Multiple sequence alignment - TraesCS2A01G510300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G510300 chr2A 100.000 4140 0 0 1 4140 735567638 735563499 0.000000e+00 7646.0
1 TraesCS2A01G510300 chr2A 92.157 2601 197 6 920 3516 735402736 735400139 0.000000e+00 3666.0
2 TraesCS2A01G510300 chr2A 91.045 1206 106 2 910 2114 735446698 735445494 0.000000e+00 1628.0
3 TraesCS2A01G510300 chr2A 82.564 1732 264 28 1536 3251 735406818 735405109 0.000000e+00 1491.0
4 TraesCS2A01G510300 chr2A 81.200 1250 216 16 2017 3255 735445468 735444227 0.000000e+00 989.0
5 TraesCS2A01G510300 chr2A 80.843 1044 177 15 2153 3181 735583759 735582724 0.000000e+00 798.0
6 TraesCS2A01G510300 chr2A 78.965 599 74 27 3518 4091 735582540 735581969 1.090000e-95 361.0
7 TraesCS2A01G510300 chr2D 91.637 1710 136 5 2153 3858 602782162 602780456 0.000000e+00 2359.0
8 TraesCS2A01G510300 chr2D 92.851 1133 79 2 906 2037 603129507 603128376 0.000000e+00 1642.0
9 TraesCS2A01G510300 chr2D 92.883 1110 79 0 907 2016 602783310 602782201 0.000000e+00 1613.0
10 TraesCS2A01G510300 chr2D 82.275 1055 166 15 2153 3205 603128386 603127351 0.000000e+00 893.0
11 TraesCS2A01G510300 chr2D 92.870 547 34 3 1 542 249984476 249985022 0.000000e+00 789.0
12 TraesCS2A01G510300 chr2D 92.857 546 34 3 1 542 602659044 602658500 0.000000e+00 787.0
13 TraesCS2A01G510300 chr2D 92.491 546 37 2 1 542 82111949 82111404 0.000000e+00 778.0
14 TraesCS2A01G510300 chr2D 87.204 211 11 5 3943 4140 602780404 602780197 4.160000e-55 226.0
15 TraesCS2A01G510300 chr2B 84.859 2338 324 22 910 3243 733715709 733713398 0.000000e+00 2329.0
16 TraesCS2A01G510300 chr2B 85.159 2237 310 16 907 3131 733746704 733744478 0.000000e+00 2272.0
17 TraesCS2A01G510300 chr2B 90.590 1339 100 14 2063 3390 733643530 733642207 0.000000e+00 1751.0
18 TraesCS2A01G510300 chr2B 90.826 1199 97 6 908 2105 733645875 733644689 0.000000e+00 1592.0
19 TraesCS2A01G510300 chr2B 90.331 1210 112 4 907 2114 733733027 733731821 0.000000e+00 1581.0
20 TraesCS2A01G510300 chr2B 88.915 1254 123 11 907 2150 733472852 733471605 0.000000e+00 1531.0
21 TraesCS2A01G510300 chr2B 81.782 1268 206 18 1991 3243 733744462 733743205 0.000000e+00 1038.0
22 TraesCS2A01G510300 chr2B 80.861 1254 213 19 2017 3251 733731794 733730549 0.000000e+00 961.0
23 TraesCS2A01G510300 chr2B 83.640 978 148 8 2159 3131 733644665 733643695 0.000000e+00 909.0
24 TraesCS2A01G510300 chr2B 80.511 1057 178 17 2197 3239 733843577 733842535 0.000000e+00 785.0
25 TraesCS2A01G510300 chr2B 90.566 371 26 5 3397 3760 733642241 733641873 2.240000e-132 483.0
26 TraesCS2A01G510300 chr2B 79.877 651 74 32 3518 4139 733730423 733729801 1.380000e-114 424.0
27 TraesCS2A01G510300 chr2B 80.597 536 50 20 3578 4091 733841870 733841367 8.460000e-97 364.0
28 TraesCS2A01G510300 chr2B 78.854 506 70 22 3578 4063 733748960 733748472 1.450000e-79 307.0
29 TraesCS2A01G510300 chr2B 80.479 292 40 11 2924 3205 733456595 733456311 1.510000e-49 207.0
30 TraesCS2A01G510300 chr2B 82.684 231 14 10 3861 4091 733470105 733469901 9.140000e-42 182.0
31 TraesCS2A01G510300 chr2B 91.549 71 6 0 3943 4013 733641745 733641675 9.470000e-17 99.0
32 TraesCS2A01G510300 chr2B 92.593 54 4 0 3186 3239 733281605 733281552 1.230000e-10 78.7
33 TraesCS2A01G510300 chr5D 92.857 546 35 2 1 542 497931210 497930665 0.000000e+00 789.0
34 TraesCS2A01G510300 chr5D 93.767 369 21 1 542 908 434346733 434347101 1.680000e-153 553.0
35 TraesCS2A01G510300 chr5D 93.280 372 20 3 540 906 520917856 520917485 1.010000e-150 544.0
36 TraesCS2A01G510300 chr3D 93.015 544 33 4 1 540 317196722 317196180 0.000000e+00 789.0
37 TraesCS2A01G510300 chr3D 92.857 546 34 3 1 542 561765264 561765808 0.000000e+00 787.0
38 TraesCS2A01G510300 chr3D 92.505 547 36 3 1 542 397797833 397797287 0.000000e+00 778.0
39 TraesCS2A01G510300 chr3D 95.393 369 15 1 540 906 561766569 561766937 1.660000e-163 586.0
40 TraesCS2A01G510300 chr3D 93.067 375 21 3 540 909 612807793 612808167 1.010000e-150 544.0
41 TraesCS2A01G510300 chr3D 92.781 374 22 3 540 908 496065639 496066012 1.690000e-148 536.0
42 TraesCS2A01G510300 chr7D 92.505 547 36 3 1 542 136690964 136691510 0.000000e+00 778.0
43 TraesCS2A01G510300 chr7D 93.029 373 20 3 540 906 250317664 250318036 1.310000e-149 540.0
44 TraesCS2A01G510300 chr1A 92.491 546 37 2 1 542 561609804 561609259 0.000000e+00 778.0
45 TraesCS2A01G510300 chr1A 94.038 369 20 1 540 908 561607166 561606800 3.610000e-155 558.0
46 TraesCS2A01G510300 chr4D 94.609 371 16 2 540 908 37497135 37496767 4.640000e-159 571.0
47 TraesCS2A01G510300 chr1D 92.992 371 24 1 540 910 316300439 316300071 1.310000e-149 540.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G510300 chr2A 735563499 735567638 4139 True 7646.000000 7646 100.000000 1 4140 1 chr2A.!!$R1 4139
1 TraesCS2A01G510300 chr2A 735400139 735406818 6679 True 2578.500000 3666 87.360500 920 3516 2 chr2A.!!$R2 2596
2 TraesCS2A01G510300 chr2A 735444227 735446698 2471 True 1308.500000 1628 86.122500 910 3255 2 chr2A.!!$R3 2345
3 TraesCS2A01G510300 chr2A 735581969 735583759 1790 True 579.500000 798 79.904000 2153 4091 2 chr2A.!!$R4 1938
4 TraesCS2A01G510300 chr2D 602780197 602783310 3113 True 1399.333333 2359 90.574667 907 4140 3 chr2D.!!$R3 3233
5 TraesCS2A01G510300 chr2D 603127351 603129507 2156 True 1267.500000 1642 87.563000 906 3205 2 chr2D.!!$R4 2299
6 TraesCS2A01G510300 chr2D 249984476 249985022 546 False 789.000000 789 92.870000 1 542 1 chr2D.!!$F1 541
7 TraesCS2A01G510300 chr2D 602658500 602659044 544 True 787.000000 787 92.857000 1 542 1 chr2D.!!$R2 541
8 TraesCS2A01G510300 chr2D 82111404 82111949 545 True 778.000000 778 92.491000 1 542 1 chr2D.!!$R1 541
9 TraesCS2A01G510300 chr2B 733713398 733715709 2311 True 2329.000000 2329 84.859000 910 3243 1 chr2B.!!$R3 2333
10 TraesCS2A01G510300 chr2B 733743205 733748960 5755 True 1205.666667 2272 81.931667 907 4063 3 chr2B.!!$R7 3156
11 TraesCS2A01G510300 chr2B 733729801 733733027 3226 True 988.666667 1581 83.689667 907 4139 3 chr2B.!!$R6 3232
12 TraesCS2A01G510300 chr2B 733641675 733645875 4200 True 966.800000 1751 89.434200 908 4013 5 chr2B.!!$R5 3105
13 TraesCS2A01G510300 chr2B 733469901 733472852 2951 True 856.500000 1531 85.799500 907 4091 2 chr2B.!!$R4 3184
14 TraesCS2A01G510300 chr2B 733841367 733843577 2210 True 574.500000 785 80.554000 2197 4091 2 chr2B.!!$R8 1894
15 TraesCS2A01G510300 chr5D 497930665 497931210 545 True 789.000000 789 92.857000 1 542 1 chr5D.!!$R1 541
16 TraesCS2A01G510300 chr3D 317196180 317196722 542 True 789.000000 789 93.015000 1 540 1 chr3D.!!$R1 539
17 TraesCS2A01G510300 chr3D 397797287 397797833 546 True 778.000000 778 92.505000 1 542 1 chr3D.!!$R2 541
18 TraesCS2A01G510300 chr3D 561765264 561766937 1673 False 686.500000 787 94.125000 1 906 2 chr3D.!!$F3 905
19 TraesCS2A01G510300 chr7D 136690964 136691510 546 False 778.000000 778 92.505000 1 542 1 chr7D.!!$F1 541
20 TraesCS2A01G510300 chr1A 561606800 561609804 3004 True 668.000000 778 93.264500 1 908 2 chr1A.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 765 0.250124 TAATATTGGGCGGCCAGTCG 60.250 55.0 29.42 0.00 0.00 4.18 F
789 796 0.742990 ACATATGGGTCGGCGTGTTG 60.743 55.0 6.85 0.00 0.00 3.33 F
857 864 0.747852 GCCGACCCAAAAGGACAAAA 59.252 50.0 0.00 0.00 39.89 2.44 F
2361 9957 0.872388 CGGTCTTTAAGCGGCTTGTT 59.128 50.0 24.75 1.25 44.98 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2573 10184 0.541863 CCAGAACCTTGGTCGCCTAT 59.458 55.000 0.00 0.00 33.38 2.57 R
2601 10215 2.753029 GCTGCTCCCAGTCCAGTT 59.247 61.111 0.00 0.00 41.26 3.16 R
2674 10288 2.812499 CCATGGCAGCTTGATGGC 59.188 61.111 0.00 5.48 45.50 4.40 R
4096 12263 0.322648 TCTGTCGTCTAGGTCGTCCA 59.677 55.000 0.51 5.98 35.89 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 140 6.059484 ACGAGTTCTTCCACAATTTCCTTTA 58.941 36.000 0.00 0.00 0.00 1.85
145 150 4.630069 CACAATTTCCTTTACGACTCCGAT 59.370 41.667 0.00 0.00 39.50 4.18
157 162 1.331138 GACTCCGATGATTCGTCGTCT 59.669 52.381 22.85 8.05 43.97 4.18
211 217 2.039879 GGTCCATCACCACCTAAACAGT 59.960 50.000 0.00 0.00 45.98 3.55
337 343 4.367450 CAAACCCGTTGTTCAAACATCAT 58.633 39.130 0.00 0.00 38.95 2.45
500 507 1.286501 GTCCGAATGCTTGCATACGA 58.713 50.000 8.61 2.38 0.00 3.43
556 563 1.071542 TGAGCGTGATTGGGAAACTCA 59.928 47.619 0.00 0.00 0.00 3.41
557 564 2.290260 TGAGCGTGATTGGGAAACTCAT 60.290 45.455 0.00 0.00 0.00 2.90
560 567 2.414559 GCGTGATTGGGAAACTCATGTG 60.415 50.000 0.00 0.00 0.00 3.21
564 571 0.961019 TTGGGAAACTCATGTGCAGC 59.039 50.000 0.00 0.00 0.00 5.25
580 587 2.419667 GCAGCTGCAAAATGATTTGGT 58.580 42.857 33.36 0.00 44.93 3.67
581 588 2.809696 GCAGCTGCAAAATGATTTGGTT 59.190 40.909 33.36 0.00 44.93 3.67
582 589 3.364565 GCAGCTGCAAAATGATTTGGTTG 60.365 43.478 33.36 0.00 44.93 3.77
584 591 4.151689 CAGCTGCAAAATGATTTGGTTGAG 59.848 41.667 0.00 0.00 44.93 3.02
588 595 7.035004 GCTGCAAAATGATTTGGTTGAGTATA 58.965 34.615 0.00 0.00 44.93 1.47
589 596 7.707893 GCTGCAAAATGATTTGGTTGAGTATAT 59.292 33.333 0.00 0.00 44.93 0.86
590 597 8.929827 TGCAAAATGATTTGGTTGAGTATATG 57.070 30.769 0.00 0.00 44.93 1.78
593 600 9.304731 CAAAATGATTTGGTTGAGTATATGTGG 57.695 33.333 0.00 0.00 41.81 4.17
597 604 3.838244 TGGTTGAGTATATGTGGGCTC 57.162 47.619 0.00 0.00 0.00 4.70
598 605 3.111484 TGGTTGAGTATATGTGGGCTCA 58.889 45.455 0.00 0.00 36.35 4.26
599 606 3.716353 TGGTTGAGTATATGTGGGCTCAT 59.284 43.478 0.00 0.00 37.74 2.90
602 609 5.126067 GTTGAGTATATGTGGGCTCATGTT 58.874 41.667 0.00 0.00 37.74 2.71
605 612 1.696063 ATATGTGGGCTCATGTTGGC 58.304 50.000 0.00 0.00 0.00 4.52
606 613 0.330941 TATGTGGGCTCATGTTGGCA 59.669 50.000 14.32 0.00 0.00 4.92
607 614 0.542467 ATGTGGGCTCATGTTGGCAA 60.542 50.000 14.32 0.00 0.00 4.52
608 615 1.290009 GTGGGCTCATGTTGGCAAC 59.710 57.895 23.12 23.12 0.00 4.17
610 617 1.907807 GGGCTCATGTTGGCAACCA 60.908 57.895 26.31 15.17 0.00 3.67
611 618 1.470996 GGGCTCATGTTGGCAACCAA 61.471 55.000 26.31 10.36 41.69 3.67
612 619 0.609662 GGCTCATGTTGGCAACCAAT 59.390 50.000 26.31 12.28 45.80 3.16
617 624 4.735578 GCTCATGTTGGCAACCAATAGATG 60.736 45.833 26.31 20.43 45.80 2.90
618 625 3.130869 TCATGTTGGCAACCAATAGATGC 59.869 43.478 26.31 0.00 45.80 3.91
619 626 2.523245 TGTTGGCAACCAATAGATGCA 58.477 42.857 26.31 1.81 45.80 3.96
620 627 3.098377 TGTTGGCAACCAATAGATGCAT 58.902 40.909 26.31 0.00 45.80 3.96
621 628 3.130869 TGTTGGCAACCAATAGATGCATC 59.869 43.478 26.31 19.37 45.80 3.91
622 629 3.301794 TGGCAACCAATAGATGCATCT 57.698 42.857 30.85 30.85 41.80 2.90
624 631 3.633525 TGGCAACCAATAGATGCATCTTC 59.366 43.478 32.94 6.05 41.80 2.87
625 632 3.887716 GGCAACCAATAGATGCATCTTCT 59.112 43.478 32.94 18.49 41.80 2.85
626 633 4.340381 GGCAACCAATAGATGCATCTTCTT 59.660 41.667 32.94 22.73 41.80 2.52
630 637 8.139989 GCAACCAATAGATGCATCTTCTTTTAT 58.860 33.333 32.94 17.00 39.81 1.40
633 640 8.562892 ACCAATAGATGCATCTTCTTTTATTCG 58.437 33.333 32.94 19.28 38.32 3.34
634 641 8.562892 CCAATAGATGCATCTTCTTTTATTCGT 58.437 33.333 32.94 7.94 38.32 3.85
635 642 9.941664 CAATAGATGCATCTTCTTTTATTCGTT 57.058 29.630 32.94 7.50 38.32 3.85
637 644 9.941664 ATAGATGCATCTTCTTTTATTCGTTTG 57.058 29.630 32.94 0.00 38.32 2.93
640 647 6.212235 TGCATCTTCTTTTATTCGTTTGCAA 58.788 32.000 0.00 0.00 33.85 4.08
642 649 7.223582 TGCATCTTCTTTTATTCGTTTGCAAAA 59.776 29.630 14.67 0.00 33.85 2.44
643 650 7.527183 GCATCTTCTTTTATTCGTTTGCAAAAC 59.473 33.333 14.67 7.51 0.00 2.43
644 651 8.755018 CATCTTCTTTTATTCGTTTGCAAAACT 58.245 29.630 14.67 1.52 0.00 2.66
646 653 9.959749 TCTTCTTTTATTCGTTTGCAAAACTAT 57.040 25.926 14.67 9.56 0.00 2.12
651 658 8.858003 TTTATTCGTTTGCAAAACTATGTGAA 57.142 26.923 14.67 9.56 0.00 3.18
672 679 5.927115 TGAAACATTTTTATTTGTACCCGGC 59.073 36.000 0.00 0.00 0.00 6.13
673 680 5.731957 AACATTTTTATTTGTACCCGGCT 57.268 34.783 0.00 0.00 0.00 5.52
674 681 5.731957 ACATTTTTATTTGTACCCGGCTT 57.268 34.783 0.00 0.00 0.00 4.35
676 683 7.412853 ACATTTTTATTTGTACCCGGCTTAT 57.587 32.000 0.00 0.00 0.00 1.73
677 684 8.522542 ACATTTTTATTTGTACCCGGCTTATA 57.477 30.769 0.00 0.00 0.00 0.98
678 685 8.968969 ACATTTTTATTTGTACCCGGCTTATAA 58.031 29.630 0.00 0.00 0.00 0.98
686 693 8.661352 TTTGTACCCGGCTTATAAAACTATAC 57.339 34.615 0.00 0.00 0.00 1.47
687 694 7.601705 TGTACCCGGCTTATAAAACTATACT 57.398 36.000 0.00 0.00 0.00 2.12
730 737 9.702494 TGTTATTTGACAATATGTTTGAATGCA 57.298 25.926 0.00 0.00 0.00 3.96
736 743 8.828688 TGACAATATGTTTGAATGCAAATCAA 57.171 26.923 12.72 12.72 45.01 2.57
737 744 9.438228 TGACAATATGTTTGAATGCAAATCAAT 57.562 25.926 16.26 7.11 45.01 2.57
739 746 9.221933 ACAATATGTTTGAATGCAAATCAATGT 57.778 25.926 16.26 13.59 45.01 2.71
748 755 8.890124 TGAATGCAAATCAATGTAATATTGGG 57.110 30.769 3.28 0.00 0.00 4.12
749 756 7.441760 TGAATGCAAATCAATGTAATATTGGGC 59.558 33.333 3.28 0.00 0.00 5.36
752 759 4.519540 AATCAATGTAATATTGGGCGGC 57.480 40.909 0.00 0.00 0.00 6.53
753 760 2.235016 TCAATGTAATATTGGGCGGCC 58.765 47.619 23.42 23.42 0.00 6.13
754 761 1.959985 CAATGTAATATTGGGCGGCCA 59.040 47.619 29.27 29.27 0.00 5.36
756 763 0.548989 TGTAATATTGGGCGGCCAGT 59.451 50.000 30.86 29.67 0.00 4.00
757 764 1.235724 GTAATATTGGGCGGCCAGTC 58.764 55.000 29.42 11.64 0.00 3.51
758 765 0.250124 TAATATTGGGCGGCCAGTCG 60.250 55.000 29.42 0.00 0.00 4.18
775 782 2.203015 GGCCACGCCGACACATAT 60.203 61.111 0.00 0.00 39.62 1.78
779 786 1.153449 CACGCCGACACATATGGGT 60.153 57.895 11.27 11.27 0.00 4.51
785 792 1.143183 GACACATATGGGTCGGCGT 59.857 57.895 21.83 0.00 38.85 5.68
786 793 1.151777 GACACATATGGGTCGGCGTG 61.152 60.000 21.83 3.37 38.85 5.34
787 794 1.153449 CACATATGGGTCGGCGTGT 60.153 57.895 6.85 0.00 0.00 4.49
789 796 0.742990 ACATATGGGTCGGCGTGTTG 60.743 55.000 6.85 0.00 0.00 3.33
791 798 2.602746 ATATGGGTCGGCGTGTTGGG 62.603 60.000 6.85 0.00 0.00 4.12
813 820 1.588674 CGCTGCCGACCCAAATATAA 58.411 50.000 0.00 0.00 36.29 0.98
814 821 1.944024 CGCTGCCGACCCAAATATAAA 59.056 47.619 0.00 0.00 36.29 1.40
815 822 2.356382 CGCTGCCGACCCAAATATAAAA 59.644 45.455 0.00 0.00 36.29 1.52
817 824 3.630312 GCTGCCGACCCAAATATAAAAGA 59.370 43.478 0.00 0.00 0.00 2.52
819 826 4.204012 TGCCGACCCAAATATAAAAGAGG 58.796 43.478 0.00 0.00 0.00 3.69
822 829 3.250040 CGACCCAAATATAAAAGAGGGCG 59.750 47.826 0.00 0.00 39.97 6.13
825 832 3.568430 CCCAAATATAAAAGAGGGCGGAC 59.432 47.826 0.00 0.00 0.00 4.79
826 833 3.250040 CCAAATATAAAAGAGGGCGGACG 59.750 47.826 0.00 0.00 0.00 4.79
827 834 2.165319 ATATAAAAGAGGGCGGACGC 57.835 50.000 8.39 8.39 41.06 5.19
853 860 3.053896 CGGCCGACCCAAAAGGAC 61.054 66.667 24.07 0.00 39.89 3.85
854 861 2.114411 GGCCGACCCAAAAGGACA 59.886 61.111 0.00 0.00 39.89 4.02
855 862 1.529713 GGCCGACCCAAAAGGACAA 60.530 57.895 0.00 0.00 39.89 3.18
857 864 0.747852 GCCGACCCAAAAGGACAAAA 59.252 50.000 0.00 0.00 39.89 2.44
858 865 1.137282 GCCGACCCAAAAGGACAAAAA 59.863 47.619 0.00 0.00 39.89 1.94
863 870 1.410882 CCCAAAAGGACAAAAAGCGGA 59.589 47.619 0.00 0.00 38.24 5.54
864 871 2.469826 CCAAAAGGACAAAAAGCGGAC 58.530 47.619 0.00 0.00 0.00 4.79
866 873 1.670791 AAAGGACAAAAAGCGGACGA 58.329 45.000 0.00 0.00 0.00 4.20
868 875 1.670791 AGGACAAAAAGCGGACGAAA 58.329 45.000 0.00 0.00 0.00 3.46
870 877 2.225727 AGGACAAAAAGCGGACGAAATC 59.774 45.455 0.00 0.00 0.00 2.17
871 878 2.230864 GACAAAAAGCGGACGAAATCG 58.769 47.619 0.48 0.48 46.33 3.34
880 887 2.048877 ACGAAATCGCCGTCCGTT 60.049 55.556 2.15 0.00 44.43 4.44
883 890 1.133869 GAAATCGCCGTCCGTTTGG 59.866 57.895 0.00 0.00 38.35 3.28
886 893 3.945304 ATCGCCGTCCGTTTGGGTC 62.945 63.158 0.00 0.00 38.35 4.46
901 908 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
902 909 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
903 910 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
1291 4455 8.085909 TCAATCACAAGAACGTAGTCAGATTAA 58.914 33.333 0.00 0.00 45.00 1.40
1299 4463 7.727181 AGAACGTAGTCAGATTAATTGGCTAT 58.273 34.615 12.15 1.84 45.00 2.97
1416 4580 3.202906 GGATACACGGCTAAGAATTGCA 58.797 45.455 0.00 0.00 0.00 4.08
1468 4632 9.783081 ATATGCATTCACAAATGTATACTCAGA 57.217 29.630 3.54 0.00 46.45 3.27
1890 6676 2.804527 GGAACTTACCAAACGTCCTCAC 59.195 50.000 0.00 0.00 0.00 3.51
1937 6723 2.721090 GCAAACTTAAGAAAGCTGCACG 59.279 45.455 10.09 0.00 41.34 5.34
1975 6761 6.784031 AGACCAACTCTGTTTTCTTGGATAT 58.216 36.000 2.32 0.00 37.25 1.63
2039 6919 1.442688 GCAGCAGTAGCCAAAACGC 60.443 57.895 0.00 0.00 43.56 4.84
2119 7122 1.805428 AACGGGAATTGTGGCTGCAC 61.805 55.000 0.50 0.00 0.00 4.57
2120 7123 1.973281 CGGGAATTGTGGCTGCACT 60.973 57.895 0.50 0.00 0.00 4.40
2191 7410 4.819105 ACTTCTATCATTGGGTCGACAA 57.181 40.909 18.91 4.20 34.41 3.18
2260 8699 1.145571 AGTTCTGGGCAAGGGTACAA 58.854 50.000 0.00 0.00 0.00 2.41
2286 8725 4.562757 GGGACAACATACAGAGCAACACTA 60.563 45.833 0.00 0.00 0.00 2.74
2336 9932 2.553028 GGCTGAAAGATGTGGACTTGGA 60.553 50.000 0.00 0.00 34.07 3.53
2350 9946 0.902531 CTTGGAGGAGGCGGTCTTTA 59.097 55.000 0.00 0.00 0.00 1.85
2361 9957 0.872388 CGGTCTTTAAGCGGCTTGTT 59.128 50.000 24.75 1.25 44.98 2.83
2403 9999 4.036734 CAGAACAAACACATAGTGCCACTT 59.963 41.667 1.02 0.00 36.98 3.16
2443 10039 3.258971 AGGATGAGAAGTTGCTAGTGC 57.741 47.619 0.00 0.00 40.20 4.40
2496 10092 7.254218 GCAAAAGTACTCCACGGTAATGTATAC 60.254 40.741 0.00 0.00 0.00 1.47
2517 10127 7.912056 ATACACTGTACAATGATCATATGCC 57.088 36.000 11.94 5.26 0.00 4.40
2528 10138 4.989277 TGATCATATGCCTGCCTTTACAT 58.011 39.130 0.00 0.00 0.00 2.29
2531 10141 5.772825 TCATATGCCTGCCTTTACATTTC 57.227 39.130 0.00 0.00 0.00 2.17
2534 10144 2.170166 TGCCTGCCTTTACATTTCCTG 58.830 47.619 0.00 0.00 0.00 3.86
2556 10166 6.127814 CCTGAAGTGTTTGATGCATCACTAAT 60.128 38.462 28.72 14.01 39.72 1.73
2601 10215 2.156098 AAGGTTCTGGCCCAGCTCA 61.156 57.895 5.66 0.00 0.00 4.26
2674 10288 1.071385 CAGGCTATCCACTTAGCTGGG 59.929 57.143 0.00 0.00 43.37 4.45
2728 10342 1.194781 ACATCCTGCTCACCGGAACT 61.195 55.000 9.46 0.00 32.12 3.01
2778 10395 8.275758 TGGCCTGATAACACTTGGTATTTATTA 58.724 33.333 3.32 0.00 0.00 0.98
2803 10420 3.665675 CTCCGGCTACTGTGCACCC 62.666 68.421 15.69 6.70 34.04 4.61
3183 10816 4.697352 ACATCATAGTGAGTGAAAGTTGCC 59.303 41.667 0.00 0.00 0.00 4.52
3451 11142 5.818136 AACATTGGGTTCATGATTCTACG 57.182 39.130 0.00 0.00 33.35 3.51
3713 11824 5.939883 CAGATTAGGGATGAACAGAACACAA 59.060 40.000 0.00 0.00 0.00 3.33
3800 11921 3.767230 CGAAGTCCACGCACGCTG 61.767 66.667 0.00 0.00 0.00 5.18
3883 12017 4.074526 TGCCGAGCTGGAGCAGAC 62.075 66.667 7.59 0.00 45.16 3.51
3925 12059 1.392534 GGGAGGGAGTCAGGGAGAA 59.607 63.158 0.00 0.00 0.00 2.87
3926 12060 0.030603 GGGAGGGAGTCAGGGAGAAT 60.031 60.000 0.00 0.00 0.00 2.40
3927 12061 1.127343 GGAGGGAGTCAGGGAGAATG 58.873 60.000 0.00 0.00 0.00 2.67
3928 12062 1.127343 GAGGGAGTCAGGGAGAATGG 58.873 60.000 0.00 0.00 0.00 3.16
3930 12064 0.326618 GGGAGTCAGGGAGAATGGGA 60.327 60.000 0.00 0.00 0.00 4.37
3932 12066 1.343478 GGAGTCAGGGAGAATGGGAGA 60.343 57.143 0.00 0.00 0.00 3.71
3933 12067 2.688477 GAGTCAGGGAGAATGGGAGAT 58.312 52.381 0.00 0.00 0.00 2.75
3934 12068 2.368221 GAGTCAGGGAGAATGGGAGATG 59.632 54.545 0.00 0.00 0.00 2.90
3935 12069 2.022625 AGTCAGGGAGAATGGGAGATGA 60.023 50.000 0.00 0.00 0.00 2.92
3936 12070 2.103941 GTCAGGGAGAATGGGAGATGAC 59.896 54.545 0.00 0.00 0.00 3.06
3937 12071 1.069823 CAGGGAGAATGGGAGATGACG 59.930 57.143 0.00 0.00 0.00 4.35
3938 12072 0.250081 GGGAGAATGGGAGATGACGC 60.250 60.000 0.00 0.00 0.00 5.19
3939 12073 0.465705 GGAGAATGGGAGATGACGCA 59.534 55.000 0.00 0.00 37.16 5.24
3940 12074 1.071385 GGAGAATGGGAGATGACGCAT 59.929 52.381 0.00 0.00 43.40 4.73
3941 12075 2.411904 GAGAATGGGAGATGACGCATC 58.588 52.381 10.63 10.63 41.34 3.91
4106 12285 1.681327 GAGTGGCCTGGACGACCTA 60.681 63.158 3.32 0.00 37.04 3.08
4130 12310 2.118513 AGAGAGGCAGACGTGGGT 59.881 61.111 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 162 3.829026 CCAATATCTCCTCCTCATCGTCA 59.171 47.826 0.00 0.00 0.00 4.35
211 217 0.813610 CACAGAACAACGGGCACTGA 60.814 55.000 0.00 0.00 38.67 3.41
500 507 0.620556 AATGAGATCACCGGGCACTT 59.379 50.000 6.32 0.00 0.00 3.16
534 541 2.086869 AGTTTCCCAATCACGCTCATG 58.913 47.619 0.00 0.00 0.00 3.07
542 549 2.821378 CTGCACATGAGTTTCCCAATCA 59.179 45.455 0.00 0.00 0.00 2.57
544 551 1.547372 GCTGCACATGAGTTTCCCAAT 59.453 47.619 0.00 0.00 0.00 3.16
545 552 0.961019 GCTGCACATGAGTTTCCCAA 59.039 50.000 0.00 0.00 0.00 4.12
547 554 0.524862 CAGCTGCACATGAGTTTCCC 59.475 55.000 0.00 0.00 0.00 3.97
548 555 0.109412 GCAGCTGCACATGAGTTTCC 60.109 55.000 33.36 0.00 41.59 3.13
549 556 3.396491 GCAGCTGCACATGAGTTTC 57.604 52.632 33.36 0.00 41.59 2.78
560 567 2.419667 ACCAAATCATTTTGCAGCTGC 58.580 42.857 31.89 31.89 40.77 5.25
564 571 9.027129 CATATACTCAACCAAATCATTTTGCAG 57.973 33.333 0.00 0.00 40.77 4.41
571 578 5.536161 GCCCACATATACTCAACCAAATCAT 59.464 40.000 0.00 0.00 0.00 2.45
573 580 5.133221 AGCCCACATATACTCAACCAAATC 58.867 41.667 0.00 0.00 0.00 2.17
574 581 5.129368 AGCCCACATATACTCAACCAAAT 57.871 39.130 0.00 0.00 0.00 2.32
575 582 4.018870 TGAGCCCACATATACTCAACCAAA 60.019 41.667 0.00 0.00 36.27 3.28
576 583 3.521531 TGAGCCCACATATACTCAACCAA 59.478 43.478 0.00 0.00 36.27 3.67
577 584 3.111484 TGAGCCCACATATACTCAACCA 58.889 45.455 0.00 0.00 36.27 3.67
580 587 5.125356 CAACATGAGCCCACATATACTCAA 58.875 41.667 0.00 0.00 42.08 3.02
581 588 4.444733 CCAACATGAGCCCACATATACTCA 60.445 45.833 0.00 0.00 42.89 3.41
582 589 4.067896 CCAACATGAGCCCACATATACTC 58.932 47.826 0.00 0.00 0.00 2.59
584 591 2.554032 GCCAACATGAGCCCACATATAC 59.446 50.000 0.00 0.00 0.00 1.47
588 595 0.542467 TTGCCAACATGAGCCCACAT 60.542 50.000 0.00 0.00 0.00 3.21
589 596 1.152589 TTGCCAACATGAGCCCACA 60.153 52.632 0.00 0.00 0.00 4.17
590 597 1.290009 GTTGCCAACATGAGCCCAC 59.710 57.895 1.91 0.00 0.00 4.61
593 600 0.609662 ATTGGTTGCCAACATGAGCC 59.390 50.000 10.18 0.00 46.95 4.70
597 604 3.119065 TGCATCTATTGGTTGCCAACATG 60.119 43.478 10.18 4.59 46.95 3.21
598 605 3.098377 TGCATCTATTGGTTGCCAACAT 58.902 40.909 10.18 0.00 46.95 2.71
599 606 2.523245 TGCATCTATTGGTTGCCAACA 58.477 42.857 10.18 0.00 46.95 3.33
602 609 3.301794 AGATGCATCTATTGGTTGCCA 57.698 42.857 27.73 0.00 39.24 4.92
607 614 8.562892 CGAATAAAAGAAGATGCATCTATTGGT 58.437 33.333 28.92 13.58 35.76 3.67
608 615 8.562892 ACGAATAAAAGAAGATGCATCTATTGG 58.437 33.333 28.92 23.24 35.76 3.16
611 618 9.941664 CAAACGAATAAAAGAAGATGCATCTAT 57.058 29.630 28.92 17.87 35.76 1.98
612 619 7.910162 GCAAACGAATAAAAGAAGATGCATCTA 59.090 33.333 28.92 13.15 35.76 1.98
617 624 6.689178 TTGCAAACGAATAAAAGAAGATGC 57.311 33.333 0.00 0.00 0.00 3.91
618 625 8.755018 AGTTTTGCAAACGAATAAAAGAAGATG 58.245 29.630 12.39 0.00 0.00 2.90
619 626 8.871686 AGTTTTGCAAACGAATAAAAGAAGAT 57.128 26.923 12.39 0.00 0.00 2.40
620 627 9.959749 ATAGTTTTGCAAACGAATAAAAGAAGA 57.040 25.926 12.39 0.00 0.00 2.87
621 628 9.993881 CATAGTTTTGCAAACGAATAAAAGAAG 57.006 29.630 12.39 0.00 0.00 2.85
622 629 9.522804 ACATAGTTTTGCAAACGAATAAAAGAA 57.477 25.926 12.39 0.00 0.00 2.52
624 631 8.963130 TCACATAGTTTTGCAAACGAATAAAAG 58.037 29.630 12.39 0.31 0.00 2.27
625 632 8.858003 TCACATAGTTTTGCAAACGAATAAAA 57.142 26.923 12.39 0.00 0.00 1.52
626 633 8.858003 TTCACATAGTTTTGCAAACGAATAAA 57.142 26.923 12.39 0.00 0.00 1.40
630 637 6.093404 TGTTTCACATAGTTTTGCAAACGAA 58.907 32.000 12.39 0.00 0.00 3.85
632 639 5.940603 TGTTTCACATAGTTTTGCAAACG 57.059 34.783 12.39 0.96 0.00 3.60
633 640 9.553418 AAAAATGTTTCACATAGTTTTGCAAAC 57.447 25.926 12.39 7.48 37.97 2.93
644 651 9.627395 CGGGTACAAATAAAAATGTTTCACATA 57.373 29.630 0.00 0.00 37.97 2.29
646 653 6.924060 CCGGGTACAAATAAAAATGTTTCACA 59.076 34.615 0.00 0.00 0.00 3.58
651 658 5.731957 AGCCGGGTACAAATAAAAATGTT 57.268 34.783 3.10 0.00 0.00 2.71
655 662 9.636879 GTTTTATAAGCCGGGTACAAATAAAAA 57.363 29.630 23.32 14.77 32.32 1.94
656 663 9.022884 AGTTTTATAAGCCGGGTACAAATAAAA 57.977 29.630 20.56 20.56 0.00 1.52
660 667 9.276590 GTATAGTTTTATAAGCCGGGTACAAAT 57.723 33.333 6.57 1.01 0.00 2.32
704 711 9.702494 TGCATTCAAACATATTGTCAAATAACA 57.298 25.926 0.00 0.00 32.06 2.41
710 717 8.828688 TGATTTGCATTCAAACATATTGTCAA 57.171 26.923 0.00 0.00 44.11 3.18
711 718 8.828688 TTGATTTGCATTCAAACATATTGTCA 57.171 26.923 9.47 0.00 44.11 3.58
712 719 9.697250 CATTGATTTGCATTCAAACATATTGTC 57.303 29.630 14.40 0.00 44.11 3.18
722 729 9.327628 CCCAATATTACATTGATTTGCATTCAA 57.672 29.630 13.19 13.19 37.49 2.69
724 731 7.359431 CGCCCAATATTACATTGATTTGCATTC 60.359 37.037 0.00 0.00 0.00 2.67
728 735 4.685628 CCGCCCAATATTACATTGATTTGC 59.314 41.667 0.00 0.00 0.00 3.68
729 736 4.685628 GCCGCCCAATATTACATTGATTTG 59.314 41.667 0.00 0.00 0.00 2.32
730 737 4.262420 GGCCGCCCAATATTACATTGATTT 60.262 41.667 0.00 0.00 0.00 2.17
733 740 2.235016 GGCCGCCCAATATTACATTGA 58.765 47.619 0.00 0.00 0.00 2.57
734 741 1.959985 TGGCCGCCCAATATTACATTG 59.040 47.619 7.03 0.00 38.46 2.82
736 743 1.144913 ACTGGCCGCCCAATATTACAT 59.855 47.619 7.03 0.00 41.58 2.29
737 744 0.548989 ACTGGCCGCCCAATATTACA 59.451 50.000 7.03 0.00 41.58 2.41
739 746 0.250124 CGACTGGCCGCCCAATATTA 60.250 55.000 7.03 0.00 41.58 0.98
740 747 1.525995 CGACTGGCCGCCCAATATT 60.526 57.895 7.03 0.00 41.58 1.28
741 748 2.111043 CGACTGGCCGCCCAATAT 59.889 61.111 7.03 0.00 41.58 1.28
758 765 2.203015 ATATGTGTCGGCGTGGCC 60.203 61.111 6.85 0.00 46.75 5.36
760 767 1.887242 CCCATATGTGTCGGCGTGG 60.887 63.158 6.85 4.99 0.00 4.94
761 768 1.151777 GACCCATATGTGTCGGCGTG 61.152 60.000 6.85 0.00 0.00 5.34
762 769 1.143183 GACCCATATGTGTCGGCGT 59.857 57.895 6.85 0.00 0.00 5.68
763 770 4.027755 GACCCATATGTGTCGGCG 57.972 61.111 0.00 0.00 0.00 6.46
769 776 0.742990 AACACGCCGACCCATATGTG 60.743 55.000 1.24 0.00 0.00 3.21
770 777 0.742990 CAACACGCCGACCCATATGT 60.743 55.000 1.24 0.00 0.00 2.29
771 778 1.436195 CCAACACGCCGACCCATATG 61.436 60.000 0.00 0.00 0.00 1.78
772 779 1.153249 CCAACACGCCGACCCATAT 60.153 57.895 0.00 0.00 0.00 1.78
773 780 2.266372 CCAACACGCCGACCCATA 59.734 61.111 0.00 0.00 0.00 2.74
774 781 4.715523 CCCAACACGCCGACCCAT 62.716 66.667 0.00 0.00 0.00 4.00
793 800 0.882927 TATATTTGGGTCGGCAGCGC 60.883 55.000 0.00 0.00 0.00 5.92
794 801 1.588674 TTATATTTGGGTCGGCAGCG 58.411 50.000 0.00 0.00 0.00 5.18
795 802 3.630312 TCTTTTATATTTGGGTCGGCAGC 59.370 43.478 0.00 0.00 0.00 5.25
796 803 4.275936 CCTCTTTTATATTTGGGTCGGCAG 59.724 45.833 0.00 0.00 0.00 4.85
797 804 4.204012 CCTCTTTTATATTTGGGTCGGCA 58.796 43.478 0.00 0.00 0.00 5.69
798 805 3.568430 CCCTCTTTTATATTTGGGTCGGC 59.432 47.826 0.00 0.00 0.00 5.54
800 807 3.250040 CGCCCTCTTTTATATTTGGGTCG 59.750 47.826 0.00 0.00 37.09 4.79
801 808 3.568430 CCGCCCTCTTTTATATTTGGGTC 59.432 47.826 0.00 0.00 37.09 4.46
802 809 3.203487 TCCGCCCTCTTTTATATTTGGGT 59.797 43.478 0.00 0.00 37.09 4.51
803 810 3.568430 GTCCGCCCTCTTTTATATTTGGG 59.432 47.826 0.00 0.00 37.76 4.12
804 811 3.250040 CGTCCGCCCTCTTTTATATTTGG 59.750 47.826 0.00 0.00 0.00 3.28
805 812 3.303791 GCGTCCGCCCTCTTTTATATTTG 60.304 47.826 0.00 0.00 34.56 2.32
806 813 2.876550 GCGTCCGCCCTCTTTTATATTT 59.123 45.455 0.00 0.00 34.56 1.40
809 816 3.673173 GCGTCCGCCCTCTTTTATA 57.327 52.632 0.00 0.00 34.56 0.98
837 844 1.110518 TTTGTCCTTTTGGGTCGGCC 61.111 55.000 0.00 0.00 40.87 6.13
839 846 2.801699 GCTTTTTGTCCTTTTGGGTCGG 60.802 50.000 0.00 0.00 40.87 4.79
840 847 2.469826 GCTTTTTGTCCTTTTGGGTCG 58.530 47.619 0.00 0.00 40.87 4.79
841 848 2.469826 CGCTTTTTGTCCTTTTGGGTC 58.530 47.619 0.00 0.00 40.87 4.46
843 850 1.410882 TCCGCTTTTTGTCCTTTTGGG 59.589 47.619 0.00 0.00 40.87 4.12
844 851 2.469826 GTCCGCTTTTTGTCCTTTTGG 58.530 47.619 0.00 0.00 42.21 3.28
849 856 1.670791 TTTCGTCCGCTTTTTGTCCT 58.329 45.000 0.00 0.00 0.00 3.85
850 857 2.581637 GATTTCGTCCGCTTTTTGTCC 58.418 47.619 0.00 0.00 0.00 4.02
852 859 1.662026 GCGATTTCGTCCGCTTTTTGT 60.662 47.619 0.00 0.00 46.96 2.83
853 860 0.974836 GCGATTTCGTCCGCTTTTTG 59.025 50.000 0.00 0.00 46.96 2.44
854 861 3.378013 GCGATTTCGTCCGCTTTTT 57.622 47.368 0.00 0.00 46.96 1.94
863 870 1.665599 AAACGGACGGCGATTTCGT 60.666 52.632 16.62 14.37 44.03 3.85
864 871 1.225637 CAAACGGACGGCGATTTCG 60.226 57.895 16.62 13.70 43.27 3.46
866 873 2.329614 CCCAAACGGACGGCGATTT 61.330 57.895 16.62 5.62 0.00 2.17
868 875 3.945304 GACCCAAACGGACGGCGAT 62.945 63.158 16.62 0.00 34.64 4.58
886 893 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
888 895 2.806945 TAAGAGCAACTCCAATGGGG 57.193 50.000 0.00 0.00 38.37 4.96
890 897 4.142315 CCAACATAAGAGCAACTCCAATGG 60.142 45.833 0.00 0.00 31.53 3.16
891 898 4.701651 TCCAACATAAGAGCAACTCCAATG 59.298 41.667 5.63 5.63 32.71 2.82
892 899 4.922206 TCCAACATAAGAGCAACTCCAAT 58.078 39.130 0.00 0.00 0.00 3.16
895 902 7.391148 TTTAATCCAACATAAGAGCAACTCC 57.609 36.000 0.00 0.00 0.00 3.85
897 904 9.643693 CAAATTTAATCCAACATAAGAGCAACT 57.356 29.630 0.00 0.00 0.00 3.16
901 908 9.860898 AAGTCAAATTTAATCCAACATAAGAGC 57.139 29.630 0.00 0.00 0.00 4.09
1291 4455 6.183360 GCACTTTCATCTACACAATAGCCAAT 60.183 38.462 0.00 0.00 0.00 3.16
1299 4463 3.788227 AGGGCACTTTCATCTACACAA 57.212 42.857 0.00 0.00 0.00 3.33
1429 4593 6.321945 TGTGAATGCATATAGTCCAATGCTTT 59.678 34.615 0.00 8.16 46.87 3.51
1468 4632 5.710567 CAGGCTTGATATCACCATGAATGAT 59.289 40.000 4.48 14.52 40.02 2.45
1890 6676 4.449068 AGACGTTCTGCAACTTCTAACATG 59.551 41.667 0.00 0.00 38.90 3.21
1937 6723 4.704965 AGTTGGTCTTTCTTGTACCTGAC 58.295 43.478 0.00 0.00 34.23 3.51
1975 6761 4.262420 GGCTGGAGCTTGTTTATTTTTCCA 60.262 41.667 0.00 0.00 41.70 3.53
2039 6919 3.337398 GCTGGAGCTACAGTTCTCG 57.663 57.895 26.79 1.66 40.59 4.04
2066 7069 1.610038 CACTGCTTTCTTGTGATGGCA 59.390 47.619 0.00 0.00 33.95 4.92
2119 7122 1.662629 CTGTGATAGTGCCGCTTTGAG 59.337 52.381 0.00 0.00 0.00 3.02
2120 7123 1.675714 CCTGTGATAGTGCCGCTTTGA 60.676 52.381 0.00 0.00 0.00 2.69
2191 7410 1.812571 GTCGAACAATTGGCCTGTCAT 59.187 47.619 10.83 0.00 0.00 3.06
2260 8699 1.831106 TGCTCTGTATGTTGTCCCGAT 59.169 47.619 0.00 0.00 0.00 4.18
2286 8725 3.837146 CCACCAGCTCATATCCACTATCT 59.163 47.826 0.00 0.00 0.00 1.98
2336 9932 1.218316 CGCTTAAAGACCGCCTCCT 59.782 57.895 0.00 0.00 0.00 3.69
2350 9946 1.164041 AACAGCGTAACAAGCCGCTT 61.164 50.000 0.00 0.00 35.36 4.68
2361 9957 0.958382 GGATGGCACCAAACAGCGTA 60.958 55.000 0.00 0.00 0.00 4.42
2403 9999 4.653801 TCCTTGCTGCAGTAATACCATAGA 59.346 41.667 17.94 4.14 0.00 1.98
2496 10092 5.334646 GCAGGCATATGATCATTGTACAGTG 60.335 44.000 14.65 11.91 0.00 3.66
2517 10127 4.520492 ACACTTCAGGAAATGTAAAGGCAG 59.480 41.667 0.00 0.00 0.00 4.85
2528 10138 4.583907 TGATGCATCAAACACTTCAGGAAA 59.416 37.500 26.87 0.00 33.08 3.13
2531 10141 3.504906 AGTGATGCATCAAACACTTCAGG 59.495 43.478 30.24 0.00 40.03 3.86
2534 10144 7.809331 TGAAATTAGTGATGCATCAAACACTTC 59.191 33.333 30.24 25.51 42.39 3.01
2556 10166 7.549134 GGTCGCCTATATTCACATATCATGAAA 59.451 37.037 0.00 0.00 39.43 2.69
2573 10184 0.541863 CCAGAACCTTGGTCGCCTAT 59.458 55.000 0.00 0.00 33.38 2.57
2601 10215 2.753029 GCTGCTCCCAGTCCAGTT 59.247 61.111 0.00 0.00 41.26 3.16
2674 10288 2.812499 CCATGGCAGCTTGATGGC 59.188 61.111 0.00 5.48 45.50 4.40
3183 10816 0.950836 TTGAATGCAACTGTGACCCG 59.049 50.000 0.00 0.00 0.00 5.28
3271 10915 9.569122 AGGATAGTAGTTCTCTGAGATAACTTC 57.431 37.037 16.77 12.44 32.61 3.01
3408 11058 5.752955 TGTTTAATTTGGAAAAGTGCAGAGC 59.247 36.000 0.00 0.00 0.00 4.09
3417 11067 8.844244 CATGAACCCAATGTTTAATTTGGAAAA 58.156 29.630 11.83 0.00 44.23 2.29
3551 11495 7.667043 ACGAGTCTAAAAGCAAACATGATTA 57.333 32.000 0.00 0.00 0.00 1.75
3696 11807 3.550842 GCTTGTTGTGTTCTGTTCATCCC 60.551 47.826 0.00 0.00 0.00 3.85
3713 11824 4.887071 TGAACACTGTAATTCTTGGCTTGT 59.113 37.500 5.79 0.00 0.00 3.16
3800 11921 1.063764 CGTAAGCGAGAGTACTGGGAC 59.936 57.143 0.00 0.00 41.33 4.46
3925 12059 1.368950 CCGATGCGTCATCTCCCAT 59.631 57.895 6.75 0.00 38.59 4.00
3926 12060 2.796193 CCCGATGCGTCATCTCCCA 61.796 63.158 6.75 0.00 38.59 4.37
3927 12061 2.029666 CCCGATGCGTCATCTCCC 59.970 66.667 6.75 0.00 38.59 4.30
3928 12062 2.663188 GCCCGATGCGTCATCTCC 60.663 66.667 6.75 3.35 38.59 3.71
3954 12121 1.298014 CAAGCTCCTCCACCTCCAC 59.702 63.158 0.00 0.00 0.00 4.02
3999 12166 1.000771 ACTGCTCTCGGCTCCAGTA 60.001 57.895 0.00 0.00 42.39 2.74
4001 12168 2.493973 GACTGCTCTCGGCTCCAG 59.506 66.667 0.00 0.00 42.39 3.86
4094 12261 0.675837 TGTCGTCTAGGTCGTCCAGG 60.676 60.000 0.51 0.00 35.89 4.45
4096 12263 0.322648 TCTGTCGTCTAGGTCGTCCA 59.677 55.000 0.51 5.98 35.89 4.02
4106 12285 1.302383 CGTCTGCCTCTCTGTCGTCT 61.302 60.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.