Multiple sequence alignment - TraesCS2A01G508700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G508700 chr2A 100.000 3552 0 0 1 3552 734989798 734986247 0.000000e+00 6560.0
1 TraesCS2A01G508700 chr2A 88.055 1666 108 36 997 2638 735244328 735245926 0.000000e+00 1890.0
2 TraesCS2A01G508700 chr2A 83.472 962 104 22 1631 2558 735238934 735239874 0.000000e+00 845.0
3 TraesCS2A01G508700 chr2A 81.016 1043 140 26 1563 2572 735261903 735262920 0.000000e+00 776.0
4 TraesCS2A01G508700 chr2A 85.845 438 42 8 967 1398 735238349 735238772 6.990000e-122 448.0
5 TraesCS2A01G508700 chr2A 77.083 240 49 5 1085 1318 735261439 735261678 2.220000e-27 134.0
6 TraesCS2A01G508700 chr2A 92.982 57 1 3 382 438 196519576 196519523 2.940000e-11 80.5
7 TraesCS2A01G508700 chr2A 95.833 48 2 0 391 438 338522266 338522313 1.060000e-10 78.7
8 TraesCS2A01G508700 chr2A 94.000 50 1 1 396 445 154126252 154126205 1.370000e-09 75.0
9 TraesCS2A01G508700 chr2B 87.897 1669 105 39 997 2638 732893037 732894635 0.000000e+00 1873.0
10 TraesCS2A01G508700 chr2B 93.788 998 50 4 967 1960 732592614 732591625 0.000000e+00 1489.0
11 TraesCS2A01G508700 chr2B 92.197 974 55 10 1 962 732593620 732592656 0.000000e+00 1358.0
12 TraesCS2A01G508700 chr2B 93.115 610 29 2 1958 2555 732586093 732585485 0.000000e+00 881.0
13 TraesCS2A01G508700 chr2B 83.658 924 109 17 1631 2527 732865352 732866260 0.000000e+00 832.0
14 TraesCS2A01G508700 chr2B 86.779 416 40 6 989 1398 732864670 732865076 1.940000e-122 449.0
15 TraesCS2A01G508700 chr2B 81.818 165 15 10 492 650 732892461 732892616 1.340000e-24 124.0
16 TraesCS2A01G508700 chr2B 92.063 63 2 3 2684 2746 732580654 732580595 6.320000e-13 86.1
17 TraesCS2A01G508700 chr2B 91.837 49 4 0 2559 2607 732584294 732584246 6.360000e-08 69.4
18 TraesCS2A01G508700 chr2D 83.658 924 109 16 1631 2527 602648830 602649738 0.000000e+00 832.0
19 TraesCS2A01G508700 chr2D 82.154 947 130 22 1645 2572 602253360 602252434 0.000000e+00 776.0
20 TraesCS2A01G508700 chr2D 86.797 409 45 8 1026 1425 602648287 602648695 6.990000e-122 448.0
21 TraesCS2A01G508700 chr2D 97.778 45 1 0 396 440 27876356 27876400 1.060000e-10 78.7
22 TraesCS2A01G508700 chr3A 76.357 516 88 18 1795 2294 8233081 8232584 2.740000e-61 246.0
23 TraesCS2A01G508700 chr7A 80.838 167 22 4 29 193 70203451 70203293 4.820000e-24 122.0
24 TraesCS2A01G508700 chr5B 82.759 145 14 7 17 159 487233103 487233238 6.230000e-23 119.0
25 TraesCS2A01G508700 chr5A 79.769 173 25 4 27 197 552672598 552672762 2.240000e-22 117.0
26 TraesCS2A01G508700 chr3D 97.778 45 1 0 396 440 582147201 582147245 1.060000e-10 78.7
27 TraesCS2A01G508700 chr6B 95.833 48 1 1 396 442 136784329 136784282 3.800000e-10 76.8
28 TraesCS2A01G508700 chr1A 94.000 50 2 1 389 438 489235874 489235922 1.370000e-09 75.0
29 TraesCS2A01G508700 chr1A 78.571 98 17 4 2196 2291 99868424 99868329 1.060000e-05 62.1
30 TraesCS2A01G508700 chr6A 89.655 58 4 2 381 438 596304318 596304263 4.920000e-09 73.1
31 TraesCS2A01G508700 chr5D 75.155 161 26 12 27 184 21457445 21457296 2.960000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G508700 chr2A 734986247 734989798 3551 True 6560.0 6560 100.000000 1 3552 1 chr2A.!!$R3 3551
1 TraesCS2A01G508700 chr2A 735244328 735245926 1598 False 1890.0 1890 88.055000 997 2638 1 chr2A.!!$F2 1641
2 TraesCS2A01G508700 chr2A 735238349 735239874 1525 False 646.5 845 84.658500 967 2558 2 chr2A.!!$F3 1591
3 TraesCS2A01G508700 chr2A 735261439 735262920 1481 False 455.0 776 79.049500 1085 2572 2 chr2A.!!$F4 1487
4 TraesCS2A01G508700 chr2B 732591625 732593620 1995 True 1423.5 1489 92.992500 1 1960 2 chr2B.!!$R2 1959
5 TraesCS2A01G508700 chr2B 732892461 732894635 2174 False 998.5 1873 84.857500 492 2638 2 chr2B.!!$F2 2146
6 TraesCS2A01G508700 chr2B 732864670 732866260 1590 False 640.5 832 85.218500 989 2527 2 chr2B.!!$F1 1538
7 TraesCS2A01G508700 chr2B 732580595 732586093 5498 True 345.5 881 92.338333 1958 2746 3 chr2B.!!$R1 788
8 TraesCS2A01G508700 chr2D 602252434 602253360 926 True 776.0 776 82.154000 1645 2572 1 chr2D.!!$R1 927
9 TraesCS2A01G508700 chr2D 602648287 602649738 1451 False 640.0 832 85.227500 1026 2527 2 chr2D.!!$F2 1501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.035056 AGTGGCTTACTGATGGTGCC 60.035 55.0 0.0 0.0 43.49 5.01 F
1083 1222 0.037326 TGGTCACGAAGATCACCAGC 60.037 55.0 0.0 0.0 33.83 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1900 1.068250 GACCATCGCAGGCTCCTAC 59.932 63.158 0.0 0.0 0.0 3.18 R
2645 7771 0.193574 AGACCCTGTTCCCCTCAAGA 59.806 55.000 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.869579 AGACATCTTAACAACTCCATGTGT 58.130 37.500 0.00 0.00 32.81 3.72
46 47 0.313043 CTGGCCTTGACAAACAGCAG 59.687 55.000 3.32 0.00 0.00 4.24
87 88 0.035056 AGTGGCTTACTGATGGTGCC 60.035 55.000 0.00 0.00 43.49 5.01
107 108 3.873952 GCCGATGAAGCTACTTTGATTCT 59.126 43.478 0.00 0.00 33.95 2.40
109 110 4.260538 CCGATGAAGCTACTTTGATTCTGC 60.261 45.833 0.00 0.00 33.95 4.26
120 121 3.325293 TTGATTCTGCTGAGGACTGAC 57.675 47.619 0.00 0.00 0.00 3.51
180 182 2.615912 GCACCCTGCTGCTATTAAGAAG 59.384 50.000 0.00 0.00 40.96 2.85
234 236 3.406595 GAGAGCCCATTCCCACCGG 62.407 68.421 0.00 0.00 0.00 5.28
245 247 3.402681 CCACCGGGCTCATGGACT 61.403 66.667 6.32 0.00 35.33 3.85
267 269 2.366393 TGGCCTGCCAGCGATTCTA 61.366 57.895 6.80 0.00 41.89 2.10
268 270 1.153168 GGCCTGCCAGCGATTCTAA 60.153 57.895 2.58 0.00 35.81 2.10
326 328 1.756538 AGCTTGTGTCTTGGGTTTTGG 59.243 47.619 0.00 0.00 0.00 3.28
331 333 3.436243 TGTGTCTTGGGTTTTGGAAAGT 58.564 40.909 0.00 0.00 0.00 2.66
341 343 6.310941 TGGGTTTTGGAAAGTGAATAGATCA 58.689 36.000 0.00 0.00 35.05 2.92
356 358 2.923121 AGATCATGATTTGGGACCGTG 58.077 47.619 10.14 0.00 0.00 4.94
359 361 1.628340 TCATGATTTGGGACCGTGTCT 59.372 47.619 0.00 0.00 32.47 3.41
425 429 5.743636 ATTGTTTGGATTGCTTACCACAT 57.256 34.783 0.00 0.00 35.81 3.21
430 434 6.127758 TGTTTGGATTGCTTACCACATATGTC 60.128 38.462 5.07 0.00 35.81 3.06
432 436 5.693961 TGGATTGCTTACCACATATGTCAT 58.306 37.500 5.07 0.00 0.00 3.06
433 437 5.532032 TGGATTGCTTACCACATATGTCATG 59.468 40.000 5.07 0.13 0.00 3.07
497 501 5.873179 TTTGTTCACTCGGTTATTCCATC 57.127 39.130 0.00 0.00 35.57 3.51
507 511 3.189287 CGGTTATTCCATCTAGCCAATGC 59.811 47.826 0.00 0.00 35.57 3.56
598 610 9.423061 ACAAATCCATCTAAAGTTGCATAAAAC 57.577 29.630 0.00 0.00 0.00 2.43
650 670 9.696917 ATTAGATGAAAATTGGTGTCAAAGTTC 57.303 29.630 0.00 0.00 36.36 3.01
651 671 7.111247 AGATGAAAATTGGTGTCAAAGTTCA 57.889 32.000 8.95 8.95 40.61 3.18
654 674 7.536895 TGAAAATTGGTGTCAAAGTTCATTG 57.463 32.000 0.00 0.00 36.08 2.82
725 760 4.171754 GCTCTCCTCATTTCAAAATGCAC 58.828 43.478 10.02 0.00 44.15 4.57
747 793 4.023707 ACTGCACATTAGAGTTGACTTTGC 60.024 41.667 0.00 0.00 0.00 3.68
795 841 8.438676 AAAACTATCAGCATCTACAATACCAC 57.561 34.615 0.00 0.00 0.00 4.16
804 850 8.448615 CAGCATCTACAATACCACATCAATATG 58.551 37.037 0.00 0.00 39.17 1.78
888 946 1.266175 ACTATAACGCGGATCGGAGTG 59.734 52.381 12.47 2.34 43.86 3.51
941 1034 5.652891 ACGACCATGTATATATCCACCTCTC 59.347 44.000 0.00 0.00 0.00 3.20
956 1049 2.230660 CCTCTCCTTGTTGTGGGTTTC 58.769 52.381 0.00 0.00 0.00 2.78
962 1055 3.131933 TCCTTGTTGTGGGTTTCAATGTG 59.868 43.478 0.00 0.00 0.00 3.21
965 1095 0.755686 TTGTGGGTTTCAATGTGGCC 59.244 50.000 0.00 0.00 0.00 5.36
980 1110 3.174779 TGTGGCCAGTTGGTATACAGTA 58.825 45.455 5.11 0.00 37.57 2.74
981 1111 3.055675 TGTGGCCAGTTGGTATACAGTAC 60.056 47.826 5.11 0.00 37.57 2.73
982 1112 3.197116 GTGGCCAGTTGGTATACAGTACT 59.803 47.826 5.11 1.88 37.57 2.73
1083 1222 0.037326 TGGTCACGAAGATCACCAGC 60.037 55.000 0.00 0.00 33.83 4.85
1263 1408 2.275547 CTTGCCAGAAATGGAGCGCC 62.276 60.000 2.29 0.00 0.00 6.53
1346 1491 0.827368 GACTCCCACCTCATCCTCAC 59.173 60.000 0.00 0.00 0.00 3.51
1398 1552 1.193203 CGCCTCGATCAAATCATTCCG 59.807 52.381 0.00 0.00 0.00 4.30
1462 1628 1.596203 GCTGCATCTGCTATGGCGA 60.596 57.895 3.53 0.00 42.66 5.54
1504 1682 1.078759 GCAGCTGCAGGTACGTACAG 61.079 60.000 33.36 18.37 41.59 2.74
1541 1826 6.089249 AGAACCATTTTCATCTTGTTGGTC 57.911 37.500 0.00 0.00 36.49 4.02
1582 1900 2.804527 CTGTGCCATCGTCTTCCATATG 59.195 50.000 0.00 0.00 0.00 1.78
1606 1945 1.521681 GCCTGCGATGGTCCAGTAC 60.522 63.158 0.00 0.00 0.00 2.73
1643 1982 2.050351 CTGTGGAGTTCGCGTCGT 60.050 61.111 5.77 0.00 0.00 4.34
1653 1992 4.219846 CGCGTCGTCGGAGATCGT 62.220 66.667 3.90 0.00 40.67 3.73
1720 2059 0.947180 CAACGGTGTACAAGGGTCGG 60.947 60.000 0.00 0.00 0.00 4.79
2335 2689 2.034221 GACCCACAGACCTTGGCC 59.966 66.667 0.00 0.00 32.13 5.36
2356 2710 0.819259 GCTTTGCTGCCCCGATCATA 60.819 55.000 0.00 0.00 0.00 2.15
2389 2750 2.359230 GGGTCTGTGCTGGACTGC 60.359 66.667 0.00 0.00 34.47 4.40
2554 2927 4.679662 GTGAGCCTAAGCGACACTAATTA 58.320 43.478 8.63 0.00 46.67 1.40
2595 4154 1.729149 GCCAAGACGTAAACTGCATGC 60.729 52.381 11.82 11.82 0.00 4.06
2603 4162 3.433957 ACGTAAACTGCATGCGTCATAAA 59.566 39.130 14.09 0.00 33.90 1.40
2619 7745 6.636044 GCGTCATAAAGATACGTAGCTTTAGT 59.364 38.462 35.37 25.32 44.31 2.24
2627 7753 9.480053 AAAGATACGTAGCTTTAGTTTGTAACA 57.520 29.630 31.35 0.00 39.82 2.41
2628 7754 8.684973 AGATACGTAGCTTTAGTTTGTAACAG 57.315 34.615 7.71 0.00 0.00 3.16
2629 7755 7.758528 AGATACGTAGCTTTAGTTTGTAACAGG 59.241 37.037 7.71 0.00 0.00 4.00
2630 7756 4.992951 ACGTAGCTTTAGTTTGTAACAGGG 59.007 41.667 0.00 0.00 0.00 4.45
2631 7757 4.992951 CGTAGCTTTAGTTTGTAACAGGGT 59.007 41.667 0.00 0.00 0.00 4.34
2632 7758 5.119743 CGTAGCTTTAGTTTGTAACAGGGTC 59.880 44.000 0.00 0.00 0.00 4.46
2633 7759 5.306114 AGCTTTAGTTTGTAACAGGGTCT 57.694 39.130 0.00 0.00 0.00 3.85
2634 7760 6.429521 AGCTTTAGTTTGTAACAGGGTCTA 57.570 37.500 0.00 0.00 0.00 2.59
2635 7761 6.465084 AGCTTTAGTTTGTAACAGGGTCTAG 58.535 40.000 0.00 0.00 0.00 2.43
2636 7762 6.042897 AGCTTTAGTTTGTAACAGGGTCTAGT 59.957 38.462 0.00 0.00 0.00 2.57
2637 7763 6.709397 GCTTTAGTTTGTAACAGGGTCTAGTT 59.291 38.462 0.00 0.00 0.00 2.24
2638 7764 7.228108 GCTTTAGTTTGTAACAGGGTCTAGTTT 59.772 37.037 0.00 0.00 0.00 2.66
2639 7765 9.117183 CTTTAGTTTGTAACAGGGTCTAGTTTT 57.883 33.333 0.00 0.00 0.00 2.43
2640 7766 9.465199 TTTAGTTTGTAACAGGGTCTAGTTTTT 57.535 29.630 0.00 0.00 0.00 1.94
2641 7767 7.329588 AGTTTGTAACAGGGTCTAGTTTTTG 57.670 36.000 0.00 0.00 0.00 2.44
2642 7768 6.888088 AGTTTGTAACAGGGTCTAGTTTTTGT 59.112 34.615 0.00 0.00 0.00 2.83
2643 7769 7.395206 AGTTTGTAACAGGGTCTAGTTTTTGTT 59.605 33.333 9.25 9.25 33.74 2.83
2644 7770 7.706100 TTGTAACAGGGTCTAGTTTTTGTTT 57.294 32.000 9.46 0.00 31.84 2.83
2645 7771 7.706100 TGTAACAGGGTCTAGTTTTTGTTTT 57.294 32.000 9.46 0.00 31.84 2.43
2646 7772 7.764331 TGTAACAGGGTCTAGTTTTTGTTTTC 58.236 34.615 9.46 6.14 31.84 2.29
2647 7773 7.612633 TGTAACAGGGTCTAGTTTTTGTTTTCT 59.387 33.333 9.46 0.00 31.84 2.52
2648 7774 7.476540 AACAGGGTCTAGTTTTTGTTTTCTT 57.523 32.000 0.00 0.00 0.00 2.52
2649 7775 6.863275 ACAGGGTCTAGTTTTTGTTTTCTTG 58.137 36.000 0.00 0.00 0.00 3.02
2650 7776 6.661805 ACAGGGTCTAGTTTTTGTTTTCTTGA 59.338 34.615 0.00 0.00 0.00 3.02
2651 7777 7.148069 ACAGGGTCTAGTTTTTGTTTTCTTGAG 60.148 37.037 0.00 0.00 0.00 3.02
2652 7778 6.321435 AGGGTCTAGTTTTTGTTTTCTTGAGG 59.679 38.462 0.00 0.00 0.00 3.86
2653 7779 6.461092 GGGTCTAGTTTTTGTTTTCTTGAGGG 60.461 42.308 0.00 0.00 0.00 4.30
2654 7780 6.461092 GGTCTAGTTTTTGTTTTCTTGAGGGG 60.461 42.308 0.00 0.00 0.00 4.79
2655 7781 6.320418 GTCTAGTTTTTGTTTTCTTGAGGGGA 59.680 38.462 0.00 0.00 0.00 4.81
2659 7785 5.337578 TTTTGTTTTCTTGAGGGGAACAG 57.662 39.130 0.00 0.00 32.50 3.16
2669 7795 2.384375 TGAGGGGAACAGGGTCTAGTTA 59.616 50.000 0.00 0.00 0.00 2.24
2670 7796 3.181404 TGAGGGGAACAGGGTCTAGTTAA 60.181 47.826 0.00 0.00 0.00 2.01
2671 7797 3.842436 GAGGGGAACAGGGTCTAGTTAAA 59.158 47.826 0.00 0.00 0.00 1.52
2672 7798 4.245308 AGGGGAACAGGGTCTAGTTAAAA 58.755 43.478 0.00 0.00 0.00 1.52
2673 7799 4.042560 AGGGGAACAGGGTCTAGTTAAAAC 59.957 45.833 0.00 0.00 0.00 2.43
2674 7800 4.202493 GGGGAACAGGGTCTAGTTAAAACA 60.202 45.833 0.00 0.00 0.00 2.83
2675 7801 5.001874 GGGAACAGGGTCTAGTTAAAACAG 58.998 45.833 0.00 0.00 0.00 3.16
2676 7802 5.001874 GGAACAGGGTCTAGTTAAAACAGG 58.998 45.833 0.00 0.00 0.00 4.00
2677 7803 4.017177 ACAGGGTCTAGTTAAAACAGGC 57.983 45.455 0.00 0.00 0.00 4.85
2678 7804 3.244805 ACAGGGTCTAGTTAAAACAGGCC 60.245 47.826 0.00 0.00 33.75 5.19
2679 7805 2.983898 AGGGTCTAGTTAAAACAGGCCA 59.016 45.455 5.01 0.00 35.16 5.36
2680 7806 3.079578 GGGTCTAGTTAAAACAGGCCAC 58.920 50.000 5.01 0.00 35.16 5.01
2681 7807 3.244805 GGGTCTAGTTAAAACAGGCCACT 60.245 47.826 5.01 0.00 35.16 4.00
2682 7808 4.001652 GGTCTAGTTAAAACAGGCCACTC 58.998 47.826 5.01 0.00 34.28 3.51
2722 7848 3.553508 GGTGCTGAAATGAAATGTGCTGT 60.554 43.478 0.00 0.00 0.00 4.40
2723 7849 4.053295 GTGCTGAAATGAAATGTGCTGTT 58.947 39.130 0.00 0.00 0.00 3.16
2734 7860 7.446001 TGAAATGTGCTGTTGTGAACATATA 57.554 32.000 0.00 0.00 41.26 0.86
2736 7862 9.171877 TGAAATGTGCTGTTGTGAACATATATA 57.828 29.630 0.00 0.00 41.26 0.86
2741 7867 8.620416 TGTGCTGTTGTGAACATATATATTTCC 58.380 33.333 11.70 6.93 41.26 3.13
2742 7868 8.620416 GTGCTGTTGTGAACATATATATTTCCA 58.380 33.333 11.70 8.46 41.26 3.53
2743 7869 9.183368 TGCTGTTGTGAACATATATATTTCCAA 57.817 29.630 11.70 11.72 41.26 3.53
2744 7870 9.669353 GCTGTTGTGAACATATATATTTCCAAG 57.331 33.333 11.70 7.99 41.26 3.61
2750 7876 9.450807 GTGAACATATATATTTCCAAGTTGTGC 57.549 33.333 1.45 0.00 0.00 4.57
2751 7877 9.183368 TGAACATATATATTTCCAAGTTGTGCA 57.817 29.630 1.45 0.00 0.00 4.57
2761 7887 4.275838 CCAAGTTGTGCAAAAATTGGTG 57.724 40.909 31.67 14.20 45.67 4.17
2762 7888 3.688673 CCAAGTTGTGCAAAAATTGGTGT 59.311 39.130 31.67 0.00 45.67 4.16
2763 7889 4.201802 CCAAGTTGTGCAAAAATTGGTGTC 60.202 41.667 31.67 1.43 45.67 3.67
2764 7890 3.186119 AGTTGTGCAAAAATTGGTGTCG 58.814 40.909 0.00 0.00 0.00 4.35
2765 7891 2.926838 GTTGTGCAAAAATTGGTGTCGT 59.073 40.909 0.00 0.00 0.00 4.34
2766 7892 2.534298 TGTGCAAAAATTGGTGTCGTG 58.466 42.857 0.00 0.00 0.00 4.35
2767 7893 2.094494 TGTGCAAAAATTGGTGTCGTGT 60.094 40.909 0.00 0.00 0.00 4.49
2768 7894 2.926838 GTGCAAAAATTGGTGTCGTGTT 59.073 40.909 0.00 0.00 0.00 3.32
2769 7895 3.369451 GTGCAAAAATTGGTGTCGTGTTT 59.631 39.130 0.00 0.00 0.00 2.83
2770 7896 3.369147 TGCAAAAATTGGTGTCGTGTTTG 59.631 39.130 0.00 0.00 0.00 2.93
2771 7897 3.783873 GCAAAAATTGGTGTCGTGTTTGC 60.784 43.478 0.00 0.00 41.54 3.68
2772 7898 3.518634 AAAATTGGTGTCGTGTTTGCT 57.481 38.095 0.00 0.00 0.00 3.91
2773 7899 3.518634 AAATTGGTGTCGTGTTTGCTT 57.481 38.095 0.00 0.00 0.00 3.91
2774 7900 2.774439 ATTGGTGTCGTGTTTGCTTC 57.226 45.000 0.00 0.00 0.00 3.86
2775 7901 1.454201 TTGGTGTCGTGTTTGCTTCA 58.546 45.000 0.00 0.00 0.00 3.02
2776 7902 1.674359 TGGTGTCGTGTTTGCTTCAT 58.326 45.000 0.00 0.00 0.00 2.57
2777 7903 1.333308 TGGTGTCGTGTTTGCTTCATG 59.667 47.619 0.00 0.00 0.00 3.07
2778 7904 1.398595 GTGTCGTGTTTGCTTCATGC 58.601 50.000 0.00 0.00 43.25 4.06
2779 7905 0.310543 TGTCGTGTTTGCTTCATGCC 59.689 50.000 0.00 0.00 42.00 4.40
2780 7906 0.593128 GTCGTGTTTGCTTCATGCCT 59.407 50.000 0.00 0.00 42.00 4.75
2781 7907 0.592637 TCGTGTTTGCTTCATGCCTG 59.407 50.000 0.00 0.00 42.00 4.85
2782 7908 1.005294 CGTGTTTGCTTCATGCCTGC 61.005 55.000 0.00 0.00 42.00 4.85
2783 7909 0.316204 GTGTTTGCTTCATGCCTGCT 59.684 50.000 0.00 0.00 42.00 4.24
2784 7910 1.042229 TGTTTGCTTCATGCCTGCTT 58.958 45.000 0.00 0.00 42.00 3.91
2785 7911 1.413445 TGTTTGCTTCATGCCTGCTTT 59.587 42.857 0.00 0.00 42.00 3.51
2786 7912 1.796459 GTTTGCTTCATGCCTGCTTTG 59.204 47.619 0.00 0.00 42.00 2.77
2787 7913 1.330234 TTGCTTCATGCCTGCTTTGA 58.670 45.000 0.00 0.00 42.00 2.69
2788 7914 0.885879 TGCTTCATGCCTGCTTTGAG 59.114 50.000 0.00 0.00 42.00 3.02
2789 7915 1.171308 GCTTCATGCCTGCTTTGAGA 58.829 50.000 0.00 0.00 35.15 3.27
2790 7916 1.749634 GCTTCATGCCTGCTTTGAGAT 59.250 47.619 0.00 0.00 35.15 2.75
2791 7917 2.479730 GCTTCATGCCTGCTTTGAGATG 60.480 50.000 0.00 0.00 35.15 2.90
2792 7918 2.793288 TCATGCCTGCTTTGAGATGA 57.207 45.000 0.00 0.00 0.00 2.92
2793 7919 2.640184 TCATGCCTGCTTTGAGATGAG 58.360 47.619 0.00 0.00 0.00 2.90
2794 7920 1.676529 CATGCCTGCTTTGAGATGAGG 59.323 52.381 0.00 0.00 0.00 3.86
2795 7921 0.694771 TGCCTGCTTTGAGATGAGGT 59.305 50.000 0.00 0.00 0.00 3.85
2796 7922 1.908619 TGCCTGCTTTGAGATGAGGTA 59.091 47.619 0.00 0.00 0.00 3.08
2797 7923 2.507058 TGCCTGCTTTGAGATGAGGTAT 59.493 45.455 0.00 0.00 0.00 2.73
2798 7924 3.054139 TGCCTGCTTTGAGATGAGGTATT 60.054 43.478 0.00 0.00 0.00 1.89
2799 7925 3.950395 GCCTGCTTTGAGATGAGGTATTT 59.050 43.478 0.00 0.00 0.00 1.40
2800 7926 4.201990 GCCTGCTTTGAGATGAGGTATTTG 60.202 45.833 0.00 0.00 0.00 2.32
2801 7927 5.188434 CCTGCTTTGAGATGAGGTATTTGA 58.812 41.667 0.00 0.00 0.00 2.69
2802 7928 5.296283 CCTGCTTTGAGATGAGGTATTTGAG 59.704 44.000 0.00 0.00 0.00 3.02
2803 7929 4.637534 TGCTTTGAGATGAGGTATTTGAGC 59.362 41.667 0.00 0.00 0.00 4.26
2804 7930 4.637534 GCTTTGAGATGAGGTATTTGAGCA 59.362 41.667 0.00 0.00 0.00 4.26
2805 7931 5.298777 GCTTTGAGATGAGGTATTTGAGCAT 59.701 40.000 0.00 0.00 0.00 3.79
2806 7932 6.513066 GCTTTGAGATGAGGTATTTGAGCATC 60.513 42.308 0.00 0.00 36.49 3.91
2807 7933 5.883685 TGAGATGAGGTATTTGAGCATCT 57.116 39.130 0.00 0.00 45.90 2.90
2808 7934 6.244552 TGAGATGAGGTATTTGAGCATCTT 57.755 37.500 0.00 0.00 43.97 2.40
2809 7935 6.286758 TGAGATGAGGTATTTGAGCATCTTC 58.713 40.000 0.00 0.00 43.97 2.87
2810 7936 6.099413 TGAGATGAGGTATTTGAGCATCTTCT 59.901 38.462 0.00 0.00 43.97 2.85
2811 7937 7.288621 TGAGATGAGGTATTTGAGCATCTTCTA 59.711 37.037 0.00 0.00 43.97 2.10
2812 7938 8.204903 AGATGAGGTATTTGAGCATCTTCTAT 57.795 34.615 0.00 0.00 41.99 1.98
2813 7939 9.319060 AGATGAGGTATTTGAGCATCTTCTATA 57.681 33.333 0.00 0.00 41.99 1.31
2899 8025 7.894376 AATGTTTCATAAAATCCACAAGCTG 57.106 32.000 0.00 0.00 0.00 4.24
2900 8026 6.403866 TGTTTCATAAAATCCACAAGCTGT 57.596 33.333 0.00 0.00 0.00 4.40
2901 8027 7.517614 TGTTTCATAAAATCCACAAGCTGTA 57.482 32.000 0.00 0.00 0.00 2.74
2902 8028 7.946207 TGTTTCATAAAATCCACAAGCTGTAA 58.054 30.769 0.00 0.00 0.00 2.41
2903 8029 8.417106 TGTTTCATAAAATCCACAAGCTGTAAA 58.583 29.630 0.00 0.00 0.00 2.01
2904 8030 9.255304 GTTTCATAAAATCCACAAGCTGTAAAA 57.745 29.630 0.00 0.00 0.00 1.52
2905 8031 8.810652 TTCATAAAATCCACAAGCTGTAAAAC 57.189 30.769 0.00 0.00 0.00 2.43
2906 8032 8.177119 TCATAAAATCCACAAGCTGTAAAACT 57.823 30.769 0.00 0.00 0.00 2.66
2907 8033 9.290988 TCATAAAATCCACAAGCTGTAAAACTA 57.709 29.630 0.00 0.00 0.00 2.24
2908 8034 9.341899 CATAAAATCCACAAGCTGTAAAACTAC 57.658 33.333 0.00 0.00 0.00 2.73
2909 8035 6.952773 AAATCCACAAGCTGTAAAACTACA 57.047 33.333 0.00 0.00 0.00 2.74
2910 8036 6.952773 AATCCACAAGCTGTAAAACTACAA 57.047 33.333 0.00 0.00 0.00 2.41
2911 8037 6.952773 ATCCACAAGCTGTAAAACTACAAA 57.047 33.333 0.00 0.00 0.00 2.83
2912 8038 6.126568 TCCACAAGCTGTAAAACTACAAAC 57.873 37.500 0.00 0.00 0.00 2.93
2913 8039 5.648526 TCCACAAGCTGTAAAACTACAAACA 59.351 36.000 0.00 0.00 0.00 2.83
2914 8040 6.151312 TCCACAAGCTGTAAAACTACAAACAA 59.849 34.615 0.00 0.00 0.00 2.83
2915 8041 6.978080 CCACAAGCTGTAAAACTACAAACAAT 59.022 34.615 0.00 0.00 0.00 2.71
2916 8042 7.491048 CCACAAGCTGTAAAACTACAAACAATT 59.509 33.333 0.00 0.00 0.00 2.32
2917 8043 8.531530 CACAAGCTGTAAAACTACAAACAATTC 58.468 33.333 0.00 0.00 0.00 2.17
2918 8044 8.466798 ACAAGCTGTAAAACTACAAACAATTCT 58.533 29.630 0.00 0.00 0.00 2.40
2919 8045 9.301153 CAAGCTGTAAAACTACAAACAATTCTT 57.699 29.630 0.00 0.00 0.00 2.52
2920 8046 9.869757 AAGCTGTAAAACTACAAACAATTCTTT 57.130 25.926 0.00 0.00 0.00 2.52
2921 8047 9.869757 AGCTGTAAAACTACAAACAATTCTTTT 57.130 25.926 0.00 0.00 0.00 2.27
3031 8157 7.692908 AATTAAAACTTGTGTGAAATGTCCG 57.307 32.000 0.00 0.00 0.00 4.79
3032 8158 4.712122 AAAACTTGTGTGAAATGTCCGT 57.288 36.364 0.00 0.00 0.00 4.69
3033 8159 3.691049 AACTTGTGTGAAATGTCCGTG 57.309 42.857 0.00 0.00 0.00 4.94
3034 8160 1.946768 ACTTGTGTGAAATGTCCGTGG 59.053 47.619 0.00 0.00 0.00 4.94
3035 8161 2.217750 CTTGTGTGAAATGTCCGTGGA 58.782 47.619 0.00 0.00 0.00 4.02
3036 8162 2.333688 TGTGTGAAATGTCCGTGGAA 57.666 45.000 0.00 0.00 0.00 3.53
3037 8163 1.944024 TGTGTGAAATGTCCGTGGAAC 59.056 47.619 0.00 0.00 0.00 3.62
3038 8164 1.265905 GTGTGAAATGTCCGTGGAACC 59.734 52.381 0.00 0.00 0.00 3.62
3039 8165 1.142060 TGTGAAATGTCCGTGGAACCT 59.858 47.619 0.00 0.00 0.00 3.50
3040 8166 2.227194 GTGAAATGTCCGTGGAACCTT 58.773 47.619 0.00 0.00 0.00 3.50
3041 8167 2.621526 GTGAAATGTCCGTGGAACCTTT 59.378 45.455 0.00 0.00 0.00 3.11
3042 8168 3.067601 GTGAAATGTCCGTGGAACCTTTT 59.932 43.478 0.00 0.00 0.00 2.27
3043 8169 3.702045 TGAAATGTCCGTGGAACCTTTTT 59.298 39.130 0.00 0.00 0.00 1.94
3044 8170 4.888239 TGAAATGTCCGTGGAACCTTTTTA 59.112 37.500 0.00 0.00 0.00 1.52
3045 8171 5.360144 TGAAATGTCCGTGGAACCTTTTTAA 59.640 36.000 0.00 0.00 0.00 1.52
3046 8172 5.855740 AATGTCCGTGGAACCTTTTTAAA 57.144 34.783 0.00 0.00 0.00 1.52
3047 8173 5.855740 ATGTCCGTGGAACCTTTTTAAAA 57.144 34.783 0.00 0.00 0.00 1.52
3048 8174 5.855740 TGTCCGTGGAACCTTTTTAAAAT 57.144 34.783 0.55 0.00 0.00 1.82
3049 8175 6.223351 TGTCCGTGGAACCTTTTTAAAATT 57.777 33.333 0.55 0.00 0.00 1.82
3050 8176 6.043411 TGTCCGTGGAACCTTTTTAAAATTG 58.957 36.000 0.55 0.00 0.00 2.32
3051 8177 6.127423 TGTCCGTGGAACCTTTTTAAAATTGA 60.127 34.615 0.55 0.00 0.00 2.57
3052 8178 6.926826 GTCCGTGGAACCTTTTTAAAATTGAT 59.073 34.615 0.55 0.00 0.00 2.57
3053 8179 7.439955 GTCCGTGGAACCTTTTTAAAATTGATT 59.560 33.333 0.55 0.00 0.00 2.57
3054 8180 7.439655 TCCGTGGAACCTTTTTAAAATTGATTG 59.560 33.333 0.55 0.00 0.00 2.67
3055 8181 7.439655 CCGTGGAACCTTTTTAAAATTGATTGA 59.560 33.333 0.55 0.00 0.00 2.57
3056 8182 8.987890 CGTGGAACCTTTTTAAAATTGATTGAT 58.012 29.630 0.55 0.00 0.00 2.57
3169 8295 7.856145 ACAATTCACCAAAATAAAAGTTGCA 57.144 28.000 0.00 0.00 0.00 4.08
3170 8296 8.449251 ACAATTCACCAAAATAAAAGTTGCAT 57.551 26.923 0.00 0.00 0.00 3.96
3171 8297 8.901793 ACAATTCACCAAAATAAAAGTTGCATT 58.098 25.926 0.00 0.00 0.00 3.56
3277 8403 7.898014 ATATATACGAATAGCCCATGAGTGA 57.102 36.000 0.00 0.00 0.00 3.41
3278 8404 2.604046 ACGAATAGCCCATGAGTGAC 57.396 50.000 0.00 0.00 0.00 3.67
3279 8405 1.139058 ACGAATAGCCCATGAGTGACC 59.861 52.381 0.00 0.00 0.00 4.02
3280 8406 1.138859 CGAATAGCCCATGAGTGACCA 59.861 52.381 0.00 0.00 0.00 4.02
3281 8407 2.565841 GAATAGCCCATGAGTGACCAC 58.434 52.381 0.00 0.00 0.00 4.16
3282 8408 1.583556 ATAGCCCATGAGTGACCACA 58.416 50.000 0.00 0.00 0.00 4.17
3283 8409 0.613260 TAGCCCATGAGTGACCACAC 59.387 55.000 0.00 0.00 46.24 3.82
3296 8422 5.272167 GTGACCACACGAATTTTAATCGA 57.728 39.130 4.07 0.00 42.76 3.59
3297 8423 5.864986 GTGACCACACGAATTTTAATCGAT 58.135 37.500 4.07 0.00 42.76 3.59
3298 8424 6.311723 GTGACCACACGAATTTTAATCGATT 58.688 36.000 16.15 16.15 42.76 3.34
3299 8425 6.464834 GTGACCACACGAATTTTAATCGATTC 59.535 38.462 15.25 0.00 42.76 2.52
3300 8426 5.875930 ACCACACGAATTTTAATCGATTCC 58.124 37.500 15.25 0.00 42.76 3.01
3301 8427 5.646360 ACCACACGAATTTTAATCGATTCCT 59.354 36.000 15.25 0.00 42.76 3.36
3302 8428 6.819649 ACCACACGAATTTTAATCGATTCCTA 59.180 34.615 15.25 1.10 42.76 2.94
3303 8429 7.334921 ACCACACGAATTTTAATCGATTCCTAA 59.665 33.333 15.25 7.84 42.76 2.69
3304 8430 8.342634 CCACACGAATTTTAATCGATTCCTAAT 58.657 33.333 15.25 9.77 42.76 1.73
3383 8509 9.979578 ATTTAACTACTTCAATGCATTTTGTGA 57.020 25.926 9.83 1.36 0.00 3.58
3384 8510 8.795786 TTAACTACTTCAATGCATTTTGTGAC 57.204 30.769 9.83 0.00 0.00 3.67
3385 8511 6.389830 ACTACTTCAATGCATTTTGTGACA 57.610 33.333 9.83 0.00 0.00 3.58
3386 8512 6.441274 ACTACTTCAATGCATTTTGTGACAG 58.559 36.000 9.83 7.72 0.00 3.51
3387 8513 5.266733 ACTTCAATGCATTTTGTGACAGT 57.733 34.783 9.83 8.28 0.00 3.55
3388 8514 5.663456 ACTTCAATGCATTTTGTGACAGTT 58.337 33.333 9.83 0.00 0.00 3.16
3389 8515 6.108015 ACTTCAATGCATTTTGTGACAGTTT 58.892 32.000 9.83 0.00 0.00 2.66
3390 8516 6.594937 ACTTCAATGCATTTTGTGACAGTTTT 59.405 30.769 9.83 0.00 0.00 2.43
3391 8517 6.981762 TCAATGCATTTTGTGACAGTTTTT 57.018 29.167 9.83 0.00 0.00 1.94
3440 8566 7.899648 TTCTATTAAAAGATCGAGGACTCCT 57.100 36.000 0.00 0.00 36.03 3.69
3441 8567 7.899648 TCTATTAAAAGATCGAGGACTCCTT 57.100 36.000 0.00 0.00 31.76 3.36
3442 8568 8.307582 TCTATTAAAAGATCGAGGACTCCTTT 57.692 34.615 0.00 0.00 31.76 3.11
3443 8569 8.198109 TCTATTAAAAGATCGAGGACTCCTTTG 58.802 37.037 0.00 0.00 31.76 2.77
3444 8570 4.891992 AAAAGATCGAGGACTCCTTTGA 57.108 40.909 0.00 1.30 31.76 2.69
3445 8571 5.428184 AAAAGATCGAGGACTCCTTTGAT 57.572 39.130 11.67 11.67 33.67 2.57
3446 8572 5.428184 AAAGATCGAGGACTCCTTTGATT 57.572 39.130 12.65 0.55 32.01 2.57
3447 8573 4.664150 AGATCGAGGACTCCTTTGATTC 57.336 45.455 12.65 8.04 32.01 2.52
3448 8574 4.026744 AGATCGAGGACTCCTTTGATTCA 58.973 43.478 12.65 0.00 32.01 2.57
3449 8575 4.467795 AGATCGAGGACTCCTTTGATTCAA 59.532 41.667 12.65 0.00 32.01 2.69
3450 8576 4.617253 TCGAGGACTCCTTTGATTCAAA 57.383 40.909 11.19 11.19 31.76 2.69
3465 8591 9.485206 CTTTGATTCAAAGGAATTCACTTGATT 57.515 29.630 25.14 14.76 44.75 2.57
3466 8592 9.835389 TTTGATTCAAAGGAATTCACTTGATTT 57.165 25.926 17.38 10.99 43.69 2.17
3467 8593 9.480053 TTGATTCAAAGGAATTCACTTGATTTC 57.520 29.630 17.38 16.60 43.69 2.17
3468 8594 7.809331 TGATTCAAAGGAATTCACTTGATTTCG 59.191 33.333 17.38 0.00 43.69 3.46
3469 8595 6.633500 TCAAAGGAATTCACTTGATTTCGT 57.367 33.333 14.28 5.81 36.07 3.85
3470 8596 7.038154 TCAAAGGAATTCACTTGATTTCGTT 57.962 32.000 14.28 12.61 40.81 3.85
3471 8597 6.917477 TCAAAGGAATTCACTTGATTTCGTTG 59.083 34.615 16.51 15.66 39.89 4.10
3472 8598 5.376854 AGGAATTCACTTGATTTCGTTGG 57.623 39.130 7.93 0.00 36.07 3.77
3473 8599 4.218417 AGGAATTCACTTGATTTCGTTGGG 59.782 41.667 7.93 0.00 36.07 4.12
3474 8600 4.485163 GAATTCACTTGATTTCGTTGGGG 58.515 43.478 0.00 0.00 0.00 4.96
3475 8601 1.904287 TCACTTGATTTCGTTGGGGG 58.096 50.000 0.00 0.00 0.00 5.40
3476 8602 1.422024 TCACTTGATTTCGTTGGGGGA 59.578 47.619 0.00 0.00 0.00 4.81
3477 8603 2.158593 TCACTTGATTTCGTTGGGGGAA 60.159 45.455 0.00 0.00 0.00 3.97
3478 8604 2.825532 CACTTGATTTCGTTGGGGGAAT 59.174 45.455 0.00 0.00 0.00 3.01
3479 8605 3.258123 CACTTGATTTCGTTGGGGGAATT 59.742 43.478 0.00 0.00 0.00 2.17
3480 8606 3.901222 ACTTGATTTCGTTGGGGGAATTT 59.099 39.130 0.00 0.00 0.00 1.82
3481 8607 4.346709 ACTTGATTTCGTTGGGGGAATTTT 59.653 37.500 0.00 0.00 0.00 1.82
3482 8608 4.965200 TGATTTCGTTGGGGGAATTTTT 57.035 36.364 0.00 0.00 0.00 1.94
3503 8629 5.350504 TTTTGAGCAAAATTGTTGGAGGA 57.649 34.783 4.39 0.00 35.57 3.71
3504 8630 5.549742 TTTGAGCAAAATTGTTGGAGGAT 57.450 34.783 0.00 0.00 0.00 3.24
3505 8631 5.549742 TTGAGCAAAATTGTTGGAGGATT 57.450 34.783 0.00 0.00 0.00 3.01
3506 8632 5.549742 TGAGCAAAATTGTTGGAGGATTT 57.450 34.783 0.00 0.00 0.00 2.17
3507 8633 5.299148 TGAGCAAAATTGTTGGAGGATTTG 58.701 37.500 0.00 0.00 0.00 2.32
3508 8634 5.070180 TGAGCAAAATTGTTGGAGGATTTGA 59.930 36.000 0.00 0.00 31.23 2.69
3509 8635 5.927819 AGCAAAATTGTTGGAGGATTTGAA 58.072 33.333 0.00 0.00 31.23 2.69
3510 8636 6.536447 AGCAAAATTGTTGGAGGATTTGAAT 58.464 32.000 0.00 0.00 31.23 2.57
3511 8637 6.652062 AGCAAAATTGTTGGAGGATTTGAATC 59.348 34.615 0.00 0.00 31.23 2.52
3512 8638 6.652062 GCAAAATTGTTGGAGGATTTGAATCT 59.348 34.615 3.94 0.00 35.73 2.40
3513 8639 7.173735 GCAAAATTGTTGGAGGATTTGAATCTT 59.826 33.333 3.94 0.00 35.73 2.40
3514 8640 9.059260 CAAAATTGTTGGAGGATTTGAATCTTT 57.941 29.630 3.94 0.00 35.73 2.52
3516 8642 9.710900 AAATTGTTGGAGGATTTGAATCTTTAC 57.289 29.630 3.94 0.00 35.73 2.01
3517 8643 6.494893 TGTTGGAGGATTTGAATCTTTACG 57.505 37.500 3.94 0.00 35.73 3.18
3518 8644 6.234920 TGTTGGAGGATTTGAATCTTTACGA 58.765 36.000 3.94 0.00 35.73 3.43
3519 8645 6.712998 TGTTGGAGGATTTGAATCTTTACGAA 59.287 34.615 3.94 0.00 35.73 3.85
3520 8646 7.393234 TGTTGGAGGATTTGAATCTTTACGAAT 59.607 33.333 3.94 0.00 35.73 3.34
3521 8647 7.553881 TGGAGGATTTGAATCTTTACGAATC 57.446 36.000 3.94 0.00 36.64 2.52
3522 8648 7.338710 TGGAGGATTTGAATCTTTACGAATCT 58.661 34.615 0.00 0.00 37.19 2.40
3523 8649 7.829211 TGGAGGATTTGAATCTTTACGAATCTT 59.171 33.333 0.00 0.00 37.19 2.40
3524 8650 8.678199 GGAGGATTTGAATCTTTACGAATCTTT 58.322 33.333 0.00 0.00 37.19 2.52
3525 8651 9.709600 GAGGATTTGAATCTTTACGAATCTTTC 57.290 33.333 0.00 0.00 37.19 2.62
3526 8652 8.678199 AGGATTTGAATCTTTACGAATCTTTCC 58.322 33.333 0.00 0.00 37.19 3.13
3527 8653 8.678199 GGATTTGAATCTTTACGAATCTTTCCT 58.322 33.333 0.00 0.00 37.19 3.36
3528 8654 9.495754 GATTTGAATCTTTACGAATCTTTCCTG 57.504 33.333 0.00 0.00 35.34 3.86
3529 8655 6.422776 TGAATCTTTACGAATCTTTCCTGC 57.577 37.500 0.00 0.00 0.00 4.85
3530 8656 5.937540 TGAATCTTTACGAATCTTTCCTGCA 59.062 36.000 0.00 0.00 0.00 4.41
3531 8657 6.429692 TGAATCTTTACGAATCTTTCCTGCAA 59.570 34.615 0.00 0.00 0.00 4.08
3532 8658 7.121168 TGAATCTTTACGAATCTTTCCTGCAAT 59.879 33.333 0.00 0.00 0.00 3.56
3533 8659 6.182039 TCTTTACGAATCTTTCCTGCAATG 57.818 37.500 0.00 0.00 0.00 2.82
3534 8660 4.963276 TTACGAATCTTTCCTGCAATGG 57.037 40.909 0.00 0.00 0.00 3.16
3535 8661 2.795329 ACGAATCTTTCCTGCAATGGT 58.205 42.857 0.00 0.00 0.00 3.55
3536 8662 2.749621 ACGAATCTTTCCTGCAATGGTC 59.250 45.455 0.00 0.00 0.00 4.02
3537 8663 2.749076 CGAATCTTTCCTGCAATGGTCA 59.251 45.455 0.00 0.00 0.00 4.02
3538 8664 3.426695 CGAATCTTTCCTGCAATGGTCAC 60.427 47.826 0.00 0.00 0.00 3.67
3539 8665 2.957402 TCTTTCCTGCAATGGTCACT 57.043 45.000 0.00 0.00 0.00 3.41
3540 8666 3.228188 TCTTTCCTGCAATGGTCACTT 57.772 42.857 0.00 0.00 0.00 3.16
3541 8667 2.886523 TCTTTCCTGCAATGGTCACTTG 59.113 45.455 0.00 0.00 0.00 3.16
3542 8668 2.655090 TTCCTGCAATGGTCACTTGA 57.345 45.000 0.00 0.00 0.00 3.02
3543 8669 2.885135 TCCTGCAATGGTCACTTGAT 57.115 45.000 0.00 0.00 0.00 2.57
3544 8670 3.159213 TCCTGCAATGGTCACTTGATT 57.841 42.857 0.00 0.00 0.00 2.57
3545 8671 3.084039 TCCTGCAATGGTCACTTGATTC 58.916 45.455 0.00 0.00 0.00 2.52
3546 8672 3.087031 CCTGCAATGGTCACTTGATTCT 58.913 45.455 0.00 0.00 0.00 2.40
3547 8673 3.508793 CCTGCAATGGTCACTTGATTCTT 59.491 43.478 0.00 0.00 0.00 2.52
3548 8674 4.482386 CTGCAATGGTCACTTGATTCTTG 58.518 43.478 0.00 0.00 0.00 3.02
3549 8675 3.256383 TGCAATGGTCACTTGATTCTTGG 59.744 43.478 0.00 0.00 0.00 3.61
3550 8676 3.367703 GCAATGGTCACTTGATTCTTGGG 60.368 47.826 0.00 0.00 0.00 4.12
3551 8677 4.081406 CAATGGTCACTTGATTCTTGGGA 58.919 43.478 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.558321 GGCCAGTACACATGGAGTTGTTA 60.558 47.826 0.00 0.00 40.51 2.41
22 23 2.290641 CTGTTTGTCAAGGCCAGTACAC 59.709 50.000 5.01 0.00 0.00 2.90
25 26 1.133945 TGCTGTTTGTCAAGGCCAGTA 60.134 47.619 5.01 4.27 0.00 2.74
65 66 2.783135 CACCATCAGTAAGCCACTTGT 58.217 47.619 0.00 0.00 34.26 3.16
80 81 0.833287 AGTAGCTTCATCGGCACCAT 59.167 50.000 0.00 0.00 0.00 3.55
87 88 4.569966 AGCAGAATCAAAGTAGCTTCATCG 59.430 41.667 0.00 0.00 0.00 3.84
107 108 1.079612 CGCATGTCAGTCCTCAGCA 60.080 57.895 0.00 0.00 0.00 4.41
109 110 1.135721 TCATCGCATGTCAGTCCTCAG 59.864 52.381 0.00 0.00 0.00 3.35
155 157 0.040204 AATAGCAGCAGGGTGCCTTT 59.960 50.000 18.77 10.52 46.52 3.11
180 182 7.770897 ACTCACATGTCTATTTTCCCATACTTC 59.229 37.037 0.00 0.00 0.00 3.01
200 202 2.427453 GCTCTCCTTTCGGATACTCACA 59.573 50.000 0.00 0.00 39.01 3.58
234 236 1.227793 GCCAGCTAGTCCATGAGCC 60.228 63.158 0.00 0.00 39.65 4.70
237 239 1.976132 GCAGGCCAGCTAGTCCATGA 61.976 60.000 13.78 0.00 0.00 3.07
315 317 6.648879 TCTATTCACTTTCCAAAACCCAAG 57.351 37.500 0.00 0.00 0.00 3.61
316 318 6.780031 TGATCTATTCACTTTCCAAAACCCAA 59.220 34.615 0.00 0.00 0.00 4.12
326 328 8.348507 GTCCCAAATCATGATCTATTCACTTTC 58.651 37.037 9.06 0.00 37.11 2.62
331 333 5.163205 ACGGTCCCAAATCATGATCTATTCA 60.163 40.000 9.06 0.00 39.12 2.57
341 343 2.879103 AAGACACGGTCCCAAATCAT 57.121 45.000 1.06 0.00 32.18 2.45
406 410 6.127758 TGACATATGTGGTAAGCAATCCAAAC 60.128 38.462 14.43 0.00 35.38 2.93
598 610 8.364129 AGTTGGTTAATTAATTTGTTGCACAG 57.636 30.769 5.91 0.00 0.00 3.66
650 670 6.046593 ACAAAATTATCATCTGCCTGCAATG 58.953 36.000 0.00 1.28 0.00 2.82
651 671 6.229936 ACAAAATTATCATCTGCCTGCAAT 57.770 33.333 0.00 0.00 0.00 3.56
654 674 5.979517 GGTAACAAAATTATCATCTGCCTGC 59.020 40.000 0.00 0.00 0.00 4.85
725 760 4.214971 AGCAAAGTCAACTCTAATGTGCAG 59.785 41.667 0.00 0.00 31.95 4.41
869 924 1.401148 CCACTCCGATCCGCGTTATAG 60.401 57.143 4.92 0.00 38.67 1.31
870 925 0.594602 CCACTCCGATCCGCGTTATA 59.405 55.000 4.92 0.00 38.67 0.98
872 927 1.750018 TCCACTCCGATCCGCGTTA 60.750 57.895 4.92 0.00 38.67 3.18
873 928 3.066190 TCCACTCCGATCCGCGTT 61.066 61.111 4.92 0.00 38.67 4.84
874 929 3.823330 GTCCACTCCGATCCGCGT 61.823 66.667 4.92 0.00 38.67 6.01
875 930 4.907034 CGTCCACTCCGATCCGCG 62.907 72.222 0.00 0.00 40.47 6.46
876 931 3.515286 TCGTCCACTCCGATCCGC 61.515 66.667 0.00 0.00 0.00 5.54
877 932 2.408022 GTCGTCCACTCCGATCCG 59.592 66.667 0.00 0.00 36.62 4.18
878 933 2.806237 GGTCGTCCACTCCGATCC 59.194 66.667 0.00 0.00 36.62 3.36
879 934 2.806237 GGGTCGTCCACTCCGATC 59.194 66.667 0.04 0.00 36.62 3.69
880 935 3.138798 CGGGTCGTCCACTCCGAT 61.139 66.667 0.04 0.00 39.78 4.18
941 1034 3.456280 CACATTGAAACCCACAACAAGG 58.544 45.455 0.00 0.00 0.00 3.61
956 1049 3.351740 TGTATACCAACTGGCCACATTG 58.648 45.455 15.43 15.43 39.32 2.82
962 1055 3.197116 ACAGTACTGTATACCAACTGGCC 59.803 47.826 26.91 0.00 42.90 5.36
965 1095 6.452494 AGCTACAGTACTGTATACCAACTG 57.548 41.667 30.78 19.28 44.15 3.16
980 1110 1.187087 GGCACCAGACTAGCTACAGT 58.813 55.000 0.00 0.00 0.00 3.55
981 1111 1.186200 TGGCACCAGACTAGCTACAG 58.814 55.000 0.00 0.00 0.00 2.74
982 1112 1.482182 CATGGCACCAGACTAGCTACA 59.518 52.381 0.00 0.00 0.00 2.74
1263 1408 1.349259 CGTACAAGAACTTCCGGCGG 61.349 60.000 22.51 22.51 0.00 6.13
1346 1491 3.292481 ATGTGGCTGAGCAAGGGGG 62.292 63.158 6.82 0.00 0.00 5.40
1398 1552 4.778143 ACGCTGGTGGGATTCGGC 62.778 66.667 0.00 0.00 0.00 5.54
1504 1682 1.092345 GGTTCTTCTGGCTGCGGATC 61.092 60.000 0.00 0.00 0.00 3.36
1582 1900 1.068250 GACCATCGCAGGCTCCTAC 59.932 63.158 0.00 0.00 0.00 3.18
1606 1945 2.159421 AGGTACATACGTTGAGCTCACG 60.159 50.000 26.39 26.39 0.00 4.35
1643 1982 1.201647 GGTCAAGAACACGATCTCCGA 59.798 52.381 0.00 0.00 41.76 4.55
1653 1992 2.206750 CGAAGTTTCCGGTCAAGAACA 58.793 47.619 0.00 0.00 0.00 3.18
1720 2059 4.373116 TCCAGGCCGTCGTGAAGC 62.373 66.667 0.00 0.00 0.00 3.86
2049 2394 2.203209 GGTGGATGATCCGTGGCC 60.203 66.667 7.03 0.00 40.17 5.36
2189 2543 1.202325 CGGATCGATGTACCCGAACAA 60.202 52.381 16.05 0.00 44.29 2.83
2190 2544 0.382873 CGGATCGATGTACCCGAACA 59.617 55.000 16.05 0.00 44.29 3.18
2229 2583 2.126618 CGCTCGCCGTACTCACAA 60.127 61.111 0.00 0.00 0.00 3.33
2356 2710 4.354943 CCCAGGTCCCCACCCTCT 62.355 72.222 0.00 0.00 45.12 3.69
2595 4154 8.557869 AACTAAAGCTACGTATCTTTATGACG 57.442 34.615 24.28 17.44 42.22 4.35
2603 4162 7.758528 CCTGTTACAAACTAAAGCTACGTATCT 59.241 37.037 0.00 0.00 0.00 1.98
2619 7745 7.706100 AACAAAAACTAGACCCTGTTACAAA 57.294 32.000 0.00 0.00 0.00 2.83
2627 7753 6.321435 CCTCAAGAAAACAAAAACTAGACCCT 59.679 38.462 0.00 0.00 0.00 4.34
2628 7754 6.461092 CCCTCAAGAAAACAAAAACTAGACCC 60.461 42.308 0.00 0.00 0.00 4.46
2629 7755 6.461092 CCCCTCAAGAAAACAAAAACTAGACC 60.461 42.308 0.00 0.00 0.00 3.85
2630 7756 6.320418 TCCCCTCAAGAAAACAAAAACTAGAC 59.680 38.462 0.00 0.00 0.00 2.59
2631 7757 6.428295 TCCCCTCAAGAAAACAAAAACTAGA 58.572 36.000 0.00 0.00 0.00 2.43
2632 7758 6.709018 TCCCCTCAAGAAAACAAAAACTAG 57.291 37.500 0.00 0.00 0.00 2.57
2633 7759 6.437793 TGTTCCCCTCAAGAAAACAAAAACTA 59.562 34.615 0.00 0.00 0.00 2.24
2634 7760 5.247337 TGTTCCCCTCAAGAAAACAAAAACT 59.753 36.000 0.00 0.00 0.00 2.66
2635 7761 5.483811 TGTTCCCCTCAAGAAAACAAAAAC 58.516 37.500 0.00 0.00 0.00 2.43
2636 7762 5.337975 CCTGTTCCCCTCAAGAAAACAAAAA 60.338 40.000 0.00 0.00 30.16 1.94
2637 7763 4.161377 CCTGTTCCCCTCAAGAAAACAAAA 59.839 41.667 0.00 0.00 30.16 2.44
2638 7764 3.704061 CCTGTTCCCCTCAAGAAAACAAA 59.296 43.478 0.00 0.00 30.16 2.83
2639 7765 3.295973 CCTGTTCCCCTCAAGAAAACAA 58.704 45.455 0.00 0.00 30.16 2.83
2640 7766 2.424234 CCCTGTTCCCCTCAAGAAAACA 60.424 50.000 0.00 0.00 0.00 2.83
2641 7767 2.239400 CCCTGTTCCCCTCAAGAAAAC 58.761 52.381 0.00 0.00 0.00 2.43
2642 7768 1.856920 ACCCTGTTCCCCTCAAGAAAA 59.143 47.619 0.00 0.00 0.00 2.29
2643 7769 1.423921 GACCCTGTTCCCCTCAAGAAA 59.576 52.381 0.00 0.00 0.00 2.52
2644 7770 1.064825 GACCCTGTTCCCCTCAAGAA 58.935 55.000 0.00 0.00 0.00 2.52
2645 7771 0.193574 AGACCCTGTTCCCCTCAAGA 59.806 55.000 0.00 0.00 0.00 3.02
2646 7772 1.834263 CTAGACCCTGTTCCCCTCAAG 59.166 57.143 0.00 0.00 0.00 3.02
2647 7773 1.151413 ACTAGACCCTGTTCCCCTCAA 59.849 52.381 0.00 0.00 0.00 3.02
2648 7774 0.790993 ACTAGACCCTGTTCCCCTCA 59.209 55.000 0.00 0.00 0.00 3.86
2649 7775 1.954035 AACTAGACCCTGTTCCCCTC 58.046 55.000 0.00 0.00 0.00 4.30
2650 7776 3.572661 TTAACTAGACCCTGTTCCCCT 57.427 47.619 0.00 0.00 0.00 4.79
2651 7777 4.202493 TGTTTTAACTAGACCCTGTTCCCC 60.202 45.833 0.00 0.00 0.00 4.81
2652 7778 4.976864 TGTTTTAACTAGACCCTGTTCCC 58.023 43.478 0.00 0.00 0.00 3.97
2653 7779 5.001874 CCTGTTTTAACTAGACCCTGTTCC 58.998 45.833 0.00 0.00 0.00 3.62
2654 7780 4.454847 GCCTGTTTTAACTAGACCCTGTTC 59.545 45.833 0.00 0.00 0.00 3.18
2655 7781 4.395625 GCCTGTTTTAACTAGACCCTGTT 58.604 43.478 0.00 0.00 0.00 3.16
2659 7785 3.079578 GTGGCCTGTTTTAACTAGACCC 58.920 50.000 3.32 0.00 0.00 4.46
2669 7795 1.961277 CGAGCGAGTGGCCTGTTTT 60.961 57.895 3.32 0.00 45.17 2.43
2670 7796 2.357517 CGAGCGAGTGGCCTGTTT 60.358 61.111 3.32 0.00 45.17 2.83
2671 7797 4.379243 CCGAGCGAGTGGCCTGTT 62.379 66.667 3.32 0.00 45.17 3.16
2677 7803 3.883744 AAACAGGCCGAGCGAGTGG 62.884 63.158 0.00 0.00 0.00 4.00
2678 7804 2.357517 AAACAGGCCGAGCGAGTG 60.358 61.111 0.00 0.00 0.00 3.51
2679 7805 2.357517 CAAACAGGCCGAGCGAGT 60.358 61.111 0.00 0.00 0.00 4.18
2680 7806 1.961277 AACAAACAGGCCGAGCGAG 60.961 57.895 0.00 0.00 0.00 5.03
2681 7807 2.110213 AACAAACAGGCCGAGCGA 59.890 55.556 0.00 0.00 0.00 4.93
2682 7808 2.252260 CAACAAACAGGCCGAGCG 59.748 61.111 0.00 0.00 0.00 5.03
2734 7860 7.501892 ACCAATTTTTGCACAACTTGGAAATAT 59.498 29.630 30.43 12.96 44.20 1.28
2736 7862 5.651576 ACCAATTTTTGCACAACTTGGAAAT 59.348 32.000 30.43 13.53 44.20 2.17
2738 7864 4.394300 CACCAATTTTTGCACAACTTGGAA 59.606 37.500 30.43 0.66 37.24 3.53
2739 7865 3.937706 CACCAATTTTTGCACAACTTGGA 59.062 39.130 30.43 0.00 37.24 3.53
2740 7866 3.688673 ACACCAATTTTTGCACAACTTGG 59.311 39.130 25.04 25.04 39.20 3.61
2741 7867 4.492247 CGACACCAATTTTTGCACAACTTG 60.492 41.667 8.31 8.31 0.00 3.16
2742 7868 3.616379 CGACACCAATTTTTGCACAACTT 59.384 39.130 0.00 0.00 0.00 2.66
2743 7869 3.186119 CGACACCAATTTTTGCACAACT 58.814 40.909 0.00 0.00 0.00 3.16
2744 7870 2.926838 ACGACACCAATTTTTGCACAAC 59.073 40.909 0.00 0.00 0.00 3.32
2745 7871 2.926200 CACGACACCAATTTTTGCACAA 59.074 40.909 0.00 0.00 0.00 3.33
2746 7872 2.094494 ACACGACACCAATTTTTGCACA 60.094 40.909 0.00 0.00 0.00 4.57
2747 7873 2.535331 ACACGACACCAATTTTTGCAC 58.465 42.857 0.00 0.00 0.00 4.57
2748 7874 2.949451 ACACGACACCAATTTTTGCA 57.051 40.000 0.00 0.00 0.00 4.08
2749 7875 3.783873 GCAAACACGACACCAATTTTTGC 60.784 43.478 0.00 0.00 40.20 3.68
2750 7876 3.616379 AGCAAACACGACACCAATTTTTG 59.384 39.130 0.00 0.00 0.00 2.44
2751 7877 3.855858 AGCAAACACGACACCAATTTTT 58.144 36.364 0.00 0.00 0.00 1.94
2752 7878 3.518634 AGCAAACACGACACCAATTTT 57.481 38.095 0.00 0.00 0.00 1.82
2753 7879 3.119316 TGAAGCAAACACGACACCAATTT 60.119 39.130 0.00 0.00 0.00 1.82
2754 7880 2.425312 TGAAGCAAACACGACACCAATT 59.575 40.909 0.00 0.00 0.00 2.32
2755 7881 2.020720 TGAAGCAAACACGACACCAAT 58.979 42.857 0.00 0.00 0.00 3.16
2756 7882 1.454201 TGAAGCAAACACGACACCAA 58.546 45.000 0.00 0.00 0.00 3.67
2757 7883 1.333308 CATGAAGCAAACACGACACCA 59.667 47.619 0.00 0.00 0.00 4.17
2758 7884 1.925946 GCATGAAGCAAACACGACACC 60.926 52.381 0.00 0.00 44.79 4.16
2759 7885 1.398595 GCATGAAGCAAACACGACAC 58.601 50.000 0.00 0.00 44.79 3.67
2760 7886 3.843632 GCATGAAGCAAACACGACA 57.156 47.368 0.00 0.00 44.79 4.35
2770 7896 1.171308 TCTCAAAGCAGGCATGAAGC 58.829 50.000 0.62 0.00 44.65 3.86
2771 7897 3.014623 TCATCTCAAAGCAGGCATGAAG 58.985 45.455 0.62 0.00 0.00 3.02
2772 7898 3.014623 CTCATCTCAAAGCAGGCATGAA 58.985 45.455 0.62 0.00 0.00 2.57
2773 7899 2.640184 CTCATCTCAAAGCAGGCATGA 58.360 47.619 0.62 0.00 0.00 3.07
2774 7900 1.676529 CCTCATCTCAAAGCAGGCATG 59.323 52.381 0.00 0.00 0.00 4.06
2775 7901 1.284198 ACCTCATCTCAAAGCAGGCAT 59.716 47.619 0.00 0.00 0.00 4.40
2776 7902 0.694771 ACCTCATCTCAAAGCAGGCA 59.305 50.000 0.00 0.00 0.00 4.75
2777 7903 2.698855 TACCTCATCTCAAAGCAGGC 57.301 50.000 0.00 0.00 0.00 4.85
2778 7904 5.188434 TCAAATACCTCATCTCAAAGCAGG 58.812 41.667 0.00 0.00 0.00 4.85
2779 7905 5.220815 GCTCAAATACCTCATCTCAAAGCAG 60.221 44.000 0.00 0.00 0.00 4.24
2780 7906 4.637534 GCTCAAATACCTCATCTCAAAGCA 59.362 41.667 0.00 0.00 0.00 3.91
2781 7907 4.637534 TGCTCAAATACCTCATCTCAAAGC 59.362 41.667 0.00 0.00 0.00 3.51
2782 7908 6.766944 AGATGCTCAAATACCTCATCTCAAAG 59.233 38.462 0.00 0.00 39.50 2.77
2783 7909 6.656902 AGATGCTCAAATACCTCATCTCAAA 58.343 36.000 0.00 0.00 39.50 2.69
2784 7910 6.244552 AGATGCTCAAATACCTCATCTCAA 57.755 37.500 0.00 0.00 39.50 3.02
2785 7911 5.883685 AGATGCTCAAATACCTCATCTCA 57.116 39.130 0.00 0.00 39.50 3.27
2786 7912 6.523840 AGAAGATGCTCAAATACCTCATCTC 58.476 40.000 3.87 0.00 41.90 2.75
2787 7913 6.497624 AGAAGATGCTCAAATACCTCATCT 57.502 37.500 0.00 0.00 43.85 2.90
2873 7999 9.590451 CAGCTTGTGGATTTTATGAAACATTAT 57.410 29.630 0.00 0.00 0.00 1.28
2874 8000 8.584157 ACAGCTTGTGGATTTTATGAAACATTA 58.416 29.630 0.00 0.00 0.00 1.90
2875 8001 7.444299 ACAGCTTGTGGATTTTATGAAACATT 58.556 30.769 0.00 0.00 0.00 2.71
2876 8002 6.996509 ACAGCTTGTGGATTTTATGAAACAT 58.003 32.000 0.00 0.00 0.00 2.71
2877 8003 6.403866 ACAGCTTGTGGATTTTATGAAACA 57.596 33.333 0.00 0.00 0.00 2.83
2878 8004 8.810652 TTTACAGCTTGTGGATTTTATGAAAC 57.189 30.769 0.00 0.00 0.00 2.78
2879 8005 9.255304 GTTTTACAGCTTGTGGATTTTATGAAA 57.745 29.630 0.00 0.00 0.00 2.69
2880 8006 8.637986 AGTTTTACAGCTTGTGGATTTTATGAA 58.362 29.630 0.00 0.00 0.00 2.57
2881 8007 8.177119 AGTTTTACAGCTTGTGGATTTTATGA 57.823 30.769 0.00 0.00 0.00 2.15
2882 8008 9.341899 GTAGTTTTACAGCTTGTGGATTTTATG 57.658 33.333 0.00 0.00 0.00 1.90
2883 8009 9.073475 TGTAGTTTTACAGCTTGTGGATTTTAT 57.927 29.630 0.00 0.00 34.91 1.40
2884 8010 8.453238 TGTAGTTTTACAGCTTGTGGATTTTA 57.547 30.769 0.00 0.00 34.91 1.52
2885 8011 7.341445 TGTAGTTTTACAGCTTGTGGATTTT 57.659 32.000 0.00 0.00 34.91 1.82
2886 8012 6.952773 TGTAGTTTTACAGCTTGTGGATTT 57.047 33.333 0.00 0.00 34.91 2.17
2887 8013 6.952773 TTGTAGTTTTACAGCTTGTGGATT 57.047 33.333 0.00 0.00 40.68 3.01
2888 8014 6.320164 TGTTTGTAGTTTTACAGCTTGTGGAT 59.680 34.615 0.00 0.00 40.68 3.41
2889 8015 5.648526 TGTTTGTAGTTTTACAGCTTGTGGA 59.351 36.000 0.00 0.00 40.68 4.02
2890 8016 5.885881 TGTTTGTAGTTTTACAGCTTGTGG 58.114 37.500 0.00 0.00 40.68 4.17
2891 8017 7.985634 ATTGTTTGTAGTTTTACAGCTTGTG 57.014 32.000 0.00 0.00 40.68 3.33
2892 8018 8.466798 AGAATTGTTTGTAGTTTTACAGCTTGT 58.533 29.630 0.00 0.00 40.68 3.16
2893 8019 8.856490 AGAATTGTTTGTAGTTTTACAGCTTG 57.144 30.769 0.00 0.00 40.68 4.01
2894 8020 9.869757 AAAGAATTGTTTGTAGTTTTACAGCTT 57.130 25.926 0.00 0.00 40.68 3.74
2895 8021 9.869757 AAAAGAATTGTTTGTAGTTTTACAGCT 57.130 25.926 0.71 0.00 40.68 4.24
3005 8131 9.405587 CGGACATTTCACACAAGTTTTAATTAT 57.594 29.630 0.00 0.00 0.00 1.28
3006 8132 8.407064 ACGGACATTTCACACAAGTTTTAATTA 58.593 29.630 0.00 0.00 0.00 1.40
3007 8133 7.221838 CACGGACATTTCACACAAGTTTTAATT 59.778 33.333 0.00 0.00 0.00 1.40
3008 8134 6.695278 CACGGACATTTCACACAAGTTTTAAT 59.305 34.615 0.00 0.00 0.00 1.40
3009 8135 6.030849 CACGGACATTTCACACAAGTTTTAA 58.969 36.000 0.00 0.00 0.00 1.52
3010 8136 5.449314 CCACGGACATTTCACACAAGTTTTA 60.449 40.000 0.00 0.00 0.00 1.52
3011 8137 4.420168 CACGGACATTTCACACAAGTTTT 58.580 39.130 0.00 0.00 0.00 2.43
3012 8138 3.181491 CCACGGACATTTCACACAAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
3013 8139 2.357637 CCACGGACATTTCACACAAGTT 59.642 45.455 0.00 0.00 0.00 2.66
3014 8140 1.946768 CCACGGACATTTCACACAAGT 59.053 47.619 0.00 0.00 0.00 3.16
3015 8141 2.217750 TCCACGGACATTTCACACAAG 58.782 47.619 0.00 0.00 0.00 3.16
3016 8142 2.333688 TCCACGGACATTTCACACAA 57.666 45.000 0.00 0.00 0.00 3.33
3017 8143 1.944024 GTTCCACGGACATTTCACACA 59.056 47.619 0.00 0.00 0.00 3.72
3018 8144 1.265905 GGTTCCACGGACATTTCACAC 59.734 52.381 0.00 0.00 0.00 3.82
3019 8145 1.142060 AGGTTCCACGGACATTTCACA 59.858 47.619 0.00 0.00 0.00 3.58
3020 8146 1.892209 AGGTTCCACGGACATTTCAC 58.108 50.000 0.00 0.00 0.00 3.18
3021 8147 2.649531 AAGGTTCCACGGACATTTCA 57.350 45.000 0.00 0.00 0.00 2.69
3022 8148 4.316205 AAAAAGGTTCCACGGACATTTC 57.684 40.909 0.00 0.00 0.00 2.17
3023 8149 5.855740 TTAAAAAGGTTCCACGGACATTT 57.144 34.783 0.00 0.00 0.00 2.32
3024 8150 5.855740 TTTAAAAAGGTTCCACGGACATT 57.144 34.783 0.00 0.00 0.00 2.71
3025 8151 5.855740 TTTTAAAAAGGTTCCACGGACAT 57.144 34.783 0.00 0.00 0.00 3.06
3026 8152 5.855740 ATTTTAAAAAGGTTCCACGGACA 57.144 34.783 4.44 0.00 0.00 4.02
3027 8153 6.274579 TCAATTTTAAAAAGGTTCCACGGAC 58.725 36.000 4.44 0.00 0.00 4.79
3028 8154 6.466885 TCAATTTTAAAAAGGTTCCACGGA 57.533 33.333 4.44 0.00 0.00 4.69
3029 8155 7.439655 TCAATCAATTTTAAAAAGGTTCCACGG 59.560 33.333 4.44 0.00 0.00 4.94
3030 8156 8.359060 TCAATCAATTTTAAAAAGGTTCCACG 57.641 30.769 4.44 0.00 0.00 4.94
3143 8269 8.734386 TGCAACTTTTATTTTGGTGAATTGTTT 58.266 25.926 0.00 0.00 0.00 2.83
3144 8270 8.273780 TGCAACTTTTATTTTGGTGAATTGTT 57.726 26.923 0.00 0.00 0.00 2.83
3145 8271 7.856145 TGCAACTTTTATTTTGGTGAATTGT 57.144 28.000 0.00 0.00 0.00 2.71
3251 8377 9.588096 TCACTCATGGGCTATTCGTATATATAT 57.412 33.333 0.00 0.00 0.00 0.86
3252 8378 8.847196 GTCACTCATGGGCTATTCGTATATATA 58.153 37.037 0.00 0.00 0.00 0.86
3253 8379 7.201920 GGTCACTCATGGGCTATTCGTATATAT 60.202 40.741 0.00 0.00 0.00 0.86
3254 8380 6.096423 GGTCACTCATGGGCTATTCGTATATA 59.904 42.308 0.00 0.00 0.00 0.86
3255 8381 5.105310 GGTCACTCATGGGCTATTCGTATAT 60.105 44.000 0.00 0.00 0.00 0.86
3256 8382 4.219944 GGTCACTCATGGGCTATTCGTATA 59.780 45.833 0.00 0.00 0.00 1.47
3257 8383 3.006967 GGTCACTCATGGGCTATTCGTAT 59.993 47.826 0.00 0.00 0.00 3.06
3258 8384 2.364324 GGTCACTCATGGGCTATTCGTA 59.636 50.000 0.00 0.00 0.00 3.43
3259 8385 1.139058 GGTCACTCATGGGCTATTCGT 59.861 52.381 0.00 0.00 0.00 3.85
3260 8386 1.138859 TGGTCACTCATGGGCTATTCG 59.861 52.381 0.00 0.00 0.00 3.34
3261 8387 2.092968 TGTGGTCACTCATGGGCTATTC 60.093 50.000 0.00 0.00 0.00 1.75
3262 8388 1.915489 TGTGGTCACTCATGGGCTATT 59.085 47.619 0.00 0.00 0.00 1.73
3263 8389 1.210478 GTGTGGTCACTCATGGGCTAT 59.790 52.381 0.00 0.00 40.98 2.97
3264 8390 0.613260 GTGTGGTCACTCATGGGCTA 59.387 55.000 0.00 0.00 40.98 3.93
3265 8391 1.376466 GTGTGGTCACTCATGGGCT 59.624 57.895 0.00 0.00 40.98 5.19
3266 8392 2.034879 CGTGTGGTCACTCATGGGC 61.035 63.158 0.00 0.00 41.89 5.36
3267 8393 0.034756 TTCGTGTGGTCACTCATGGG 59.965 55.000 0.00 0.00 41.89 4.00
3268 8394 2.099141 ATTCGTGTGGTCACTCATGG 57.901 50.000 2.66 0.00 41.89 3.66
3269 8395 4.488126 AAAATTCGTGTGGTCACTCATG 57.512 40.909 2.66 0.00 41.89 3.07
3270 8396 6.402118 CGATTAAAATTCGTGTGGTCACTCAT 60.402 38.462 2.66 0.00 41.89 2.90
3271 8397 5.107259 CGATTAAAATTCGTGTGGTCACTCA 60.107 40.000 2.66 0.00 41.89 3.41
3272 8398 5.119588 TCGATTAAAATTCGTGTGGTCACTC 59.880 40.000 2.66 0.00 41.89 3.51
3273 8399 4.992319 TCGATTAAAATTCGTGTGGTCACT 59.008 37.500 2.66 0.00 41.89 3.41
3274 8400 5.272167 TCGATTAAAATTCGTGTGGTCAC 57.728 39.130 0.00 0.00 40.79 3.67
3275 8401 6.402766 GGAATCGATTAAAATTCGTGTGGTCA 60.403 38.462 11.38 0.00 33.57 4.02
3276 8402 5.963586 GGAATCGATTAAAATTCGTGTGGTC 59.036 40.000 11.38 0.00 33.57 4.02
3277 8403 5.646360 AGGAATCGATTAAAATTCGTGTGGT 59.354 36.000 11.38 0.00 33.57 4.16
3278 8404 6.119144 AGGAATCGATTAAAATTCGTGTGG 57.881 37.500 11.38 0.00 33.57 4.17
3357 8483 9.979578 TCACAAAATGCATTGAAGTAGTTAAAT 57.020 25.926 13.82 0.00 34.38 1.40
3358 8484 9.243637 GTCACAAAATGCATTGAAGTAGTTAAA 57.756 29.630 13.82 0.00 34.38 1.52
3359 8485 8.409371 TGTCACAAAATGCATTGAAGTAGTTAA 58.591 29.630 13.82 0.00 34.38 2.01
3360 8486 7.935520 TGTCACAAAATGCATTGAAGTAGTTA 58.064 30.769 13.82 0.00 34.38 2.24
3361 8487 6.804677 TGTCACAAAATGCATTGAAGTAGTT 58.195 32.000 13.82 0.00 34.38 2.24
3362 8488 6.039717 ACTGTCACAAAATGCATTGAAGTAGT 59.960 34.615 13.82 9.36 34.38 2.73
3363 8489 6.441274 ACTGTCACAAAATGCATTGAAGTAG 58.559 36.000 13.82 8.79 34.38 2.57
3364 8490 6.389830 ACTGTCACAAAATGCATTGAAGTA 57.610 33.333 13.82 0.00 34.38 2.24
3365 8491 5.266733 ACTGTCACAAAATGCATTGAAGT 57.733 34.783 13.82 9.15 34.38 3.01
3366 8492 6.592798 AAACTGTCACAAAATGCATTGAAG 57.407 33.333 13.82 8.49 34.38 3.02
3367 8493 6.981762 AAAACTGTCACAAAATGCATTGAA 57.018 29.167 13.82 0.00 34.38 2.69
3368 8494 6.981762 AAAAACTGTCACAAAATGCATTGA 57.018 29.167 13.82 3.40 34.38 2.57
3414 8540 9.589461 AGGAGTCCTCGATCTTTTAATAGAATA 57.411 33.333 5.62 0.00 0.00 1.75
3415 8541 8.485578 AGGAGTCCTCGATCTTTTAATAGAAT 57.514 34.615 5.62 0.00 0.00 2.40
3416 8542 7.899648 AGGAGTCCTCGATCTTTTAATAGAA 57.100 36.000 5.62 0.00 0.00 2.10
3417 8543 7.899648 AAGGAGTCCTCGATCTTTTAATAGA 57.100 36.000 13.43 0.00 30.89 1.98
3418 8544 8.198109 TCAAAGGAGTCCTCGATCTTTTAATAG 58.802 37.037 13.43 0.00 30.89 1.73
3419 8545 8.074613 TCAAAGGAGTCCTCGATCTTTTAATA 57.925 34.615 13.43 0.00 30.89 0.98
3420 8546 6.947464 TCAAAGGAGTCCTCGATCTTTTAAT 58.053 36.000 13.43 0.00 30.89 1.40
3421 8547 6.354794 TCAAAGGAGTCCTCGATCTTTTAA 57.645 37.500 13.43 0.00 30.89 1.52
3422 8548 5.995565 TCAAAGGAGTCCTCGATCTTTTA 57.004 39.130 13.43 0.00 30.89 1.52
3423 8549 4.891992 TCAAAGGAGTCCTCGATCTTTT 57.108 40.909 13.43 0.00 30.89 2.27
3424 8550 5.046304 TGAATCAAAGGAGTCCTCGATCTTT 60.046 40.000 13.43 4.07 37.33 2.52
3425 8551 4.467795 TGAATCAAAGGAGTCCTCGATCTT 59.532 41.667 13.43 4.77 37.33 2.40
3426 8552 4.026744 TGAATCAAAGGAGTCCTCGATCT 58.973 43.478 13.43 8.59 37.33 2.75
3427 8553 4.392921 TGAATCAAAGGAGTCCTCGATC 57.607 45.455 13.43 11.55 37.33 3.69
3428 8554 4.826274 TTGAATCAAAGGAGTCCTCGAT 57.174 40.909 13.43 14.60 37.33 3.59
3429 8555 4.569943 CTTTGAATCAAAGGAGTCCTCGA 58.430 43.478 23.96 12.83 44.75 4.04
3430 8556 4.935885 CTTTGAATCAAAGGAGTCCTCG 57.064 45.455 23.96 7.21 44.75 4.63
3440 8566 9.835389 AAATCAAGTGAATTCCTTTGAATCAAA 57.165 25.926 19.41 8.25 40.34 2.69
3441 8567 9.480053 GAAATCAAGTGAATTCCTTTGAATCAA 57.520 29.630 19.41 0.00 40.34 2.57
3442 8568 7.809331 CGAAATCAAGTGAATTCCTTTGAATCA 59.191 33.333 19.41 4.21 40.34 2.57
3443 8569 7.809806 ACGAAATCAAGTGAATTCCTTTGAATC 59.190 33.333 19.41 18.20 40.34 2.52
3444 8570 7.661040 ACGAAATCAAGTGAATTCCTTTGAAT 58.339 30.769 19.41 12.25 43.08 2.57
3445 8571 7.038154 ACGAAATCAAGTGAATTCCTTTGAA 57.962 32.000 19.41 8.62 33.71 2.69
3446 8572 6.633500 ACGAAATCAAGTGAATTCCTTTGA 57.367 33.333 18.40 18.40 31.91 2.69
3447 8573 6.144402 CCAACGAAATCAAGTGAATTCCTTTG 59.856 38.462 2.27 7.72 31.91 2.77
3448 8574 6.215845 CCAACGAAATCAAGTGAATTCCTTT 58.784 36.000 2.27 0.00 31.91 3.11
3449 8575 5.278957 CCCAACGAAATCAAGTGAATTCCTT 60.279 40.000 2.27 3.32 31.91 3.36
3450 8576 4.218417 CCCAACGAAATCAAGTGAATTCCT 59.782 41.667 2.27 0.00 31.91 3.36
3451 8577 4.485163 CCCAACGAAATCAAGTGAATTCC 58.515 43.478 2.27 0.00 31.91 3.01
3452 8578 4.485163 CCCCAACGAAATCAAGTGAATTC 58.515 43.478 0.00 0.00 32.18 2.17
3453 8579 3.258123 CCCCCAACGAAATCAAGTGAATT 59.742 43.478 0.00 0.00 0.00 2.17
3454 8580 2.825532 CCCCCAACGAAATCAAGTGAAT 59.174 45.455 0.00 0.00 0.00 2.57
3455 8581 2.158593 TCCCCCAACGAAATCAAGTGAA 60.159 45.455 0.00 0.00 0.00 3.18
3456 8582 1.422024 TCCCCCAACGAAATCAAGTGA 59.578 47.619 0.00 0.00 0.00 3.41
3457 8583 1.904287 TCCCCCAACGAAATCAAGTG 58.096 50.000 0.00 0.00 0.00 3.16
3458 8584 2.668144 TTCCCCCAACGAAATCAAGT 57.332 45.000 0.00 0.00 0.00 3.16
3459 8585 4.535526 AAATTCCCCCAACGAAATCAAG 57.464 40.909 0.00 0.00 0.00 3.02
3460 8586 4.965200 AAAATTCCCCCAACGAAATCAA 57.035 36.364 0.00 0.00 0.00 2.57
3461 8587 4.965200 AAAAATTCCCCCAACGAAATCA 57.035 36.364 0.00 0.00 0.00 2.57
3480 8606 5.738909 TCCTCCAACAATTTTGCTCAAAAA 58.261 33.333 11.23 0.00 42.71 1.94
3481 8607 5.350504 TCCTCCAACAATTTTGCTCAAAA 57.649 34.783 9.83 9.83 43.48 2.44
3482 8608 5.549742 ATCCTCCAACAATTTTGCTCAAA 57.450 34.783 0.00 0.00 0.00 2.69
3483 8609 5.549742 AATCCTCCAACAATTTTGCTCAA 57.450 34.783 0.00 0.00 0.00 3.02
3484 8610 5.070180 TCAAATCCTCCAACAATTTTGCTCA 59.930 36.000 0.00 0.00 0.00 4.26
3485 8611 5.540911 TCAAATCCTCCAACAATTTTGCTC 58.459 37.500 0.00 0.00 0.00 4.26
3486 8612 5.549742 TCAAATCCTCCAACAATTTTGCT 57.450 34.783 0.00 0.00 0.00 3.91
3487 8613 6.652062 AGATTCAAATCCTCCAACAATTTTGC 59.348 34.615 0.00 0.00 36.04 3.68
3488 8614 8.611654 AAGATTCAAATCCTCCAACAATTTTG 57.388 30.769 0.00 0.00 36.04 2.44
3490 8616 9.710900 GTAAAGATTCAAATCCTCCAACAATTT 57.289 29.630 0.00 0.00 36.04 1.82
3491 8617 8.028938 CGTAAAGATTCAAATCCTCCAACAATT 58.971 33.333 0.00 0.00 36.04 2.32
3492 8618 7.393234 TCGTAAAGATTCAAATCCTCCAACAAT 59.607 33.333 0.00 0.00 36.04 2.71
3493 8619 6.712998 TCGTAAAGATTCAAATCCTCCAACAA 59.287 34.615 0.00 0.00 36.04 2.83
3494 8620 6.234920 TCGTAAAGATTCAAATCCTCCAACA 58.765 36.000 0.00 0.00 36.04 3.33
3495 8621 6.737254 TCGTAAAGATTCAAATCCTCCAAC 57.263 37.500 0.00 0.00 36.04 3.77
3496 8622 7.829211 AGATTCGTAAAGATTCAAATCCTCCAA 59.171 33.333 0.00 0.00 36.04 3.53
3497 8623 7.338710 AGATTCGTAAAGATTCAAATCCTCCA 58.661 34.615 0.00 0.00 36.04 3.86
3498 8624 7.793927 AGATTCGTAAAGATTCAAATCCTCC 57.206 36.000 0.00 0.00 36.04 4.30
3499 8625 9.709600 GAAAGATTCGTAAAGATTCAAATCCTC 57.290 33.333 0.00 0.00 36.04 3.71
3500 8626 8.678199 GGAAAGATTCGTAAAGATTCAAATCCT 58.322 33.333 0.00 0.00 36.04 3.24
3501 8627 8.678199 AGGAAAGATTCGTAAAGATTCAAATCC 58.322 33.333 0.00 0.00 36.04 3.01
3502 8628 9.495754 CAGGAAAGATTCGTAAAGATTCAAATC 57.504 33.333 0.00 0.00 33.04 2.17
3503 8629 7.970614 GCAGGAAAGATTCGTAAAGATTCAAAT 59.029 33.333 0.00 0.00 33.04 2.32
3504 8630 7.040755 TGCAGGAAAGATTCGTAAAGATTCAAA 60.041 33.333 0.00 0.00 33.04 2.69
3505 8631 6.429692 TGCAGGAAAGATTCGTAAAGATTCAA 59.570 34.615 0.00 0.00 33.04 2.69
3506 8632 5.937540 TGCAGGAAAGATTCGTAAAGATTCA 59.062 36.000 0.00 0.00 33.04 2.57
3507 8633 6.422776 TGCAGGAAAGATTCGTAAAGATTC 57.577 37.500 0.00 0.00 0.00 2.52
3508 8634 6.817765 TTGCAGGAAAGATTCGTAAAGATT 57.182 33.333 0.00 0.00 0.00 2.40
3509 8635 6.183360 CCATTGCAGGAAAGATTCGTAAAGAT 60.183 38.462 0.00 0.00 0.00 2.40
3510 8636 5.123820 CCATTGCAGGAAAGATTCGTAAAGA 59.876 40.000 0.00 0.00 0.00 2.52
3511 8637 5.106157 ACCATTGCAGGAAAGATTCGTAAAG 60.106 40.000 0.00 0.00 0.00 1.85
3512 8638 4.764823 ACCATTGCAGGAAAGATTCGTAAA 59.235 37.500 0.00 0.00 0.00 2.01
3513 8639 4.331968 ACCATTGCAGGAAAGATTCGTAA 58.668 39.130 0.00 0.00 0.00 3.18
3514 8640 3.938963 GACCATTGCAGGAAAGATTCGTA 59.061 43.478 0.00 0.00 0.00 3.43
3515 8641 2.749621 GACCATTGCAGGAAAGATTCGT 59.250 45.455 0.00 0.00 0.00 3.85
3516 8642 2.749076 TGACCATTGCAGGAAAGATTCG 59.251 45.455 0.00 0.00 0.00 3.34
3517 8643 3.760684 AGTGACCATTGCAGGAAAGATTC 59.239 43.478 0.00 0.00 0.00 2.52
3518 8644 3.771216 AGTGACCATTGCAGGAAAGATT 58.229 40.909 0.00 0.00 0.00 2.40
3519 8645 3.446442 AGTGACCATTGCAGGAAAGAT 57.554 42.857 0.00 0.00 0.00 2.40
3520 8646 2.886523 CAAGTGACCATTGCAGGAAAGA 59.113 45.455 0.00 0.00 0.00 2.52
3521 8647 2.886523 TCAAGTGACCATTGCAGGAAAG 59.113 45.455 0.00 0.00 0.00 2.62
3522 8648 2.942804 TCAAGTGACCATTGCAGGAAA 58.057 42.857 0.00 0.00 0.00 3.13
3523 8649 2.655090 TCAAGTGACCATTGCAGGAA 57.345 45.000 0.00 0.00 0.00 3.36
3524 8650 2.885135 ATCAAGTGACCATTGCAGGA 57.115 45.000 0.00 0.00 0.00 3.86
3525 8651 3.087031 AGAATCAAGTGACCATTGCAGG 58.913 45.455 0.00 0.00 0.00 4.85
3526 8652 4.482386 CAAGAATCAAGTGACCATTGCAG 58.518 43.478 0.00 0.00 0.00 4.41
3527 8653 3.256383 CCAAGAATCAAGTGACCATTGCA 59.744 43.478 0.00 0.00 0.00 4.08
3528 8654 3.367703 CCCAAGAATCAAGTGACCATTGC 60.368 47.826 0.00 0.00 0.00 3.56
3529 8655 4.081406 TCCCAAGAATCAAGTGACCATTG 58.919 43.478 0.00 0.00 0.00 2.82
3530 8656 4.387026 TCCCAAGAATCAAGTGACCATT 57.613 40.909 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.