Multiple sequence alignment - TraesCS2A01G506200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G506200 chr2A 100.000 4936 0 0 1 4936 734153012 734148077 0.000000e+00 9116.0
1 TraesCS2A01G506200 chr2B 93.721 3042 121 27 1398 4412 730851644 730848646 0.000000e+00 4495.0
2 TraesCS2A01G506200 chr2B 87.500 1408 91 34 4 1385 730853053 730851705 0.000000e+00 1546.0
3 TraesCS2A01G506200 chr2B 92.308 221 12 4 4680 4900 730848404 730848189 4.800000e-80 309.0
4 TraesCS2A01G506200 chr2B 97.619 42 0 1 4896 4936 730845879 730845838 2.470000e-08 71.3
5 TraesCS2A01G506200 chr2D 94.032 2748 107 33 1699 4412 600760223 600757499 0.000000e+00 4113.0
6 TraesCS2A01G506200 chr2D 92.677 1311 64 12 2 1296 600762043 600760749 0.000000e+00 1860.0
7 TraesCS2A01G506200 chr2D 94.183 361 19 1 1339 1697 600760752 600760392 2.600000e-152 549.0
8 TraesCS2A01G506200 chr7B 79.021 143 20 6 1885 2021 246032688 246032550 6.810000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G506200 chr2A 734148077 734153012 4935 True 9116.000 9116 100.000000 1 4936 1 chr2A.!!$R1 4935
1 TraesCS2A01G506200 chr2B 730845838 730853053 7215 True 1605.325 4495 92.787000 4 4936 4 chr2B.!!$R1 4932
2 TraesCS2A01G506200 chr2D 600757499 600762043 4544 True 2174.000 4113 93.630667 2 4412 3 chr2D.!!$R1 4410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 577 0.040204 CAGGCCTGGATTGGGTTCTT 59.960 55.0 26.14 0.0 0.00 2.52 F
1339 1424 0.039764 TCGACACCACCTGGAGATCT 59.960 55.0 0.00 0.0 38.94 2.75 F
1752 2064 0.958091 TTCTGAATGCCACGTTTGGG 59.042 50.0 0.00 0.0 44.15 4.12 F
3349 3672 0.307453 TATTTGTCCGCGCATCATGC 59.693 50.0 8.75 0.0 40.69 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1748 1.066716 GTTGGACCAGTGTATACCGCA 60.067 52.381 0.00 0.0 0.00 5.69 R
3338 3661 0.659417 GAAATCAGGCATGATGCGCG 60.659 55.000 15.62 0.0 45.67 6.86 R
3393 3716 3.670055 CGACAACACAAAATGGAATCTGC 59.330 43.478 0.00 0.0 0.00 4.26 R
4722 5112 0.246635 ACTTGCTATCGTGTTCGCCT 59.753 50.000 0.00 0.0 36.96 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 1.291272 GTCGTCGCCCAGGTTAGTT 59.709 57.895 0.00 0.00 0.00 2.24
122 123 1.005394 CGTCGCCCAGGTTAGTTGT 60.005 57.895 0.00 0.00 0.00 3.32
125 126 0.250553 TCGCCCAGGTTAGTTGTTGG 60.251 55.000 0.00 0.00 0.00 3.77
126 127 1.862602 CGCCCAGGTTAGTTGTTGGC 61.863 60.000 0.00 0.00 0.00 4.52
128 129 1.241315 CCCAGGTTAGTTGTTGGCGG 61.241 60.000 0.00 0.00 0.00 6.13
198 203 1.708027 GGATTTCGGTCGACGCAAG 59.292 57.895 9.92 1.03 43.86 4.01
256 264 1.746322 TTCGTCGTGGTGCTGGGTTA 61.746 55.000 0.00 0.00 0.00 2.85
257 265 1.736645 CGTCGTGGTGCTGGGTTAG 60.737 63.158 0.00 0.00 0.00 2.34
258 266 1.370064 GTCGTGGTGCTGGGTTAGT 59.630 57.895 0.00 0.00 0.00 2.24
259 267 0.949105 GTCGTGGTGCTGGGTTAGTG 60.949 60.000 0.00 0.00 0.00 2.74
260 268 2.325082 CGTGGTGCTGGGTTAGTGC 61.325 63.158 0.00 0.00 0.00 4.40
261 269 1.971695 GTGGTGCTGGGTTAGTGCC 60.972 63.158 0.00 0.00 0.00 5.01
262 270 2.153401 TGGTGCTGGGTTAGTGCCT 61.153 57.895 0.00 0.00 0.00 4.75
263 271 1.074951 GGTGCTGGGTTAGTGCCTT 59.925 57.895 0.00 0.00 0.00 4.35
335 343 1.129058 CAATTACCCGCTACTCCCCT 58.871 55.000 0.00 0.00 0.00 4.79
550 577 0.040204 CAGGCCTGGATTGGGTTCTT 59.960 55.000 26.14 0.00 0.00 2.52
551 578 0.332972 AGGCCTGGATTGGGTTCTTC 59.667 55.000 3.11 0.00 0.00 2.87
552 579 0.684479 GGCCTGGATTGGGTTCTTCC 60.684 60.000 0.00 0.00 0.00 3.46
578 608 2.353323 CGTAGGTAAGGGAAAACAGCC 58.647 52.381 0.00 0.00 0.00 4.85
589 619 2.297033 GGAAAACAGCCAGCTTGATTCA 59.703 45.455 0.00 0.00 0.00 2.57
596 626 1.247567 CCAGCTTGATTCAACGGGTT 58.752 50.000 0.00 0.00 0.00 4.11
608 638 2.047560 CGGGTTGTTCCGGGAGTC 60.048 66.667 0.00 0.00 45.78 3.36
636 666 1.405463 GATTGATTCCTCGGTTTGCCC 59.595 52.381 0.00 0.00 0.00 5.36
639 669 1.657751 GATTCCTCGGTTTGCCCTGC 61.658 60.000 0.00 0.00 0.00 4.85
707 737 3.654020 GCCGCCGATCTGATTGCC 61.654 66.667 0.00 0.00 0.00 4.52
710 740 4.005472 GCCGATCTGATTGCCGCG 62.005 66.667 0.00 0.00 0.00 6.46
740 770 5.167121 CCTGCTAATCCGATCATAGTTCAG 58.833 45.833 0.00 0.00 0.00 3.02
873 907 2.547007 CCAAACAAAATCGGTGAACCCC 60.547 50.000 0.00 0.00 0.00 4.95
920 954 1.001706 TGACGCGGAATAGGAATCGAG 60.002 52.381 12.47 0.00 0.00 4.04
924 958 2.052157 GCGGAATAGGAATCGAGTTCG 58.948 52.381 0.00 0.00 37.73 3.95
931 968 1.084370 GGAATCGAGTTCGCACCTGG 61.084 60.000 0.00 0.00 37.73 4.45
978 1017 5.627172 GCAGTATTGTTTGCTCACGAATAA 58.373 37.500 0.00 0.00 37.35 1.40
1035 1074 0.761802 AGATCGAGATGGGGGCTTTC 59.238 55.000 0.00 0.00 0.00 2.62
1107 1146 1.968540 GTCCTGGAGCTTGCACACC 60.969 63.158 0.00 0.00 0.00 4.16
1110 1149 2.203337 TGGAGCTTGCACACCACC 60.203 61.111 0.00 0.00 0.00 4.61
1165 1204 2.206576 ATTCACCTCCAAGCTCAACC 57.793 50.000 0.00 0.00 0.00 3.77
1170 1209 0.676151 CCTCCAAGCTCAACCTGCTC 60.676 60.000 0.00 0.00 40.22 4.26
1213 1252 4.549680 CGATCGTTCTGTACTACACTACGG 60.550 50.000 7.03 0.00 32.10 4.02
1300 1385 6.803154 ATCACTAGTTGTAGGCTTTTTCAC 57.197 37.500 0.00 0.00 0.00 3.18
1301 1386 5.925509 TCACTAGTTGTAGGCTTTTTCACT 58.074 37.500 0.00 0.00 0.00 3.41
1302 1387 5.989777 TCACTAGTTGTAGGCTTTTTCACTC 59.010 40.000 0.00 0.00 0.00 3.51
1303 1388 5.179555 CACTAGTTGTAGGCTTTTTCACTCC 59.820 44.000 0.00 0.00 0.00 3.85
1304 1389 4.164843 AGTTGTAGGCTTTTTCACTCCA 57.835 40.909 0.00 0.00 0.00 3.86
1305 1390 4.532834 AGTTGTAGGCTTTTTCACTCCAA 58.467 39.130 0.00 0.00 0.00 3.53
1306 1391 4.338400 AGTTGTAGGCTTTTTCACTCCAAC 59.662 41.667 0.00 0.00 0.00 3.77
1307 1392 4.164843 TGTAGGCTTTTTCACTCCAACT 57.835 40.909 0.00 0.00 0.00 3.16
1308 1393 5.298989 TGTAGGCTTTTTCACTCCAACTA 57.701 39.130 0.00 0.00 0.00 2.24
1309 1394 5.686753 TGTAGGCTTTTTCACTCCAACTAA 58.313 37.500 0.00 0.00 0.00 2.24
1310 1395 6.303839 TGTAGGCTTTTTCACTCCAACTAAT 58.696 36.000 0.00 0.00 0.00 1.73
1311 1396 7.455058 TGTAGGCTTTTTCACTCCAACTAATA 58.545 34.615 0.00 0.00 0.00 0.98
1312 1397 7.940137 TGTAGGCTTTTTCACTCCAACTAATAA 59.060 33.333 0.00 0.00 0.00 1.40
1313 1398 8.957466 GTAGGCTTTTTCACTCCAACTAATAAT 58.043 33.333 0.00 0.00 0.00 1.28
1314 1399 8.422577 AGGCTTTTTCACTCCAACTAATAATT 57.577 30.769 0.00 0.00 0.00 1.40
1315 1400 8.306761 AGGCTTTTTCACTCCAACTAATAATTG 58.693 33.333 0.00 0.00 0.00 2.32
1316 1401 8.088365 GGCTTTTTCACTCCAACTAATAATTGT 58.912 33.333 0.00 0.00 0.00 2.71
1327 1412 9.701098 TCCAACTAATAATTGTATATCGACACC 57.299 33.333 0.00 0.00 0.00 4.16
1328 1413 9.483916 CCAACTAATAATTGTATATCGACACCA 57.516 33.333 0.00 0.00 0.00 4.17
1330 1415 9.485206 AACTAATAATTGTATATCGACACCACC 57.515 33.333 0.00 0.00 0.00 4.61
1331 1416 8.867097 ACTAATAATTGTATATCGACACCACCT 58.133 33.333 0.00 0.00 0.00 4.00
1332 1417 7.962964 AATAATTGTATATCGACACCACCTG 57.037 36.000 0.00 0.00 0.00 4.00
1333 1418 3.812156 TTGTATATCGACACCACCTGG 57.188 47.619 0.00 0.00 42.17 4.45
1334 1419 3.021177 TGTATATCGACACCACCTGGA 57.979 47.619 0.00 0.00 38.94 3.86
1335 1420 2.956333 TGTATATCGACACCACCTGGAG 59.044 50.000 0.00 0.00 38.94 3.86
1336 1421 2.454336 ATATCGACACCACCTGGAGA 57.546 50.000 0.00 0.00 38.94 3.71
1337 1422 2.454336 TATCGACACCACCTGGAGAT 57.546 50.000 0.00 0.92 38.94 2.75
1338 1423 1.115467 ATCGACACCACCTGGAGATC 58.885 55.000 0.00 0.00 38.94 2.75
1339 1424 0.039764 TCGACACCACCTGGAGATCT 59.960 55.000 0.00 0.00 38.94 2.75
1647 1784 4.751098 GGTCCAACACGTATGTCACTTTTA 59.249 41.667 0.00 0.00 38.45 1.52
1653 1790 6.946229 ACACGTATGTCACTTTTATCACTC 57.054 37.500 0.00 0.00 31.55 3.51
1659 1796 7.758076 CGTATGTCACTTTTATCACTCTGGTTA 59.242 37.037 0.00 0.00 0.00 2.85
1752 2064 0.958091 TTCTGAATGCCACGTTTGGG 59.042 50.000 0.00 0.00 44.15 4.12
1863 2175 5.268387 TCAAATATGCTATTGGTGGTTGGT 58.732 37.500 0.00 0.00 0.00 3.67
1978 2291 6.614906 AGGGAAATCTCTGATAGTGAACTCAT 59.385 38.462 0.00 0.00 0.00 2.90
1979 2292 6.705381 GGGAAATCTCTGATAGTGAACTCATG 59.295 42.308 0.00 0.00 0.00 3.07
2118 2431 3.758755 TCTGAGCTTGCTCTTTCAAGA 57.241 42.857 21.17 13.13 44.61 3.02
2246 2559 6.805271 CCTCAATTGTTTACTTCTTGCTGATG 59.195 38.462 5.13 0.00 0.00 3.07
2315 2628 6.512415 GCTGATGACAAACTATATTGGTGCTC 60.512 42.308 0.00 0.00 34.56 4.26
2345 2658 8.458573 TTTGGAACGCCATATGATAAACTAAT 57.541 30.769 3.65 0.00 45.46 1.73
2346 2659 9.562408 TTTGGAACGCCATATGATAAACTAATA 57.438 29.630 3.65 0.00 45.46 0.98
2347 2660 9.562408 TTGGAACGCCATATGATAAACTAATAA 57.438 29.630 3.65 0.00 45.46 1.40
2408 2721 3.130516 ACCATGCTCATCATTTGCTGAAG 59.869 43.478 0.00 0.00 37.44 3.02
2420 2733 5.538053 TCATTTGCTGAAGGTTTCACCAATA 59.462 36.000 0.00 0.00 41.95 1.90
2427 2740 7.395772 TGCTGAAGGTTTCACCAATATTATGAA 59.604 33.333 9.28 9.28 41.95 2.57
2482 2795 3.568007 CCGAGGAAGATGAAGAGGTAGAG 59.432 52.174 0.00 0.00 0.00 2.43
2801 3117 2.907910 ATCTTGAAAGCGTGCATGTC 57.092 45.000 7.93 0.00 0.00 3.06
2838 3154 5.764192 ACGGAGAGAGTACCAATATAGTGTC 59.236 44.000 0.00 0.00 0.00 3.67
2881 3197 7.710907 TGTATACTCTGCAAGGATGTAATTGAC 59.289 37.037 4.17 0.00 28.69 3.18
2925 3241 2.293677 CAGGGAGCATCTGATTCATTGC 59.706 50.000 11.73 11.73 34.36 3.56
3038 3354 9.865321 AAAGATAAGCTCGTAAGTGTTTGTATA 57.135 29.630 0.00 0.00 35.85 1.47
3050 3366 9.211485 GTAAGTGTTTGTATATGTGGTTACTGT 57.789 33.333 0.00 0.00 0.00 3.55
3051 3367 8.685838 AAGTGTTTGTATATGTGGTTACTGTT 57.314 30.769 0.00 0.00 0.00 3.16
3053 3369 7.174253 AGTGTTTGTATATGTGGTTACTGTTGG 59.826 37.037 0.00 0.00 0.00 3.77
3063 3379 4.158949 GTGGTTACTGTTGGTGTTTTTCCT 59.841 41.667 0.00 0.00 0.00 3.36
3077 3393 3.356529 TTTTCCTCCTTCAGCATCCTC 57.643 47.619 0.00 0.00 0.00 3.71
3101 3417 7.268586 TCCTAACTGTTTTTGCATTTGCTTTA 58.731 30.769 0.00 0.00 42.66 1.85
3142 3458 4.771577 ACAATAGGTGTTGCAATTGGATCA 59.228 37.500 0.59 7.11 37.01 2.92
3231 3547 4.640201 ACTGTGTGAATGTTAGCACTTGTT 59.360 37.500 0.00 0.00 36.05 2.83
3253 3569 2.047061 AGCCAAGTACAGTTCTGGTCA 58.953 47.619 4.82 0.00 0.00 4.02
3303 3626 3.884693 TCTACTGGTCTGTGTCGTTTGTA 59.115 43.478 0.00 0.00 0.00 2.41
3308 3631 4.055360 TGGTCTGTGTCGTTTGTAGATTG 58.945 43.478 0.00 0.00 0.00 2.67
3324 3647 2.776536 AGATTGCTGCTATTCCTCCACT 59.223 45.455 0.00 0.00 0.00 4.00
3329 3652 3.202097 GCTGCTATTCCTCCACTTTCTC 58.798 50.000 0.00 0.00 0.00 2.87
3331 3654 4.100189 GCTGCTATTCCTCCACTTTCTCTA 59.900 45.833 0.00 0.00 0.00 2.43
3334 3657 7.200434 TGCTATTCCTCCACTTTCTCTATTT 57.800 36.000 0.00 0.00 0.00 1.40
3338 3661 5.422214 TCCTCCACTTTCTCTATTTGTCC 57.578 43.478 0.00 0.00 0.00 4.02
3349 3672 0.307453 TATTTGTCCGCGCATCATGC 59.693 50.000 8.75 0.00 40.69 4.06
3393 3716 7.194607 ACTTGACATGTGTTCTCTGTTAATG 57.805 36.000 1.15 0.00 0.00 1.90
3495 3818 5.233988 ACTCTCTTCATAACAGTGCTTGTC 58.766 41.667 0.00 0.00 39.73 3.18
3527 3850 8.488651 TTTATGCTACAGGTAAGTTCTTAAGC 57.511 34.615 0.00 6.37 0.00 3.09
3530 3853 4.620097 GCTACAGGTAAGTTCTTAAGCGGT 60.620 45.833 0.00 0.00 0.00 5.68
3691 4015 9.282247 CTTCAGTATCATGTGCTTATTTGTTTC 57.718 33.333 0.00 0.00 0.00 2.78
3749 4073 4.640771 TCTGAAAGGACTTATGCTGGTT 57.359 40.909 0.00 0.00 0.00 3.67
3824 4148 3.428452 CCAGTAAGCACTAATTCGTCGGA 60.428 47.826 0.00 0.00 32.21 4.55
3908 4251 5.559427 TGAACATGCAAGTATTAACGCAT 57.441 34.783 0.00 0.00 45.65 4.73
3938 4282 0.863799 CAGGCGATGATGATTGACGG 59.136 55.000 0.00 0.00 0.00 4.79
3940 4284 1.202568 GCGATGATGATTGACGGCG 59.797 57.895 4.80 4.80 0.00 6.46
3949 4293 4.858680 TTGACGGCGCCACCAACA 62.859 61.111 28.98 14.99 39.03 3.33
4055 4400 2.270205 CCAGCCTGTCCGAAGCAT 59.730 61.111 0.00 0.00 0.00 3.79
4056 4401 1.377725 CCAGCCTGTCCGAAGCATT 60.378 57.895 0.00 0.00 0.00 3.56
4106 4451 0.647410 CAGATCATCGTGCGTTGGTC 59.353 55.000 7.58 7.58 0.00 4.02
4109 4454 1.899437 ATCATCGTGCGTTGGTCCCT 61.899 55.000 3.32 0.00 0.00 4.20
4118 4463 1.379527 CGTTGGTCCCTTTCATAGCC 58.620 55.000 0.00 0.00 0.00 3.93
4121 4466 2.755103 GTTGGTCCCTTTCATAGCCAAG 59.245 50.000 0.00 0.00 36.77 3.61
4166 4512 6.111768 TGAGATTTCTCTTGCGAATTAAGC 57.888 37.500 8.91 0.00 43.25 3.09
4187 4533 4.416738 GCTTTGAGGAGGGGCGCT 62.417 66.667 7.64 2.69 0.00 5.92
4351 4700 3.453424 GGTGGTTTGTTGGTTCATCAAC 58.547 45.455 0.00 0.00 45.13 3.18
4371 4724 7.066307 TCAACCATACATATGCATAGACAGT 57.934 36.000 12.79 10.14 32.40 3.55
4403 4756 2.888594 ACGTGTGAATATTGAGACGGG 58.111 47.619 24.06 3.20 0.00 5.28
4412 4765 4.654091 ATATTGAGACGGGCCAATTTTG 57.346 40.909 4.39 0.00 35.02 2.44
4413 4766 1.698506 TTGAGACGGGCCAATTTTGT 58.301 45.000 4.39 0.00 0.00 2.83
4414 4767 0.958091 TGAGACGGGCCAATTTTGTG 59.042 50.000 4.39 0.00 0.00 3.33
4416 4769 0.469144 AGACGGGCCAATTTTGTGGT 60.469 50.000 4.39 0.00 41.12 4.16
4417 4770 1.202952 AGACGGGCCAATTTTGTGGTA 60.203 47.619 4.39 0.00 41.12 3.25
4418 4771 1.822371 GACGGGCCAATTTTGTGGTAT 59.178 47.619 4.39 0.00 41.12 2.73
4420 4773 2.099405 CGGGCCAATTTTGTGGTATCT 58.901 47.619 4.39 0.00 41.12 1.98
4422 4775 3.697045 CGGGCCAATTTTGTGGTATCTTA 59.303 43.478 4.39 0.00 41.12 2.10
4423 4776 4.439563 CGGGCCAATTTTGTGGTATCTTAC 60.440 45.833 4.39 0.00 41.12 2.34
4424 4777 4.464597 GGGCCAATTTTGTGGTATCTTACA 59.535 41.667 4.39 0.00 41.12 2.41
4425 4778 5.046950 GGGCCAATTTTGTGGTATCTTACAA 60.047 40.000 4.39 0.00 41.12 2.41
4426 4779 6.459923 GGCCAATTTTGTGGTATCTTACAAA 58.540 36.000 0.00 0.00 42.96 2.83
4467 4833 3.587061 TCCTATTGTGTGTGACCTTGGAT 59.413 43.478 0.00 0.00 0.00 3.41
4470 4836 5.943416 CCTATTGTGTGTGACCTTGGATTTA 59.057 40.000 0.00 0.00 0.00 1.40
4471 4837 5.964958 ATTGTGTGTGACCTTGGATTTAG 57.035 39.130 0.00 0.00 0.00 1.85
4472 4838 3.146066 TGTGTGTGACCTTGGATTTAGC 58.854 45.455 0.00 0.00 0.00 3.09
4473 4839 2.488153 GTGTGTGACCTTGGATTTAGCC 59.512 50.000 0.00 0.00 0.00 3.93
4475 4841 1.707989 TGTGACCTTGGATTTAGCCCA 59.292 47.619 0.00 0.00 0.00 5.36
4476 4842 2.290896 TGTGACCTTGGATTTAGCCCAG 60.291 50.000 0.00 0.00 34.77 4.45
4477 4843 1.340991 TGACCTTGGATTTAGCCCAGC 60.341 52.381 0.00 0.00 34.77 4.85
4478 4844 0.033109 ACCTTGGATTTAGCCCAGCC 60.033 55.000 0.00 0.00 34.77 4.85
4479 4845 0.259938 CCTTGGATTTAGCCCAGCCT 59.740 55.000 0.00 0.00 34.77 4.58
4480 4846 1.396653 CTTGGATTTAGCCCAGCCTG 58.603 55.000 0.00 0.00 34.77 4.85
4481 4847 0.033208 TTGGATTTAGCCCAGCCTGG 60.033 55.000 2.91 2.91 37.25 4.45
4501 4867 0.604780 CCTGTGTGCCTCCAAGTGAG 60.605 60.000 0.00 0.00 41.07 3.51
4502 4868 1.227943 TGTGTGCCTCCAAGTGAGC 60.228 57.895 0.00 0.00 39.98 4.26
4503 4869 1.968540 GTGTGCCTCCAAGTGAGCC 60.969 63.158 0.00 0.00 39.98 4.70
4504 4870 2.360475 GTGCCTCCAAGTGAGCCC 60.360 66.667 0.00 0.00 39.98 5.19
4505 4871 2.853542 TGCCTCCAAGTGAGCCCA 60.854 61.111 0.00 0.00 39.98 5.36
4517 4887 1.303561 GAGCCCATGTGCTGGTCAA 60.304 57.895 7.64 0.00 44.30 3.18
4519 4889 0.625316 AGCCCATGTGCTGGTCAATA 59.375 50.000 0.41 0.00 44.30 1.90
4523 4911 3.748668 GCCCATGTGCTGGTCAATATACT 60.749 47.826 0.00 0.00 44.30 2.12
4529 4917 1.873591 GCTGGTCAATATACTTGGGCG 59.126 52.381 0.00 0.00 0.00 6.13
4622 5012 5.163437 GGGTATTAGGGTATAAGCAGGATCG 60.163 48.000 0.00 0.00 0.00 3.69
4623 5013 3.955650 TTAGGGTATAAGCAGGATCGC 57.044 47.619 0.00 0.00 0.00 4.58
4643 5033 9.045223 GGATCGCACATAAGAAATGCATATATA 57.955 33.333 0.00 0.00 39.39 0.86
4690 5080 6.601741 TTTTTGTGGATGAAGAAAATGCAC 57.398 33.333 0.00 1.61 44.12 4.57
4722 5112 3.287222 AGTTCAAAAACTGCAGGCTACA 58.713 40.909 19.93 0.00 44.13 2.74
4747 5137 4.032445 GCGAACACGATAGCAAGTTATTCA 59.968 41.667 0.00 0.00 42.67 2.57
4757 5147 4.651778 AGCAAGTTATTCAGGCTACAACA 58.348 39.130 0.00 0.00 32.09 3.33
4804 5194 3.983044 AACTCTGGTTTAGGCTACAGG 57.017 47.619 9.86 4.88 30.55 4.00
4817 5207 1.470098 GCTACAGGCAACCAGATTGTG 59.530 52.381 0.00 0.00 40.77 3.33
4818 5208 1.470098 CTACAGGCAACCAGATTGTGC 59.530 52.381 0.00 0.00 40.77 4.57
4848 5238 3.006247 GCTTCAGAAGTGAACATCCCTC 58.994 50.000 11.94 0.00 37.79 4.30
4859 5249 1.523758 ACATCCCTCGCTTCACAAAC 58.476 50.000 0.00 0.00 0.00 2.93
4874 5264 3.754323 TCACAAACTGACCGAAACTTTGT 59.246 39.130 0.00 0.00 35.85 2.83
4885 5275 2.286184 CGAAACTTTGTGAACCCAGACG 60.286 50.000 0.00 0.00 0.00 4.18
4900 5290 3.489398 CCCAGACGCAGACTACATCTAAC 60.489 52.174 0.00 0.00 35.15 2.34
4902 5292 4.380550 CCAGACGCAGACTACATCTAACAA 60.381 45.833 0.00 0.00 35.15 2.83
4903 5293 5.344066 CAGACGCAGACTACATCTAACAAT 58.656 41.667 0.00 0.00 35.15 2.71
4904 5294 5.230936 CAGACGCAGACTACATCTAACAATG 59.769 44.000 0.00 0.00 35.15 2.82
4905 5295 5.125578 AGACGCAGACTACATCTAACAATGA 59.874 40.000 0.00 0.00 35.15 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.009115 CCAAGAAGGCTCGGGGGA 61.009 66.667 0.00 0.00 0.00 4.81
5 6 4.115199 CCCAAGAAGGCTCGGGGG 62.115 72.222 5.16 2.66 37.39 5.40
116 117 1.894756 GCACCACCGCCAACAACTA 60.895 57.895 0.00 0.00 0.00 2.24
128 129 4.927782 TGACACCGCCAGCACCAC 62.928 66.667 0.00 0.00 0.00 4.16
198 203 1.133790 CACCACCGCCACTACTACTAC 59.866 57.143 0.00 0.00 0.00 2.73
260 268 3.007542 GGGGGAAGCCCACTAAGG 58.992 66.667 4.67 0.00 45.41 2.69
335 343 1.677966 ACTAAGCGAGCACGGAGGA 60.678 57.895 5.52 0.00 40.15 3.71
518 545 3.054503 GCCTGTCCAGCAGCACTG 61.055 66.667 0.00 0.00 46.77 3.66
578 608 1.608590 ACAACCCGTTGAATCAAGCTG 59.391 47.619 14.29 0.00 42.93 4.24
636 666 2.125552 TCGATTGCTCGGTGGCAG 60.126 61.111 0.00 0.00 45.10 4.85
639 669 0.598680 GGATCTCGATTGCTCGGTGG 60.599 60.000 0.00 0.00 45.10 4.61
710 740 1.883084 CGGATTAGCAGGGCACGAC 60.883 63.158 0.00 0.00 0.00 4.34
740 770 2.764572 TGGAGAGGAAGAATAACCCGAC 59.235 50.000 0.00 0.00 0.00 4.79
805 839 1.512926 CACCAGGTCAAGTTTCCGAG 58.487 55.000 0.00 0.00 0.00 4.63
807 841 1.515521 GGCACCAGGTCAAGTTTCCG 61.516 60.000 0.00 0.00 0.00 4.30
808 842 2.341452 GGCACCAGGTCAAGTTTCC 58.659 57.895 0.00 0.00 0.00 3.13
834 868 0.737367 GGAAAAATCAAGCTGCGCCC 60.737 55.000 4.18 0.00 0.00 6.13
924 958 1.115326 ACTTTCCCAAAGCCAGGTGC 61.115 55.000 0.00 0.00 42.27 5.01
931 968 3.459232 AAGAAGCAACTTTCCCAAAGC 57.541 42.857 0.00 0.00 42.27 3.51
962 999 2.550606 GGGTGTTATTCGTGAGCAAACA 59.449 45.455 0.00 0.00 0.00 2.83
963 1000 2.812011 AGGGTGTTATTCGTGAGCAAAC 59.188 45.455 0.00 0.00 0.00 2.93
1017 1056 0.469917 TGAAAGCCCCCATCTCGATC 59.530 55.000 0.00 0.00 0.00 3.69
1107 1146 2.926200 CTGCAATACTCTCTTCACGGTG 59.074 50.000 0.56 0.56 0.00 4.94
1110 1149 2.857152 GCTCTGCAATACTCTCTTCACG 59.143 50.000 0.00 0.00 0.00 4.35
1165 1204 3.612251 CCCAAAGGGCATGAGCAG 58.388 61.111 0.00 0.00 44.61 4.24
1213 1252 4.503741 ACAACACACTTACATGCCAATC 57.496 40.909 0.00 0.00 0.00 2.67
1301 1386 9.701098 GGTGTCGATATACAATTATTAGTTGGA 57.299 33.333 4.25 0.00 0.00 3.53
1302 1387 9.483916 TGGTGTCGATATACAATTATTAGTTGG 57.516 33.333 4.25 0.00 0.00 3.77
1304 1389 9.485206 GGTGGTGTCGATATACAATTATTAGTT 57.515 33.333 0.00 0.00 0.00 2.24
1305 1390 8.867097 AGGTGGTGTCGATATACAATTATTAGT 58.133 33.333 0.00 0.00 0.00 2.24
1306 1391 9.140286 CAGGTGGTGTCGATATACAATTATTAG 57.860 37.037 0.00 0.00 0.00 1.73
1307 1392 8.092068 CCAGGTGGTGTCGATATACAATTATTA 58.908 37.037 0.00 0.00 0.00 0.98
1308 1393 6.934645 CCAGGTGGTGTCGATATACAATTATT 59.065 38.462 0.00 0.00 0.00 1.40
1309 1394 6.269077 TCCAGGTGGTGTCGATATACAATTAT 59.731 38.462 0.00 0.00 36.34 1.28
1310 1395 5.599242 TCCAGGTGGTGTCGATATACAATTA 59.401 40.000 0.00 0.00 36.34 1.40
1311 1396 4.407621 TCCAGGTGGTGTCGATATACAATT 59.592 41.667 0.00 0.00 36.34 2.32
1312 1397 3.964688 TCCAGGTGGTGTCGATATACAAT 59.035 43.478 0.00 0.00 36.34 2.71
1313 1398 3.367321 TCCAGGTGGTGTCGATATACAA 58.633 45.455 0.00 0.00 36.34 2.41
1314 1399 2.956333 CTCCAGGTGGTGTCGATATACA 59.044 50.000 0.00 0.00 36.34 2.29
1315 1400 3.220110 TCTCCAGGTGGTGTCGATATAC 58.780 50.000 0.00 0.00 36.34 1.47
1316 1401 3.588210 TCTCCAGGTGGTGTCGATATA 57.412 47.619 0.00 0.00 36.34 0.86
1317 1402 2.454336 TCTCCAGGTGGTGTCGATAT 57.546 50.000 0.00 0.00 36.34 1.63
1318 1403 2.091830 AGATCTCCAGGTGGTGTCGATA 60.092 50.000 0.00 0.00 36.34 2.92
1319 1404 1.115467 GATCTCCAGGTGGTGTCGAT 58.885 55.000 0.00 0.00 36.34 3.59
1320 1405 0.039764 AGATCTCCAGGTGGTGTCGA 59.960 55.000 0.00 0.00 36.34 4.20
1321 1406 0.898320 AAGATCTCCAGGTGGTGTCG 59.102 55.000 0.00 0.00 36.34 4.35
1322 1407 2.616510 CCAAAGATCTCCAGGTGGTGTC 60.617 54.545 0.00 0.00 36.34 3.67
1323 1408 1.352352 CCAAAGATCTCCAGGTGGTGT 59.648 52.381 0.00 0.00 36.34 4.16
1324 1409 1.952367 GCCAAAGATCTCCAGGTGGTG 60.952 57.143 0.00 0.00 36.34 4.17
1325 1410 0.329596 GCCAAAGATCTCCAGGTGGT 59.670 55.000 0.00 0.00 36.34 4.16
1326 1411 0.329261 TGCCAAAGATCTCCAGGTGG 59.671 55.000 0.00 0.44 0.00 4.61
1327 1412 2.089980 CTTGCCAAAGATCTCCAGGTG 58.910 52.381 0.00 0.00 35.19 4.00
1328 1413 1.988107 TCTTGCCAAAGATCTCCAGGT 59.012 47.619 0.00 0.00 37.51 4.00
1329 1414 2.641305 CTCTTGCCAAAGATCTCCAGG 58.359 52.381 0.00 0.00 41.60 4.45
1330 1415 2.015587 GCTCTTGCCAAAGATCTCCAG 58.984 52.381 0.00 0.00 41.60 3.86
1331 1416 1.632409 AGCTCTTGCCAAAGATCTCCA 59.368 47.619 0.00 0.00 41.60 3.86
1332 1417 2.015587 CAGCTCTTGCCAAAGATCTCC 58.984 52.381 0.00 0.00 41.60 3.71
1333 1418 2.983229 TCAGCTCTTGCCAAAGATCTC 58.017 47.619 0.00 0.00 41.60 2.75
1334 1419 3.054582 TCATCAGCTCTTGCCAAAGATCT 60.055 43.478 0.00 0.00 41.60 2.75
1335 1420 3.276857 TCATCAGCTCTTGCCAAAGATC 58.723 45.455 0.00 0.00 41.60 2.75
1336 1421 3.361281 TCATCAGCTCTTGCCAAAGAT 57.639 42.857 0.00 0.00 41.60 2.40
1337 1422 2.865119 TCATCAGCTCTTGCCAAAGA 57.135 45.000 0.00 0.00 40.20 2.52
1338 1423 3.280295 AGATCATCAGCTCTTGCCAAAG 58.720 45.455 0.00 0.00 40.80 2.77
1339 1424 3.361281 AGATCATCAGCTCTTGCCAAA 57.639 42.857 0.00 0.00 40.80 3.28
1386 1477 3.690139 TGCCGTTGAACTACTGAACAAAA 59.310 39.130 0.00 0.00 0.00 2.44
1611 1748 1.066716 GTTGGACCAGTGTATACCGCA 60.067 52.381 0.00 0.00 0.00 5.69
1647 1784 8.375493 TCCAGTAAGTTATTAACCAGAGTGAT 57.625 34.615 2.92 0.00 0.00 3.06
1752 2064 7.430992 TGCTATTATCATCTCAGTTGCATTC 57.569 36.000 0.00 0.00 0.00 2.67
1863 2175 1.136695 CCACCAGCAAAGAAAGCACAA 59.863 47.619 0.00 0.00 0.00 3.33
1978 2291 6.272318 CAGTTGCCTGTTGTAAAGAAAATCA 58.728 36.000 0.00 0.00 33.80 2.57
1979 2292 5.175673 GCAGTTGCCTGTTGTAAAGAAAATC 59.824 40.000 0.00 0.00 41.02 2.17
2118 2431 6.701841 CCACGAGCATAATACAACTACTGAAT 59.298 38.462 0.00 0.00 0.00 2.57
2246 2559 2.522836 ATCAGAGCGATGGTCATGTC 57.477 50.000 0.00 0.00 31.20 3.06
2420 2733 6.335777 GCACTTCTTCCTGCAATTTCATAAT 58.664 36.000 0.00 0.00 33.31 1.28
2427 2740 2.299326 AGGCACTTCTTCCTGCAATT 57.701 45.000 0.00 0.00 34.90 2.32
2482 2795 3.710209 ATAGCCTCCCACATGCTAATC 57.290 47.619 0.00 0.00 40.65 1.75
2654 2969 8.480643 ACGGATTTTCTTAAGTCATCAACTAG 57.519 34.615 1.63 0.00 37.17 2.57
2668 2983 8.977505 CACATTATCAACAAAACGGATTTTCTT 58.022 29.630 0.00 0.00 35.79 2.52
2748 3063 9.337396 TCACCATCAATTAGACCAATAATGTAC 57.663 33.333 0.00 0.00 0.00 2.90
2801 3117 5.665459 ACTCTCTCCGTTCCAATTGATAAG 58.335 41.667 7.12 0.00 0.00 1.73
2867 3183 6.650390 GCAAAACAATGGTCAATTACATCCTT 59.350 34.615 0.00 0.00 0.00 3.36
2881 3197 3.615496 GCAGCAATAGAGCAAAACAATGG 59.385 43.478 0.00 0.00 36.85 3.16
2925 3241 3.941483 CTGATAAAAGCCACTGGTAGGTG 59.059 47.826 0.00 0.00 37.00 4.00
3008 3324 7.527084 AACACTTACGAGCTTATCTTTCATC 57.473 36.000 0.00 0.00 0.00 2.92
3038 3354 5.394773 GGAAAAACACCAACAGTAACCACAT 60.395 40.000 0.00 0.00 0.00 3.21
3039 3355 4.082136 GGAAAAACACCAACAGTAACCACA 60.082 41.667 0.00 0.00 0.00 4.17
3050 3366 2.693074 GCTGAAGGAGGAAAAACACCAA 59.307 45.455 0.00 0.00 0.00 3.67
3051 3367 2.306847 GCTGAAGGAGGAAAAACACCA 58.693 47.619 0.00 0.00 0.00 4.17
3053 3369 3.057245 GGATGCTGAAGGAGGAAAAACAC 60.057 47.826 0.00 0.00 0.00 3.32
3063 3379 2.768527 CAGTTAGGAGGATGCTGAAGGA 59.231 50.000 0.00 0.00 37.36 3.36
3077 3393 5.989551 AAGCAAATGCAAAAACAGTTAGG 57.010 34.783 8.28 0.00 45.16 2.69
3101 3417 4.665833 TTGTTATGTCCTATAGCAGCGT 57.334 40.909 0.00 0.00 0.00 5.07
3142 3458 6.260377 CACAAACATTGATATCTGCGTTGAT 58.740 36.000 3.98 0.00 0.00 2.57
3231 3547 2.037251 GACCAGAACTGTACTTGGCTGA 59.963 50.000 0.00 0.00 0.00 4.26
3303 3626 2.776536 AGTGGAGGAATAGCAGCAATCT 59.223 45.455 0.00 0.00 0.00 2.40
3308 3631 3.118445 AGAGAAAGTGGAGGAATAGCAGC 60.118 47.826 0.00 0.00 0.00 5.25
3324 3647 2.087501 TGCGCGGACAAATAGAGAAA 57.912 45.000 8.83 0.00 0.00 2.52
3329 3652 1.661178 GCATGATGCGCGGACAAATAG 60.661 52.381 8.83 0.00 31.71 1.73
3331 3654 1.064621 GCATGATGCGCGGACAAAT 59.935 52.632 8.83 0.00 31.71 2.32
3334 3657 4.471908 AGGCATGATGCGCGGACA 62.472 61.111 11.75 6.81 46.21 4.02
3338 3661 0.659417 GAAATCAGGCATGATGCGCG 60.659 55.000 15.62 0.00 45.67 6.86
3393 3716 3.670055 CGACAACACAAAATGGAATCTGC 59.330 43.478 0.00 0.00 0.00 4.26
3749 4073 6.049149 GGCAGCAACTATTAGATAACACAGA 58.951 40.000 0.00 0.00 0.00 3.41
3849 4173 4.447054 GCAACTGAACTATCTCGATCATGG 59.553 45.833 0.00 0.00 0.00 3.66
3856 4180 1.929836 GGCAGCAACTGAACTATCTCG 59.070 52.381 0.00 0.00 32.44 4.04
3908 4251 0.108472 CATCGCCTGCAAGAGAGTCA 60.108 55.000 0.00 0.00 34.07 3.41
3938 4282 2.353030 GTTCGTTGTTGGTGGCGC 60.353 61.111 0.00 0.00 0.00 6.53
3940 4284 0.248458 CAGTGTTCGTTGTTGGTGGC 60.248 55.000 0.00 0.00 0.00 5.01
3949 4293 6.514947 TGGTACAGTAATTACAGTGTTCGTT 58.485 36.000 20.39 0.00 34.03 3.85
4055 4400 5.168569 GTGTCATCGTTTCAGTCAGGATAA 58.831 41.667 0.00 0.00 0.00 1.75
4056 4401 4.674362 CGTGTCATCGTTTCAGTCAGGATA 60.674 45.833 0.00 0.00 0.00 2.59
4106 4451 0.743097 GCAGCTTGGCTATGAAAGGG 59.257 55.000 0.00 0.00 36.40 3.95
4109 4454 0.813184 GCAGCAGCTTGGCTATGAAA 59.187 50.000 0.00 0.00 43.68 2.69
4118 4463 1.315257 ATTAACCCCGCAGCAGCTTG 61.315 55.000 0.00 0.00 39.10 4.01
4121 4466 2.481471 GGATTAACCCCGCAGCAGC 61.481 63.158 0.00 0.00 37.42 5.25
4133 4478 6.094048 CGCAAGAGAAATCTCAAAGGGATTAA 59.906 38.462 12.65 0.00 45.21 1.40
4166 4512 1.746991 GCCCCTCCTCAAAGCTTCG 60.747 63.158 0.00 0.00 0.00 3.79
4301 4650 6.663734 AGAAGAAGAAAAACAGAGGAAGGAA 58.336 36.000 0.00 0.00 0.00 3.36
4302 4651 6.253946 AGAAGAAGAAAAACAGAGGAAGGA 57.746 37.500 0.00 0.00 0.00 3.36
4303 4652 7.120432 CCATAGAAGAAGAAAAACAGAGGAAGG 59.880 40.741 0.00 0.00 0.00 3.46
4311 4660 5.076873 CCACCCCATAGAAGAAGAAAAACA 58.923 41.667 0.00 0.00 0.00 2.83
4351 4700 6.810676 GTCTGACTGTCTATGCATATGTATGG 59.189 42.308 15.72 12.98 34.32 2.74
4403 4756 8.546597 AATTTGTAAGATACCACAAAATTGGC 57.453 30.769 4.22 0.00 45.05 4.52
4442 4808 4.766891 CCAAGGTCACACACAATAGGAAAT 59.233 41.667 0.00 0.00 0.00 2.17
4443 4809 4.141287 CCAAGGTCACACACAATAGGAAA 58.859 43.478 0.00 0.00 0.00 3.13
4481 4847 2.113986 ACTTGGAGGCACACAGGC 59.886 61.111 0.00 0.00 44.61 4.85
4492 4858 1.303561 GCACATGGGCTCACTTGGA 60.304 57.895 14.19 0.00 0.00 3.53
4495 4861 1.303888 CCAGCACATGGGCTCACTT 60.304 57.895 22.48 0.00 46.36 3.16
4504 4870 4.276678 CCCAAGTATATTGACCAGCACATG 59.723 45.833 0.00 0.00 0.00 3.21
4505 4871 4.464008 CCCAAGTATATTGACCAGCACAT 58.536 43.478 0.00 0.00 0.00 3.21
4565 4955 1.278302 TGGGCTGCTGGCTAATACCA 61.278 55.000 16.61 5.32 41.46 3.25
4570 4960 1.778017 TTCAGTGGGCTGCTGGCTAA 61.778 55.000 16.61 3.27 42.29 3.09
4574 4964 0.825010 AACTTTCAGTGGGCTGCTGG 60.825 55.000 0.00 0.00 42.29 4.85
4590 4980 7.514820 TGCTTATACCCTAATACCCATGTAACT 59.485 37.037 0.00 0.00 0.00 2.24
4598 4988 5.163437 CGATCCTGCTTATACCCTAATACCC 60.163 48.000 0.00 0.00 0.00 3.69
4599 4989 5.681695 GCGATCCTGCTTATACCCTAATACC 60.682 48.000 0.00 0.00 0.00 2.73
4600 4990 5.105473 TGCGATCCTGCTTATACCCTAATAC 60.105 44.000 0.00 0.00 35.36 1.89
4601 4991 5.020795 TGCGATCCTGCTTATACCCTAATA 58.979 41.667 0.00 0.00 35.36 0.98
4602 4992 3.838317 TGCGATCCTGCTTATACCCTAAT 59.162 43.478 0.00 0.00 35.36 1.73
4603 4993 3.006537 GTGCGATCCTGCTTATACCCTAA 59.993 47.826 0.00 0.00 35.36 2.69
4604 4994 2.561419 GTGCGATCCTGCTTATACCCTA 59.439 50.000 0.00 0.00 35.36 3.53
4605 4995 1.344763 GTGCGATCCTGCTTATACCCT 59.655 52.381 0.00 0.00 35.36 4.34
4667 5057 6.111382 TGTGCATTTTCTTCATCCACAAAAA 58.889 32.000 0.00 0.00 0.00 1.94
4668 5058 5.668471 TGTGCATTTTCTTCATCCACAAAA 58.332 33.333 0.00 0.00 0.00 2.44
4669 5059 5.273674 TGTGCATTTTCTTCATCCACAAA 57.726 34.783 0.00 0.00 0.00 2.83
4670 5060 4.933505 TGTGCATTTTCTTCATCCACAA 57.066 36.364 0.00 0.00 0.00 3.33
4671 5061 6.778834 ATATGTGCATTTTCTTCATCCACA 57.221 33.333 0.00 0.00 36.35 4.17
4672 5062 9.754382 AAATATATGTGCATTTTCTTCATCCAC 57.246 29.630 0.00 0.00 0.00 4.02
4673 5063 9.970395 GAAATATATGTGCATTTTCTTCATCCA 57.030 29.630 0.00 0.00 0.00 3.41
4692 5082 8.458843 GCCTGCAGTTTTTGAACTAGAAATATA 58.541 33.333 13.81 0.00 0.00 0.86
4693 5083 7.177392 AGCCTGCAGTTTTTGAACTAGAAATAT 59.823 33.333 13.81 0.00 0.00 1.28
4694 5084 6.490040 AGCCTGCAGTTTTTGAACTAGAAATA 59.510 34.615 13.81 0.00 0.00 1.40
4695 5085 5.302823 AGCCTGCAGTTTTTGAACTAGAAAT 59.697 36.000 13.81 0.00 0.00 2.17
4696 5086 4.644685 AGCCTGCAGTTTTTGAACTAGAAA 59.355 37.500 13.81 0.00 0.00 2.52
4708 5098 1.672356 CGCCTGTAGCCTGCAGTTT 60.672 57.895 13.81 2.50 38.78 2.66
4722 5112 0.246635 ACTTGCTATCGTGTTCGCCT 59.753 50.000 0.00 0.00 36.96 5.52
4747 5137 4.957684 AGTTTCACTAGTGTTGTAGCCT 57.042 40.909 21.99 7.30 0.00 4.58
4787 5177 1.651737 TGCCTGTAGCCTAAACCAGA 58.348 50.000 0.00 0.00 42.71 3.86
4788 5178 2.084546 GTTGCCTGTAGCCTAAACCAG 58.915 52.381 0.00 0.00 42.71 4.00
4804 5194 1.290009 GGTGGCACAATCTGGTTGC 59.710 57.895 20.82 0.00 44.16 4.17
4817 5207 1.615392 ACTTCTGAAGCAAATGGTGGC 59.385 47.619 17.00 0.00 0.00 5.01
4818 5208 2.886523 TCACTTCTGAAGCAAATGGTGG 59.113 45.455 17.00 0.00 0.00 4.61
4848 5238 0.934496 TTCGGTCAGTTTGTGAAGCG 59.066 50.000 0.00 0.00 36.74 4.68
4859 5249 2.032924 GGGTTCACAAAGTTTCGGTCAG 59.967 50.000 0.00 0.00 0.00 3.51
4874 5264 0.601558 GTAGTCTGCGTCTGGGTTCA 59.398 55.000 0.00 0.00 0.00 3.18
4900 5290 9.922951 GACGTTTTTCTTTCGAATTTATCATTG 57.077 29.630 0.00 0.00 0.00 2.82
4902 5292 9.329913 CTGACGTTTTTCTTTCGAATTTATCAT 57.670 29.630 0.00 0.00 0.00 2.45
4903 5293 8.552865 TCTGACGTTTTTCTTTCGAATTTATCA 58.447 29.630 0.00 0.00 0.00 2.15
4904 5294 8.928844 TCTGACGTTTTTCTTTCGAATTTATC 57.071 30.769 0.00 0.00 0.00 1.75
4905 5295 9.166126 GTTCTGACGTTTTTCTTTCGAATTTAT 57.834 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.