Multiple sequence alignment - TraesCS2A01G507000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G507000 chr2A 100.000 5055 0 0 1 5055 734592704 734597758 0.000000e+00 9335.0
1 TraesCS2A01G507000 chr2A 90.167 1678 134 12 2579 4230 734586411 734588083 0.000000e+00 2156.0
2 TraesCS2A01G507000 chr2A 96.741 583 14 2 4404 4983 734533114 734532534 0.000000e+00 966.0
3 TraesCS2A01G507000 chr2A 87.689 463 26 17 1032 1480 734584601 734585046 1.260000e-140 510.0
4 TraesCS2A01G507000 chr2A 86.592 179 14 2 2306 2482 734585362 734585532 6.680000e-44 189.0
5 TraesCS2A01G507000 chr2A 96.512 86 3 0 4968 5053 734532518 734532433 5.280000e-30 143.0
6 TraesCS2A01G507000 chr2A 96.471 85 3 0 4390 4474 734597177 734597093 1.900000e-29 141.0
7 TraesCS2A01G507000 chr2A 87.500 104 11 1 2073 2176 734585061 734585162 8.890000e-23 119.0
8 TraesCS2A01G507000 chr2A 94.444 54 2 1 2525 2577 734586297 734586350 1.170000e-11 82.4
9 TraesCS2A01G507000 chr2B 90.222 1851 134 15 2580 4391 731250922 731252764 0.000000e+00 2372.0
10 TraesCS2A01G507000 chr2B 94.656 524 14 5 4473 4983 731252763 731253285 0.000000e+00 800.0
11 TraesCS2A01G507000 chr2B 95.909 220 9 0 1000 1219 731250063 731250282 1.730000e-94 357.0
12 TraesCS2A01G507000 chr2B 83.249 197 18 8 233 426 21781331 21781515 3.130000e-37 167.0
13 TraesCS2A01G507000 chr2B 94.253 87 4 1 4968 5053 731253300 731253386 1.140000e-26 132.0
14 TraesCS2A01G507000 chr2B 95.000 80 4 0 89 168 182262982 182262903 5.310000e-25 126.0
15 TraesCS2A01G507000 chr2D 89.650 1855 141 20 2580 4391 601109013 601110859 0.000000e+00 2314.0
16 TraesCS2A01G507000 chr2D 96.111 360 10 1 4698 5053 601112256 601112615 7.290000e-163 584.0
17 TraesCS2A01G507000 chr2D 89.254 335 24 8 958 1283 601108152 601108483 4.710000e-110 409.0
18 TraesCS2A01G507000 chr2D 96.596 235 6 2 4473 4706 601110858 601111091 6.140000e-104 388.0
19 TraesCS2A01G507000 chr1A 94.942 949 38 3 1 946 4370637 4371578 0.000000e+00 1478.0
20 TraesCS2A01G507000 chr3A 95.021 944 39 2 1 943 547573281 547574217 0.000000e+00 1476.0
21 TraesCS2A01G507000 chr7B 94.731 949 41 3 1 947 193961574 193960633 0.000000e+00 1467.0
22 TraesCS2A01G507000 chr7B 95.000 80 4 0 89 168 710426223 710426302 5.310000e-25 126.0
23 TraesCS2A01G507000 chr1B 94.142 956 35 6 1 942 222911213 222912161 0.000000e+00 1435.0
24 TraesCS2A01G507000 chr1B 78.983 295 39 14 233 524 469964957 469964683 4.020000e-41 180.0
25 TraesCS2A01G507000 chr1B 92.941 85 5 1 88 171 29413877 29413961 6.870000e-24 122.0
26 TraesCS2A01G507000 chr4A 93.569 933 45 6 1 928 7117639 7118561 0.000000e+00 1376.0
27 TraesCS2A01G507000 chr4A 79.644 1459 262 22 2606 4042 109844289 109845734 0.000000e+00 1016.0
28 TraesCS2A01G507000 chr4A 77.667 1303 273 16 2713 4007 110638734 110637442 0.000000e+00 778.0
29 TraesCS2A01G507000 chr4A 88.593 263 22 7 1007 1263 109787662 109787922 3.800000e-81 313.0
30 TraesCS2A01G507000 chr4A 87.778 90 10 1 4386 4474 113335601 113335690 2.490000e-18 104.0
31 TraesCS2A01G507000 chr4B 81.171 1503 273 6 2591 4087 438604905 438603407 0.000000e+00 1199.0
32 TraesCS2A01G507000 chr4B 79.671 1461 259 23 2606 4042 438381146 438379700 0.000000e+00 1018.0
33 TraesCS2A01G507000 chr4B 77.590 1303 274 16 2713 4007 437949543 437950835 0.000000e+00 773.0
34 TraesCS2A01G507000 chr4B 88.931 262 23 6 1007 1263 438607080 438606820 8.170000e-83 318.0
35 TraesCS2A01G507000 chr4D 80.769 1508 278 8 2587 4087 355283521 355282019 0.000000e+00 1168.0
36 TraesCS2A01G507000 chrUn 93.360 497 24 5 1 497 183984231 183983744 0.000000e+00 726.0
37 TraesCS2A01G507000 chrUn 88.462 104 12 0 405 508 155118901 155119004 5.310000e-25 126.0
38 TraesCS2A01G507000 chr6A 75.678 1439 303 31 2610 4013 574936163 574937589 0.000000e+00 675.0
39 TraesCS2A01G507000 chr6A 86.854 213 28 0 1006 1218 574935309 574935521 6.540000e-59 239.0
40 TraesCS2A01G507000 chr6A 82.168 286 34 12 233 514 141409383 141409655 3.940000e-56 230.0
41 TraesCS2A01G507000 chr6B 75.523 1434 310 28 2610 4013 647708788 647710210 0.000000e+00 665.0
42 TraesCS2A01G507000 chr1D 81.250 448 62 15 516 944 381042187 381041743 4.850000e-90 342.0
43 TraesCS2A01G507000 chr1D 82.547 212 29 6 1007 1217 382237631 382237427 4.020000e-41 180.0
44 TraesCS2A01G507000 chr5B 82.456 285 34 8 233 514 452815179 452814908 8.460000e-58 235.0
45 TraesCS2A01G507000 chr3B 97.561 123 3 0 3 125 42119906 42119784 1.430000e-50 211.0
46 TraesCS2A01G507000 chr5A 96.800 125 4 0 1 125 554351216 554351340 5.130000e-50 209.0
47 TraesCS2A01G507000 chr5A 81.545 233 29 7 233 463 588850734 588850954 4.020000e-41 180.0
48 TraesCS2A01G507000 chr5D 96.032 126 3 2 1 125 421857430 421857306 2.390000e-48 204.0
49 TraesCS2A01G507000 chr7A 89.706 136 14 0 371 506 682012429 682012294 1.870000e-39 174.0
50 TraesCS2A01G507000 chr7A 87.879 99 12 0 4381 4479 56727794 56727696 3.200000e-22 117.0
51 TraesCS2A01G507000 chr7A 89.412 85 9 0 4390 4474 56727701 56727785 1.920000e-19 108.0
52 TraesCS2A01G507000 chr3D 89.535 86 9 0 4390 4475 562889012 562888927 5.350000e-20 110.0
53 TraesCS2A01G507000 chr3D 88.372 86 10 0 4390 4475 562888928 562889013 2.490000e-18 104.0
54 TraesCS2A01G507000 chr7D 88.636 88 10 0 4388 4475 493547809 493547896 1.920000e-19 108.0
55 TraesCS2A01G507000 chr7D 86.316 95 13 0 4382 4476 21712449 21712543 2.490000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G507000 chr2A 734592704 734597758 5054 False 9335.00 9335 100.00000 1 5055 1 chr2A.!!$F1 5054
1 TraesCS2A01G507000 chr2A 734584601 734588083 3482 False 611.28 2156 89.27840 1032 4230 5 chr2A.!!$F2 3198
2 TraesCS2A01G507000 chr2A 734532433 734533114 681 True 554.50 966 96.62650 4404 5053 2 chr2A.!!$R2 649
3 TraesCS2A01G507000 chr2B 731250063 731253386 3323 False 915.25 2372 93.76000 1000 5053 4 chr2B.!!$F2 4053
4 TraesCS2A01G507000 chr2D 601108152 601112615 4463 False 923.75 2314 92.90275 958 5053 4 chr2D.!!$F1 4095
5 TraesCS2A01G507000 chr1A 4370637 4371578 941 False 1478.00 1478 94.94200 1 946 1 chr1A.!!$F1 945
6 TraesCS2A01G507000 chr3A 547573281 547574217 936 False 1476.00 1476 95.02100 1 943 1 chr3A.!!$F1 942
7 TraesCS2A01G507000 chr7B 193960633 193961574 941 True 1467.00 1467 94.73100 1 947 1 chr7B.!!$R1 946
8 TraesCS2A01G507000 chr1B 222911213 222912161 948 False 1435.00 1435 94.14200 1 942 1 chr1B.!!$F2 941
9 TraesCS2A01G507000 chr4A 7117639 7118561 922 False 1376.00 1376 93.56900 1 928 1 chr4A.!!$F1 927
10 TraesCS2A01G507000 chr4A 109844289 109845734 1445 False 1016.00 1016 79.64400 2606 4042 1 chr4A.!!$F3 1436
11 TraesCS2A01G507000 chr4A 110637442 110638734 1292 True 778.00 778 77.66700 2713 4007 1 chr4A.!!$R1 1294
12 TraesCS2A01G507000 chr4B 438379700 438381146 1446 True 1018.00 1018 79.67100 2606 4042 1 chr4B.!!$R1 1436
13 TraesCS2A01G507000 chr4B 437949543 437950835 1292 False 773.00 773 77.59000 2713 4007 1 chr4B.!!$F1 1294
14 TraesCS2A01G507000 chr4B 438603407 438607080 3673 True 758.50 1199 85.05100 1007 4087 2 chr4B.!!$R2 3080
15 TraesCS2A01G507000 chr4D 355282019 355283521 1502 True 1168.00 1168 80.76900 2587 4087 1 chr4D.!!$R1 1500
16 TraesCS2A01G507000 chr6A 574935309 574937589 2280 False 457.00 675 81.26600 1006 4013 2 chr6A.!!$F2 3007
17 TraesCS2A01G507000 chr6B 647708788 647710210 1422 False 665.00 665 75.52300 2610 4013 1 chr6B.!!$F1 1403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 474 0.110554 CGACCGGCGTTTACAAAAGG 60.111 55.000 6.01 0.0 34.64 3.11 F
1489 2090 0.179004 CTGGCCACAACCCACAAGTA 60.179 55.000 0.00 0.0 0.00 2.24 F
2057 3071 0.110486 TGAGGGGCCTTTCTCAACAC 59.890 55.000 17.28 0.0 37.11 3.32 F
2924 4867 0.603707 CTGGCCTCAACGTCATGTGT 60.604 55.000 3.32 0.0 0.00 3.72 F
3242 5215 1.001641 GGCCAAGAGGATGCTGTGT 60.002 57.895 0.00 0.0 36.89 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2983 0.242286 GCCACACACAAACACACACA 59.758 50.000 0.00 0.0 0.00 3.72 R
2924 4867 1.069204 GCAGAGGGCTCGTTGATGATA 59.931 52.381 0.00 0.0 40.25 2.15 R
3637 5634 1.134280 AGCACACTCATGATACCAGGC 60.134 52.381 0.00 0.0 0.00 4.85 R
3865 5880 1.880027 GTCACTTTGAGGATGCCGTTT 59.120 47.619 0.00 0.0 0.00 3.60 R
4533 6578 1.940883 CTCACGCGGGCCTACAGTAA 61.941 60.000 12.47 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.616994 GCCCTGTGGTAGCATTTTCCT 60.617 52.381 0.00 0.00 0.00 3.36
63 64 3.746492 AGTCGTAGCAAATGAAGACAACC 59.254 43.478 0.00 0.00 0.00 3.77
196 202 1.227089 ATCATCGTCGCTGTCAGGC 60.227 57.895 1.14 0.00 0.00 4.85
227 233 2.153645 TCATGTGGTTGCAGCTACAAG 58.846 47.619 22.55 18.34 0.00 3.16
312 321 7.113658 ACTCATGTACGAAGAAACCTATGAT 57.886 36.000 0.00 0.00 0.00 2.45
353 363 0.164647 CCGCTGACAGAAAAGCTTCG 59.835 55.000 6.65 0.00 37.27 3.79
354 364 0.861837 CGCTGACAGAAAAGCTTCGT 59.138 50.000 6.65 0.00 37.27 3.85
355 365 1.136502 CGCTGACAGAAAAGCTTCGTC 60.137 52.381 6.65 5.42 37.27 4.20
356 366 1.136502 GCTGACAGAAAAGCTTCGTCG 60.137 52.381 6.65 3.29 37.64 5.12
357 367 0.859232 TGACAGAAAAGCTTCGTCGC 59.141 50.000 0.00 0.00 37.64 5.19
358 368 0.164002 GACAGAAAAGCTTCGTCGCC 59.836 55.000 0.00 0.00 36.61 5.54
359 369 0.531974 ACAGAAAAGCTTCGTCGCCA 60.532 50.000 0.00 0.00 36.61 5.69
428 438 2.512896 GAGCCGGAAGCCATGGAT 59.487 61.111 18.40 6.18 45.47 3.41
464 474 0.110554 CGACCGGCGTTTACAAAAGG 60.111 55.000 6.01 0.00 34.64 3.11
508 518 8.848474 AAGCTTCAAACTTATTGTCTTAGCTA 57.152 30.769 0.00 0.00 34.44 3.32
825 835 3.942115 GGATAGAAGAGGGAAAGTTGTGC 59.058 47.826 0.00 0.00 0.00 4.57
832 842 3.660111 GAAAGTTGTGCGCGGCCT 61.660 61.111 8.83 0.00 0.00 5.19
858 868 2.036086 CGTACACACGTTTTGCTTTTGC 60.036 45.455 0.00 0.00 43.31 3.68
859 869 1.355005 ACACACGTTTTGCTTTTGCC 58.645 45.000 0.00 0.00 46.87 4.52
876 899 1.884004 CCGGTGTTTTCGTGGACGT 60.884 57.895 0.00 0.00 40.80 4.34
947 970 3.508402 GGCCTCAAACGATTCCCTTAAAA 59.492 43.478 0.00 0.00 0.00 1.52
948 971 4.021807 GGCCTCAAACGATTCCCTTAAAAA 60.022 41.667 0.00 0.00 0.00 1.94
996 1019 3.710722 CGCCTCTGCCTCAACCCT 61.711 66.667 0.00 0.00 0.00 4.34
997 1020 2.359169 CGCCTCTGCCTCAACCCTA 61.359 63.158 0.00 0.00 0.00 3.53
998 1021 1.524482 GCCTCTGCCTCAACCCTAG 59.476 63.158 0.00 0.00 0.00 3.02
1059 1085 3.277211 GACCTACTCGTGCGTGGCA 62.277 63.158 0.00 0.00 35.60 4.92
1264 1306 4.295051 TGGTTTACTTGATTTTTCAGCGC 58.705 39.130 0.00 0.00 0.00 5.92
1271 1313 4.390297 ACTTGATTTTTCAGCGCTAGTCTC 59.610 41.667 10.99 3.17 0.00 3.36
1273 1315 3.928992 TGATTTTTCAGCGCTAGTCTCTG 59.071 43.478 10.99 0.00 0.00 3.35
1276 1318 1.534729 TTCAGCGCTAGTCTCTGACA 58.465 50.000 10.99 0.00 36.36 3.58
1277 1319 1.090728 TCAGCGCTAGTCTCTGACAG 58.909 55.000 10.99 0.00 32.04 3.51
1310 1360 2.028476 CGTGTTCAGTTCCCCTGTCATA 60.028 50.000 0.00 0.00 42.19 2.15
1334 1924 4.503741 TCGATTCTTTTCTTTGCCTTGG 57.496 40.909 0.00 0.00 0.00 3.61
1341 1931 4.278419 TCTTTTCTTTGCCTTGGTTAGCTC 59.722 41.667 0.00 0.00 0.00 4.09
1342 1932 1.808411 TCTTTGCCTTGGTTAGCTCG 58.192 50.000 0.00 0.00 0.00 5.03
1347 1937 2.627945 TGCCTTGGTTAGCTCGTATTG 58.372 47.619 0.00 0.00 0.00 1.90
1352 1942 5.172934 CCTTGGTTAGCTCGTATTGTTGTA 58.827 41.667 0.00 0.00 0.00 2.41
1353 1943 5.063060 CCTTGGTTAGCTCGTATTGTTGTAC 59.937 44.000 0.00 0.00 0.00 2.90
1354 1944 5.136816 TGGTTAGCTCGTATTGTTGTACA 57.863 39.130 0.00 0.00 0.00 2.90
1357 1947 5.579511 GGTTAGCTCGTATTGTTGTACATGT 59.420 40.000 2.69 2.69 0.00 3.21
1358 1948 6.237755 GGTTAGCTCGTATTGTTGTACATGTC 60.238 42.308 0.00 0.00 0.00 3.06
1359 1949 5.073311 AGCTCGTATTGTTGTACATGTCT 57.927 39.130 0.00 0.00 0.00 3.41
1360 1950 6.203808 AGCTCGTATTGTTGTACATGTCTA 57.796 37.500 0.00 0.00 0.00 2.59
1365 1965 9.302345 CTCGTATTGTTGTACATGTCTAAGATT 57.698 33.333 0.00 0.00 0.00 2.40
1383 1984 4.641396 AGATTTTCACTCCACATCGTTCA 58.359 39.130 0.00 0.00 0.00 3.18
1386 1987 4.594123 TTTCACTCCACATCGTTCAGTA 57.406 40.909 0.00 0.00 0.00 2.74
1389 1990 5.147330 TCACTCCACATCGTTCAGTATTT 57.853 39.130 0.00 0.00 0.00 1.40
1393 1994 5.873164 ACTCCACATCGTTCAGTATTTAACC 59.127 40.000 0.00 0.00 0.00 2.85
1440 2041 6.613153 ACTGAGAAATTAGCTACCTCAAGT 57.387 37.500 12.49 10.47 34.01 3.16
1457 2058 5.394005 CCTCAAGTCCTCAACTAGTCATCAG 60.394 48.000 0.00 0.00 37.17 2.90
1486 2087 2.837291 GCTGGCCACAACCCACAA 60.837 61.111 0.00 0.00 0.00 3.33
1487 2088 2.859981 GCTGGCCACAACCCACAAG 61.860 63.158 0.00 0.00 0.00 3.16
1489 2090 0.179004 CTGGCCACAACCCACAAGTA 60.179 55.000 0.00 0.00 0.00 2.24
1490 2091 0.179004 TGGCCACAACCCACAAGTAG 60.179 55.000 0.00 0.00 0.00 2.57
1493 2094 2.290705 GGCCACAACCCACAAGTAGTAT 60.291 50.000 0.00 0.00 0.00 2.12
1494 2095 2.747446 GCCACAACCCACAAGTAGTATG 59.253 50.000 0.00 0.00 0.00 2.39
1495 2096 3.558321 GCCACAACCCACAAGTAGTATGA 60.558 47.826 0.00 0.00 0.00 2.15
1496 2097 4.253685 CCACAACCCACAAGTAGTATGAG 58.746 47.826 0.00 0.00 0.00 2.90
1497 2098 4.262894 CCACAACCCACAAGTAGTATGAGT 60.263 45.833 0.00 0.00 0.00 3.41
1499 2100 6.351881 CCACAACCCACAAGTAGTATGAGTAT 60.352 42.308 0.00 0.00 0.00 2.12
1500 2101 7.147794 CCACAACCCACAAGTAGTATGAGTATA 60.148 40.741 0.00 0.00 0.00 1.47
1503 2104 8.475639 CAACCCACAAGTAGTATGAGTATACTT 58.524 37.037 6.88 0.00 45.57 2.24
1505 2106 9.878737 ACCCACAAGTAGTATGAGTATACTTAT 57.121 33.333 14.01 14.01 45.57 1.73
1566 2167 6.747659 AAGCGTGAAATATTGTGAAAACAC 57.252 33.333 0.00 0.00 0.00 3.32
1569 2170 6.417635 AGCGTGAAATATTGTGAAAACACAAG 59.582 34.615 18.06 6.27 46.52 3.16
1570 2171 6.571588 CGTGAAATATTGTGAAAACACAAGC 58.428 36.000 18.06 8.11 46.52 4.01
1571 2172 6.198029 CGTGAAATATTGTGAAAACACAAGCA 59.802 34.615 18.06 10.71 46.52 3.91
1572 2173 7.336975 GTGAAATATTGTGAAAACACAAGCAC 58.663 34.615 18.06 15.45 46.52 4.40
1574 2175 6.826893 AATATTGTGAAAACACAAGCACAC 57.173 33.333 18.06 0.00 46.52 3.82
1575 2176 3.932545 TTGTGAAAACACAAGCACACT 57.067 38.095 10.98 0.00 40.57 3.55
1576 2177 5.574891 ATTGTGAAAACACAAGCACACTA 57.425 34.783 18.06 0.00 46.52 2.74
1578 2179 5.574891 TGTGAAAACACAAGCACACTATT 57.425 34.783 0.00 0.00 36.44 1.73
1579 2180 5.339177 TGTGAAAACACAAGCACACTATTG 58.661 37.500 0.00 0.00 36.44 1.90
1580 2181 5.124617 TGTGAAAACACAAGCACACTATTGA 59.875 36.000 0.00 0.00 36.44 2.57
1581 2182 5.682862 GTGAAAACACAAGCACACTATTGAG 59.317 40.000 0.00 0.00 0.00 3.02
1583 2184 6.094742 TGAAAACACAAGCACACTATTGAGAA 59.905 34.615 0.00 0.00 0.00 2.87
1588 2374 5.468072 CACAAGCACACTATTGAGAAGTCTT 59.532 40.000 0.00 0.00 0.00 3.01
1592 2378 8.725148 CAAGCACACTATTGAGAAGTCTTTATT 58.275 33.333 0.00 0.00 0.00 1.40
1615 2401 5.581126 TGAAATGTATGGTCCTTCAATGC 57.419 39.130 0.00 0.00 0.00 3.56
1623 2409 3.114606 TGGTCCTTCAATGCCTCTGATA 58.885 45.455 0.00 0.00 0.00 2.15
1625 2411 4.018506 TGGTCCTTCAATGCCTCTGATAAA 60.019 41.667 0.00 0.00 0.00 1.40
1626 2412 5.136105 GGTCCTTCAATGCCTCTGATAAAT 58.864 41.667 0.00 0.00 0.00 1.40
1651 2437 4.331717 GGTTTCCGGTCATGTTATACAGTG 59.668 45.833 0.00 0.00 0.00 3.66
1652 2438 5.172934 GTTTCCGGTCATGTTATACAGTGA 58.827 41.667 0.00 0.00 0.00 3.41
1653 2439 5.607939 TTCCGGTCATGTTATACAGTGAT 57.392 39.130 0.00 0.00 0.00 3.06
1654 2440 6.718522 TTCCGGTCATGTTATACAGTGATA 57.281 37.500 0.00 0.00 0.00 2.15
1689 2475 5.237815 TCAGTTGTGTTACATCCTGATGAC 58.762 41.667 13.81 3.47 41.20 3.06
1690 2476 5.012046 TCAGTTGTGTTACATCCTGATGACT 59.988 40.000 13.81 2.44 41.20 3.41
1692 2478 5.934625 AGTTGTGTTACATCCTGATGACTTC 59.065 40.000 13.81 2.81 41.20 3.01
1712 2498 9.554395 TGACTTCAGATTTGTATACTTTGTCAA 57.446 29.630 4.17 0.00 0.00 3.18
1723 2509 9.562583 TTGTATACTTTGTCAAAACTGTTTCAC 57.437 29.630 6.20 7.22 0.00 3.18
1729 2515 8.739972 ACTTTGTCAAAACTGTTTCACTAAGAT 58.260 29.630 26.85 17.10 30.31 2.40
1730 2516 9.573133 CTTTGTCAAAACTGTTTCACTAAGATT 57.427 29.630 21.42 0.21 0.00 2.40
1731 2517 8.909708 TTGTCAAAACTGTTTCACTAAGATTG 57.090 30.769 6.20 0.00 0.00 2.67
1732 2518 8.275015 TGTCAAAACTGTTTCACTAAGATTGA 57.725 30.769 6.20 0.70 0.00 2.57
1733 2519 8.735315 TGTCAAAACTGTTTCACTAAGATTGAA 58.265 29.630 6.20 0.00 0.00 2.69
1734 2520 9.226345 GTCAAAACTGTTTCACTAAGATTGAAG 57.774 33.333 6.20 0.00 34.50 3.02
1735 2521 8.956426 TCAAAACTGTTTCACTAAGATTGAAGT 58.044 29.630 6.20 0.00 34.50 3.01
1736 2522 9.573133 CAAAACTGTTTCACTAAGATTGAAGTT 57.427 29.630 6.20 0.00 34.50 2.66
1739 2525 9.788960 AACTGTTTCACTAAGATTGAAGTTTTC 57.211 29.630 0.00 0.00 34.50 2.29
1741 2527 8.287439 TGTTTCACTAAGATTGAAGTTTTCCA 57.713 30.769 0.00 0.00 34.50 3.53
1742 2528 8.912988 TGTTTCACTAAGATTGAAGTTTTCCAT 58.087 29.630 0.00 0.00 34.50 3.41
1743 2529 9.185192 GTTTCACTAAGATTGAAGTTTTCCATG 57.815 33.333 0.00 0.00 34.50 3.66
1745 2531 8.099364 TCACTAAGATTGAAGTTTTCCATGTC 57.901 34.615 0.00 0.00 0.00 3.06
1747 2533 8.019669 CACTAAGATTGAAGTTTTCCATGTCAG 58.980 37.037 0.00 0.00 0.00 3.51
1748 2534 7.939039 ACTAAGATTGAAGTTTTCCATGTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
1749 2535 7.587037 AAGATTGAAGTTTTCCATGTCAGAA 57.413 32.000 0.00 0.00 0.00 3.02
1750 2536 7.771927 AGATTGAAGTTTTCCATGTCAGAAT 57.228 32.000 0.00 0.00 0.00 2.40
1751 2537 7.824672 AGATTGAAGTTTTCCATGTCAGAATC 58.175 34.615 0.00 0.00 0.00 2.52
1752 2538 7.668886 AGATTGAAGTTTTCCATGTCAGAATCT 59.331 33.333 0.00 0.00 0.00 2.40
1757 2543 6.218746 AGTTTTCCATGTCAGAATCTTTTGC 58.781 36.000 0.00 0.00 0.00 3.68
1768 2554 6.703165 GTCAGAATCTTTTGCTGGATTTGTTT 59.297 34.615 0.00 0.00 33.05 2.83
1769 2555 6.702723 TCAGAATCTTTTGCTGGATTTGTTTG 59.297 34.615 0.00 0.00 33.05 2.93
1770 2556 6.702723 CAGAATCTTTTGCTGGATTTGTTTGA 59.297 34.615 0.00 0.00 33.05 2.69
1772 2558 7.935210 AGAATCTTTTGCTGGATTTGTTTGAAT 59.065 29.630 0.00 0.00 33.05 2.57
1773 2559 6.847956 TCTTTTGCTGGATTTGTTTGAATG 57.152 33.333 0.00 0.00 0.00 2.67
1774 2560 5.236911 TCTTTTGCTGGATTTGTTTGAATGC 59.763 36.000 0.00 0.00 0.00 3.56
1776 2562 5.465532 TTGCTGGATTTGTTTGAATGCTA 57.534 34.783 0.00 0.00 0.00 3.49
1779 2565 7.167924 TGCTGGATTTGTTTGAATGCTATTA 57.832 32.000 0.00 0.00 0.00 0.98
1780 2566 7.609960 TGCTGGATTTGTTTGAATGCTATTAA 58.390 30.769 0.00 0.00 0.00 1.40
1784 2570 9.598517 TGGATTTGTTTGAATGCTATTAATTCC 57.401 29.630 0.00 0.00 33.85 3.01
1827 2613 8.410673 TGTACATAAATTGTAACCCACATGTT 57.589 30.769 0.00 0.00 42.37 2.71
1844 2630 6.875948 ACATGTTTATGTGCTCTGTTGTAA 57.124 33.333 0.00 0.00 45.54 2.41
1845 2631 7.270757 ACATGTTTATGTGCTCTGTTGTAAA 57.729 32.000 0.00 0.00 45.54 2.01
1863 2649 8.054510 GTTGTAAACTTCTTTTTCTGCTGATG 57.945 34.615 0.00 0.00 45.32 3.07
1864 2650 6.738114 TGTAAACTTCTTTTTCTGCTGATGG 58.262 36.000 0.00 0.00 0.00 3.51
1865 2651 5.859205 AAACTTCTTTTTCTGCTGATGGT 57.141 34.783 0.00 0.00 0.00 3.55
1866 2652 5.444663 AACTTCTTTTTCTGCTGATGGTC 57.555 39.130 0.00 0.00 0.00 4.02
1881 2895 4.808649 GTCGTCCAGACCGATTCC 57.191 61.111 0.00 0.00 43.95 3.01
1889 2903 4.399618 CGTCCAGACCGATTCCATATATCT 59.600 45.833 0.00 0.00 0.00 1.98
1890 2904 5.589050 CGTCCAGACCGATTCCATATATCTA 59.411 44.000 0.00 0.00 0.00 1.98
1891 2905 6.238511 CGTCCAGACCGATTCCATATATCTAG 60.239 46.154 0.00 0.00 0.00 2.43
1893 2907 6.829298 TCCAGACCGATTCCATATATCTAGTC 59.171 42.308 0.00 0.00 0.00 2.59
1899 2913 7.340743 ACCGATTCCATATATCTAGTCTTCTGG 59.659 40.741 0.00 0.00 0.00 3.86
1900 2914 7.340743 CCGATTCCATATATCTAGTCTTCTGGT 59.659 40.741 0.00 0.00 0.00 4.00
1905 2919 9.083422 TCCATATATCTAGTCTTCTGGTTCAAG 57.917 37.037 0.00 0.00 0.00 3.02
1945 2959 7.611467 TCTGTAATTCTGTATGCTCCAAACATT 59.389 33.333 0.00 0.00 0.00 2.71
1947 2961 8.673711 TGTAATTCTGTATGCTCCAAACATTAC 58.326 33.333 0.00 0.00 0.00 1.89
1948 2962 7.944729 AATTCTGTATGCTCCAAACATTACT 57.055 32.000 0.00 0.00 0.00 2.24
1950 2964 7.843490 TTCTGTATGCTCCAAACATTACTAC 57.157 36.000 0.00 0.00 0.00 2.73
1952 2966 4.569162 TGTATGCTCCAAACATTACTACGC 59.431 41.667 0.00 0.00 0.00 4.42
1960 2974 5.688621 TCCAAACATTACTACGCGTCATATC 59.311 40.000 18.63 0.00 0.00 1.63
1966 2980 6.972901 ACATTACTACGCGTCATATCCATATG 59.027 38.462 18.63 11.66 41.10 1.78
1967 2981 6.746745 TTACTACGCGTCATATCCATATGA 57.253 37.500 18.63 5.32 44.93 2.15
1979 2993 8.750515 TCATATCCATATGATTGTGTGTGTTT 57.249 30.769 3.65 0.00 42.96 2.83
1980 2994 8.623030 TCATATCCATATGATTGTGTGTGTTTG 58.377 33.333 3.65 0.00 42.96 2.93
1981 2995 6.839124 ATCCATATGATTGTGTGTGTTTGT 57.161 33.333 3.65 0.00 0.00 2.83
1982 2996 6.011476 TCCATATGATTGTGTGTGTTTGTG 57.989 37.500 3.65 0.00 0.00 3.33
1984 2998 5.630264 CCATATGATTGTGTGTGTTTGTGTG 59.370 40.000 3.65 0.00 0.00 3.82
1985 2999 4.717233 ATGATTGTGTGTGTTTGTGTGT 57.283 36.364 0.00 0.00 0.00 3.72
1986 3000 3.831112 TGATTGTGTGTGTTTGTGTGTG 58.169 40.909 0.00 0.00 0.00 3.82
1988 3002 0.242286 TGTGTGTGTTTGTGTGTGGC 59.758 50.000 0.00 0.00 0.00 5.01
1989 3003 0.242286 GTGTGTGTTTGTGTGTGGCA 59.758 50.000 0.00 0.00 0.00 4.92
1990 3004 0.961753 TGTGTGTTTGTGTGTGGCAA 59.038 45.000 0.00 0.00 0.00 4.52
1992 3006 1.067915 GTGTGTTTGTGTGTGGCAAGT 60.068 47.619 0.00 0.00 0.00 3.16
1993 3007 1.615883 TGTGTTTGTGTGTGGCAAGTT 59.384 42.857 0.00 0.00 0.00 2.66
1994 3008 2.036475 TGTGTTTGTGTGTGGCAAGTTT 59.964 40.909 0.00 0.00 0.00 2.66
1995 3009 2.411409 GTGTTTGTGTGTGGCAAGTTTG 59.589 45.455 0.00 0.00 0.00 2.93
1996 3010 1.999024 GTTTGTGTGTGGCAAGTTTGG 59.001 47.619 0.00 0.00 0.00 3.28
1997 3011 1.261480 TTGTGTGTGGCAAGTTTGGT 58.739 45.000 0.00 0.00 0.00 3.67
1998 3012 1.261480 TGTGTGTGGCAAGTTTGGTT 58.739 45.000 0.00 0.00 0.00 3.67
1999 3013 2.447443 TGTGTGTGGCAAGTTTGGTTA 58.553 42.857 0.00 0.00 0.00 2.85
2000 3014 2.826128 TGTGTGTGGCAAGTTTGGTTAA 59.174 40.909 0.00 0.00 0.00 2.01
2001 3015 3.119316 TGTGTGTGGCAAGTTTGGTTAAG 60.119 43.478 0.00 0.00 0.00 1.85
2002 3016 3.129638 GTGTGTGGCAAGTTTGGTTAAGA 59.870 43.478 0.00 0.00 0.00 2.10
2003 3017 3.957497 TGTGTGGCAAGTTTGGTTAAGAT 59.043 39.130 0.00 0.00 0.00 2.40
2004 3018 5.009210 GTGTGTGGCAAGTTTGGTTAAGATA 59.991 40.000 0.00 0.00 0.00 1.98
2005 3019 5.009210 TGTGTGGCAAGTTTGGTTAAGATAC 59.991 40.000 0.00 0.00 0.00 2.24
2006 3020 4.521256 TGTGGCAAGTTTGGTTAAGATACC 59.479 41.667 0.00 0.00 38.73 2.73
2007 3021 4.765339 GTGGCAAGTTTGGTTAAGATACCT 59.235 41.667 0.00 0.00 39.04 3.08
2008 3022 5.243060 GTGGCAAGTTTGGTTAAGATACCTT 59.757 40.000 0.00 0.00 39.04 3.50
2009 3023 5.836358 TGGCAAGTTTGGTTAAGATACCTTT 59.164 36.000 0.00 0.00 39.04 3.11
2010 3024 6.156519 GGCAAGTTTGGTTAAGATACCTTTG 58.843 40.000 0.00 0.00 39.04 2.77
2011 3025 6.239204 GGCAAGTTTGGTTAAGATACCTTTGT 60.239 38.462 0.00 0.00 39.04 2.83
2012 3026 7.040271 GGCAAGTTTGGTTAAGATACCTTTGTA 60.040 37.037 0.00 0.00 39.04 2.41
2013 3027 8.021396 GCAAGTTTGGTTAAGATACCTTTGTAG 58.979 37.037 0.00 0.00 39.04 2.74
2014 3028 7.683437 AGTTTGGTTAAGATACCTTTGTAGC 57.317 36.000 0.00 0.00 39.04 3.58
2015 3029 7.228590 AGTTTGGTTAAGATACCTTTGTAGCA 58.771 34.615 0.00 0.00 39.04 3.49
2016 3030 7.174426 AGTTTGGTTAAGATACCTTTGTAGCAC 59.826 37.037 0.00 0.00 39.04 4.40
2017 3031 6.116711 TGGTTAAGATACCTTTGTAGCACA 57.883 37.500 0.00 0.00 39.04 4.57
2018 3032 6.170506 TGGTTAAGATACCTTTGTAGCACAG 58.829 40.000 0.00 0.00 39.04 3.66
2019 3033 6.014070 TGGTTAAGATACCTTTGTAGCACAGA 60.014 38.462 0.00 0.00 39.04 3.41
2020 3034 7.048512 GGTTAAGATACCTTTGTAGCACAGAT 58.951 38.462 0.00 0.00 35.80 2.90
2021 3035 7.553044 GGTTAAGATACCTTTGTAGCACAGATT 59.447 37.037 0.00 0.00 35.80 2.40
2022 3036 8.604890 GTTAAGATACCTTTGTAGCACAGATTC 58.395 37.037 0.00 0.00 35.80 2.52
2023 3037 6.299805 AGATACCTTTGTAGCACAGATTCA 57.700 37.500 0.00 0.00 35.80 2.57
2024 3038 6.711277 AGATACCTTTGTAGCACAGATTCAA 58.289 36.000 0.00 0.00 35.80 2.69
2025 3039 7.168219 AGATACCTTTGTAGCACAGATTCAAA 58.832 34.615 0.00 0.00 35.80 2.69
2026 3040 7.831193 AGATACCTTTGTAGCACAGATTCAAAT 59.169 33.333 0.00 0.00 35.80 2.32
2027 3041 6.259550 ACCTTTGTAGCACAGATTCAAATC 57.740 37.500 0.00 0.00 35.64 2.17
2028 3042 5.183904 ACCTTTGTAGCACAGATTCAAATCC 59.816 40.000 0.00 0.00 36.04 3.01
2029 3043 5.183713 CCTTTGTAGCACAGATTCAAATCCA 59.816 40.000 0.00 0.00 36.04 3.41
2049 3063 1.533994 GCTTGGTTGAGGGGCCTTT 60.534 57.895 0.84 0.00 0.00 3.11
2050 3064 1.536073 GCTTGGTTGAGGGGCCTTTC 61.536 60.000 0.84 2.21 0.00 2.62
2051 3065 0.113190 CTTGGTTGAGGGGCCTTTCT 59.887 55.000 0.84 0.00 0.00 2.52
2052 3066 0.112412 TTGGTTGAGGGGCCTTTCTC 59.888 55.000 0.84 8.49 0.00 2.87
2054 3068 0.112412 GGTTGAGGGGCCTTTCTCAA 59.888 55.000 23.06 23.06 44.67 3.02
2055 3069 3.745723 TTGAGGGGCCTTTCTCAAC 57.254 52.632 23.06 0.00 42.81 3.18
2056 3070 0.850100 TTGAGGGGCCTTTCTCAACA 59.150 50.000 23.06 10.35 42.81 3.33
2057 3071 0.110486 TGAGGGGCCTTTCTCAACAC 59.890 55.000 17.28 0.00 37.11 3.32
2058 3072 0.955919 GAGGGGCCTTTCTCAACACG 60.956 60.000 0.84 0.00 0.00 4.49
2059 3073 2.626780 GGGGCCTTTCTCAACACGC 61.627 63.158 0.84 0.00 0.00 5.34
2060 3074 1.896660 GGGCCTTTCTCAACACGCA 60.897 57.895 0.84 0.00 0.00 5.24
2061 3075 1.244019 GGGCCTTTCTCAACACGCAT 61.244 55.000 0.84 0.00 0.00 4.73
2062 3076 1.448985 GGCCTTTCTCAACACGCATA 58.551 50.000 0.00 0.00 0.00 3.14
2064 3078 2.223340 GGCCTTTCTCAACACGCATATG 60.223 50.000 0.00 0.00 0.00 1.78
2065 3079 2.223340 GCCTTTCTCAACACGCATATGG 60.223 50.000 4.56 0.00 0.00 2.74
2067 3081 3.879295 CCTTTCTCAACACGCATATGGAT 59.121 43.478 4.56 0.00 0.00 3.41
2068 3082 5.056480 CCTTTCTCAACACGCATATGGATA 58.944 41.667 4.56 0.00 0.00 2.59
2069 3083 5.050091 CCTTTCTCAACACGCATATGGATAC 60.050 44.000 4.56 0.00 0.00 2.24
2070 3084 4.937201 TCTCAACACGCATATGGATACT 57.063 40.909 4.56 0.00 37.61 2.12
2071 3085 6.399639 TTCTCAACACGCATATGGATACTA 57.600 37.500 4.56 0.00 37.61 1.82
2085 3099 9.468532 CATATGGATACTAATCATCATACCACG 57.531 37.037 0.00 0.00 33.41 4.94
2122 3136 7.040823 GGTGAAGATTACATGATCCAGATTTCC 60.041 40.741 0.00 0.00 0.00 3.13
2129 3143 6.918067 ACATGATCCAGATTTCCTATCGTA 57.082 37.500 0.00 0.00 0.00 3.43
2145 3159 8.911247 TCCTATCGTATTGTGATCAATAATCG 57.089 34.615 0.00 7.88 44.69 3.34
2152 3166 8.582096 CGTATTGTGATCAATAATCGATGAGAG 58.418 37.037 0.00 0.00 44.69 3.20
2172 3231 2.836981 AGCTTCTATGAGGTCTGCAGTT 59.163 45.455 14.67 0.29 0.00 3.16
2173 3238 4.026744 AGCTTCTATGAGGTCTGCAGTTA 58.973 43.478 14.67 0.00 0.00 2.24
2175 3240 5.130145 AGCTTCTATGAGGTCTGCAGTTATT 59.870 40.000 14.67 0.00 0.00 1.40
2205 3270 7.865706 AAACAGAATATACACAGGAATGGTC 57.134 36.000 0.00 0.00 0.00 4.02
2206 3271 5.930135 ACAGAATATACACAGGAATGGTCC 58.070 41.667 0.00 0.00 45.35 4.46
2247 3320 4.789012 ACATCGAGTGCCATTTCAATTT 57.211 36.364 0.00 0.00 0.00 1.82
2303 3416 4.906065 AAGATGCACATGTATCGCAAAT 57.094 36.364 12.71 2.98 41.21 2.32
2322 3450 6.261118 GCAAATACTGAGATTGATTGGTGTC 58.739 40.000 0.00 0.00 0.00 3.67
2384 3513 7.831753 TGAAAACTGTATGGAAACTTCACAAA 58.168 30.769 0.00 0.00 0.00 2.83
2385 3514 8.307483 TGAAAACTGTATGGAAACTTCACAAAA 58.693 29.630 0.00 0.00 0.00 2.44
2386 3515 9.313118 GAAAACTGTATGGAAACTTCACAAAAT 57.687 29.630 0.00 0.00 0.00 1.82
2387 3516 8.871686 AAACTGTATGGAAACTTCACAAAATC 57.128 30.769 0.00 0.00 0.00 2.17
2388 3517 7.581213 ACTGTATGGAAACTTCACAAAATCA 57.419 32.000 0.00 0.00 0.00 2.57
2389 3518 7.425606 ACTGTATGGAAACTTCACAAAATCAC 58.574 34.615 0.00 0.00 0.00 3.06
2390 3519 7.068103 ACTGTATGGAAACTTCACAAAATCACA 59.932 33.333 0.00 0.00 0.00 3.58
2391 3520 7.776107 TGTATGGAAACTTCACAAAATCACAA 58.224 30.769 0.00 0.00 0.00 3.33
2452 3603 1.135489 CCTTGACTGACATGCATGTGC 60.135 52.381 35.92 24.99 41.95 4.57
2453 3604 1.810755 CTTGACTGACATGCATGTGCT 59.189 47.619 35.92 17.55 41.95 4.40
2459 3610 0.731417 GACATGCATGTGCTCCTGTC 59.269 55.000 35.92 16.55 41.95 3.51
2478 3630 3.803231 TGTCTTGTGAAATGCATTGCAAC 59.197 39.130 21.95 16.05 43.62 4.17
2482 3634 3.132160 TGTGAAATGCATTGCAACTTGG 58.868 40.909 21.95 0.00 43.62 3.61
2483 3635 2.481185 GTGAAATGCATTGCAACTTGGG 59.519 45.455 21.95 0.00 43.62 4.12
2493 3661 5.405269 GCATTGCAACTTGGGTTAGTTTAAG 59.595 40.000 0.00 0.00 36.24 1.85
2499 3667 6.183360 GCAACTTGGGTTAGTTTAAGTCAGTT 60.183 38.462 0.00 0.00 36.24 3.16
2601 4542 4.295870 TGCACTTCTGTAACGAACTACTG 58.704 43.478 0.00 0.00 0.00 2.74
2634 4577 3.874873 CGAAGCGACTGATTGGCA 58.125 55.556 0.00 0.00 0.00 4.92
2666 4609 1.300931 TGCGTCTGTGCAAGGAGAC 60.301 57.895 10.43 10.43 43.02 3.36
2669 4612 1.073964 CGTCTGTGCAAGGAGACATG 58.926 55.000 17.44 0.00 38.87 3.21
2734 4677 2.799562 CGATGATCGTGGTGCAGTACAT 60.800 50.000 6.68 0.00 34.72 2.29
2739 4682 2.046285 GTGGTGCAGTACATGGGCC 61.046 63.158 0.00 0.00 0.00 5.80
2750 4693 1.075601 ACATGGGCCAGGAGAAGAAA 58.924 50.000 27.05 0.00 0.00 2.52
2835 4778 1.364901 GGGACGTCGGTGAAGAACA 59.635 57.895 9.92 0.00 0.00 3.18
2922 4865 1.672356 GCTGGCCTCAACGTCATGT 60.672 57.895 3.32 0.00 0.00 3.21
2924 4867 0.603707 CTGGCCTCAACGTCATGTGT 60.604 55.000 3.32 0.00 0.00 3.72
3213 5186 1.215382 CTCATGCGGTTGAGGACGA 59.785 57.895 0.00 0.00 39.58 4.20
3241 5214 1.751927 GGGCCAAGAGGATGCTGTG 60.752 63.158 4.39 0.00 36.89 3.66
3242 5215 1.001641 GGCCAAGAGGATGCTGTGT 60.002 57.895 0.00 0.00 36.89 3.72
3407 5380 3.430790 CGATGCCAAGATGGACAAGTCTA 60.431 47.826 0.00 0.00 40.96 2.59
3610 5583 2.262915 CTCCTGCTGGACGTCACC 59.737 66.667 18.91 1.40 37.46 4.02
3709 5724 2.363975 GGAGGGGCCATACACGACA 61.364 63.158 4.39 0.00 36.34 4.35
3796 5811 3.570212 AGGCTCCTGGGCACGTTT 61.570 61.111 8.98 0.00 43.56 3.60
3812 5827 1.672682 TTTGCGCTTACCGGCATCA 60.673 52.632 9.73 0.00 39.21 3.07
3839 5854 3.310860 CTAAGGGGCGTGCCGAAGT 62.311 63.158 4.53 0.00 36.85 3.01
3865 5880 3.210227 TGAAACCATTGAAGTCGAAGCA 58.790 40.909 0.00 0.00 0.00 3.91
3898 5913 2.202756 GTGACGGCGGAGGACATC 60.203 66.667 13.24 0.00 0.00 3.06
3934 5955 1.730501 AGAGCATCAACATCACCACG 58.269 50.000 0.00 0.00 37.82 4.94
4199 6223 6.141560 AGAAGCATAGGAAGCAAATAAAGC 57.858 37.500 0.00 0.00 0.00 3.51
4253 6282 5.817816 ACTAATTACATGAAAGAGGAAGGCG 59.182 40.000 0.00 0.00 0.00 5.52
4328 6358 5.185249 ACTGGTACTGACATTGACTAATCGT 59.815 40.000 0.00 0.00 0.00 3.73
4329 6359 6.032956 TGGTACTGACATTGACTAATCGTT 57.967 37.500 0.00 0.00 0.00 3.85
4330 6360 6.460781 TGGTACTGACATTGACTAATCGTTT 58.539 36.000 0.00 0.00 0.00 3.60
4331 6361 7.604549 TGGTACTGACATTGACTAATCGTTTA 58.395 34.615 0.00 0.00 0.00 2.01
4398 6439 9.495572 CTGATGTTTTTATATTCTACTCCCTCC 57.504 37.037 0.00 0.00 0.00 4.30
4399 6440 8.148351 TGATGTTTTTATATTCTACTCCCTCCG 58.852 37.037 0.00 0.00 0.00 4.63
4400 6441 7.427989 TGTTTTTATATTCTACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
4401 6442 7.495055 TGTTTTTATATTCTACTCCCTCCGTC 58.505 38.462 0.00 0.00 0.00 4.79
4402 6443 6.661304 TTTTATATTCTACTCCCTCCGTCC 57.339 41.667 0.00 0.00 0.00 4.79
4469 6513 6.728411 TGCTCTTATATTATAGGACGGAGGA 58.272 40.000 0.00 0.00 0.00 3.71
4533 6578 6.271857 AGAAGCAGGATGTATGTTGGATCTAT 59.728 38.462 0.00 0.00 39.31 1.98
4571 6617 4.503370 GTGAGATTAGTTGTAGCCGCTAAC 59.497 45.833 0.46 0.00 0.00 2.34
4665 6715 1.001378 GACGTTGCTTCCTTGTTGCAT 60.001 47.619 0.00 0.00 36.55 3.96
4792 8016 8.276477 CACTAAATTCTAAGGTATAACCCCCAA 58.724 37.037 0.00 0.00 39.75 4.12
4838 8062 5.889853 TGATGAATCTCCAAAATCTTCCTGG 59.110 40.000 0.00 0.00 0.00 4.45
4888 8124 6.368213 GCAATGGAAGCATTTTCTTTTCTTG 58.632 36.000 0.00 0.00 0.00 3.02
4985 8252 4.036734 CGACCAAATTACCCCATGATTGAG 59.963 45.833 0.00 0.00 0.00 3.02
5008 8275 6.435164 AGTCTATTCCATAGCCCAACATTTT 58.565 36.000 0.00 0.00 32.85 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.146066 GACACAGGAAAATGCTACCACA 58.854 45.455 0.00 0.00 0.00 4.17
35 36 3.378911 TCATTTGCTACGACTGACACA 57.621 42.857 0.00 0.00 0.00 3.72
181 187 4.498520 CGGCCTGACAGCGACGAT 62.499 66.667 12.29 0.00 0.00 3.73
196 202 1.601166 ACCACATGATGATGATGCGG 58.399 50.000 0.00 0.00 33.36 5.69
227 233 1.068541 CGGTTGTAGCCTTTTTGCTCC 60.069 52.381 0.00 0.00 41.68 4.70
284 291 8.808529 CATAGGTTTCTTCGTACATGAGTTAAG 58.191 37.037 0.00 0.00 0.00 1.85
428 438 2.307309 CGCAGCTTTTCGTCCGTCA 61.307 57.895 0.00 0.00 0.00 4.35
508 518 1.227147 CGCCGTCGTCCATGGTTAT 60.227 57.895 12.58 0.00 32.89 1.89
510 520 3.642778 CTCGCCGTCGTCCATGGTT 62.643 63.158 12.58 0.00 36.96 3.67
606 616 2.579873 CCCCATGCTTCTGTCATAAGG 58.420 52.381 0.65 0.00 0.00 2.69
642 652 4.248842 CCACCCGTGCAGACCACA 62.249 66.667 0.00 0.00 44.91 4.17
856 866 2.181521 GTCCACGAAAACACCGGCA 61.182 57.895 0.00 0.00 0.00 5.69
858 868 1.430707 AACGTCCACGAAAACACCGG 61.431 55.000 6.03 0.00 43.02 5.28
859 869 0.315544 CAACGTCCACGAAAACACCG 60.316 55.000 6.03 0.00 43.02 4.94
948 971 0.336392 GATGGAGGAGGGGGCTTTTT 59.664 55.000 0.00 0.00 0.00 1.94
949 972 1.584717 GGATGGAGGAGGGGGCTTTT 61.585 60.000 0.00 0.00 0.00 2.27
950 973 2.009302 GGATGGAGGAGGGGGCTTT 61.009 63.158 0.00 0.00 0.00 3.51
951 974 2.368878 GGATGGAGGAGGGGGCTT 60.369 66.667 0.00 0.00 0.00 4.35
952 975 3.710631 TGGATGGAGGAGGGGGCT 61.711 66.667 0.00 0.00 0.00 5.19
953 976 3.174265 CTGGATGGAGGAGGGGGC 61.174 72.222 0.00 0.00 0.00 5.80
954 977 3.174265 GCTGGATGGAGGAGGGGG 61.174 72.222 0.00 0.00 0.00 5.40
955 978 3.174265 GGCTGGATGGAGGAGGGG 61.174 72.222 0.00 0.00 0.00 4.79
956 979 3.554342 CGGCTGGATGGAGGAGGG 61.554 72.222 0.00 0.00 0.00 4.30
977 1000 4.704833 GGTTGAGGCAGAGGCGCA 62.705 66.667 10.83 0.00 42.47 6.09
979 1002 2.303549 CTAGGGTTGAGGCAGAGGCG 62.304 65.000 0.00 0.00 42.47 5.52
983 1006 1.500474 CATCCTAGGGTTGAGGCAGA 58.500 55.000 9.46 0.00 33.73 4.26
985 1008 0.988145 CCCATCCTAGGGTTGAGGCA 60.988 60.000 9.46 0.00 44.24 4.75
995 1018 4.647615 CGTCGCCGCCCATCCTAG 62.648 72.222 0.00 0.00 0.00 3.02
1071 1097 4.351938 TCGACGCGGTTGTGGGAG 62.352 66.667 12.47 0.00 0.00 4.30
1264 1306 2.290367 CCATCGAGCTGTCAGAGACTAG 59.710 54.545 3.32 0.00 33.15 2.57
1271 1313 3.056628 GAACCCATCGAGCTGTCAG 57.943 57.895 0.00 0.00 0.00 3.51
1310 1360 5.105997 CCAAGGCAAAGAAAAGAATCGATCT 60.106 40.000 0.00 0.00 41.32 2.75
1334 1924 6.530534 AGACATGTACAACAATACGAGCTAAC 59.469 38.462 0.00 0.00 0.00 2.34
1347 1937 8.443937 GGAGTGAAAATCTTAGACATGTACAAC 58.556 37.037 0.00 0.00 0.00 3.32
1352 1942 6.533730 TGTGGAGTGAAAATCTTAGACATGT 58.466 36.000 0.00 0.00 0.00 3.21
1353 1943 7.465111 CGATGTGGAGTGAAAATCTTAGACATG 60.465 40.741 0.00 0.00 0.00 3.21
1354 1944 6.536582 CGATGTGGAGTGAAAATCTTAGACAT 59.463 38.462 0.00 0.00 0.00 3.06
1357 1947 6.037786 ACGATGTGGAGTGAAAATCTTAGA 57.962 37.500 0.00 0.00 0.00 2.10
1358 1948 6.368791 TGAACGATGTGGAGTGAAAATCTTAG 59.631 38.462 0.00 0.00 0.00 2.18
1359 1949 6.227522 TGAACGATGTGGAGTGAAAATCTTA 58.772 36.000 0.00 0.00 0.00 2.10
1360 1950 5.063204 TGAACGATGTGGAGTGAAAATCTT 58.937 37.500 0.00 0.00 0.00 2.40
1365 1965 3.469008 ACTGAACGATGTGGAGTGAAA 57.531 42.857 0.00 0.00 0.00 2.69
1411 2012 9.959721 TGAGGTAGCTAATTTCTCAGTTTTAAT 57.040 29.630 0.00 0.00 31.73 1.40
1414 2015 7.939588 ACTTGAGGTAGCTAATTTCTCAGTTTT 59.060 33.333 13.40 2.92 36.11 2.43
1427 2028 4.048970 AGTTGAGGACTTGAGGTAGCTA 57.951 45.455 0.00 0.00 33.92 3.32
1440 2041 4.220821 GGTTGACTGATGACTAGTTGAGGA 59.779 45.833 0.00 0.00 0.00 3.71
1540 2141 8.276060 TGTTTTCACAATATTTCACGCTTTAC 57.724 30.769 0.00 0.00 0.00 2.01
1566 2167 6.551385 AAAGACTTCTCAATAGTGTGCTTG 57.449 37.500 0.00 0.00 0.00 4.01
1568 2169 8.725148 CAAATAAAGACTTCTCAATAGTGTGCT 58.275 33.333 0.00 0.00 0.00 4.40
1569 2170 8.721478 TCAAATAAAGACTTCTCAATAGTGTGC 58.279 33.333 0.00 0.00 0.00 4.57
1581 2182 9.788960 GGACCATACATTTCAAATAAAGACTTC 57.211 33.333 0.00 0.00 0.00 3.01
1583 2184 9.533831 AAGGACCATACATTTCAAATAAAGACT 57.466 29.630 0.00 0.00 0.00 3.24
1592 2378 5.105392 GGCATTGAAGGACCATACATTTCAA 60.105 40.000 6.75 6.75 40.68 2.69
1596 2382 4.079558 AGAGGCATTGAAGGACCATACATT 60.080 41.667 0.00 0.00 0.00 2.71
1597 2383 3.461085 AGAGGCATTGAAGGACCATACAT 59.539 43.478 0.00 0.00 0.00 2.29
1604 2390 5.049818 CGATTTATCAGAGGCATTGAAGGAC 60.050 44.000 0.00 0.00 0.00 3.85
1665 2451 5.700832 GTCATCAGGATGTAACACAACTGAA 59.299 40.000 16.07 4.12 43.93 3.02
1666 2452 5.012046 AGTCATCAGGATGTAACACAACTGA 59.988 40.000 15.06 15.06 44.43 3.41
1667 2453 5.240891 AGTCATCAGGATGTAACACAACTG 58.759 41.667 8.97 7.61 39.72 3.16
1669 2455 5.700832 TGAAGTCATCAGGATGTAACACAAC 59.299 40.000 8.97 0.00 39.72 3.32
1692 2478 9.950680 ACAGTTTTGACAAAGTATACAAATCTG 57.049 29.630 18.97 18.97 45.34 2.90
1697 2483 9.562583 GTGAAACAGTTTTGACAAAGTATACAA 57.437 29.630 5.50 0.00 36.32 2.41
1702 2488 9.221933 TCTTAGTGAAACAGTTTTGACAAAGTA 57.778 29.630 0.00 0.00 41.43 2.24
1703 2489 8.106247 TCTTAGTGAAACAGTTTTGACAAAGT 57.894 30.769 0.00 0.00 41.43 2.66
1704 2490 9.573133 AATCTTAGTGAAACAGTTTTGACAAAG 57.427 29.630 0.00 2.19 41.43 2.77
1714 2500 8.406297 GGAAAACTTCAATCTTAGTGAAACAGT 58.594 33.333 0.00 0.00 41.43 3.55
1717 2503 9.185192 CATGGAAAACTTCAATCTTAGTGAAAC 57.815 33.333 0.00 0.00 34.68 2.78
1722 2508 7.939039 TCTGACATGGAAAACTTCAATCTTAGT 59.061 33.333 0.00 0.00 0.00 2.24
1723 2509 8.327941 TCTGACATGGAAAACTTCAATCTTAG 57.672 34.615 0.00 0.00 0.00 2.18
1725 2511 7.587037 TTCTGACATGGAAAACTTCAATCTT 57.413 32.000 0.00 0.00 0.00 2.40
1726 2512 7.668886 AGATTCTGACATGGAAAACTTCAATCT 59.331 33.333 0.00 0.00 0.00 2.40
1727 2513 7.824672 AGATTCTGACATGGAAAACTTCAATC 58.175 34.615 0.00 0.00 0.00 2.67
1729 2515 7.587037 AAGATTCTGACATGGAAAACTTCAA 57.413 32.000 0.00 0.00 0.00 2.69
1730 2516 7.587037 AAAGATTCTGACATGGAAAACTTCA 57.413 32.000 0.00 0.00 0.00 3.02
1731 2517 7.095899 GCAAAAGATTCTGACATGGAAAACTTC 60.096 37.037 0.00 0.00 0.00 3.01
1732 2518 6.703165 GCAAAAGATTCTGACATGGAAAACTT 59.297 34.615 0.00 0.00 0.00 2.66
1733 2519 6.041296 AGCAAAAGATTCTGACATGGAAAACT 59.959 34.615 0.00 0.00 0.00 2.66
1734 2520 6.145048 CAGCAAAAGATTCTGACATGGAAAAC 59.855 38.462 0.00 0.00 0.00 2.43
1735 2521 6.218019 CAGCAAAAGATTCTGACATGGAAAA 58.782 36.000 0.00 0.00 0.00 2.29
1736 2522 5.279106 CCAGCAAAAGATTCTGACATGGAAA 60.279 40.000 0.00 0.00 0.00 3.13
1737 2523 4.219070 CCAGCAAAAGATTCTGACATGGAA 59.781 41.667 0.00 0.00 0.00 3.53
1739 2525 3.760151 TCCAGCAAAAGATTCTGACATGG 59.240 43.478 0.00 0.00 0.00 3.66
1741 2527 6.014840 ACAAATCCAGCAAAAGATTCTGACAT 60.015 34.615 0.00 0.00 31.54 3.06
1742 2528 5.302568 ACAAATCCAGCAAAAGATTCTGACA 59.697 36.000 0.00 0.00 31.54 3.58
1743 2529 5.776744 ACAAATCCAGCAAAAGATTCTGAC 58.223 37.500 0.00 0.00 31.54 3.51
1745 2531 6.702723 TCAAACAAATCCAGCAAAAGATTCTG 59.297 34.615 0.00 0.00 31.54 3.02
1747 2533 7.481275 TTCAAACAAATCCAGCAAAAGATTC 57.519 32.000 0.00 0.00 31.54 2.52
1748 2534 7.520937 GCATTCAAACAAATCCAGCAAAAGATT 60.521 33.333 0.00 0.00 34.18 2.40
1749 2535 6.072893 GCATTCAAACAAATCCAGCAAAAGAT 60.073 34.615 0.00 0.00 0.00 2.40
1750 2536 5.236911 GCATTCAAACAAATCCAGCAAAAGA 59.763 36.000 0.00 0.00 0.00 2.52
1751 2537 5.237779 AGCATTCAAACAAATCCAGCAAAAG 59.762 36.000 0.00 0.00 0.00 2.27
1752 2538 5.124645 AGCATTCAAACAAATCCAGCAAAA 58.875 33.333 0.00 0.00 0.00 2.44
1802 2588 8.410673 AACATGTGGGTTACAATTTATGTACA 57.589 30.769 0.00 0.00 44.11 2.90
1827 2613 7.801716 AAGAAGTTTACAACAGAGCACATAA 57.198 32.000 0.00 0.00 0.00 1.90
1833 2619 6.197282 GCAGAAAAAGAAGTTTACAACAGAGC 59.803 38.462 0.00 0.00 0.00 4.09
1838 2624 7.168135 CCATCAGCAGAAAAAGAAGTTTACAAC 59.832 37.037 0.00 0.00 0.00 3.32
1840 2626 6.321181 ACCATCAGCAGAAAAAGAAGTTTACA 59.679 34.615 0.00 0.00 0.00 2.41
1841 2627 6.739112 ACCATCAGCAGAAAAAGAAGTTTAC 58.261 36.000 0.00 0.00 0.00 2.01
1842 2628 6.293407 CGACCATCAGCAGAAAAAGAAGTTTA 60.293 38.462 0.00 0.00 0.00 2.01
1844 2630 4.023707 CGACCATCAGCAGAAAAAGAAGTT 60.024 41.667 0.00 0.00 0.00 2.66
1845 2631 3.499918 CGACCATCAGCAGAAAAAGAAGT 59.500 43.478 0.00 0.00 0.00 3.01
1849 2635 2.160417 GGACGACCATCAGCAGAAAAAG 59.840 50.000 0.00 0.00 35.97 2.27
1853 2639 0.247460 CTGGACGACCATCAGCAGAA 59.753 55.000 7.16 0.00 45.87 3.02
1854 2640 0.611896 TCTGGACGACCATCAGCAGA 60.612 55.000 7.16 0.00 45.87 4.26
1855 2641 0.459237 GTCTGGACGACCATCAGCAG 60.459 60.000 7.16 0.00 45.87 4.24
1856 2642 1.591703 GTCTGGACGACCATCAGCA 59.408 57.895 7.16 0.00 45.87 4.41
1857 2643 4.504132 GTCTGGACGACCATCAGC 57.496 61.111 7.16 0.00 45.87 4.26
1864 2650 0.460311 ATGGAATCGGTCTGGACGAC 59.540 55.000 0.00 0.00 43.78 4.34
1865 2651 2.061509 TATGGAATCGGTCTGGACGA 57.938 50.000 0.00 0.00 45.19 4.20
1866 2652 4.399618 AGATATATGGAATCGGTCTGGACG 59.600 45.833 0.00 0.00 0.00 4.79
1872 2886 8.402472 CAGAAGACTAGATATATGGAATCGGTC 58.598 40.741 0.00 0.00 34.39 4.79
1874 2888 7.340743 ACCAGAAGACTAGATATATGGAATCGG 59.659 40.741 11.92 0.00 0.00 4.18
1875 2889 8.287439 ACCAGAAGACTAGATATATGGAATCG 57.713 38.462 11.92 0.00 0.00 3.34
1916 2930 9.277783 GTTTGGAGCATACAGAATTACAGATAT 57.722 33.333 0.00 0.00 0.00 1.63
1917 2931 8.264347 TGTTTGGAGCATACAGAATTACAGATA 58.736 33.333 0.00 0.00 0.00 1.98
1918 2932 7.112122 TGTTTGGAGCATACAGAATTACAGAT 58.888 34.615 0.00 0.00 0.00 2.90
1919 2933 6.472016 TGTTTGGAGCATACAGAATTACAGA 58.528 36.000 0.00 0.00 0.00 3.41
1920 2934 6.741992 TGTTTGGAGCATACAGAATTACAG 57.258 37.500 0.00 0.00 0.00 2.74
1921 2935 7.701539 AATGTTTGGAGCATACAGAATTACA 57.298 32.000 0.00 0.00 29.94 2.41
1922 2936 8.893727 AGTAATGTTTGGAGCATACAGAATTAC 58.106 33.333 0.00 0.00 29.94 1.89
1924 2938 7.944729 AGTAATGTTTGGAGCATACAGAATT 57.055 32.000 0.00 0.00 29.94 2.17
1925 2939 7.224753 CGTAGTAATGTTTGGAGCATACAGAAT 59.775 37.037 0.00 0.00 29.94 2.40
1928 2942 5.276868 GCGTAGTAATGTTTGGAGCATACAG 60.277 44.000 0.00 0.00 29.94 2.74
1930 2944 4.317839 CGCGTAGTAATGTTTGGAGCATAC 60.318 45.833 0.00 0.00 0.00 2.39
1935 2949 3.247442 TGACGCGTAGTAATGTTTGGAG 58.753 45.455 13.97 0.00 0.00 3.86
1937 2951 5.107607 GGATATGACGCGTAGTAATGTTTGG 60.108 44.000 13.97 0.00 0.00 3.28
1960 2974 5.630264 CACACAAACACACACAATCATATGG 59.370 40.000 2.13 0.00 0.00 2.74
1966 2980 3.178267 CCACACACAAACACACACAATC 58.822 45.455 0.00 0.00 0.00 2.67
1967 2981 2.673610 GCCACACACAAACACACACAAT 60.674 45.455 0.00 0.00 0.00 2.71
1968 2982 1.336332 GCCACACACAAACACACACAA 60.336 47.619 0.00 0.00 0.00 3.33
1969 2983 0.242286 GCCACACACAAACACACACA 59.758 50.000 0.00 0.00 0.00 3.72
1970 2984 0.242286 TGCCACACACAAACACACAC 59.758 50.000 0.00 0.00 0.00 3.82
1971 2985 0.961753 TTGCCACACACAAACACACA 59.038 45.000 0.00 0.00 0.00 3.72
1972 2986 1.067915 ACTTGCCACACACAAACACAC 60.068 47.619 0.00 0.00 0.00 3.82
1973 2987 1.252175 ACTTGCCACACACAAACACA 58.748 45.000 0.00 0.00 0.00 3.72
1974 2988 2.362169 AACTTGCCACACACAAACAC 57.638 45.000 0.00 0.00 0.00 3.32
1975 2989 2.611473 CCAAACTTGCCACACACAAACA 60.611 45.455 0.00 0.00 0.00 2.83
1976 2990 1.999024 CCAAACTTGCCACACACAAAC 59.001 47.619 0.00 0.00 0.00 2.93
1978 2992 1.261480 ACCAAACTTGCCACACACAA 58.739 45.000 0.00 0.00 0.00 3.33
1979 2993 1.261480 AACCAAACTTGCCACACACA 58.739 45.000 0.00 0.00 0.00 3.72
1980 2994 3.129638 TCTTAACCAAACTTGCCACACAC 59.870 43.478 0.00 0.00 0.00 3.82
1981 2995 3.357203 TCTTAACCAAACTTGCCACACA 58.643 40.909 0.00 0.00 0.00 3.72
1982 2996 4.584327 ATCTTAACCAAACTTGCCACAC 57.416 40.909 0.00 0.00 0.00 3.82
1984 2998 4.765339 AGGTATCTTAACCAAACTTGCCAC 59.235 41.667 0.00 0.00 42.40 5.01
1985 2999 4.993028 AGGTATCTTAACCAAACTTGCCA 58.007 39.130 0.00 0.00 42.40 4.92
1986 3000 5.977489 AAGGTATCTTAACCAAACTTGCC 57.023 39.130 0.00 0.00 42.40 4.52
1988 3002 8.021396 GCTACAAAGGTATCTTAACCAAACTTG 58.979 37.037 0.00 0.00 42.40 3.16
1989 3003 7.722285 TGCTACAAAGGTATCTTAACCAAACTT 59.278 33.333 0.00 0.00 42.40 2.66
1990 3004 7.174426 GTGCTACAAAGGTATCTTAACCAAACT 59.826 37.037 0.00 0.00 42.40 2.66
1992 3006 6.999272 TGTGCTACAAAGGTATCTTAACCAAA 59.001 34.615 0.00 0.00 42.40 3.28
1993 3007 6.535540 TGTGCTACAAAGGTATCTTAACCAA 58.464 36.000 0.00 0.00 42.40 3.67
1994 3008 6.014070 TCTGTGCTACAAAGGTATCTTAACCA 60.014 38.462 0.00 0.00 42.40 3.67
1995 3009 6.403878 TCTGTGCTACAAAGGTATCTTAACC 58.596 40.000 0.00 0.00 40.06 2.85
1996 3010 8.494016 AATCTGTGCTACAAAGGTATCTTAAC 57.506 34.615 0.00 0.00 32.01 2.01
1997 3011 8.318412 TGAATCTGTGCTACAAAGGTATCTTAA 58.682 33.333 0.00 0.00 32.01 1.85
1998 3012 7.847096 TGAATCTGTGCTACAAAGGTATCTTA 58.153 34.615 0.00 0.00 32.01 2.10
1999 3013 6.711277 TGAATCTGTGCTACAAAGGTATCTT 58.289 36.000 0.00 0.00 34.07 2.40
2000 3014 6.299805 TGAATCTGTGCTACAAAGGTATCT 57.700 37.500 0.00 0.00 0.00 1.98
2001 3015 6.985188 TTGAATCTGTGCTACAAAGGTATC 57.015 37.500 0.00 0.00 0.00 2.24
2002 3016 7.067494 GGATTTGAATCTGTGCTACAAAGGTAT 59.933 37.037 3.94 0.00 34.73 2.73
2003 3017 6.374333 GGATTTGAATCTGTGCTACAAAGGTA 59.626 38.462 3.94 0.00 34.73 3.08
2004 3018 5.183904 GGATTTGAATCTGTGCTACAAAGGT 59.816 40.000 3.94 0.00 34.73 3.50
2005 3019 5.183713 TGGATTTGAATCTGTGCTACAAAGG 59.816 40.000 3.94 0.00 34.73 3.11
2006 3020 6.258230 TGGATTTGAATCTGTGCTACAAAG 57.742 37.500 3.94 0.00 34.73 2.77
2007 3021 6.647334 TTGGATTTGAATCTGTGCTACAAA 57.353 33.333 3.94 0.00 35.73 2.83
2008 3022 5.335897 GCTTGGATTTGAATCTGTGCTACAA 60.336 40.000 3.94 0.00 35.73 2.41
2009 3023 4.156556 GCTTGGATTTGAATCTGTGCTACA 59.843 41.667 3.94 0.00 35.73 2.74
2010 3024 4.397417 AGCTTGGATTTGAATCTGTGCTAC 59.603 41.667 12.36 0.00 34.76 3.58
2011 3025 4.592942 AGCTTGGATTTGAATCTGTGCTA 58.407 39.130 12.36 0.00 34.76 3.49
2012 3026 3.428532 AGCTTGGATTTGAATCTGTGCT 58.571 40.909 3.94 7.53 35.73 4.40
2013 3027 3.863142 AGCTTGGATTTGAATCTGTGC 57.137 42.857 3.94 5.77 35.73 4.57
2028 3042 2.278330 GGCCCCTCAACCAAGCTTG 61.278 63.158 19.93 19.93 0.00 4.01
2029 3043 2.023760 AAGGCCCCTCAACCAAGCTT 62.024 55.000 0.00 0.00 0.00 3.74
2037 3051 0.850100 TGTTGAGAAAGGCCCCTCAA 59.150 50.000 21.80 21.80 44.38 3.02
2040 3054 1.073199 CGTGTTGAGAAAGGCCCCT 59.927 57.895 0.00 0.00 0.00 4.79
2042 3056 1.244019 ATGCGTGTTGAGAAAGGCCC 61.244 55.000 0.00 0.00 0.00 5.80
2043 3057 1.448985 TATGCGTGTTGAGAAAGGCC 58.551 50.000 0.00 0.00 0.00 5.19
2049 3063 4.937201 AGTATCCATATGCGTGTTGAGA 57.063 40.909 0.00 0.00 0.00 3.27
2050 3064 6.868339 TGATTAGTATCCATATGCGTGTTGAG 59.132 38.462 0.00 0.00 0.00 3.02
2051 3065 6.754193 TGATTAGTATCCATATGCGTGTTGA 58.246 36.000 0.00 0.00 0.00 3.18
2052 3066 7.331687 TGATGATTAGTATCCATATGCGTGTTG 59.668 37.037 0.00 0.00 0.00 3.33
2054 3068 6.935167 TGATGATTAGTATCCATATGCGTGT 58.065 36.000 0.00 0.00 0.00 4.49
2055 3069 8.972349 GTATGATGATTAGTATCCATATGCGTG 58.028 37.037 0.00 0.00 0.00 5.34
2056 3070 8.144478 GGTATGATGATTAGTATCCATATGCGT 58.856 37.037 0.00 0.00 0.00 5.24
2057 3071 8.143835 TGGTATGATGATTAGTATCCATATGCG 58.856 37.037 0.00 0.00 0.00 4.73
2058 3072 9.265901 GTGGTATGATGATTAGTATCCATATGC 57.734 37.037 0.00 0.00 0.00 3.14
2059 3073 9.468532 CGTGGTATGATGATTAGTATCCATATG 57.531 37.037 0.00 0.00 0.00 1.78
2060 3074 9.201989 ACGTGGTATGATGATTAGTATCCATAT 57.798 33.333 0.00 0.00 0.00 1.78
2061 3075 8.589701 ACGTGGTATGATGATTAGTATCCATA 57.410 34.615 0.00 0.00 0.00 2.74
2062 3076 7.178451 TGACGTGGTATGATGATTAGTATCCAT 59.822 37.037 0.00 0.00 0.00 3.41
2064 3078 6.920817 TGACGTGGTATGATGATTAGTATCC 58.079 40.000 0.00 0.00 0.00 2.59
2065 3079 6.528423 GCTGACGTGGTATGATGATTAGTATC 59.472 42.308 0.00 0.00 0.00 2.24
2067 3081 5.278808 GGCTGACGTGGTATGATGATTAGTA 60.279 44.000 0.00 0.00 0.00 1.82
2068 3082 4.501571 GGCTGACGTGGTATGATGATTAGT 60.502 45.833 0.00 0.00 0.00 2.24
2069 3083 3.990469 GGCTGACGTGGTATGATGATTAG 59.010 47.826 0.00 0.00 0.00 1.73
2070 3084 3.386402 TGGCTGACGTGGTATGATGATTA 59.614 43.478 0.00 0.00 0.00 1.75
2071 3085 2.170397 TGGCTGACGTGGTATGATGATT 59.830 45.455 0.00 0.00 0.00 2.57
2085 3099 3.567478 AATCTTCACCCTATGGCTGAC 57.433 47.619 0.00 0.00 33.59 3.51
2129 3143 7.160049 AGCTCTCATCGATTATTGATCACAAT 58.840 34.615 0.00 0.00 46.64 2.71
2144 3158 3.820467 AGACCTCATAGAAGCTCTCATCG 59.180 47.826 0.00 0.00 0.00 3.84
2145 3159 4.559300 GCAGACCTCATAGAAGCTCTCATC 60.559 50.000 0.00 0.00 0.00 2.92
2152 3166 2.977772 ACTGCAGACCTCATAGAAGC 57.022 50.000 23.35 0.00 0.00 3.86
2205 3270 4.141824 TGTTTCCTTTGCTAAAAACCAGGG 60.142 41.667 5.96 0.00 32.04 4.45
2206 3271 5.017294 TGTTTCCTTTGCTAAAAACCAGG 57.983 39.130 5.96 0.00 32.04 4.45
2279 3363 4.700268 TGCGATACATGTGCATCTTTTT 57.300 36.364 9.11 0.00 32.86 1.94
2280 3364 4.700268 TTGCGATACATGTGCATCTTTT 57.300 36.364 9.11 0.00 38.60 2.27
2281 3365 4.700268 TTTGCGATACATGTGCATCTTT 57.300 36.364 9.11 0.00 38.60 2.52
2282 3366 4.906065 ATTTGCGATACATGTGCATCTT 57.094 36.364 9.11 0.00 38.60 2.40
2283 3367 5.049886 CAGTATTTGCGATACATGTGCATCT 60.050 40.000 9.11 3.06 38.60 2.90
2284 3368 5.050159 TCAGTATTTGCGATACATGTGCATC 60.050 40.000 9.11 3.42 38.60 3.91
2285 3369 4.815846 TCAGTATTTGCGATACATGTGCAT 59.184 37.500 9.11 0.00 38.60 3.96
2303 3416 6.384015 ACATAGGACACCAATCAATCTCAGTA 59.616 38.462 0.00 0.00 0.00 2.74
2322 3450 5.009631 TCCAACAAAATGGAGTGACATAGG 58.990 41.667 0.00 0.00 44.52 2.57
2384 3513 8.090250 TGCGTATTAAACTTGTAGTTGTGATT 57.910 30.769 0.00 0.00 38.66 2.57
2385 3514 7.623506 GCTGCGTATTAAACTTGTAGTTGTGAT 60.624 37.037 0.00 0.00 38.66 3.06
2386 3515 6.347079 GCTGCGTATTAAACTTGTAGTTGTGA 60.347 38.462 0.00 0.00 38.66 3.58
2387 3516 5.788531 GCTGCGTATTAAACTTGTAGTTGTG 59.211 40.000 0.00 0.00 38.66 3.33
2388 3517 5.467399 TGCTGCGTATTAAACTTGTAGTTGT 59.533 36.000 0.00 0.00 38.66 3.32
2389 3518 5.922546 TGCTGCGTATTAAACTTGTAGTTG 58.077 37.500 0.00 0.00 38.66 3.16
2390 3519 5.929992 TCTGCTGCGTATTAAACTTGTAGTT 59.070 36.000 0.00 0.00 40.80 2.24
2391 3520 5.475719 TCTGCTGCGTATTAAACTTGTAGT 58.524 37.500 0.00 0.00 0.00 2.73
2405 3534 2.679837 CAACATCCTAAATCTGCTGCGT 59.320 45.455 0.00 0.00 0.00 5.24
2452 3603 4.482386 CAATGCATTTCACAAGACAGGAG 58.518 43.478 9.83 0.00 0.00 3.69
2453 3604 3.305539 GCAATGCATTTCACAAGACAGGA 60.306 43.478 9.83 0.00 0.00 3.86
2459 3610 4.319190 CCAAGTTGCAATGCATTTCACAAG 60.319 41.667 11.45 0.00 38.76 3.16
2478 3630 6.937436 ACAACTGACTTAAACTAACCCAAG 57.063 37.500 0.00 0.00 0.00 3.61
2512 3680 7.488792 GCATCACACAATACATATTTCAAAGCA 59.511 33.333 0.00 0.00 0.00 3.91
2573 4514 5.932303 AGTTCGTTACAGAAGTGCAACATAT 59.068 36.000 0.00 0.00 41.43 1.78
2574 4515 5.294356 AGTTCGTTACAGAAGTGCAACATA 58.706 37.500 0.00 0.00 41.43 2.29
2576 4517 3.527533 AGTTCGTTACAGAAGTGCAACA 58.472 40.909 0.00 0.00 41.43 3.33
2577 4518 4.743644 AGTAGTTCGTTACAGAAGTGCAAC 59.256 41.667 12.12 0.00 38.22 4.17
2601 4542 2.848751 GCTTCGCATCTGAAGAAATCGC 60.849 50.000 7.63 0.00 46.64 4.58
2634 4577 3.005554 CAGACGCATCACTGAATTTCCT 58.994 45.455 0.00 0.00 36.38 3.36
2666 4609 4.159135 ACTTTGAAAGGCCATAGCTTCATG 59.841 41.667 5.01 0.00 34.32 3.07
2669 4612 3.181506 CGACTTTGAAAGGCCATAGCTTC 60.182 47.826 5.01 0.00 39.73 3.86
2734 4677 1.710244 TGAATTTCTTCTCCTGGCCCA 59.290 47.619 0.00 0.00 32.29 5.36
2739 4682 2.417933 CTGCCGTGAATTTCTTCTCCTG 59.582 50.000 0.00 0.00 32.29 3.86
2750 4693 2.102252 GGAGATCTCTTCTGCCGTGAAT 59.898 50.000 21.81 0.00 36.84 2.57
2835 4778 2.646175 CCGGGACAGTGATGACGGT 61.646 63.158 0.00 0.00 36.78 4.83
2922 4865 2.101415 CAGAGGGCTCGTTGATGATACA 59.899 50.000 0.00 0.00 34.09 2.29
2924 4867 1.069204 GCAGAGGGCTCGTTGATGATA 59.931 52.381 0.00 0.00 40.25 2.15
3204 5177 1.248486 CTCTCACAGGTCGTCCTCAA 58.752 55.000 0.00 0.00 43.07 3.02
3213 5186 1.152030 TCTTGGCCCTCTCACAGGT 60.152 57.895 0.00 0.00 41.51 4.00
3634 5607 1.908619 ACACTCATGATACCAGGCACA 59.091 47.619 0.00 0.00 0.00 4.57
3637 5634 1.134280 AGCACACTCATGATACCAGGC 60.134 52.381 0.00 0.00 0.00 4.85
3709 5724 2.223377 GCTCGTCTGGTTGTCGAATTTT 59.777 45.455 0.00 0.00 35.99 1.82
3792 5807 2.896428 GATGCCGGTAAGCGCAAACG 62.896 60.000 11.47 12.19 38.75 3.60
3796 5811 2.817834 GTGATGCCGGTAAGCGCA 60.818 61.111 11.47 0.00 39.79 6.09
3802 5817 3.792736 GCTGGGGTGATGCCGGTA 61.793 66.667 1.90 0.00 38.44 4.02
3839 5854 6.384258 TTCGACTTCAATGGTTTCAATCAA 57.616 33.333 0.00 0.00 0.00 2.57
3841 5856 4.853743 GCTTCGACTTCAATGGTTTCAATC 59.146 41.667 0.00 0.00 0.00 2.67
3865 5880 1.880027 GTCACTTTGAGGATGCCGTTT 59.120 47.619 0.00 0.00 0.00 3.60
3877 5892 2.027625 GTCCTCCGCCGTCACTTTG 61.028 63.158 0.00 0.00 0.00 2.77
3880 5895 2.680352 ATGTCCTCCGCCGTCACT 60.680 61.111 0.00 0.00 0.00 3.41
3898 5913 3.378112 TGCTCTTCTTGTTTCCAGTTGTG 59.622 43.478 0.00 0.00 0.00 3.33
3934 5955 4.785453 CTCAGCCCGCCCTTGTCC 62.785 72.222 0.00 0.00 0.00 4.02
4183 6207 4.399303 GCTTCCTGCTTTATTTGCTTCCTA 59.601 41.667 0.00 0.00 38.95 2.94
4253 6282 3.064545 GCAGTAGGATTGCAGAACACATC 59.935 47.826 0.00 0.00 41.17 3.06
4307 6337 6.963049 AAACGATTAGTCAATGTCAGTACC 57.037 37.500 0.00 0.00 0.00 3.34
4384 6425 6.708885 TTATAGGACGGAGGGAGTAGAATA 57.291 41.667 0.00 0.00 0.00 1.75
4389 6430 8.397951 TCTTATATTATAGGACGGAGGGAGTA 57.602 38.462 0.00 0.00 0.00 2.59
4390 6431 7.281366 TCTTATATTATAGGACGGAGGGAGT 57.719 40.000 0.00 0.00 0.00 3.85
4391 6432 6.263617 GCTCTTATATTATAGGACGGAGGGAG 59.736 46.154 0.00 0.00 0.00 4.30
4392 6433 6.127793 GCTCTTATATTATAGGACGGAGGGA 58.872 44.000 0.00 0.00 0.00 4.20
4393 6434 5.892119 TGCTCTTATATTATAGGACGGAGGG 59.108 44.000 0.00 0.00 0.00 4.30
4394 6435 7.589958 ATGCTCTTATATTATAGGACGGAGG 57.410 40.000 0.00 0.00 0.00 4.30
4395 6436 9.877178 AAAATGCTCTTATATTATAGGACGGAG 57.123 33.333 0.00 0.00 0.00 4.63
4401 6442 9.760660 GCGTCAAAAATGCTCTTATATTATAGG 57.239 33.333 0.00 0.00 36.91 2.57
4469 6513 7.847711 ATGGCTAATGACTAGTCTGATACTT 57.152 36.000 23.01 9.62 39.80 2.24
4533 6578 1.940883 CTCACGCGGGCCTACAGTAA 61.941 60.000 12.47 0.00 0.00 2.24
4792 8016 5.658634 TCACCTACAGTAGAAGCATCATCTT 59.341 40.000 9.38 0.00 0.00 2.40
4838 8062 8.120465 CCATATGTGTTACGGAATAGAAACAAC 58.880 37.037 1.24 0.00 33.92 3.32
4888 8124 5.616488 ATGCTTCCATTGCAATTCAAAAC 57.384 34.783 9.83 0.89 44.01 2.43
5008 8275 6.015918 ACCAATAACTTCCATGGAATGTGAA 58.984 36.000 27.20 17.27 44.81 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.