Multiple sequence alignment - TraesCS2A01G508000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G508000 chr2A 100.000 4002 0 0 1 4002 734797975 734801976 0.000000e+00 7391.0
1 TraesCS2A01G508000 chr2A 97.478 793 19 1 1791 2582 734737699 734738491 0.000000e+00 1352.0
2 TraesCS2A01G508000 chr2A 95.244 820 28 2 1 812 734775682 734776498 0.000000e+00 1288.0
3 TraesCS2A01G508000 chr2A 92.000 825 49 11 1 812 135453269 135454089 0.000000e+00 1142.0
4 TraesCS2A01G508000 chr2A 95.082 244 11 1 2610 2852 729186494 729186737 2.260000e-102 383.0
5 TraesCS2A01G508000 chr2A 96.875 128 4 0 1395 1522 729185458 729185585 8.710000e-52 215.0
6 TraesCS2A01G508000 chr2A 98.214 112 2 0 1678 1789 729186366 729186477 3.160000e-46 196.0
7 TraesCS2A01G508000 chr2A 97.183 71 2 0 1530 1600 729185979 729186049 1.950000e-23 121.0
8 TraesCS2A01G508000 chr2A 92.727 55 4 0 3367 3421 659705339 659705285 3.320000e-11 80.5
9 TraesCS2A01G508000 chr4A 95.577 814 32 1 3 812 196296594 196295781 0.000000e+00 1301.0
10 TraesCS2A01G508000 chr4A 91.636 825 51 10 1 812 444822870 444823689 0.000000e+00 1125.0
11 TraesCS2A01G508000 chr4A 88.514 296 26 8 1790 2080 596132558 596132266 6.360000e-93 351.0
12 TraesCS2A01G508000 chr1A 95.377 822 28 3 1 812 148641072 148641893 0.000000e+00 1299.0
13 TraesCS2A01G508000 chr1A 91.315 829 57 7 1 814 577725472 577724644 0.000000e+00 1118.0
14 TraesCS2A01G508000 chr2B 86.538 1196 87 36 2854 4002 731711522 731712690 0.000000e+00 1249.0
15 TraesCS2A01G508000 chr2B 92.918 466 33 0 813 1278 731711060 731711525 0.000000e+00 678.0
16 TraesCS2A01G508000 chr2B 95.690 116 5 0 1282 1397 747817801 747817686 1.900000e-43 187.0
17 TraesCS2A01G508000 chr5A 94.268 820 39 1 1 812 448726843 448726024 0.000000e+00 1247.0
18 TraesCS2A01G508000 chr5A 90.146 822 69 4 2 812 18192280 18191460 0.000000e+00 1059.0
19 TraesCS2A01G508000 chr5A 89.574 470 47 2 813 1281 37401808 37401340 2.660000e-166 595.0
20 TraesCS2A01G508000 chr5A 88.913 469 52 0 813 1281 36942512 36942044 2.680000e-161 579.0
21 TraesCS2A01G508000 chr5A 88.186 474 53 3 809 1281 37193917 37193446 2.700000e-156 562.0
22 TraesCS2A01G508000 chr5A 82.583 511 60 10 2852 3347 37401348 37400852 1.330000e-114 424.0
23 TraesCS2A01G508000 chr5A 79.444 647 78 24 3405 4002 37400750 37400110 1.340000e-109 407.0
24 TraesCS2A01G508000 chr5A 80.273 512 62 25 2856 3357 36825892 36825410 2.290000e-92 350.0
25 TraesCS2A01G508000 chr5A 82.100 419 55 14 2852 3255 37193454 37193041 1.380000e-89 340.0
26 TraesCS2A01G508000 chr7A 91.484 822 38 10 1 812 243692820 243692021 0.000000e+00 1101.0
27 TraesCS2A01G508000 chr7A 88.499 826 74 12 1 812 257943429 257942611 0.000000e+00 979.0
28 TraesCS2A01G508000 chr7A 93.673 569 14 3 1999 2567 709291208 709290662 0.000000e+00 832.0
29 TraesCS2A01G508000 chr7A 86.792 53 7 0 3368 3420 157173049 157173101 4.320000e-05 60.2
30 TraesCS2A01G508000 chr6A 90.511 822 67 3 1 812 34952535 34953355 0.000000e+00 1075.0
31 TraesCS2A01G508000 chr6A 88.136 295 27 8 1791 2080 273927060 273927351 1.060000e-90 344.0
32 TraesCS2A01G508000 chr2D 89.066 814 51 19 2852 3645 601427823 601428618 0.000000e+00 976.0
33 TraesCS2A01G508000 chr2D 92.489 466 35 0 813 1278 601427363 601427828 0.000000e+00 667.0
34 TraesCS2A01G508000 chr2D 89.655 290 28 2 1790 2078 62384351 62384063 6.320000e-98 368.0
35 TraesCS2A01G508000 chr2D 87.285 291 31 6 1790 2077 548264535 548264822 1.070000e-85 327.0
36 TraesCS2A01G508000 chr2D 81.443 388 31 19 3643 4002 601428750 601429124 3.050000e-71 279.0
37 TraesCS2A01G508000 chr2D 86.752 234 28 3 2620 2852 633229025 633228794 1.430000e-64 257.0
38 TraesCS2A01G508000 chr2D 94.828 116 6 0 1282 1397 572033368 572033253 8.840000e-42 182.0
39 TraesCS2A01G508000 chr2D 93.388 121 7 1 1278 1397 572032217 572032337 1.140000e-40 178.0
40 TraesCS2A01G508000 chr4B 96.035 454 18 0 1793 2246 637350108 637350561 0.000000e+00 739.0
41 TraesCS2A01G508000 chr4B 91.667 276 23 0 2306 2581 637350999 637351274 2.260000e-102 383.0
42 TraesCS2A01G508000 chr4B 95.312 64 3 0 2250 2313 637350976 637351039 7.080000e-18 102.0
43 TraesCS2A01G508000 chr5D 89.201 463 49 1 813 1275 45898287 45898748 9.640000e-161 577.0
44 TraesCS2A01G508000 chr5D 86.000 450 43 8 2852 3286 46274851 46274407 7.830000e-127 464.0
45 TraesCS2A01G508000 chr5D 95.971 273 11 0 2579 2851 530409062 530409334 1.020000e-120 444.0
46 TraesCS2A01G508000 chr5D 95.185 270 13 0 2582 2851 406476028 406475759 1.030000e-115 427.0
47 TraesCS2A01G508000 chr5D 82.027 523 65 19 2852 3359 46085334 46084826 6.190000e-113 418.0
48 TraesCS2A01G508000 chr5D 79.857 561 60 26 3490 4002 46264074 46263519 1.060000e-95 361.0
49 TraesCS2A01G508000 chr5D 94.186 172 10 0 1619 1790 406476191 406476020 3.070000e-66 263.0
50 TraesCS2A01G508000 chr5D 95.625 160 7 0 1631 1790 530408914 530409073 1.430000e-64 257.0
51 TraesCS2A01G508000 chr5D 84.766 256 35 4 2600 2854 443905668 443905920 1.850000e-63 254.0
52 TraesCS2A01G508000 chr5D 94.531 128 7 0 1395 1522 530408348 530408475 8.770000e-47 198.0
53 TraesCS2A01G508000 chr5D 93.750 128 8 0 1395 1522 406476757 406476630 4.080000e-45 193.0
54 TraesCS2A01G508000 chr5D 95.690 116 5 0 1282 1397 530408193 530408308 1.900000e-43 187.0
55 TraesCS2A01G508000 chr5D 94.828 116 6 0 1282 1397 406476912 406476797 8.840000e-42 182.0
56 TraesCS2A01G508000 chr5D 94.286 70 2 2 1530 1597 530408869 530408938 5.470000e-19 106.0
57 TraesCS2A01G508000 chr5B 88.723 470 52 1 813 1281 46746812 46746343 1.250000e-159 573.0
58 TraesCS2A01G508000 chr5B 88.699 469 53 0 813 1281 46767958 46767490 1.250000e-159 573.0
59 TraesCS2A01G508000 chr5B 88.889 468 48 4 813 1278 48146837 48147302 1.250000e-159 573.0
60 TraesCS2A01G508000 chr5B 82.192 511 62 10 2852 3347 48147297 48147793 2.880000e-111 412.0
61 TraesCS2A01G508000 chr5B 79.193 644 76 27 3405 3997 48147896 48148532 1.040000e-105 394.0
62 TraesCS2A01G508000 chr5B 89.701 301 23 4 1779 2078 475687613 475687320 1.050000e-100 377.0
63 TraesCS2A01G508000 chr5B 79.920 503 66 20 2853 3347 47127166 47126691 1.780000e-88 337.0
64 TraesCS2A01G508000 chr5B 84.706 255 33 5 2600 2852 52310233 52310483 2.390000e-62 250.0
65 TraesCS2A01G508000 chr5B 80.294 340 40 12 3689 4002 47126342 47126004 8.650000e-57 231.0
66 TraesCS2A01G508000 chr5B 80.309 259 38 9 3467 3717 47126597 47126344 2.460000e-42 183.0
67 TraesCS2A01G508000 chr3D 95.620 274 12 0 2579 2852 92363337 92363610 1.320000e-119 440.0
68 TraesCS2A01G508000 chr3D 97.902 143 2 1 1648 1790 92363207 92363348 3.090000e-61 246.0
69 TraesCS2A01G508000 chr3D 95.200 125 6 0 1395 1519 92362415 92362539 8.770000e-47 198.0
70 TraesCS2A01G508000 chr3D 96.522 115 4 0 1283 1397 92362261 92362375 1.470000e-44 191.0
71 TraesCS2A01G508000 chr7D 94.891 274 12 2 2579 2851 140294000 140294272 1.030000e-115 427.0
72 TraesCS2A01G508000 chr7D 97.647 170 2 2 1623 1790 140293842 140294011 1.410000e-74 291.0
73 TraesCS2A01G508000 chr7D 96.094 128 5 0 1395 1522 140293279 140293406 4.050000e-50 209.0
74 TraesCS2A01G508000 chr7D 94.400 125 6 1 1280 1404 318844324 318844201 1.470000e-44 191.0
75 TraesCS2A01G508000 chr7D 95.726 117 4 1 1282 1397 140293123 140293239 1.900000e-43 187.0
76 TraesCS2A01G508000 chr7D 96.429 56 2 0 3367 3422 154179924 154179869 4.260000e-15 93.5
77 TraesCS2A01G508000 chr7D 86.792 53 7 0 3368 3420 155311431 155311483 4.320000e-05 60.2
78 TraesCS2A01G508000 chr1D 93.431 274 18 0 2579 2852 46386610 46386883 1.340000e-109 407.0
79 TraesCS2A01G508000 chr1D 84.765 361 42 7 2224 2575 434266809 434267165 2.290000e-92 350.0
80 TraesCS2A01G508000 chr1D 95.028 181 7 1 1610 1790 46386443 46386621 2.350000e-72 283.0
81 TraesCS2A01G508000 chr1D 95.349 129 6 0 1395 1523 46385877 46386005 5.240000e-49 206.0
82 TraesCS2A01G508000 chr1D 89.524 105 6 5 1530 1634 46386397 46386496 1.170000e-25 128.0
83 TraesCS2A01G508000 chr3A 87.755 294 29 7 1791 2080 740333857 740334147 1.780000e-88 337.0
84 TraesCS2A01G508000 chr1B 87.500 296 28 8 1787 2077 190770876 190771167 2.300000e-87 333.0
85 TraesCS2A01G508000 chr4D 95.690 116 5 0 1282 1397 504891646 504891531 1.900000e-43 187.0
86 TraesCS2A01G508000 chr3B 91.150 113 7 3 1679 1789 8037795 8037684 2.490000e-32 150.0
87 TraesCS2A01G508000 chr7B 96.429 56 2 0 3367 3422 116376450 116376395 4.260000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G508000 chr2A 734797975 734801976 4001 False 7391.000000 7391 100.000000 1 4002 1 chr2A.!!$F4 4001
1 TraesCS2A01G508000 chr2A 734737699 734738491 792 False 1352.000000 1352 97.478000 1791 2582 1 chr2A.!!$F2 791
2 TraesCS2A01G508000 chr2A 734775682 734776498 816 False 1288.000000 1288 95.244000 1 812 1 chr2A.!!$F3 811
3 TraesCS2A01G508000 chr2A 135453269 135454089 820 False 1142.000000 1142 92.000000 1 812 1 chr2A.!!$F1 811
4 TraesCS2A01G508000 chr2A 729185458 729186737 1279 False 228.750000 383 96.838500 1395 2852 4 chr2A.!!$F5 1457
5 TraesCS2A01G508000 chr4A 196295781 196296594 813 True 1301.000000 1301 95.577000 3 812 1 chr4A.!!$R1 809
6 TraesCS2A01G508000 chr4A 444822870 444823689 819 False 1125.000000 1125 91.636000 1 812 1 chr4A.!!$F1 811
7 TraesCS2A01G508000 chr1A 148641072 148641893 821 False 1299.000000 1299 95.377000 1 812 1 chr1A.!!$F1 811
8 TraesCS2A01G508000 chr1A 577724644 577725472 828 True 1118.000000 1118 91.315000 1 814 1 chr1A.!!$R1 813
9 TraesCS2A01G508000 chr2B 731711060 731712690 1630 False 963.500000 1249 89.728000 813 4002 2 chr2B.!!$F1 3189
10 TraesCS2A01G508000 chr5A 448726024 448726843 819 True 1247.000000 1247 94.268000 1 812 1 chr5A.!!$R4 811
11 TraesCS2A01G508000 chr5A 18191460 18192280 820 True 1059.000000 1059 90.146000 2 812 1 chr5A.!!$R1 810
12 TraesCS2A01G508000 chr5A 37400110 37401808 1698 True 475.333333 595 83.867000 813 4002 3 chr5A.!!$R6 3189
13 TraesCS2A01G508000 chr5A 37193041 37193917 876 True 451.000000 562 85.143000 809 3255 2 chr5A.!!$R5 2446
14 TraesCS2A01G508000 chr7A 243692021 243692820 799 True 1101.000000 1101 91.484000 1 812 1 chr7A.!!$R1 811
15 TraesCS2A01G508000 chr7A 257942611 257943429 818 True 979.000000 979 88.499000 1 812 1 chr7A.!!$R2 811
16 TraesCS2A01G508000 chr7A 709290662 709291208 546 True 832.000000 832 93.673000 1999 2567 1 chr7A.!!$R3 568
17 TraesCS2A01G508000 chr6A 34952535 34953355 820 False 1075.000000 1075 90.511000 1 812 1 chr6A.!!$F1 811
18 TraesCS2A01G508000 chr2D 601427363 601429124 1761 False 640.666667 976 87.666000 813 4002 3 chr2D.!!$F3 3189
19 TraesCS2A01G508000 chr4B 637350108 637351274 1166 False 408.000000 739 94.338000 1793 2581 3 chr4B.!!$F1 788
20 TraesCS2A01G508000 chr5D 46084826 46085334 508 True 418.000000 418 82.027000 2852 3359 1 chr5D.!!$R1 507
21 TraesCS2A01G508000 chr5D 46263519 46264074 555 True 361.000000 361 79.857000 3490 4002 1 chr5D.!!$R2 512
22 TraesCS2A01G508000 chr5D 406475759 406476912 1153 True 266.250000 427 94.487250 1282 2851 4 chr5D.!!$R4 1569
23 TraesCS2A01G508000 chr5D 530408193 530409334 1141 False 238.400000 444 95.220600 1282 2851 5 chr5D.!!$F3 1569
24 TraesCS2A01G508000 chr5B 48146837 48148532 1695 False 459.666667 573 83.424667 813 3997 3 chr5B.!!$F2 3184
25 TraesCS2A01G508000 chr5B 47126004 47127166 1162 True 250.333333 337 80.174333 2853 4002 3 chr5B.!!$R4 1149
26 TraesCS2A01G508000 chr3D 92362261 92363610 1349 False 268.750000 440 96.311000 1283 2852 4 chr3D.!!$F1 1569
27 TraesCS2A01G508000 chr7D 140293123 140294272 1149 False 278.500000 427 96.089500 1282 2851 4 chr7D.!!$F2 1569
28 TraesCS2A01G508000 chr1D 46385877 46386883 1006 False 256.000000 407 93.333000 1395 2852 4 chr1D.!!$F2 1457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 674 1.104630 GCCCTCTACGCAACTAGTCT 58.895 55.0 0.0 0.0 0.0 3.24 F
1179 1207 0.892755 ACAAGTATGCGACGGGAAGA 59.107 50.0 0.0 0.0 0.0 2.87 F
2697 3852 0.036306 CACCTTGTTAAGCGGGACCT 59.964 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 2102 0.105709 CCCTCTCCTTCTCCCTCTCC 60.106 65.000 0.0 0.0 0.0 3.71 R
2791 3947 1.270094 TGCAGAAACCACACCTCTACG 60.270 52.381 0.0 0.0 0.0 3.51 R
3741 5220 2.031120 CACTGCCAGTTTCAAGGGAAA 58.969 47.619 0.0 0.0 40.6 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.147595 TACTGCCGCGCTGAGGAT 61.148 61.111 5.56 0.00 0.00 3.24
88 91 1.598685 GGAACGGACCCAAAAGCGA 60.599 57.895 0.00 0.00 0.00 4.93
646 674 1.104630 GCCCTCTACGCAACTAGTCT 58.895 55.000 0.00 0.00 0.00 3.24
878 906 5.163519 CCGACCTTTTGGATAATCTTGCAAT 60.164 40.000 0.00 0.00 44.07 3.56
882 910 9.822185 GACCTTTTGGATAATCTTGCAATATTT 57.178 29.630 14.41 4.91 44.07 1.40
897 925 6.595682 TGCAATATTTCTAGAGGGGAAGAAG 58.404 40.000 0.00 0.00 33.49 2.85
1113 1141 2.831333 CCTTCCATGGACGATCTTGAG 58.169 52.381 19.45 9.14 0.00 3.02
1135 1163 6.944290 TGAGGATGATGACAAAAGAGAAATGT 59.056 34.615 0.00 0.00 0.00 2.71
1150 1178 8.677148 AAGAGAAATGTTTAAGCACTTACTCA 57.323 30.769 14.59 0.00 0.00 3.41
1161 1189 2.005451 CACTTACTCATGGCTGCAGAC 58.995 52.381 20.43 17.52 0.00 3.51
1175 1203 1.421410 GCAGACAAGTATGCGACGGG 61.421 60.000 3.91 0.00 38.08 5.28
1179 1207 0.892755 ACAAGTATGCGACGGGAAGA 59.107 50.000 0.00 0.00 0.00 2.87
1187 1215 1.207089 TGCGACGGGAAGAATGAAGAT 59.793 47.619 0.00 0.00 0.00 2.40
1339 1367 2.812011 GTTGCAGAAACCACGGTTCTAT 59.188 45.455 1.05 0.00 37.35 1.98
1423 1536 2.094182 GGATAGAGTGACGTGGCAAAGA 60.094 50.000 0.00 0.00 0.00 2.52
1428 1541 3.632145 AGAGTGACGTGGCAAAGAAAAAT 59.368 39.130 0.00 0.00 0.00 1.82
1594 2102 3.041211 TGGAGAGAGAGAGAGAGAGAGG 58.959 54.545 0.00 0.00 0.00 3.69
1600 2108 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
1601 2109 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
1602 2110 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
1603 2111 1.421646 GAGAGAGAGAGGGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
1604 2112 1.010793 AGAGAGAGAGGGAGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
1605 2113 1.850345 GAGAGAGAGGGAGAGGGAGAA 59.150 57.143 0.00 0.00 0.00 2.87
1606 2114 1.852965 AGAGAGAGGGAGAGGGAGAAG 59.147 57.143 0.00 0.00 0.00 2.85
1607 2115 0.933700 AGAGAGGGAGAGGGAGAAGG 59.066 60.000 0.00 0.00 0.00 3.46
1608 2116 0.930726 GAGAGGGAGAGGGAGAAGGA 59.069 60.000 0.00 0.00 0.00 3.36
1609 2117 0.933700 AGAGGGAGAGGGAGAAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
1610 2118 0.930726 GAGGGAGAGGGAGAAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
1611 2119 0.933700 AGGGAGAGGGAGAAGGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
1612 2120 0.105709 GGGAGAGGGAGAAGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
1613 2121 0.105709 GGAGAGGGAGAAGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
1614 2122 0.930726 GAGAGGGAGAAGGAGAGGGA 59.069 60.000 0.00 0.00 0.00 4.20
1615 2123 0.933700 AGAGGGAGAAGGAGAGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
1616 2124 0.930726 GAGGGAGAAGGAGAGGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
1617 2125 0.933700 AGGGAGAAGGAGAGGGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
1618 2126 0.105709 GGGAGAAGGAGAGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
1619 2127 0.105709 GGAGAAGGAGAGGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
1620 2128 0.930726 GAGAAGGAGAGGGAGAGGGA 59.069 60.000 0.00 0.00 0.00 4.20
1621 2129 0.933700 AGAAGGAGAGGGAGAGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
1622 2130 0.930726 GAAGGAGAGGGAGAGGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
1623 2131 1.503347 GAAGGAGAGGGAGAGGGAGAT 59.497 57.143 0.00 0.00 0.00 2.75
1624 2132 0.859760 AGGAGAGGGAGAGGGAGATG 59.140 60.000 0.00 0.00 0.00 2.90
1625 2133 0.178935 GGAGAGGGAGAGGGAGATGG 60.179 65.000 0.00 0.00 0.00 3.51
1626 2134 0.856982 GAGAGGGAGAGGGAGATGGA 59.143 60.000 0.00 0.00 0.00 3.41
1627 2135 0.859760 AGAGGGAGAGGGAGATGGAG 59.140 60.000 0.00 0.00 0.00 3.86
1628 2136 0.856982 GAGGGAGAGGGAGATGGAGA 59.143 60.000 0.00 0.00 0.00 3.71
1629 2137 0.859760 AGGGAGAGGGAGATGGAGAG 59.140 60.000 0.00 0.00 0.00 3.20
1630 2138 0.178935 GGGAGAGGGAGATGGAGAGG 60.179 65.000 0.00 0.00 0.00 3.69
1631 2139 0.178935 GGAGAGGGAGATGGAGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
1632 2140 0.856982 GAGAGGGAGATGGAGAGGGA 59.143 60.000 0.00 0.00 0.00 4.20
1633 2141 0.859760 AGAGGGAGATGGAGAGGGAG 59.140 60.000 0.00 0.00 0.00 4.30
1634 2142 0.856982 GAGGGAGATGGAGAGGGAGA 59.143 60.000 0.00 0.00 0.00 3.71
1635 2143 0.859760 AGGGAGATGGAGAGGGAGAG 59.140 60.000 0.00 0.00 0.00 3.20
1636 2144 0.856982 GGGAGATGGAGAGGGAGAGA 59.143 60.000 0.00 0.00 0.00 3.10
1637 2145 1.203050 GGGAGATGGAGAGGGAGAGAG 60.203 61.905 0.00 0.00 0.00 3.20
1638 2146 1.780309 GGAGATGGAGAGGGAGAGAGA 59.220 57.143 0.00 0.00 0.00 3.10
1639 2147 2.224867 GGAGATGGAGAGGGAGAGAGAG 60.225 59.091 0.00 0.00 0.00 3.20
1640 2148 2.711009 GAGATGGAGAGGGAGAGAGAGA 59.289 54.545 0.00 0.00 0.00 3.10
1641 2149 2.713167 AGATGGAGAGGGAGAGAGAGAG 59.287 54.545 0.00 0.00 0.00 3.20
1642 2150 2.278657 TGGAGAGGGAGAGAGAGAGA 57.721 55.000 0.00 0.00 0.00 3.10
1643 2151 2.126882 TGGAGAGGGAGAGAGAGAGAG 58.873 57.143 0.00 0.00 0.00 3.20
1782 2521 3.060866 GGCACGACCTTGTCCTCT 58.939 61.111 0.00 0.00 34.51 3.69
1783 2522 1.371558 GGCACGACCTTGTCCTCTT 59.628 57.895 0.00 0.00 34.51 2.85
1784 2523 0.250338 GGCACGACCTTGTCCTCTTT 60.250 55.000 0.00 0.00 34.51 2.52
1785 2524 1.594331 GCACGACCTTGTCCTCTTTT 58.406 50.000 0.00 0.00 0.00 2.27
1786 2525 1.947456 GCACGACCTTGTCCTCTTTTT 59.053 47.619 0.00 0.00 0.00 1.94
1841 2580 5.306678 TCTTTGGACTTTGGTAATTTGCCAT 59.693 36.000 7.07 0.00 35.71 4.40
1851 2590 6.524101 TGGTAATTTGCCATCCTTTACTTC 57.476 37.500 1.64 0.00 0.00 3.01
2034 2774 1.871126 CTCGTGCTGCACTCTCTCCA 61.871 60.000 28.04 4.71 31.34 3.86
2039 2779 1.670015 CTGCACTCTCTCCAGCACA 59.330 57.895 0.00 0.00 32.87 4.57
2465 3616 3.698040 ACATTTGTTGCAGGATCCATCTC 59.302 43.478 15.82 0.00 0.00 2.75
2617 3772 5.570844 GCACCAACCTTATCCTCTTAGTTCA 60.571 44.000 0.00 0.00 0.00 3.18
2658 3813 7.546316 TCCATGCAATTTTGTCTATTTGTGATG 59.454 33.333 0.00 0.00 0.00 3.07
2697 3852 0.036306 CACCTTGTTAAGCGGGACCT 59.964 55.000 0.00 0.00 0.00 3.85
2826 3982 1.168714 CTGCAACCCTAGCCTTCAAC 58.831 55.000 0.00 0.00 0.00 3.18
2956 4112 5.772169 CCTCAAAAGATCTTTTCCTGGTCTT 59.228 40.000 26.87 4.13 40.45 3.01
3087 4244 0.918983 TATGTTGGGCTGGAGAAGGG 59.081 55.000 0.00 0.00 0.00 3.95
3256 4444 1.691976 TGGTTGGCCGGTCTGATATAG 59.308 52.381 7.97 0.00 37.67 1.31
3262 4450 4.275810 TGGCCGGTCTGATATAGGTATAC 58.724 47.826 7.97 0.00 0.00 1.47
3264 4452 4.338682 GGCCGGTCTGATATAGGTATACAG 59.661 50.000 1.90 0.00 0.00 2.74
3300 4488 2.289547 TCACTAGCAGTTGCCGTTTTTC 59.710 45.455 0.00 0.00 43.38 2.29
3306 4494 2.349912 GCAGTTGCCGTTTTTCTCTCTC 60.350 50.000 0.00 0.00 34.31 3.20
3307 4495 3.134458 CAGTTGCCGTTTTTCTCTCTCT 58.866 45.455 0.00 0.00 0.00 3.10
3308 4496 3.561725 CAGTTGCCGTTTTTCTCTCTCTT 59.438 43.478 0.00 0.00 0.00 2.85
3309 4497 4.750098 CAGTTGCCGTTTTTCTCTCTCTTA 59.250 41.667 0.00 0.00 0.00 2.10
3310 4498 5.409826 CAGTTGCCGTTTTTCTCTCTCTTAT 59.590 40.000 0.00 0.00 0.00 1.73
3311 4499 6.590292 CAGTTGCCGTTTTTCTCTCTCTTATA 59.410 38.462 0.00 0.00 0.00 0.98
3339 4585 3.589951 ATGCCTGGCTTATGTGAAGAT 57.410 42.857 21.03 0.00 0.00 2.40
3349 4596 8.213518 TGGCTTATGTGAAGATTGATAAACTC 57.786 34.615 0.00 0.00 0.00 3.01
3420 4712 9.681692 TCATTCAAAATGAAACTGATAACACAG 57.318 29.630 0.00 0.00 40.12 3.66
3507 4810 5.880332 TGCCAACTGCTAGATTTTAGTTAGG 59.120 40.000 0.00 0.00 42.00 2.69
3533 4836 4.967575 CAGTTACAAATGGTTTCGTGACAC 59.032 41.667 0.00 0.00 0.00 3.67
3560 4864 3.119352 GGCTGACCAACAAAGATGGAATC 60.119 47.826 0.00 0.00 40.56 2.52
3563 4867 8.249592 GGCTGACCAACAAAGATGGAATCAAT 62.250 42.308 0.00 0.00 40.43 2.57
3564 4868 9.622100 GGCTGACCAACAAAGATGGAATCAATT 62.622 40.741 0.00 0.00 40.43 2.32
3602 4906 6.214191 TGTTCATTTTGAAAGGCACTGTAA 57.786 33.333 0.00 0.00 40.86 2.41
3603 4907 6.815089 TGTTCATTTTGAAAGGCACTGTAAT 58.185 32.000 0.00 0.00 40.86 1.89
3687 5132 7.256835 GGGTACTATGGGAAGAGAAATGATCAT 60.257 40.741 1.18 1.18 0.00 2.45
3811 5308 4.880886 CAATCACGGTTGCATATCTCAA 57.119 40.909 0.00 0.00 0.00 3.02
3819 5316 6.033831 CACGGTTGCATATCTCAATTGTTTTC 59.966 38.462 5.13 0.00 0.00 2.29
3844 5341 3.945921 GAGGTAGGATGTTGGCCTAAAAC 59.054 47.826 3.32 0.00 39.58 2.43
3847 5344 5.252164 AGGTAGGATGTTGGCCTAAAACTAA 59.748 40.000 3.32 0.00 39.58 2.24
3849 5346 6.434965 GGTAGGATGTTGGCCTAAAACTAAAA 59.565 38.462 3.32 0.00 39.58 1.52
3850 5347 7.123697 GGTAGGATGTTGGCCTAAAACTAAAAT 59.876 37.037 3.32 0.00 39.58 1.82
3852 5349 6.723977 AGGATGTTGGCCTAAAACTAAAATCA 59.276 34.615 3.32 0.00 32.92 2.57
3853 5350 7.400052 AGGATGTTGGCCTAAAACTAAAATCAT 59.600 33.333 3.32 0.00 32.92 2.45
3854 5351 8.691797 GGATGTTGGCCTAAAACTAAAATCATA 58.308 33.333 3.32 0.00 0.00 2.15
3855 5352 9.516314 GATGTTGGCCTAAAACTAAAATCATAC 57.484 33.333 3.32 0.00 0.00 2.39
3942 5460 9.304731 GCATGCACAAAAATTATTTAGAGATCA 57.695 29.630 14.21 0.00 0.00 2.92
3958 5476 5.749462 AGAGATCATTTGGAGGTAACAAGG 58.251 41.667 0.00 0.00 41.41 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.736670 GGGTCCGTTCCCTACTAGTA 57.263 55.000 1.89 1.89 43.85 1.82
331 345 2.793278 GAGAGATTCCTTCGCTCTCC 57.207 55.000 0.00 0.00 45.54 3.71
337 351 4.270566 CAGCATCTTTGAGAGATTCCTTCG 59.729 45.833 0.00 0.00 42.55 3.79
387 407 2.751259 CTCCACAACAGTAGTACCGCTA 59.249 50.000 0.00 0.00 0.00 4.26
471 493 2.182537 GGTAGTACCGTGCACCCG 59.817 66.667 12.15 3.95 0.00 5.28
646 674 3.985925 GCTCTTTCGTTTCTTTCTCGGTA 59.014 43.478 0.00 0.00 0.00 4.02
840 868 3.711814 TCGGAGGGCGGCAAATCA 61.712 61.111 12.47 0.00 0.00 2.57
841 869 3.202706 GTCGGAGGGCGGCAAATC 61.203 66.667 12.47 5.36 0.00 2.17
878 906 5.468658 CTCCCTTCTTCCCCTCTAGAAATA 58.531 45.833 0.00 0.00 30.55 1.40
882 910 1.062810 GCTCCCTTCTTCCCCTCTAGA 60.063 57.143 0.00 0.00 0.00 2.43
897 925 1.737008 GAAAGTCACGTCCGCTCCC 60.737 63.158 0.00 0.00 0.00 4.30
978 1006 1.813859 CCCGTAGAACTCCGCATCA 59.186 57.895 0.00 0.00 0.00 3.07
1113 1141 9.912634 TTAAACATTTCTCTTTTGTCATCATCC 57.087 29.630 0.00 0.00 0.00 3.51
1135 1163 3.440173 GCAGCCATGAGTAAGTGCTTAAA 59.560 43.478 0.00 0.00 0.00 1.52
1150 1178 1.386533 GCATACTTGTCTGCAGCCAT 58.613 50.000 9.47 0.00 38.28 4.40
1161 1189 2.004583 TTCTTCCCGTCGCATACTTG 57.995 50.000 0.00 0.00 0.00 3.16
1172 1200 6.226052 TCACATATCATCTTCATTCTTCCCG 58.774 40.000 0.00 0.00 0.00 5.14
1175 1203 7.935755 TCCCTTCACATATCATCTTCATTCTTC 59.064 37.037 0.00 0.00 0.00 2.87
1179 1207 6.433404 GCATCCCTTCACATATCATCTTCATT 59.567 38.462 0.00 0.00 0.00 2.57
1187 1215 4.041938 TGCATAGCATCCCTTCACATATCA 59.958 41.667 0.00 0.00 31.71 2.15
1272 1300 3.817084 TCTGCAATTCACTCTTCAGGTTG 59.183 43.478 0.00 0.00 0.00 3.77
1273 1301 4.090761 TCTGCAATTCACTCTTCAGGTT 57.909 40.909 0.00 0.00 0.00 3.50
1274 1302 3.777106 TCTGCAATTCACTCTTCAGGT 57.223 42.857 0.00 0.00 0.00 4.00
1275 1303 5.218139 GTTTTCTGCAATTCACTCTTCAGG 58.782 41.667 0.00 0.00 0.00 3.86
1276 1304 5.824429 TGTTTTCTGCAATTCACTCTTCAG 58.176 37.500 0.00 0.00 0.00 3.02
1277 1305 5.833406 TGTTTTCTGCAATTCACTCTTCA 57.167 34.783 0.00 0.00 0.00 3.02
1278 1306 5.566774 CGATGTTTTCTGCAATTCACTCTTC 59.433 40.000 0.00 0.00 0.00 2.87
1279 1307 5.239306 TCGATGTTTTCTGCAATTCACTCTT 59.761 36.000 0.00 0.00 0.00 2.85
1280 1308 4.756642 TCGATGTTTTCTGCAATTCACTCT 59.243 37.500 0.00 0.00 0.00 3.24
1423 1536 7.675062 TGTATCAGGGTGTAATTTGCATTTTT 58.325 30.769 0.00 0.00 0.00 1.94
1428 1541 4.917385 ACTGTATCAGGGTGTAATTTGCA 58.083 39.130 1.90 0.00 35.51 4.08
1523 1636 3.426568 GCCAACTCCACGAGCAGC 61.427 66.667 0.00 0.00 32.04 5.25
1524 1637 2.743928 GGCCAACTCCACGAGCAG 60.744 66.667 0.00 0.00 32.04 4.24
1525 1638 4.680237 CGGCCAACTCCACGAGCA 62.680 66.667 2.24 0.00 32.04 4.26
1526 1639 4.681978 ACGGCCAACTCCACGAGC 62.682 66.667 2.24 0.00 32.04 5.03
1527 1640 2.738521 CACGGCCAACTCCACGAG 60.739 66.667 2.24 0.00 35.52 4.18
1528 1641 3.220999 CTCACGGCCAACTCCACGA 62.221 63.158 2.24 0.00 0.00 4.35
1531 2031 4.680237 CGCTCACGGCCAACTCCA 62.680 66.667 2.24 0.00 37.74 3.86
1594 2102 0.105709 CCCTCTCCTTCTCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
1600 2108 0.105709 CCCTCTCCCTCTCCTTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
1601 2109 0.930726 TCCCTCTCCCTCTCCTTCTC 59.069 60.000 0.00 0.00 0.00 2.87
1602 2110 0.933700 CTCCCTCTCCCTCTCCTTCT 59.066 60.000 0.00 0.00 0.00 2.85
1603 2111 0.930726 TCTCCCTCTCCCTCTCCTTC 59.069 60.000 0.00 0.00 0.00 3.46
1604 2112 1.220236 CATCTCCCTCTCCCTCTCCTT 59.780 57.143 0.00 0.00 0.00 3.36
1605 2113 0.859760 CATCTCCCTCTCCCTCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
1606 2114 0.178935 CCATCTCCCTCTCCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
1607 2115 0.856982 TCCATCTCCCTCTCCCTCTC 59.143 60.000 0.00 0.00 0.00 3.20
1608 2116 0.859760 CTCCATCTCCCTCTCCCTCT 59.140 60.000 0.00 0.00 0.00 3.69
1609 2117 0.856982 TCTCCATCTCCCTCTCCCTC 59.143 60.000 0.00 0.00 0.00 4.30
1610 2118 0.859760 CTCTCCATCTCCCTCTCCCT 59.140 60.000 0.00 0.00 0.00 4.20
1611 2119 0.178935 CCTCTCCATCTCCCTCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
1612 2120 0.178935 CCCTCTCCATCTCCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
1613 2121 0.856982 TCCCTCTCCATCTCCCTCTC 59.143 60.000 0.00 0.00 0.00 3.20
1614 2122 0.859760 CTCCCTCTCCATCTCCCTCT 59.140 60.000 0.00 0.00 0.00 3.69
1615 2123 0.856982 TCTCCCTCTCCATCTCCCTC 59.143 60.000 0.00 0.00 0.00 4.30
1616 2124 0.859760 CTCTCCCTCTCCATCTCCCT 59.140 60.000 0.00 0.00 0.00 4.20
1617 2125 0.856982 TCTCTCCCTCTCCATCTCCC 59.143 60.000 0.00 0.00 0.00 4.30
1618 2126 1.780309 TCTCTCTCCCTCTCCATCTCC 59.220 57.143 0.00 0.00 0.00 3.71
1619 2127 2.711009 TCTCTCTCTCCCTCTCCATCTC 59.289 54.545 0.00 0.00 0.00 2.75
1620 2128 2.713167 CTCTCTCTCTCCCTCTCCATCT 59.287 54.545 0.00 0.00 0.00 2.90
1621 2129 2.711009 TCTCTCTCTCTCCCTCTCCATC 59.289 54.545 0.00 0.00 0.00 3.51
1622 2130 2.713167 CTCTCTCTCTCTCCCTCTCCAT 59.287 54.545 0.00 0.00 0.00 3.41
1623 2131 2.126882 CTCTCTCTCTCTCCCTCTCCA 58.873 57.143 0.00 0.00 0.00 3.86
1624 2132 2.370189 CTCTCTCTCTCTCTCCCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
1625 2133 2.370189 CCTCTCTCTCTCTCTCCCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
1626 2134 2.022035 TCCTCTCTCTCTCTCTCCCTCT 60.022 54.545 0.00 0.00 0.00 3.69
1627 2135 2.370189 CTCCTCTCTCTCTCTCTCCCTC 59.630 59.091 0.00 0.00 0.00 4.30
1628 2136 2.022035 TCTCCTCTCTCTCTCTCTCCCT 60.022 54.545 0.00 0.00 0.00 4.20
1629 2137 2.408565 TCTCCTCTCTCTCTCTCTCCC 58.591 57.143 0.00 0.00 0.00 4.30
1630 2138 3.181450 CCTTCTCCTCTCTCTCTCTCTCC 60.181 56.522 0.00 0.00 0.00 3.71
1631 2139 3.181450 CCCTTCTCCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
1632 2140 2.780010 CCCTTCTCCTCTCTCTCTCTCT 59.220 54.545 0.00 0.00 0.00 3.10
1633 2141 2.777692 TCCCTTCTCCTCTCTCTCTCTC 59.222 54.545 0.00 0.00 0.00 3.20
1634 2142 2.858644 TCCCTTCTCCTCTCTCTCTCT 58.141 52.381 0.00 0.00 0.00 3.10
1635 2143 3.117512 ACATCCCTTCTCCTCTCTCTCTC 60.118 52.174 0.00 0.00 0.00 3.20
1636 2144 2.858768 ACATCCCTTCTCCTCTCTCTCT 59.141 50.000 0.00 0.00 0.00 3.10
1637 2145 3.312736 ACATCCCTTCTCCTCTCTCTC 57.687 52.381 0.00 0.00 0.00 3.20
1638 2146 3.140144 CCTACATCCCTTCTCCTCTCTCT 59.860 52.174 0.00 0.00 0.00 3.10
1639 2147 3.496331 CCTACATCCCTTCTCCTCTCTC 58.504 54.545 0.00 0.00 0.00 3.20
1640 2148 2.178984 CCCTACATCCCTTCTCCTCTCT 59.821 54.545 0.00 0.00 0.00 3.10
1641 2149 2.604139 CCCTACATCCCTTCTCCTCTC 58.396 57.143 0.00 0.00 0.00 3.20
1642 2150 1.221781 CCCCTACATCCCTTCTCCTCT 59.778 57.143 0.00 0.00 0.00 3.69
1643 2151 1.220750 TCCCCTACATCCCTTCTCCTC 59.779 57.143 0.00 0.00 0.00 3.71
1784 2523 5.877564 GCAAATAATCAAATCCCCCGAAAAA 59.122 36.000 0.00 0.00 0.00 1.94
1785 2524 5.423886 GCAAATAATCAAATCCCCCGAAAA 58.576 37.500 0.00 0.00 0.00 2.29
1786 2525 4.141824 GGCAAATAATCAAATCCCCCGAAA 60.142 41.667 0.00 0.00 0.00 3.46
1787 2526 3.386402 GGCAAATAATCAAATCCCCCGAA 59.614 43.478 0.00 0.00 0.00 4.30
1788 2527 2.962421 GGCAAATAATCAAATCCCCCGA 59.038 45.455 0.00 0.00 0.00 5.14
1789 2528 2.697751 TGGCAAATAATCAAATCCCCCG 59.302 45.455 0.00 0.00 0.00 5.73
2465 3616 3.256631 ACTTTGCTATTTTGCCCTCTGTG 59.743 43.478 0.00 0.00 0.00 3.66
2617 3772 5.543507 TGCATGGACCAAACTGTAAAAAT 57.456 34.783 0.00 0.00 0.00 1.82
2658 3813 1.856597 GGCGGTGACACGATATAACAC 59.143 52.381 0.00 0.00 35.47 3.32
2697 3852 8.407832 TCGTTTTAAGTCCGATTATGACAGATA 58.592 33.333 0.00 0.00 35.15 1.98
2791 3947 1.270094 TGCAGAAACCACACCTCTACG 60.270 52.381 0.00 0.00 0.00 3.51
2826 3982 3.599514 GTGAATTGCAGAAAACATCGACG 59.400 43.478 0.00 0.00 0.00 5.12
2895 4051 3.243301 GCTTGCGATCACATCATCCATTT 60.243 43.478 0.00 0.00 0.00 2.32
2956 4112 7.987458 ACACTTCTCTCAAACATCTCTACAAAA 59.013 33.333 0.00 0.00 0.00 2.44
3077 4233 7.189079 ACTAAGACTTAATTCCCTTCTCCAG 57.811 40.000 0.00 0.00 0.00 3.86
3256 4444 4.532521 AGCTACCATGGATTCCTGTATACC 59.467 45.833 21.47 0.00 0.00 2.73
3262 4450 2.437281 AGTGAGCTACCATGGATTCCTG 59.563 50.000 21.47 2.55 0.00 3.86
3264 4452 3.556004 GCTAGTGAGCTACCATGGATTCC 60.556 52.174 21.47 3.48 45.98 3.01
3286 4474 3.134458 AGAGAGAGAAAAACGGCAACTG 58.866 45.455 0.00 0.00 0.00 3.16
3287 4475 3.477210 AGAGAGAGAAAAACGGCAACT 57.523 42.857 0.00 0.00 0.00 3.16
3288 4476 5.864628 ATAAGAGAGAGAAAAACGGCAAC 57.135 39.130 0.00 0.00 0.00 4.17
3300 4488 9.868277 CCAGGCATTAAAGTATATAAGAGAGAG 57.132 37.037 0.00 0.00 0.00 3.20
3308 4496 9.448438 CACATAAGCCAGGCATTAAAGTATATA 57.552 33.333 15.80 0.00 0.00 0.86
3309 4497 8.163408 TCACATAAGCCAGGCATTAAAGTATAT 58.837 33.333 15.80 0.00 0.00 0.86
3310 4498 7.513856 TCACATAAGCCAGGCATTAAAGTATA 58.486 34.615 15.80 3.17 0.00 1.47
3311 4499 6.364701 TCACATAAGCCAGGCATTAAAGTAT 58.635 36.000 15.80 0.00 0.00 2.12
3322 4568 7.284034 AGTTTATCAATCTTCACATAAGCCAGG 59.716 37.037 0.00 0.00 0.00 4.45
3406 4653 7.250569 CACAAAACTCACTGTGTTATCAGTTT 58.749 34.615 14.96 14.96 44.92 2.66
3429 4723 6.105333 ACAGATCTCTCAAAAGTGATAGCAC 58.895 40.000 2.01 2.01 45.49 4.40
3507 4810 4.273969 TCACGAAACCATTTGTAACTGTCC 59.726 41.667 0.00 0.00 31.71 4.02
3569 4873 8.992073 GCCTTTCAAAATGAACATAAACTTGAT 58.008 29.630 0.00 0.00 35.89 2.57
3570 4874 7.984050 TGCCTTTCAAAATGAACATAAACTTGA 59.016 29.630 0.00 0.00 35.89 3.02
3571 4875 8.063630 GTGCCTTTCAAAATGAACATAAACTTG 58.936 33.333 0.00 0.00 35.89 3.16
3574 4878 7.224557 ACAGTGCCTTTCAAAATGAACATAAAC 59.775 33.333 0.00 0.00 35.89 2.01
3577 4881 6.403866 ACAGTGCCTTTCAAAATGAACATA 57.596 33.333 0.00 0.00 35.89 2.29
3578 4882 5.280654 ACAGTGCCTTTCAAAATGAACAT 57.719 34.783 0.00 0.00 35.89 2.71
3580 4884 7.653311 AGAATTACAGTGCCTTTCAAAATGAAC 59.347 33.333 0.00 0.00 35.89 3.18
3585 4889 6.463995 ACAGAATTACAGTGCCTTTCAAAA 57.536 33.333 0.00 0.00 0.00 2.44
3602 4906 7.227512 GCATATAAGAAGTTGCCTGTACAGAAT 59.772 37.037 24.68 0.36 0.00 2.40
3603 4907 6.538742 GCATATAAGAAGTTGCCTGTACAGAA 59.461 38.462 24.68 8.68 0.00 3.02
3614 4924 7.434307 CAGGAAGCAATTGCATATAAGAAGTTG 59.566 37.037 30.89 10.22 45.16 3.16
3617 4927 7.035840 ACAGGAAGCAATTGCATATAAGAAG 57.964 36.000 30.89 13.72 45.16 2.85
3666 5111 8.687292 TTCAATGATCATTTCTCTTCCCATAG 57.313 34.615 18.41 3.03 0.00 2.23
3724 5203 4.100808 AGGGAAATGCAAGTTGCTGTTTTA 59.899 37.500 27.17 7.58 45.31 1.52
3741 5220 2.031120 CACTGCCAGTTTCAAGGGAAA 58.969 47.619 0.00 0.00 40.60 3.13
3852 5349 9.199982 CGTCAAATTACCGAACCATAATAGTAT 57.800 33.333 0.00 0.00 0.00 2.12
3853 5350 7.169645 GCGTCAAATTACCGAACCATAATAGTA 59.830 37.037 0.00 0.00 0.00 1.82
3854 5351 6.018507 GCGTCAAATTACCGAACCATAATAGT 60.019 38.462 0.00 0.00 0.00 2.12
3855 5352 6.018588 TGCGTCAAATTACCGAACCATAATAG 60.019 38.462 0.00 0.00 0.00 1.73
3877 5395 2.142319 CCAAAACTTTCCCCATTTGCG 58.858 47.619 0.00 0.00 32.73 4.85
3942 5460 3.895704 ACCACCTTGTTACCTCCAAAT 57.104 42.857 0.00 0.00 0.00 2.32
3951 5469 9.283768 CATGCATATTATAGAACCACCTTGTTA 57.716 33.333 0.00 0.00 0.00 2.41
3955 5473 7.749666 AGACATGCATATTATAGAACCACCTT 58.250 34.615 0.00 0.00 0.00 3.50
3958 5476 7.161404 TGGAGACATGCATATTATAGAACCAC 58.839 38.462 0.00 0.00 33.40 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.