Multiple sequence alignment - TraesCS2A01G505900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G505900 chr2A 100.000 4209 0 0 374 4582 734086951 734091159 0.000000e+00 7773.0
1 TraesCS2A01G505900 chr2A 81.148 488 51 14 3285 3747 734098475 734098946 2.030000e-93 353.0
2 TraesCS2A01G505900 chr2A 100.000 58 0 0 1 58 734086578 734086635 1.740000e-19 108.0
3 TraesCS2A01G505900 chr2A 96.429 56 2 0 3 58 680506242 680506297 4.880000e-15 93.5
4 TraesCS2A01G505900 chr2B 87.550 1735 139 39 394 2105 730610037 730611717 0.000000e+00 1936.0
5 TraesCS2A01G505900 chr2B 93.470 536 26 5 2147 2676 730611713 730612245 0.000000e+00 787.0
6 TraesCS2A01G505900 chr2B 91.459 562 35 8 4009 4561 730613495 730614052 0.000000e+00 760.0
7 TraesCS2A01G505900 chr2B 85.714 700 63 21 2953 3625 730612513 730613202 0.000000e+00 704.0
8 TraesCS2A01G505900 chr2B 85.304 626 76 10 1275 1894 730639935 730640550 2.330000e-177 632.0
9 TraesCS2A01G505900 chr2B 96.296 54 2 0 5 58 659024737 659024684 6.310000e-14 89.8
10 TraesCS2A01G505900 chr2D 90.096 1454 91 19 3146 4561 600405705 600407143 0.000000e+00 1838.0
11 TraesCS2A01G505900 chr2D 89.609 1357 89 20 1821 3137 600403938 600405282 0.000000e+00 1677.0
12 TraesCS2A01G505900 chr2D 88.034 1287 102 30 552 1824 600402544 600403792 0.000000e+00 1476.0
13 TraesCS2A01G505900 chr2D 83.049 997 119 28 913 1894 600428578 600429539 0.000000e+00 859.0
14 TraesCS2A01G505900 chr2D 83.705 448 45 12 3285 3719 600430419 600430851 9.240000e-107 398.0
15 TraesCS2A01G505900 chr1B 85.784 1238 99 30 2679 3874 680811798 680810596 0.000000e+00 1240.0
16 TraesCS2A01G505900 chr1B 84.800 375 28 15 4163 4517 680810323 680809958 2.620000e-92 350.0
17 TraesCS2A01G505900 chr1B 88.350 103 4 4 1664 1758 680812244 680812142 2.900000e-22 117.0
18 TraesCS2A01G505900 chr4A 90.881 329 26 3 2782 3107 614176857 614176530 5.440000e-119 438.0
19 TraesCS2A01G505900 chr4A 89.091 55 6 0 4 58 597075862 597075916 8.230000e-08 69.4
20 TraesCS2A01G505900 chr5A 85.261 441 41 14 4086 4521 290075106 290074685 2.530000e-117 433.0
21 TraesCS2A01G505900 chr5A 96.364 55 2 0 4 58 489658069 489658123 1.760000e-14 91.6
22 TraesCS2A01G505900 chr5D 83.864 471 49 16 4066 4523 217334625 217334169 1.520000e-114 424.0
23 TraesCS2A01G505900 chr7A 95.122 123 6 0 4400 4522 728291288 728291166 1.300000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G505900 chr2A 734086578 734091159 4581 False 3940.500000 7773 100.000000 1 4582 2 chr2A.!!$F3 4581
1 TraesCS2A01G505900 chr2B 730610037 730614052 4015 False 1046.750000 1936 89.548250 394 4561 4 chr2B.!!$F2 4167
2 TraesCS2A01G505900 chr2B 730639935 730640550 615 False 632.000000 632 85.304000 1275 1894 1 chr2B.!!$F1 619
3 TraesCS2A01G505900 chr2D 600402544 600407143 4599 False 1663.666667 1838 89.246333 552 4561 3 chr2D.!!$F1 4009
4 TraesCS2A01G505900 chr2D 600428578 600430851 2273 False 628.500000 859 83.377000 913 3719 2 chr2D.!!$F2 2806
5 TraesCS2A01G505900 chr1B 680809958 680812244 2286 True 569.000000 1240 86.311333 1664 4517 3 chr1B.!!$R1 2853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 908 0.037232 GGTACAGTGACACCTGGAGC 60.037 60.000 0.00 3.09 36.69 4.70 F
1231 1268 0.237235 GTTGCCTTTCATTCGTGCGA 59.763 50.000 0.00 0.00 0.00 5.10 F
1342 1380 0.250553 TGGTAAGGCGTTTCAGTGGG 60.251 55.000 0.00 0.00 0.00 4.61 F
1894 2108 0.723414 CATGGACTCGCATGTCACAC 59.277 55.000 8.11 0.00 38.61 3.82 F
1989 2207 1.066454 GTTTACCGCCTTGCAAGTTGT 59.934 47.619 24.35 18.80 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2192 0.240945 CCTTACAACTTGCAAGGCGG 59.759 55.000 29.18 19.47 34.43 6.13 R
2924 3336 0.731514 TACTCAACTCGGCGCTTTCG 60.732 55.000 7.64 1.98 39.07 3.46 R
3293 4309 2.747446 GGCTTTTAGTTTGGAGATCGCA 59.253 45.455 0.00 0.00 0.00 5.10 R
3462 4478 0.246635 AAGTCATCGTGGTCTTCGGG 59.753 55.000 0.00 0.00 0.00 5.14 R
3910 4972 0.586319 AAGAACCGTGCGTGTTCATG 59.414 50.000 19.67 0.00 43.57 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.222287 ATGTTTTGTGGGGTGCACT 57.778 47.368 17.98 0.00 0.00 4.40
19 20 1.494960 ATGTTTTGTGGGGTGCACTT 58.505 45.000 17.98 0.00 0.00 3.16
20 21 2.145397 TGTTTTGTGGGGTGCACTTA 57.855 45.000 17.98 0.09 0.00 2.24
21 22 2.457598 TGTTTTGTGGGGTGCACTTAA 58.542 42.857 17.98 0.00 0.00 1.85
22 23 2.832129 TGTTTTGTGGGGTGCACTTAAA 59.168 40.909 17.98 8.34 0.00 1.52
23 24 3.260884 TGTTTTGTGGGGTGCACTTAAAA 59.739 39.130 17.98 13.31 0.00 1.52
24 25 4.254492 GTTTTGTGGGGTGCACTTAAAAA 58.746 39.130 17.98 13.10 0.00 1.94
398 399 7.604657 AGAAATATAGATGGACGGAAGAACT 57.395 36.000 0.00 0.00 0.00 3.01
483 496 4.876701 GCTCACGGCCCATTATCA 57.123 55.556 0.00 0.00 34.27 2.15
494 507 3.481453 GCCCATTATCAGAAGGAGAACC 58.519 50.000 0.00 0.00 27.75 3.62
495 508 3.733337 CCCATTATCAGAAGGAGAACCG 58.267 50.000 0.00 0.00 41.83 4.44
496 509 3.388024 CCCATTATCAGAAGGAGAACCGA 59.612 47.826 0.00 0.00 41.83 4.69
497 510 4.141711 CCCATTATCAGAAGGAGAACCGAA 60.142 45.833 0.00 0.00 41.83 4.30
498 511 4.811557 CCATTATCAGAAGGAGAACCGAAC 59.188 45.833 0.00 0.00 41.83 3.95
499 512 2.656560 ATCAGAAGGAGAACCGAACG 57.343 50.000 0.00 0.00 41.83 3.95
510 523 1.450905 GAACCGAACGAACGACTTCAG 59.549 52.381 0.14 0.00 35.09 3.02
513 526 1.714460 CCGAACGAACGACTTCAGAAG 59.286 52.381 8.77 8.77 35.09 2.85
522 535 1.687628 GACTTCAGAAGGTCGACGTG 58.312 55.000 12.13 5.57 0.00 4.49
527 540 3.380479 TCAGAAGGTCGACGTGAAAAT 57.620 42.857 12.13 0.00 0.00 1.82
530 543 5.475719 TCAGAAGGTCGACGTGAAAATAAT 58.524 37.500 12.13 0.00 0.00 1.28
585 598 0.038892 TCACCGTCGTTTGCCTAGAC 60.039 55.000 0.00 0.00 0.00 2.59
603 616 2.036089 AGACAAAAGAGAGTCACCGTCC 59.964 50.000 0.00 0.00 37.23 4.79
607 620 0.406361 AAGAGAGTCACCGTCCTCCT 59.594 55.000 0.00 0.00 0.00 3.69
620 633 1.045350 TCCTCCTCCGCCTTCTCATG 61.045 60.000 0.00 0.00 0.00 3.07
700 713 2.445845 CCACCGATCCTGCCCCTA 60.446 66.667 0.00 0.00 0.00 3.53
701 714 2.511452 CCACCGATCCTGCCCCTAG 61.511 68.421 0.00 0.00 0.00 3.02
702 715 1.762460 CACCGATCCTGCCCCTAGT 60.762 63.158 0.00 0.00 0.00 2.57
704 717 1.049289 ACCGATCCTGCCCCTAGTTC 61.049 60.000 0.00 0.00 0.00 3.01
705 718 1.749033 CGATCCTGCCCCTAGTTCC 59.251 63.158 0.00 0.00 0.00 3.62
706 719 1.749033 GATCCTGCCCCTAGTTCCG 59.251 63.158 0.00 0.00 0.00 4.30
708 721 0.104934 ATCCTGCCCCTAGTTCCGAT 60.105 55.000 0.00 0.00 0.00 4.18
710 723 1.749033 CTGCCCCTAGTTCCGATCC 59.251 63.158 0.00 0.00 0.00 3.36
712 725 0.559205 TGCCCCTAGTTCCGATCCTA 59.441 55.000 0.00 0.00 0.00 2.94
713 726 1.258676 GCCCCTAGTTCCGATCCTAG 58.741 60.000 0.00 0.00 0.00 3.02
714 727 1.480869 GCCCCTAGTTCCGATCCTAGT 60.481 57.143 3.88 0.00 30.79 2.57
715 728 2.516906 CCCCTAGTTCCGATCCTAGTC 58.483 57.143 3.88 0.00 30.79 2.59
717 730 2.516906 CCTAGTTCCGATCCTAGTCCC 58.483 57.143 3.88 0.00 30.79 4.46
718 731 2.158505 CCTAGTTCCGATCCTAGTCCCA 60.159 54.545 3.88 0.00 30.79 4.37
719 732 2.074729 AGTTCCGATCCTAGTCCCAG 57.925 55.000 0.00 0.00 0.00 4.45
720 733 0.389757 GTTCCGATCCTAGTCCCAGC 59.610 60.000 0.00 0.00 0.00 4.85
739 764 1.691337 CGTCTCCCCCATACCCCAA 60.691 63.158 0.00 0.00 0.00 4.12
740 765 1.920532 GTCTCCCCCATACCCCAAC 59.079 63.158 0.00 0.00 0.00 3.77
741 766 1.308392 TCTCCCCCATACCCCAACC 60.308 63.158 0.00 0.00 0.00 3.77
742 767 2.693115 TCCCCCATACCCCAACCG 60.693 66.667 0.00 0.00 0.00 4.44
743 768 4.516258 CCCCCATACCCCAACCGC 62.516 72.222 0.00 0.00 0.00 5.68
744 769 4.516258 CCCCATACCCCAACCGCC 62.516 72.222 0.00 0.00 0.00 6.13
745 770 3.416880 CCCATACCCCAACCGCCT 61.417 66.667 0.00 0.00 0.00 5.52
746 771 2.192175 CCATACCCCAACCGCCTC 59.808 66.667 0.00 0.00 0.00 4.70
747 772 2.192175 CATACCCCAACCGCCTCC 59.808 66.667 0.00 0.00 0.00 4.30
748 773 3.094498 ATACCCCAACCGCCTCCC 61.094 66.667 0.00 0.00 0.00 4.30
753 778 3.093835 CCAACCGCCTCCCCCATA 61.094 66.667 0.00 0.00 0.00 2.74
754 779 2.192175 CAACCGCCTCCCCCATAC 59.808 66.667 0.00 0.00 0.00 2.39
755 780 3.094498 AACCGCCTCCCCCATACC 61.094 66.667 0.00 0.00 0.00 2.73
831 863 4.428845 GGGACGGACTACTGGTCA 57.571 61.111 0.00 0.00 46.16 4.02
851 884 1.374758 CAGGTTCAGTCCAGGACGC 60.375 63.158 14.32 6.02 37.67 5.19
873 906 3.543112 TGGTACAGTGACACCTGGA 57.457 52.632 16.24 0.00 36.75 3.86
875 908 0.037232 GGTACAGTGACACCTGGAGC 60.037 60.000 0.00 3.09 36.69 4.70
892 925 4.020617 CCCTGCCGCTCCACTGAA 62.021 66.667 0.00 0.00 0.00 3.02
968 1004 0.766131 TGAAACGCCTTCCCCACTTA 59.234 50.000 0.00 0.00 32.53 2.24
976 1012 1.972660 CTTCCCCACTTAGCCTCCGG 61.973 65.000 0.00 0.00 0.00 5.14
992 1028 3.275088 GGGAGACGAACGAGCAGA 58.725 61.111 0.14 0.00 0.00 4.26
995 1031 0.241481 GGAGACGAACGAGCAGAGTT 59.759 55.000 0.14 0.00 34.07 3.01
1029 1065 2.035632 GGGTCTGTCATCGAGAGGAAT 58.964 52.381 0.00 0.00 0.00 3.01
1037 1073 1.960040 ATCGAGAGGAATGTGGCGCA 61.960 55.000 10.83 1.92 0.00 6.09
1158 1194 1.452651 CAATGATGGCACGGCTCCT 60.453 57.895 0.00 0.00 0.00 3.69
1195 1231 2.572104 GGTGTCTCTGGGTAATGTCCTT 59.428 50.000 0.00 0.00 0.00 3.36
1221 1258 4.023963 GGTGTCTTCAGTAAGTTGCCTTTC 60.024 45.833 0.00 0.00 34.13 2.62
1222 1259 4.574828 GTGTCTTCAGTAAGTTGCCTTTCA 59.425 41.667 0.00 0.00 34.13 2.69
1231 1268 0.237235 GTTGCCTTTCATTCGTGCGA 59.763 50.000 0.00 0.00 0.00 5.10
1234 1271 1.059369 CCTTTCATTCGTGCGAGCG 59.941 57.895 0.00 0.00 0.00 5.03
1342 1380 0.250553 TGGTAAGGCGTTTCAGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
1351 1389 3.444818 TTTCAGTGGGGGTGGCACC 62.445 63.158 28.69 28.69 37.60 5.01
1375 1417 3.074390 TCATTGTTGATCAGGGGACAGTT 59.926 43.478 0.00 0.00 0.00 3.16
1406 1448 3.070476 TCATATGCAACAAGACTGCCA 57.930 42.857 0.00 0.00 39.13 4.92
1501 1550 1.010797 CGGCGAATTTCATCTGCGG 60.011 57.895 0.00 0.00 0.00 5.69
1528 1577 7.944729 AAATGGTATGTCAAATTAGCAGACT 57.055 32.000 0.00 0.00 33.56 3.24
1529 1578 6.932356 ATGGTATGTCAAATTAGCAGACTG 57.068 37.500 0.00 0.00 33.56 3.51
1530 1579 5.185454 TGGTATGTCAAATTAGCAGACTGG 58.815 41.667 4.26 0.00 33.56 4.00
1531 1580 4.035675 GGTATGTCAAATTAGCAGACTGGC 59.964 45.833 4.26 0.00 33.56 4.85
1553 1602 2.957491 TTTCACCACTTGCCAGTTTG 57.043 45.000 0.00 0.00 0.00 2.93
1585 1634 9.927668 ACCATGGAGTTGTTTTATTTTAATCAG 57.072 29.630 21.47 0.00 0.00 2.90
1616 1665 5.211973 TCTATCATTGTTCCTAGTCAGGCT 58.788 41.667 0.00 0.00 42.30 4.58
1619 1668 4.326826 TCATTGTTCCTAGTCAGGCTTTG 58.673 43.478 0.00 0.00 42.30 2.77
1620 1669 4.041567 TCATTGTTCCTAGTCAGGCTTTGA 59.958 41.667 0.00 0.00 42.30 2.69
1633 1684 6.039047 AGTCAGGCTTTGATATGCATTTACAG 59.961 38.462 3.54 0.00 38.29 2.74
1660 1711 7.131907 ACCATTTATATAGTGGTGTGCACTA 57.868 36.000 19.41 1.35 44.21 2.74
1692 1743 5.359009 TCGAATTCCTGTACCGATCTTACTT 59.641 40.000 0.00 0.00 0.00 2.24
1695 1746 4.978083 TCCTGTACCGATCTTACTTGAC 57.022 45.455 0.00 0.00 0.00 3.18
1710 1763 4.830826 ACTTGACCGTTCATCCTTTTTC 57.169 40.909 0.00 0.00 0.00 2.29
1794 1858 4.388485 GGGCATGTTTTGAATTTTGACCT 58.612 39.130 0.00 0.00 29.29 3.85
1803 1867 2.095110 TGAATTTTGACCTGCTGCATCG 60.095 45.455 1.31 0.00 0.00 3.84
1804 1868 1.538047 ATTTTGACCTGCTGCATCGT 58.462 45.000 1.31 2.03 0.00 3.73
1805 1869 1.317613 TTTTGACCTGCTGCATCGTT 58.682 45.000 1.31 0.00 0.00 3.85
1884 2098 5.643777 AGATTAAAGTGAAACCATGGACTCG 59.356 40.000 21.47 0.00 37.80 4.18
1888 2102 1.131126 GTGAAACCATGGACTCGCATG 59.869 52.381 21.47 0.00 0.00 4.06
1894 2108 0.723414 CATGGACTCGCATGTCACAC 59.277 55.000 8.11 0.00 38.61 3.82
1898 2112 1.344942 GACTCGCATGTCACACGACC 61.345 60.000 0.00 0.00 41.85 4.79
1951 2169 5.366829 TTCTTGCTCTGAAATGTCATGTG 57.633 39.130 0.00 0.00 31.85 3.21
1974 2192 5.683743 TGTAAATGCGTTTTGCTCTGTTTAC 59.316 36.000 9.61 0.00 46.63 2.01
1975 2193 2.766970 TGCGTTTTGCTCTGTTTACC 57.233 45.000 0.00 0.00 46.63 2.85
1989 2207 1.066454 GTTTACCGCCTTGCAAGTTGT 59.934 47.619 24.35 18.80 0.00 3.32
2016 2234 7.062957 AGGGTTCCTGGAATGATTTAATGTAG 58.937 38.462 13.07 0.00 29.57 2.74
2019 2237 7.013369 GGTTCCTGGAATGATTTAATGTAGACC 59.987 40.741 13.07 0.00 0.00 3.85
2040 2267 7.460071 AGACCGAAGCTACTATCCTCTATTTA 58.540 38.462 0.00 0.00 0.00 1.40
2105 2333 7.942733 TGATCCTGGATCTGGCATATATATT 57.057 36.000 30.97 0.00 39.56 1.28
2106 2334 7.742767 TGATCCTGGATCTGGCATATATATTG 58.257 38.462 30.97 0.00 39.56 1.90
2107 2335 7.569858 TGATCCTGGATCTGGCATATATATTGA 59.430 37.037 30.97 7.93 39.56 2.57
2108 2336 7.754091 TCCTGGATCTGGCATATATATTGAA 57.246 36.000 0.00 0.00 0.00 2.69
2109 2337 8.341022 TCCTGGATCTGGCATATATATTGAAT 57.659 34.615 0.00 0.00 0.00 2.57
2143 2372 3.305267 GCCAATTTGCAGTGTACATGTGA 60.305 43.478 9.11 0.00 0.00 3.58
2445 2675 6.716934 TTAGAGACCTTAACTCTGGCTATG 57.283 41.667 0.00 0.00 43.37 2.23
2572 2816 1.906574 TCCAGTCGCTATCTTGGGTTT 59.093 47.619 0.00 0.00 0.00 3.27
2628 2872 5.979993 TGTAAACCACTGAACTGTCAACTA 58.020 37.500 0.00 0.00 31.88 2.24
2687 2934 6.988580 CAGTGGATGCACTCATCTTAGAATAA 59.011 38.462 17.98 0.00 46.41 1.40
2820 3093 7.624549 AGACTGAATAGGAAAGTTTATGAGCA 58.375 34.615 0.00 0.00 0.00 4.26
2924 3336 9.311916 GCATATCCTTGAGAATATCATGTAGTC 57.688 37.037 0.00 0.00 37.89 2.59
2933 3345 1.571919 ATCATGTAGTCGAAAGCGCC 58.428 50.000 2.29 0.00 37.46 6.53
2947 3359 1.519455 GCGCCGAGTTGAGTAGCAT 60.519 57.895 0.00 0.00 0.00 3.79
3108 3692 1.985159 TCCCTAAGTGGCACAATGACT 59.015 47.619 21.41 0.00 44.16 3.41
3171 4178 5.772672 TGTTGTTATTTTGTGATAGGGCTGT 59.227 36.000 0.00 0.00 0.00 4.40
3182 4189 4.633565 GTGATAGGGCTGTTTCTGAGAAAG 59.366 45.833 8.06 0.00 0.00 2.62
3184 4191 2.856222 AGGGCTGTTTCTGAGAAAGTG 58.144 47.619 8.06 5.41 0.00 3.16
3237 4253 6.966534 AGAAAGTCAGGAACATTGTCATTT 57.033 33.333 0.00 0.00 0.00 2.32
3239 4255 8.103948 AGAAAGTCAGGAACATTGTCATTTAG 57.896 34.615 0.00 0.00 0.00 1.85
3281 4297 2.432444 TCAACCATTACGAGCCTTTGG 58.568 47.619 0.00 0.00 0.00 3.28
3283 4299 2.817258 CAACCATTACGAGCCTTTGGAA 59.183 45.455 0.00 0.00 0.00 3.53
3287 4303 3.947834 CCATTACGAGCCTTTGGAATTCT 59.052 43.478 5.23 0.00 0.00 2.40
3293 4309 3.441572 CGAGCCTTTGGAATTCTGTCATT 59.558 43.478 5.23 0.00 0.00 2.57
3462 4478 2.671854 GAGCTAGAAACAGCGCTCC 58.328 57.895 7.13 0.00 46.52 4.70
3465 4481 1.519455 CTAGAAACAGCGCTCCCCG 60.519 63.158 7.13 0.00 40.75 5.73
3466 4482 1.945354 CTAGAAACAGCGCTCCCCGA 61.945 60.000 7.13 0.00 40.02 5.14
3467 4483 1.537814 TAGAAACAGCGCTCCCCGAA 61.538 55.000 7.13 0.00 40.02 4.30
3483 4499 1.067846 CCGAAGACCACGATGACTTCA 60.068 52.381 15.97 0.00 38.71 3.02
3561 4578 3.811702 CCCCCACAGCAGAGAGAA 58.188 61.111 0.00 0.00 0.00 2.87
3583 4600 0.180171 CAAGGATGGCCACGGTGATA 59.820 55.000 8.16 0.00 36.29 2.15
3634 4655 3.648009 CAATTTTTATGCCACACGGTGT 58.352 40.909 8.21 8.21 33.28 4.16
3803 4844 1.679977 AGGCCATTTGCGCTGTCAT 60.680 52.632 9.73 0.00 42.61 3.06
3810 4851 3.419915 CATTTGCGCTGTCATGAGTTAC 58.580 45.455 9.73 0.00 0.00 2.50
3843 4884 5.534654 AGTTATCTTTGGTAAACTGCTTGCA 59.465 36.000 0.00 0.00 31.20 4.08
3848 4889 3.138884 TGGTAAACTGCTTGCAGATCA 57.861 42.857 26.71 10.16 0.00 2.92
3850 4891 4.081406 TGGTAAACTGCTTGCAGATCATT 58.919 39.130 26.71 17.05 0.00 2.57
3867 4908 1.591158 CATTGTACGCGGTCCACATAC 59.409 52.381 12.47 2.05 0.00 2.39
3874 4933 1.143969 GCGGTCCACATACTACGCAC 61.144 60.000 0.00 0.00 45.57 5.34
3876 4935 0.526954 GGTCCACATACTACGCACCG 60.527 60.000 0.00 0.00 0.00 4.94
3899 4958 3.795639 TCGCACACAATTTGTTGAACATG 59.204 39.130 0.00 0.00 35.67 3.21
3902 4964 5.628606 CGCACACAATTTGTTGAACATGATA 59.371 36.000 0.00 0.00 35.67 2.15
3910 4972 4.782019 TGTTGAACATGATAGTTTGCCC 57.218 40.909 0.00 0.00 0.00 5.36
3940 5002 3.980775 CGCACGGTTCTTGAATTTCAATT 59.019 39.130 12.04 0.00 35.59 2.32
3954 5016 9.462174 TTGAATTTCAATTGTGTGTGTTATCTC 57.538 29.630 7.74 0.00 30.26 2.75
4327 5577 7.043656 GGAACCTTAACACAAAAACAAGAATCG 60.044 37.037 0.00 0.00 0.00 3.34
4380 5641 0.234106 CGCAACAGCAACAGTGAGAG 59.766 55.000 0.00 0.00 0.00 3.20
4381 5642 1.586422 GCAACAGCAACAGTGAGAGA 58.414 50.000 0.00 0.00 0.00 3.10
4486 5751 0.454600 TCGGCCTCGTTGTCATAGAC 59.545 55.000 0.00 0.00 37.69 2.59
4503 5768 1.630148 GACCCTCGTCTGTTTCATCG 58.370 55.000 0.00 0.00 35.99 3.84
4505 5770 1.067776 ACCCTCGTCTGTTTCATCGAC 60.068 52.381 0.00 0.00 0.00 4.20
4522 5787 3.596214 TCGACCAGCCAGAAAATTAGTC 58.404 45.455 0.00 0.00 0.00 2.59
4523 5788 2.348666 CGACCAGCCAGAAAATTAGTCG 59.651 50.000 0.00 0.00 39.71 4.18
4543 5808 3.873361 TCGATTGATGGAGCAAGAATGTC 59.127 43.478 0.00 0.00 0.00 3.06
4563 5828 1.640428 GGAACGCAACGAGATGATCA 58.360 50.000 0.00 0.00 0.00 2.92
4564 5829 1.590238 GGAACGCAACGAGATGATCAG 59.410 52.381 0.09 0.00 0.00 2.90
4565 5830 1.002366 AACGCAACGAGATGATCAGC 58.998 50.000 1.78 1.78 0.00 4.26
4566 5831 0.174389 ACGCAACGAGATGATCAGCT 59.826 50.000 14.53 14.53 0.00 4.24
4567 5832 0.575859 CGCAACGAGATGATCAGCTG 59.424 55.000 20.08 12.94 0.00 4.24
4568 5833 1.649664 GCAACGAGATGATCAGCTGT 58.350 50.000 20.08 13.59 0.00 4.40
4569 5834 2.796032 CGCAACGAGATGATCAGCTGTA 60.796 50.000 20.08 0.48 0.00 2.74
4570 5835 3.190079 GCAACGAGATGATCAGCTGTAA 58.810 45.455 20.08 0.58 0.00 2.41
4571 5836 3.244814 GCAACGAGATGATCAGCTGTAAG 59.755 47.826 20.08 12.97 0.00 2.34
4572 5837 4.676546 CAACGAGATGATCAGCTGTAAGA 58.323 43.478 20.08 0.00 34.07 2.10
4573 5838 4.991153 ACGAGATGATCAGCTGTAAGAA 57.009 40.909 20.08 0.00 34.07 2.52
4574 5839 4.930963 ACGAGATGATCAGCTGTAAGAAG 58.069 43.478 20.08 3.36 34.07 2.85
4575 5840 4.642437 ACGAGATGATCAGCTGTAAGAAGA 59.358 41.667 20.08 0.00 34.07 2.87
4576 5841 4.975502 CGAGATGATCAGCTGTAAGAAGAC 59.024 45.833 20.08 0.00 34.07 3.01
4577 5842 5.221028 CGAGATGATCAGCTGTAAGAAGACT 60.221 44.000 20.08 4.57 34.07 3.24
4578 5843 6.017523 CGAGATGATCAGCTGTAAGAAGACTA 60.018 42.308 20.08 0.00 34.07 2.59
4579 5844 7.308529 CGAGATGATCAGCTGTAAGAAGACTAT 60.309 40.741 20.08 0.00 34.07 2.12
4580 5845 8.932434 AGATGATCAGCTGTAAGAAGACTATA 57.068 34.615 13.77 0.00 34.07 1.31
4581 5846 9.013229 AGATGATCAGCTGTAAGAAGACTATAG 57.987 37.037 13.77 0.00 34.07 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
373 374 8.707796 AGTTCTTCCGTCCATCTATATTTCTA 57.292 34.615 0.00 0.00 0.00 2.10
374 375 7.604657 AGTTCTTCCGTCCATCTATATTTCT 57.395 36.000 0.00 0.00 0.00 2.52
375 376 8.664211 AAAGTTCTTCCGTCCATCTATATTTC 57.336 34.615 0.00 0.00 0.00 2.17
376 377 9.462606 AAAAAGTTCTTCCGTCCATCTATATTT 57.537 29.630 0.00 0.00 0.00 1.40
408 409 8.597167 TCAGTTATTCTCTTCCAGATTCTCAAA 58.403 33.333 0.00 0.00 0.00 2.69
415 416 6.126911 GGAACCTCAGTTATTCTCTTCCAGAT 60.127 42.308 0.00 0.00 35.94 2.90
416 417 5.187967 GGAACCTCAGTTATTCTCTTCCAGA 59.812 44.000 0.00 0.00 35.94 3.86
428 430 3.362706 ACATAGAGCGGAACCTCAGTTA 58.637 45.455 0.00 0.00 35.94 2.24
435 437 1.095807 GCCCAACATAGAGCGGAACC 61.096 60.000 0.00 0.00 0.00 3.62
468 481 1.140852 CCTTCTGATAATGGGCCGTGA 59.859 52.381 0.00 0.00 0.00 4.35
483 496 1.335689 CGTTCGTTCGGTTCTCCTTCT 60.336 52.381 0.00 0.00 0.00 2.85
494 507 1.714460 CCTTCTGAAGTCGTTCGTTCG 59.286 52.381 15.72 0.00 35.17 3.95
495 508 2.725206 GACCTTCTGAAGTCGTTCGTTC 59.275 50.000 15.72 0.00 35.17 3.95
496 509 2.740452 GACCTTCTGAAGTCGTTCGTT 58.260 47.619 15.72 0.00 35.17 3.85
497 510 1.334779 CGACCTTCTGAAGTCGTTCGT 60.335 52.381 22.57 12.00 35.17 3.85
498 511 1.069432 TCGACCTTCTGAAGTCGTTCG 60.069 52.381 26.18 21.30 39.89 3.95
499 512 2.317684 GTCGACCTTCTGAAGTCGTTC 58.682 52.381 26.18 20.36 39.89 3.95
510 523 6.237755 CCACTATTATTTTCACGTCGACCTTC 60.238 42.308 10.58 0.00 0.00 3.46
513 526 4.269363 CCCACTATTATTTTCACGTCGACC 59.731 45.833 10.58 0.00 0.00 4.79
522 535 6.943146 GGAGATCTTCCCCCACTATTATTTTC 59.057 42.308 0.00 0.00 40.37 2.29
585 598 2.610727 GGAGGACGGTGACTCTCTTTTG 60.611 54.545 8.71 0.00 34.22 2.44
603 616 1.445095 CCATGAGAAGGCGGAGGAG 59.555 63.158 0.00 0.00 0.00 3.69
647 660 2.066999 GGACTAGGGGCAGGGAGTG 61.067 68.421 0.00 0.00 0.00 3.51
648 661 2.369001 GGACTAGGGGCAGGGAGT 59.631 66.667 0.00 0.00 0.00 3.85
689 702 0.104934 ATCGGAACTAGGGGCAGGAT 60.105 55.000 0.00 0.00 0.00 3.24
693 706 0.559205 TAGGATCGGAACTAGGGGCA 59.441 55.000 0.00 0.00 0.00 5.36
694 707 1.258676 CTAGGATCGGAACTAGGGGC 58.741 60.000 10.56 0.00 34.45 5.80
695 708 2.516906 GACTAGGATCGGAACTAGGGG 58.483 57.143 18.43 2.48 40.71 4.79
696 709 2.516906 GGACTAGGATCGGAACTAGGG 58.483 57.143 18.43 3.00 40.71 3.53
698 711 3.150767 CTGGGACTAGGATCGGAACTAG 58.849 54.545 14.76 14.76 41.83 2.57
700 713 2.030045 GCTGGGACTAGGATCGGAACT 61.030 57.143 0.00 0.00 0.00 3.01
701 714 0.389757 GCTGGGACTAGGATCGGAAC 59.610 60.000 0.00 0.00 0.00 3.62
702 715 0.759436 GGCTGGGACTAGGATCGGAA 60.759 60.000 0.00 0.00 0.00 4.30
704 717 2.565645 CGGCTGGGACTAGGATCGG 61.566 68.421 0.00 0.00 0.00 4.18
705 718 1.797211 GACGGCTGGGACTAGGATCG 61.797 65.000 0.00 0.00 0.00 3.69
706 719 0.468400 AGACGGCTGGGACTAGGATC 60.468 60.000 0.00 0.00 0.00 3.36
708 721 1.076923 GAGACGGCTGGGACTAGGA 60.077 63.158 0.00 0.00 0.00 2.94
710 723 2.128507 GGGAGACGGCTGGGACTAG 61.129 68.421 0.00 0.00 0.00 2.57
717 730 2.808206 GGTATGGGGGAGACGGCTG 61.808 68.421 0.00 0.00 0.00 4.85
718 731 2.446036 GGTATGGGGGAGACGGCT 60.446 66.667 0.00 0.00 0.00 5.52
719 732 3.557290 GGGTATGGGGGAGACGGC 61.557 72.222 0.00 0.00 0.00 5.68
720 733 2.847715 GGGGTATGGGGGAGACGG 60.848 72.222 0.00 0.00 0.00 4.79
742 767 3.178611 CTGGGGTATGGGGGAGGC 61.179 72.222 0.00 0.00 0.00 4.70
743 768 3.178611 GCTGGGGTATGGGGGAGG 61.179 72.222 0.00 0.00 0.00 4.30
744 769 3.178611 GGCTGGGGTATGGGGGAG 61.179 72.222 0.00 0.00 0.00 4.30
749 774 4.256180 GAGGCGGCTGGGGTATGG 62.256 72.222 19.63 0.00 0.00 2.74
750 775 4.256180 GGAGGCGGCTGGGGTATG 62.256 72.222 19.63 0.00 0.00 2.39
757 782 4.845580 AATGAGCGGAGGCGGCTG 62.846 66.667 19.63 3.53 46.35 4.85
758 783 4.537433 GAATGAGCGGAGGCGGCT 62.537 66.667 13.09 13.09 46.35 5.52
830 862 0.321122 GTCCTGGACTGAACCTGCTG 60.321 60.000 19.53 0.00 0.00 4.41
831 863 1.821061 CGTCCTGGACTGAACCTGCT 61.821 60.000 23.49 0.00 0.00 4.24
851 884 1.374252 GGTGTCACTGTACCAGCCG 60.374 63.158 2.35 0.00 36.94 5.52
875 908 4.020617 TTCAGTGGAGCGGCAGGG 62.021 66.667 1.45 0.00 0.00 4.45
883 916 1.268794 CGGATCGCTAGTTCAGTGGAG 60.269 57.143 0.00 0.00 35.34 3.86
888 921 1.676529 TCCTTCGGATCGCTAGTTCAG 59.323 52.381 0.00 0.00 0.00 3.02
892 925 1.787057 CGCTCCTTCGGATCGCTAGT 61.787 60.000 0.00 0.00 34.66 2.57
976 1012 0.241481 AACTCTGCTCGTTCGTCTCC 59.759 55.000 0.00 0.00 0.00 3.71
992 1028 1.343465 ACCCGAACGTCATTCTCAACT 59.657 47.619 0.00 0.00 34.88 3.16
995 1031 1.067846 CAGACCCGAACGTCATTCTCA 60.068 52.381 0.00 0.00 34.88 3.27
1071 1107 3.382803 GAGCTGCTGCAGGATCGGT 62.383 63.158 29.05 10.89 42.74 4.69
1195 1231 3.128349 GCAACTTACTGAAGACACCGAA 58.872 45.455 0.00 0.00 36.45 4.30
1221 1258 1.071019 ACACTACGCTCGCACGAATG 61.071 55.000 3.88 2.17 36.70 2.67
1222 1259 1.071019 CACACTACGCTCGCACGAAT 61.071 55.000 3.88 0.00 36.70 3.34
1231 1268 4.873827 CCATATAAACAACCACACTACGCT 59.126 41.667 0.00 0.00 0.00 5.07
1234 1271 7.747357 CGAAAACCATATAAACAACCACACTAC 59.253 37.037 0.00 0.00 0.00 2.73
1333 1371 2.197324 GTGCCACCCCCACTGAAA 59.803 61.111 0.00 0.00 0.00 2.69
1342 1380 1.901464 AACAATGACGGTGCCACCC 60.901 57.895 8.62 0.00 33.75 4.61
1351 1389 2.009774 GTCCCCTGATCAACAATGACG 58.990 52.381 0.00 0.00 38.69 4.35
1375 1417 4.068599 TGTTGCATATGAAGGTGACGAAA 58.931 39.130 6.97 0.00 0.00 3.46
1501 1550 7.702348 GTCTGCTAATTTGACATACCATTTTCC 59.298 37.037 0.00 0.00 0.00 3.13
1528 1577 1.544724 GGCAAGTGGTGAAATAGCCA 58.455 50.000 0.00 0.00 40.29 4.75
1529 1578 1.474077 CTGGCAAGTGGTGAAATAGCC 59.526 52.381 0.00 0.00 40.93 3.93
1530 1579 2.162681 ACTGGCAAGTGGTGAAATAGC 58.837 47.619 0.00 0.00 34.48 2.97
1531 1580 4.278170 TCAAACTGGCAAGTGGTGAAATAG 59.722 41.667 0.00 0.00 36.51 1.73
1616 1665 4.637977 TGGTCGCTGTAAATGCATATCAAA 59.362 37.500 0.00 0.00 0.00 2.69
1619 1668 5.362556 AATGGTCGCTGTAAATGCATATC 57.637 39.130 0.00 0.00 0.00 1.63
1620 1669 5.772825 AAATGGTCGCTGTAAATGCATAT 57.227 34.783 0.00 0.00 0.00 1.78
1633 1684 4.084013 GCACACCACTATATAAATGGTCGC 60.084 45.833 13.23 14.16 45.11 5.19
1660 1711 4.261656 CGGTACAGGAATTCGAGAATAGCT 60.262 45.833 0.00 0.00 0.00 3.32
1692 1743 3.072476 AGGAGAAAAAGGATGAACGGTCA 59.928 43.478 5.17 5.17 38.41 4.02
1695 1746 3.686726 CAGAGGAGAAAAAGGATGAACGG 59.313 47.826 0.00 0.00 0.00 4.44
1834 2047 6.697395 TGCTATCTAAAGTTGCAGACTACAA 58.303 36.000 2.60 0.00 37.72 2.41
1868 2082 1.131126 CATGCGAGTCCATGGTTTCAC 59.869 52.381 12.58 1.94 39.08 3.18
1870 2084 1.398390 GACATGCGAGTCCATGGTTTC 59.602 52.381 12.58 9.70 45.29 2.78
1873 2087 0.391661 GTGACATGCGAGTCCATGGT 60.392 55.000 12.58 0.00 45.29 3.55
1888 2102 1.195448 CAGAATTGCTGGTCGTGTGAC 59.805 52.381 0.00 0.00 44.72 3.67
1898 2112 3.028850 ACAATGGGGATCAGAATTGCTG 58.971 45.455 11.34 0.00 46.31 4.41
1951 2169 5.116528 GGTAAACAGAGCAAAACGCATTTAC 59.883 40.000 0.00 0.00 46.13 2.01
1974 2192 0.240945 CCTTACAACTTGCAAGGCGG 59.759 55.000 29.18 19.47 34.43 6.13
1975 2193 0.240945 CCCTTACAACTTGCAAGGCG 59.759 55.000 29.18 21.07 39.14 5.52
1989 2207 7.418378 ACATTAAATCATTCCAGGAACCCTTA 58.582 34.615 3.18 0.00 0.00 2.69
2016 2234 6.578163 AAATAGAGGATAGTAGCTTCGGTC 57.422 41.667 0.00 0.00 0.00 4.79
2105 2333 6.985645 GCAAATTGGCATACCTGAAATATTCA 59.014 34.615 0.00 0.00 38.17 2.57
2106 2334 6.985645 TGCAAATTGGCATACCTGAAATATTC 59.014 34.615 2.48 0.00 39.25 1.75
2107 2335 6.887013 TGCAAATTGGCATACCTGAAATATT 58.113 32.000 2.48 0.00 39.25 1.28
2108 2336 6.098695 ACTGCAAATTGGCATACCTGAAATAT 59.901 34.615 8.25 0.00 43.97 1.28
2109 2337 5.421693 ACTGCAAATTGGCATACCTGAAATA 59.578 36.000 8.25 0.00 43.97 1.40
2118 2347 4.462132 ACATGTACACTGCAAATTGGCATA 59.538 37.500 8.25 0.00 43.97 3.14
2122 2351 4.502171 TCACATGTACACTGCAAATTGG 57.498 40.909 0.00 0.00 0.00 3.16
2419 2649 6.628644 AGCCAGAGTTAAGGTCTCTAAATT 57.371 37.500 0.00 0.00 39.84 1.82
2445 2675 8.839310 AACAATAGAAGCTGATATGGACATAC 57.161 34.615 0.00 0.00 0.00 2.39
2489 2727 3.265737 ACATACCAACATTGACCAGCCTA 59.734 43.478 0.00 0.00 0.00 3.93
2500 2738 4.227197 TGTTTGGGGAAACATACCAACAT 58.773 39.130 0.00 0.00 43.43 2.71
2572 2816 9.444600 GTCATCCCAAGTGTTTAGAAAATAGTA 57.555 33.333 0.00 0.00 0.00 1.82
2586 2830 7.201732 GGTTTACATATCTTGTCATCCCAAGTG 60.202 40.741 0.00 0.00 42.01 3.16
2590 2834 6.069673 AGTGGTTTACATATCTTGTCATCCCA 60.070 38.462 0.00 0.00 39.87 4.37
2591 2835 6.260936 CAGTGGTTTACATATCTTGTCATCCC 59.739 42.308 0.00 0.00 39.87 3.85
2687 2934 6.019156 CCGCACAAAGTTTTATGAAATGTGTT 60.019 34.615 13.50 0.00 36.42 3.32
2839 3112 4.037208 GCCCTTCAGGTGTCAATATCAATG 59.963 45.833 0.00 0.00 38.26 2.82
2924 3336 0.731514 TACTCAACTCGGCGCTTTCG 60.732 55.000 7.64 1.98 39.07 3.46
2933 3345 7.700322 AAACACATATATGCTACTCAACTCG 57.300 36.000 12.79 0.00 0.00 4.18
3108 3692 4.346709 TGAAAGACTGGGATGTACTCAACA 59.653 41.667 0.00 0.00 43.86 3.33
3171 4178 8.275015 TCATAACAACAACACTTTCTCAGAAA 57.725 30.769 0.00 0.00 0.00 2.52
3208 4221 8.912988 TGACAATGTTCCTGACTTTCTAAAATT 58.087 29.630 0.00 0.00 0.00 1.82
3229 4244 9.999009 CTAGACTATCAACGTACTAAATGACAA 57.001 33.333 0.00 0.00 0.00 3.18
3237 4253 5.301835 AGGCCTAGACTATCAACGTACTA 57.698 43.478 1.29 0.00 0.00 1.82
3239 4255 4.915158 AAGGCCTAGACTATCAACGTAC 57.085 45.455 5.16 0.00 0.00 3.67
3281 4297 3.873361 TGGAGATCGCAATGACAGAATTC 59.127 43.478 0.00 0.00 0.00 2.17
3283 4299 3.548745 TGGAGATCGCAATGACAGAAT 57.451 42.857 0.00 0.00 0.00 2.40
3287 4303 3.057969 AGTTTGGAGATCGCAATGACA 57.942 42.857 0.00 0.00 0.00 3.58
3293 4309 2.747446 GGCTTTTAGTTTGGAGATCGCA 59.253 45.455 0.00 0.00 0.00 5.10
3462 4478 0.246635 AAGTCATCGTGGTCTTCGGG 59.753 55.000 0.00 0.00 0.00 5.14
3465 4481 2.349886 GCATGAAGTCATCGTGGTCTTC 59.650 50.000 0.00 8.29 43.95 2.87
3466 4482 2.350522 GCATGAAGTCATCGTGGTCTT 58.649 47.619 0.00 0.00 43.95 3.01
3467 4483 1.406069 GGCATGAAGTCATCGTGGTCT 60.406 52.381 0.00 0.00 43.95 3.85
3483 4499 0.905357 AGCACCTTCGTAGAAGGCAT 59.095 50.000 24.13 10.81 45.90 4.40
3561 4578 0.680921 CACCGTGGCCATCCTTGAAT 60.681 55.000 9.72 0.00 0.00 2.57
3629 4650 2.035449 TGACTCCAAGTTGAGTACACCG 59.965 50.000 3.87 0.00 45.41 4.94
3631 4652 4.051922 CAGTGACTCCAAGTTGAGTACAC 58.948 47.826 3.87 13.88 45.41 2.90
3634 4655 2.965831 AGCAGTGACTCCAAGTTGAGTA 59.034 45.455 3.87 0.00 45.41 2.59
3680 4717 7.973048 ATATTGGAACTACACCTTCTGACTA 57.027 36.000 0.00 0.00 0.00 2.59
3682 4719 7.923414 AAATATTGGAACTACACCTTCTGAC 57.077 36.000 0.00 0.00 0.00 3.51
3798 4839 2.028567 TCATGTGCGGTAACTCATGACA 60.029 45.455 0.00 0.00 39.75 3.58
3803 4844 2.831685 AACTCATGTGCGGTAACTCA 57.168 45.000 0.00 0.00 0.00 3.41
3810 4851 3.009723 ACCAAAGATAACTCATGTGCGG 58.990 45.455 0.00 0.00 0.00 5.69
3843 4884 0.821517 TGGACCGCGTACAATGATCT 59.178 50.000 4.92 0.00 0.00 2.75
3848 4889 1.479323 AGTATGTGGACCGCGTACAAT 59.521 47.619 30.13 14.43 38.40 2.71
3850 4891 1.401552 GTAGTATGTGGACCGCGTACA 59.598 52.381 30.13 17.87 38.40 2.90
3867 4908 3.467119 GTGTGCGACGGTGCGTAG 61.467 66.667 0.00 0.00 41.37 3.51
3874 4933 1.119635 CAACAAATTGTGTGCGACGG 58.880 50.000 0.00 0.00 40.60 4.79
3876 4935 3.175152 TGTTCAACAAATTGTGTGCGAC 58.825 40.909 0.00 4.26 40.60 5.19
3899 4958 2.477863 GCGTGTTCATGGGCAAACTATC 60.478 50.000 0.00 0.00 0.00 2.08
3902 4964 1.106351 TGCGTGTTCATGGGCAAACT 61.106 50.000 0.00 0.00 31.50 2.66
3910 4972 0.586319 AAGAACCGTGCGTGTTCATG 59.414 50.000 19.67 0.00 43.57 3.07
3940 5002 6.090783 GTGATAAGTCGAGATAACACACACA 58.909 40.000 10.91 0.00 0.00 3.72
3998 5089 8.635328 TCATAAGACAACACTTTCACTAGTACA 58.365 33.333 0.00 0.00 0.00 2.90
4064 5302 2.488153 GTTGCAGATCAGTAAACACCCC 59.512 50.000 0.00 0.00 0.00 4.95
4114 5356 1.987807 AAGCTATCCATGGCAGCCGT 61.988 55.000 25.91 16.15 36.66 5.68
4327 5577 7.425606 TGGTCTTTTGTTAGATTTTGAAGCTC 58.574 34.615 0.00 0.00 0.00 4.09
4486 5751 1.630148 GTCGATGAAACAGACGAGGG 58.370 55.000 0.00 0.00 35.52 4.30
4503 5768 3.596214 TCGACTAATTTTCTGGCTGGTC 58.404 45.455 0.00 0.00 0.00 4.02
4505 5770 4.635765 TCAATCGACTAATTTTCTGGCTGG 59.364 41.667 0.00 0.00 0.00 4.85
4522 5787 3.302935 CGACATTCTTGCTCCATCAATCG 60.303 47.826 0.00 0.00 0.00 3.34
4523 5788 3.003068 CCGACATTCTTGCTCCATCAATC 59.997 47.826 0.00 0.00 0.00 2.67
4543 5808 0.572590 GATCATCTCGTTGCGTTCCG 59.427 55.000 0.00 0.00 0.00 4.30
4549 5814 1.649664 ACAGCTGATCATCTCGTTGC 58.350 50.000 23.35 0.00 0.00 4.17
4551 5816 4.991153 TCTTACAGCTGATCATCTCGTT 57.009 40.909 23.35 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.