34.615 0.00 0.00 0.00 1.52
753 885 5.923684 CCGCTTGCTTTGGAGTTTAATTTAA 59.076 36.000 0.00 0.00 0.00 1.52
754 886 5.010213 ACCGCTTGCTTTGGAGTTTAATTTA 59.990 36.000 0.00 0.00 0.00 1.40
755 887 4.202212 ACCGCTTGCTTTGGAGTTTAATTT 60.202 37.500 0.00 0.00 0.00 1.82
756 888 3.320826 ACCGCTTGCTTTGGAGTTTAATT 59.679 39.130 0.00 0.00 0.00 1.40
757 889 2.890945 ACCGCTTGCTTTGGAGTTTAAT 59.109 40.909 0.00 0.00 0.00 1.40
877 1025 3.966543 GAGGTGTGGGGGTGTGGG 61.967 72.222 0.00 0.00 0.00 4.61
878 1026 4.329545 CGAGGTGTGGGGGTGTGG 62.330 72.222 0.00 0.00 0.00 4.17
880 1028 3.239253 GACGAGGTGTGGGGGTGT 61.239 66.667 0.00 0.00 0.00 4.16
884 1032 2.657237 GAGTGACGAGGTGTGGGG 59.343 66.667 0.00 0.00 0.00 4.96
971 1134 2.423874 GTTTGGGGTTTTGCGGGG 59.576 61.111 0.00 0.00 0.00 5.73
980 1143 2.281772 TTTCGGGGTTCGTTTGGGGT 62.282 55.000 0.00 0.00 40.32 4.95
1022 1185 2.122189 GGATGGGGAGAGGGAGGG 60.122 72.222 0.00 0.00 0.00 4.30
1029 1192 1.669927 GGAGGAGGAGGATGGGGAGA 61.670 65.000 0.00 0.00 0.00 3.71
1030 1193 1.152139 GGAGGAGGAGGATGGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
1034 1197 2.206536 GCGAGGAGGAGGAGGATGG 61.207 68.421 0.00 0.00 0.00 3.51
1036 1199 2.200092 GGCGAGGAGGAGGAGGAT 59.800 66.667 0.00 0.00 0.00 3.24
1662 1831 2.100631 CGACGACTGGTTCCATGCC 61.101 63.158 0.00 0.00 0.00 4.40
1665 1834 1.215647 GAGCGACGACTGGTTCCAT 59.784 57.895 0.00 0.00 0.00 3.41
1998 2167 0.669625 AAACGAGAAGTACGGCCAGC 60.670 55.000 2.24 0.00 34.93 4.85
2007 2176 1.337823 ACTATGGCGCAAACGAGAAGT 60.338 47.619 10.83 0.00 43.93 3.01
2109 2278 0.252421 TGTCCATCTCCCTGCTGAGT 60.252 55.000 0.00 0.00 33.93 3.41
2131 2300 1.138859 CTCCACATAGCCAATGTCGGA 59.861 52.381 14.54 14.54 46.15 4.55
2358 2527 2.343758 GCGTCCAGCCTCTTGACA 59.656 61.111 0.00 0.00 40.81 3.58
2472 2641 1.283029 TCCTTGGCCTGGAAGAATGAG 59.717 52.381 14.32 0.00 34.07 2.90
2475 2644 0.627986 CCTCCTTGGCCTGGAAGAAT 59.372 55.000 16.74 0.00 34.07 2.40
2571 2740 7.174946 CCAAAAATCTACTCTAAGGAGCAACAA 59.825 37.037 0.00 0.00 42.98 2.83
2582 2751 5.876357 AGTGCAACCCAAAAATCTACTCTA 58.124 37.500 0.00 0.00 37.80 2.43
2593 2762 6.314896 CAGAAAATGTTTAAGTGCAACCCAAA 59.685 34.615 0.00 0.00 37.80 3.28
2604 2773 6.980397 AGTGTTCCTTGCAGAAAATGTTTAAG 59.020 34.615 0.00 0.00 0.00 1.85
2609 2778 4.646492 AGAAGTGTTCCTTGCAGAAAATGT 59.354 37.500 0.00 0.00 32.03 2.71
2610 2779 4.980434 CAGAAGTGTTCCTTGCAGAAAATG 59.020 41.667 0.00 0.00 32.03 2.32
2611 2780 4.889409 TCAGAAGTGTTCCTTGCAGAAAAT 59.111 37.500 0.00 0.00 32.03 1.82
2614 2783 3.558931 TCAGAAGTGTTCCTTGCAGAA 57.441 42.857 0.00 0.00 32.03 3.02
2615 2784 3.777106 ATCAGAAGTGTTCCTTGCAGA 57.223 42.857 0.00 0.00 32.03 4.26
2616 2785 3.611057 GCAATCAGAAGTGTTCCTTGCAG 60.611 47.826 11.39 0.00 38.69 4.41
2647 2816 4.256920 CACTAGGGTTCCAGATTCAAGTG 58.743 47.826 0.00 0.00 0.00 3.16
2659 2828 9.310449 TCTACTGATAATTATCCACTAGGGTTC 57.690 37.037 20.29 0.00 38.11 3.62
2663 2832 8.744652 CCACTCTACTGATAATTATCCACTAGG 58.255 40.741 20.29 10.55 31.71 3.02
2671 2840 6.155393 GCCTAGCCCACTCTACTGATAATTAT 59.845 42.308 0.00 0.00 0.00 1.28
2719 2888 1.452110 TTCGTTGCCATGTGAGGATG 58.548 50.000 0.00 0.00 0.00 3.51
2755 2931 0.882042 AGCAGAGTTTCACGTGGCAG 60.882 55.000 17.00 0.45 0.00 4.85
2758 2934 1.071605 GCTAGCAGAGTTTCACGTGG 58.928 55.000 17.00 0.00 0.00 4.94
2774 2950 2.167693 CCCAAGGTACACTCATTCGCTA 59.832 50.000 0.00 0.00 0.00 4.26
2840 3024 1.683385 ACTTGAGGCAGAAAAAGCACC 59.317 47.619 0.00 0.00 0.00 5.01
2856 3040 5.978919 TCTGCTTGCTTTGTTTATTGACTTG 59.021 36.000 0.00 0.00 0.00 3.16
2884 3068 1.945394 AGATTGGCGATCACTCAATGC 59.055 47.619 16.88 0.00 37.22 3.56
2917 3101 5.630121 ACTAATGTTCAATCCCACAAGACA 58.370 37.500 0.00 0.00 0.00 3.41
2958 3142 0.251742 CTGCAAGGGGTCCATTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
2973 3157 3.073678 CACATGTTACTGGCTTACTGCA 58.926 45.455 0.00 0.00 45.15 4.41
2998 3187 6.672147 ACATTGTTGTTTGATCTAGAACAGC 58.328 36.000 2.71 13.10 37.12 4.40
2999 3188 9.208022 TCTACATTGTTGTTTGATCTAGAACAG 57.792 33.333 2.71 4.70 37.12 3.16
3000 3189 9.725019 ATCTACATTGTTGTTTGATCTAGAACA 57.275 29.630 0.00 0.00 37.28 3.18
3079 3281 9.860898 ATAATTACCAATCTTTCTCTTTGTTGC 57.139 29.630 0.00 0.00 0.00 4.17
3084 3286 8.190784 CGGCAATAATTACCAATCTTTCTCTTT 58.809 33.333 0.00 0.00 0.00 2.52
3093 3295 5.767816 AAGGTCGGCAATAATTACCAATC 57.232 39.130 0.00 0.00 32.43 2.67
3124 3326 5.243730 TCACATGTTCTTCCAATTTCCCTTC 59.756 40.000 0.00 0.00 0.00 3.46
3273 3871 3.615224 TTTCTACTCCCGCCGTAAATT 57.385 42.857 0.00 0.00 0.00 1.82
3274 3872 3.832615 ATTTCTACTCCCGCCGTAAAT 57.167 42.857 0.00 0.00 0.00 1.40
3275 3873 3.055963 TCAATTTCTACTCCCGCCGTAAA 60.056 43.478 0.00 0.00 0.00 2.01
3277 3875 2.101783 TCAATTTCTACTCCCGCCGTA 58.898 47.619 0.00 0.00 0.00 4.02
3279 3877 2.240493 ATCAATTTCTACTCCCGCCG 57.760 50.000 0.00 0.00 0.00 6.46
3280 3878 3.945285 TCAAATCAATTTCTACTCCCGCC 59.055 43.478 0.00 0.00 0.00 6.13
3281 3879 4.496507 GCTCAAATCAATTTCTACTCCCGC 60.497 45.833 0.00 0.00 0.00 6.13
3282 3880 4.035675 GGCTCAAATCAATTTCTACTCCCG 59.964 45.833 0.00 0.00 0.00 5.14
3284 3882 6.765915 AAGGCTCAAATCAATTTCTACTCC 57.234 37.500 0.00 0.00 0.00 3.85
3285 3883 7.820648 TGAAAGGCTCAAATCAATTTCTACTC 58.179 34.615 0.00 0.00 0.00 2.59
3299 4072 2.555325 CACTGCATTCTGAAAGGCTCAA 59.445 45.455 15.40 0.00 42.54 3.02
3343 4116 7.383572 GCACATACAATTGAACATAACCAACAA 59.616 33.333 13.59 0.00 0.00 2.83
3358 4131 7.786030 AGTACAGATAGACAGCACATACAATT 58.214 34.615 0.00 0.00 0.00 2.32
3360 4133 6.183360 GGAGTACAGATAGACAGCACATACAA 60.183 42.308 0.00 0.00 0.00 2.41
3404 4182 7.545362 AAGCTCTGTATAACATGCTTACAAG 57.455 36.000 14.51 1.61 42.00 3.16
3413 4195 6.476378 ACTTGTGGAAAGCTCTGTATAACAT 58.524 36.000 0.00 0.00 0.00 2.71
3455 4237 5.895636 TGAATGTACAAAGGCTATGTTGG 57.104 39.130 0.00 0.00 32.27 3.77
3469 4251 9.929180 TGCTATTAGAGTATCCAATGAATGTAC 57.071 33.333 0.00 0.00 33.66 2.90
3479 4261 7.527796 AGGTTCTAGTGCTATTAGAGTATCCA 58.472 38.462 0.00 0.00 33.66 3.41
3540 4322 2.119801 ACCTGCAATCGATTTGAGCT 57.880 45.000 8.21 0.00 37.53 4.09
3541 4323 2.162208 TGAACCTGCAATCGATTTGAGC 59.838 45.455 8.21 9.90 37.53 4.26
3550 4332 2.352960 GGACGATCTTGAACCTGCAATC 59.647 50.000 0.00 0.00 0.00 2.67
3637 4419 2.487086 CCGGGATGCCTGATGAATGTAA 60.487 50.000 0.28 0.00 29.82 2.41
3655 4437 0.958091 TGTTTCCATGAACAAGCCGG 59.042 50.000 0.00 0.00 36.64 6.13
3691 4473 5.529060 AGCTTCAAAGTCTGAACCAAGTAAG 59.471 40.000 0.00 0.00 39.20 2.34
3692 4474 5.437060 AGCTTCAAAGTCTGAACCAAGTAA 58.563 37.500 0.00 0.00 39.20 2.24
3694 4476 3.891049 AGCTTCAAAGTCTGAACCAAGT 58.109 40.909 0.00 0.00 39.20 3.16
3712 4494 1.598130 GTTGTCGGTGAGGCAAGCT 60.598 57.895 0.00 0.00 46.23 3.74
3772 4554 2.125147 GGTGCTCTGTATGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
3775 4557 2.113860 TTTCTGGTGCTCTGTATGCC 57.886 50.000 0.00 0.00 0.00 4.40
3826 4608 2.094417 GCCAAAAGCATAGACGTCTGAC 59.906 50.000 28.12 16.14 42.97 3.51
3844 4626 1.680522 GCTCGAGGAGAAGGATGCCA 61.681 60.000 15.58 0.00 0.00 4.92
3859 4641 4.441695 TTGCCGCTGAGGAGCTCG 62.442 66.667 7.83 0.00 43.77 5.03
3886 4668 0.674581 CTGCCAGAACCGAATGCTCA 60.675 55.000 0.00 0.00 0.00 4.26
3892 4674 1.896660 GGTTGCTGCCAGAACCGAA 60.897 57.895 0.00 0.00 32.66 4.30
3898 4680 0.322816 GGAGATTGGTTGCTGCCAGA 60.323 55.000 0.00 0.00 40.01 3.86
4080 4862 1.021390 GCCGTCCTCATTGTCACCAG 61.021 60.000 0.00 0.00 0.00 4.00
4084 4866 0.179111 GATCGCCGTCCTCATTGTCA 60.179 55.000 0.00 0.00 0.00 3.58
4100 4882 5.472137 AGGAGTCGCTAGTAAGATCAAGATC 59.528 44.000 1.81 1.81 38.09 2.75
4101 4883 5.381757 AGGAGTCGCTAGTAAGATCAAGAT 58.618 41.667 0.00 0.00 0.00 2.40
4102 4884 4.783055 AGGAGTCGCTAGTAAGATCAAGA 58.217 43.478 0.00 0.00 0.00 3.02
4103 4885 5.992829 TCTAGGAGTCGCTAGTAAGATCAAG 59.007 44.000 12.59 0.00 0.00 3.02
4104 4886 5.759273 GTCTAGGAGTCGCTAGTAAGATCAA 59.241 44.000 12.59 0.00 0.00 2.57
4105 4887 5.299148 GTCTAGGAGTCGCTAGTAAGATCA 58.701 45.833 12.59 0.00 0.00 2.92
4132 4914 5.723672 TCATCCATAGGACGAATAGGAAC 57.276 43.478 0.00 0.00 32.98 3.62
4176 4959 4.598022 TGTTCACTTGGGATAATGCATCA 58.402 39.130 0.00 0.00 35.11 3.07
4196 4979 5.163794 GCAAACTGCATATAACTACGGTTGT 60.164 40.000 0.00 0.00 44.26 3.32
4222 5005 2.037901 TCCATCAGCTCTTCTAGGCAG 58.962 52.381 0.00 0.00 0.00 4.85
4232 5015 2.237392 ACTAACACCCTTCCATCAGCTC 59.763 50.000 0.00 0.00 0.00 4.09
4237 5020 2.039879 ACACCACTAACACCCTTCCATC 59.960 50.000 0.00 0.00 0.00 3.51
4259 5042 1.287739 TGACCCCAAATCCATTCTCCC 59.712 52.381 0.00 0.00 0.00 4.30
4343 5128 1.281419 CATACACCAGGGGTACACCA 58.719 55.000 18.57 0.00 42.91 4.17
4344 5129 0.544697 CCATACACCAGGGGTACACC 59.455 60.000 5.83 5.83 32.11 4.16
4345 5130 1.575419 TCCATACACCAGGGGTACAC 58.425 55.000 2.71 0.00 32.11 2.90
4346 5131 2.123589 CATCCATACACCAGGGGTACA 58.876 52.381 2.71 0.00 32.11 2.90
4347 5132 2.124411 ACATCCATACACCAGGGGTAC 58.876 52.381 2.71 0.00 32.11 3.34
4348 5133 2.507886 CAACATCCATACACCAGGGGTA 59.492 50.000 3.27 3.27 32.11 3.69
4349 5134 1.284785 CAACATCCATACACCAGGGGT 59.715 52.381 0.00 0.00 35.62 4.95
4350 5135 1.284785 ACAACATCCATACACCAGGGG 59.715 52.381 0.00 0.00 0.00 4.79
4351 5136 2.368439 CACAACATCCATACACCAGGG 58.632 52.381 0.00 0.00 0.00 4.45
4352 5137 2.290896 ACCACAACATCCATACACCAGG 60.291 50.000 0.00 0.00 0.00 4.45
4353 5138 2.749076 CACCACAACATCCATACACCAG 59.251 50.000 0.00 0.00 0.00 4.00
4466 5251 4.813161 CCACATAGTAGAAGATTGGTGCTG 59.187 45.833 0.00 0.00 0.00 4.41
4746 6282 2.423446 GGCCTATCTCCGCCACTG 59.577 66.667 0.00 0.00 45.01 3.66
4750 6286 3.631046 CTGGGGCCTATCTCCGCC 61.631 72.222 0.84 0.00 44.92 6.13
4751 6287 3.631046 CCTGGGGCCTATCTCCGC 61.631 72.222 0.84 0.00 37.10 5.54
4752 6288 3.631046 GCCTGGGGCCTATCTCCG 61.631 72.222 0.84 0.00 44.06 4.63
4783 6319 4.101448 ACATCTCACGCCCCAGGC 62.101 66.667 0.00 0.00 46.75 4.85
4784 6320 2.124983 CACATCTCACGCCCCAGG 60.125 66.667 0.00 0.00 0.00 4.45
4785 6321 2.124983 CCACATCTCACGCCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
4786 6322 4.408821 GCCACATCTCACGCCCCA 62.409 66.667 0.00 0.00 0.00 4.96
4787 6323 4.408821 TGCCACATCTCACGCCCC 62.409 66.667 0.00 0.00 0.00 5.80
4788 6324 2.238847 TAGTGCCACATCTCACGCCC 62.239 60.000 0.00 0.00 38.19 6.13
4789 6325 1.084370 GTAGTGCCACATCTCACGCC 61.084 60.000 0.00 0.00 38.19 5.68
4791 6327 1.067565 ACAGTAGTGCCACATCTCACG 60.068 52.381 0.00 0.00 38.19 4.35
4793 6329 2.749280 CACAGTAGTGCCACATCTCA 57.251 50.000 0.00 0.00 39.21 3.27
4804 6340 7.281324 TGCTACAACATACAAAAACACAGTAGT 59.719 33.333 0.00 0.00 0.00 2.73
4805 6341 7.586300 GTGCTACAACATACAAAAACACAGTAG 59.414 37.037 0.00 0.00 0.00 2.57
4806 6342 7.281324 AGTGCTACAACATACAAAAACACAGTA 59.719 33.333 0.00 0.00 0.00 2.74
4809 6345 6.443934 AGTGCTACAACATACAAAAACACA 57.556 33.333 0.00 0.00 0.00 3.72
4810 6346 7.586300 CAGTAGTGCTACAACATACAAAAACAC 59.414 37.037 11.39 0.00 38.48 3.32
4811 6347 7.281324 ACAGTAGTGCTACAACATACAAAAACA 59.719 33.333 11.39 0.00 38.48 2.83
4814 6350 6.203915 CCACAGTAGTGCTACAACATACAAAA 59.796 38.462 11.39 0.00 44.53 2.44
4815 6351 5.699001 CCACAGTAGTGCTACAACATACAAA 59.301 40.000 11.39 0.00 44.53 2.83
4816 6352 5.234752 CCACAGTAGTGCTACAACATACAA 58.765 41.667 11.39 0.00 44.53 2.41
4817 6353 4.816392 CCACAGTAGTGCTACAACATACA 58.184 43.478 11.39 0.00 44.53 2.29
4818 6354 3.617263 GCCACAGTAGTGCTACAACATAC 59.383 47.826 11.39 0.00 44.53 2.39
4819 6355 3.259625 TGCCACAGTAGTGCTACAACATA 59.740 43.478 11.39 0.00 44.53 2.29
4820 6356 2.038426 TGCCACAGTAGTGCTACAACAT 59.962 45.455 11.39 0.00 44.53 2.71
4821 6357 1.414550 TGCCACAGTAGTGCTACAACA 59.585 47.619 11.39 0.53 44.53 3.33
4822 6358 1.798813 GTGCCACAGTAGTGCTACAAC 59.201 52.381 11.39 0.00 44.53 3.32
4823 6359 1.691976 AGTGCCACAGTAGTGCTACAA 59.308 47.619 11.39 0.00 44.53 2.41
4824 6360 1.000843 CAGTGCCACAGTAGTGCTACA 59.999 52.381 11.39 0.00 44.53 2.74
4825 6361 1.714794 CAGTGCCACAGTAGTGCTAC 58.285 55.000 0.00 1.33 44.53 3.58
4828 6364 3.257933 GCAGTGCCACAGTAGTGC 58.742 61.111 2.85 0.00 45.84 4.40
4844 6380 4.101448 ACATCTCACGCCCCAGGC 62.101 66.667 0.00 0.00 46.75 4.85
4845 6381 2.124983 CACATCTCACGCCCCAGG 60.125 66.667 0.00 0.00 0.00 4.45
4846 6382 0.606401 AAACACATCTCACGCCCCAG 60.606 55.000 0.00 0.00 0.00 4.45
4847 6383 0.605319 GAAACACATCTCACGCCCCA 60.605 55.000 0.00 0.00 0.00 4.96
4848 6384 1.305930 GGAAACACATCTCACGCCCC 61.306 60.000 0.00 0.00 0.00 5.80
4849 6385 0.321653 AGGAAACACATCTCACGCCC 60.322 55.000 0.00 0.00 0.00 6.13
4850 6386 0.798776 CAGGAAACACATCTCACGCC 59.201 55.000 0.00 0.00 0.00 5.68
4851 6387 0.798776 CCAGGAAACACATCTCACGC 59.201 55.000 0.00 0.00 0.00 5.34
4852 6388 1.442769 CCCAGGAAACACATCTCACG 58.557 55.000 0.00 0.00 0.00 4.35
4853 6389 1.826385 CCCCAGGAAACACATCTCAC 58.174 55.000 0.00 0.00 0.00 3.51
4854 6390 0.038166 GCCCCAGGAAACACATCTCA 59.962 55.000 0.00 0.00 0.00 3.27
4855 6391 1.026718 CGCCCCAGGAAACACATCTC 61.027 60.000 0.00 0.00 0.00 2.75
4856 6392 1.002134 CGCCCCAGGAAACACATCT 60.002 57.895 0.00 0.00 0.00 2.90
4857 6393 1.303317 ACGCCCCAGGAAACACATC 60.303 57.895 0.00 0.00 0.00 3.06
4858 6394 1.603455 CACGCCCCAGGAAACACAT 60.603 57.895 0.00 0.00 0.00 3.21
4859 6395 2.203280 CACGCCCCAGGAAACACA 60.203 61.111 0.00 0.00 0.00 3.72
4860 6396 1.966451 CTCACGCCCCAGGAAACAC 60.966 63.158 0.00 0.00 0.00 3.32
4861 6397 2.429930 CTCACGCCCCAGGAAACA 59.570 61.111 0.00 0.00 0.00 2.83
4862 6398 2.359975 CCTCACGCCCCAGGAAAC 60.360 66.667 0.00 0.00 30.32 2.78
4863 6399 4.344865 GCCTCACGCCCCAGGAAA 62.345 66.667 0.00 0.00 30.32 3.13
4874 6410 0.304705 CACACTGTTTCACGCCTCAC 59.695 55.000 0.00 0.00 0.00 3.51
4875 6411 1.436195 GCACACTGTTTCACGCCTCA 61.436 55.000 0.00 0.00 0.00 3.86
4876 6412 1.160329 AGCACACTGTTTCACGCCTC 61.160 55.000 0.00 0.00 0.00 4.70
4877 6413 0.105964 TAGCACACTGTTTCACGCCT 59.894 50.000 0.00 0.00 0.00 5.52
4878 6414 0.941542 TTAGCACACTGTTTCACGCC 59.058 50.000 0.00 0.00 0.00 5.68
4879 6415 1.069906 CCTTAGCACACTGTTTCACGC 60.070 52.381 0.00 0.00 0.00 5.34
4880 6416 2.032894 CACCTTAGCACACTGTTTCACG 60.033 50.000 0.00 0.00 0.00 4.35
4881 6417 2.290641 CCACCTTAGCACACTGTTTCAC 59.709 50.000 0.00 0.00 0.00 3.18
4882 6418 2.171659 TCCACCTTAGCACACTGTTTCA 59.828 45.455 0.00 0.00 0.00 2.69
4883 6419 2.846193 TCCACCTTAGCACACTGTTTC 58.154 47.619 0.00 0.00 0.00 2.78
4884 6420 3.073062 AGATCCACCTTAGCACACTGTTT 59.927 43.478 0.00 0.00 0.00 2.83
4885 6421 2.639839 AGATCCACCTTAGCACACTGTT 59.360 45.455 0.00 0.00 0.00 3.16
4886 6422 2.027745 CAGATCCACCTTAGCACACTGT 60.028 50.000 0.00 0.00 0.00 3.55
4889 6425 2.014068 GCCAGATCCACCTTAGCACAC 61.014 57.143 0.00 0.00 0.00 3.82
4893 6429 1.915228 TGGCCAGATCCACCTTAGC 59.085 57.895 0.00 0.00 0.00 3.09
4979 6517 2.184448 CAGTTCTTTGCCACAAACACG 58.816 47.619 0.00 0.00 0.00 4.49
4980 6518 3.230743 ACAGTTCTTTGCCACAAACAC 57.769 42.857 0.00 0.00 0.00 3.32
5051 6589 7.497595 TCCAGTTGAATGTATGTATAGTGGTC 58.502 38.462 0.00 0.00 0.00 4.02
5052 6590 7.432148 TCCAGTTGAATGTATGTATAGTGGT 57.568 36.000 0.00 0.00 0.00 4.16
5053 6591 8.908786 ATTCCAGTTGAATGTATGTATAGTGG 57.091 34.615 0.00 0.00 42.18 4.00
5055 6593 9.905713 ACAATTCCAGTTGAATGTATGTATAGT 57.094 29.630 0.00 0.00 42.97 2.12
5060 6598 9.023962 ACAATACAATTCCAGTTGAATGTATGT 57.976 29.630 10.20 5.82 42.97 2.29
5061 6599 9.292846 CACAATACAATTCCAGTTGAATGTATG 57.707 33.333 10.20 1.49 42.97 2.39
5062 6600 9.023962 ACACAATACAATTCCAGTTGAATGTAT 57.976 29.630 0.00 0.00 42.97 2.29
5063 6601 8.402798 ACACAATACAATTCCAGTTGAATGTA 57.597 30.769 0.00 0.00 42.97 2.29
5064 6602 7.288810 ACACAATACAATTCCAGTTGAATGT 57.711 32.000 0.00 0.00 42.97 2.71
5065 6603 9.345517 CTAACACAATACAATTCCAGTTGAATG 57.654 33.333 0.00 0.00 42.97 2.67
5066 6604 9.295825 TCTAACACAATACAATTCCAGTTGAAT 57.704 29.630 0.00 0.00 45.75 2.57
5067 6605 8.684386 TCTAACACAATACAATTCCAGTTGAA 57.316 30.769 0.00 0.00 37.38 2.69
5068 6606 8.684386 TTCTAACACAATACAATTCCAGTTGA 57.316 30.769 0.00 0.00 33.37 3.18
5069 6607 9.398170 CTTTCTAACACAATACAATTCCAGTTG 57.602 33.333 0.00 0.00 35.25 3.16
5070 6608 9.349713 TCTTTCTAACACAATACAATTCCAGTT 57.650 29.630 0.00 0.00 0.00 3.16
5071 6609 8.918202 TCTTTCTAACACAATACAATTCCAGT 57.082 30.769 0.00 0.00 0.00 4.00
5072 6610 9.612620 GTTCTTTCTAACACAATACAATTCCAG 57.387 33.333 0.00 0.00 0.00 3.86
5073 6611 9.126151 TGTTCTTTCTAACACAATACAATTCCA 57.874 29.630 0.00 0.00 34.50 3.53
5086 6624 7.445121 AGATGTGATCAGTGTTCTTTCTAACA 58.555 34.615 0.00 0.00 37.03 2.41
5087 6625 7.064016 GGAGATGTGATCAGTGTTCTTTCTAAC 59.936 40.741 0.00 0.00 0.00 2.34
5088 6626 7.038729 AGGAGATGTGATCAGTGTTCTTTCTAA 60.039 37.037 0.00 0.00 0.00 2.10
5089 6627 6.438741 AGGAGATGTGATCAGTGTTCTTTCTA 59.561 38.462 0.00 0.00 0.00 2.10
5090 6628 5.248020 AGGAGATGTGATCAGTGTTCTTTCT 59.752 40.000 0.00 2.81 0.00 2.52
5091 6629 5.486526 AGGAGATGTGATCAGTGTTCTTTC 58.513 41.667 0.00 0.00 0.00 2.62
5092 6630 5.495926 AGGAGATGTGATCAGTGTTCTTT 57.504 39.130 0.00 0.00 0.00 2.52
5093 6631 6.611613 TTAGGAGATGTGATCAGTGTTCTT 57.388 37.500 0.00 0.00 0.00 2.52
5094 6632 6.382282 TCATTAGGAGATGTGATCAGTGTTCT 59.618 38.462 0.00 0.00 0.00 3.01
5095 6633 6.478344 GTCATTAGGAGATGTGATCAGTGTTC 59.522 42.308 0.00 0.00 0.00 3.18
5096 6634 6.155910 AGTCATTAGGAGATGTGATCAGTGTT 59.844 38.462 0.00 0.00 0.00 3.32
5097 6635 5.660417 AGTCATTAGGAGATGTGATCAGTGT 59.340 40.000 0.00 0.00 0.00 3.55
5098 6636 6.159299 AGTCATTAGGAGATGTGATCAGTG 57.841 41.667 0.00 0.00 0.00 3.66
5099 6637 5.304101 GGAGTCATTAGGAGATGTGATCAGT 59.696 44.000 0.00 0.00 0.00 3.41
5100 6638 5.303845 TGGAGTCATTAGGAGATGTGATCAG 59.696 44.000 0.00 0.00 0.00 2.90
5101 6639 5.211201 TGGAGTCATTAGGAGATGTGATCA 58.789 41.667 0.00 0.00 0.00 2.92
5102 6640 5.798125 TGGAGTCATTAGGAGATGTGATC 57.202 43.478 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.