Multiple sequence alignment - TraesCS2A01G505200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G505200 chr2A 100.000 4635 0 0 1 4635 733627800 733632434 0.000000e+00 8560.0
1 TraesCS2A01G505200 chr2A 83.346 2636 348 49 1064 3641 611302787 611305389 0.000000e+00 2351.0
2 TraesCS2A01G505200 chr2A 87.001 1677 183 20 915 2576 611295973 611297629 0.000000e+00 1857.0
3 TraesCS2A01G505200 chr2A 75.845 207 36 13 314 513 522382058 522381859 4.940000e-15 93.5
4 TraesCS2A01G505200 chr2D 95.453 3805 124 17 853 4635 599926176 599929953 0.000000e+00 6023.0
5 TraesCS2A01G505200 chr2D 88.877 2823 281 20 915 3724 469983854 469986656 0.000000e+00 3443.0
6 TraesCS2A01G505200 chr2B 95.471 3533 131 14 853 4375 729766346 729769859 0.000000e+00 5611.0
7 TraesCS2A01G505200 chr2B 83.745 2633 335 50 1064 3641 548623949 548626543 0.000000e+00 2405.0
8 TraesCS2A01G505200 chr2B 87.500 2056 224 18 915 2955 548609325 548611362 0.000000e+00 2342.0
9 TraesCS2A01G505200 chr2B 96.078 51 1 1 464 514 774082009 774081960 1.070000e-11 82.4
10 TraesCS2A01G505200 chr5B 83.819 2645 328 56 1130 3724 13776111 13773517 0.000000e+00 2422.0
11 TraesCS2A01G505200 chr1D 83.514 2681 345 57 1094 3724 407672556 407669923 0.000000e+00 2412.0
12 TraesCS2A01G505200 chr1D 82.497 2731 398 40 1034 3718 6714684 6711988 0.000000e+00 2322.0
13 TraesCS2A01G505200 chr1D 82.571 2645 361 51 1045 3636 6898391 6900988 0.000000e+00 2239.0
14 TraesCS2A01G505200 chr1D 82.879 514 83 4 1 514 352707989 352708497 1.520000e-124 457.0
15 TraesCS2A01G505200 chr1D 94.118 51 2 1 464 514 481935901 481935852 4.970000e-10 76.8
16 TraesCS2A01G505200 chr1A 82.273 2719 402 44 1047 3718 8144563 8141878 0.000000e+00 2278.0
17 TraesCS2A01G505200 chr4B 81.774 2705 401 49 1039 3694 36635920 36633259 0.000000e+00 2180.0
18 TraesCS2A01G505200 chr4B 88.696 115 12 1 399 513 490673544 490673431 6.250000e-29 139.0
19 TraesCS2A01G505200 chr4B 91.176 68 5 1 448 515 27182604 27182670 1.780000e-14 91.6
20 TraesCS2A01G505200 chr3B 78.116 2006 373 45 1614 3601 805337982 805339939 0.000000e+00 1212.0
21 TraesCS2A01G505200 chr4A 91.245 514 45 0 2 515 590200045 590200558 0.000000e+00 701.0
22 TraesCS2A01G505200 chr6A 89.922 516 51 1 1 516 537321123 537321637 0.000000e+00 664.0
23 TraesCS2A01G505200 chr5A 88.166 507 56 3 8 514 146216873 146216371 6.640000e-168 601.0
24 TraesCS2A01G505200 chr1B 77.960 853 126 31 1034 1850 9281195 9282021 1.170000e-130 477.0
25 TraesCS2A01G505200 chr3A 75.845 207 36 12 314 512 238674966 238675166 4.940000e-15 93.5
26 TraesCS2A01G505200 chr3D 96.078 51 1 1 464 514 468968800 468968849 1.070000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G505200 chr2A 733627800 733632434 4634 False 8560 8560 100.000 1 4635 1 chr2A.!!$F3 4634
1 TraesCS2A01G505200 chr2A 611302787 611305389 2602 False 2351 2351 83.346 1064 3641 1 chr2A.!!$F2 2577
2 TraesCS2A01G505200 chr2A 611295973 611297629 1656 False 1857 1857 87.001 915 2576 1 chr2A.!!$F1 1661
3 TraesCS2A01G505200 chr2D 599926176 599929953 3777 False 6023 6023 95.453 853 4635 1 chr2D.!!$F2 3782
4 TraesCS2A01G505200 chr2D 469983854 469986656 2802 False 3443 3443 88.877 915 3724 1 chr2D.!!$F1 2809
5 TraesCS2A01G505200 chr2B 729766346 729769859 3513 False 5611 5611 95.471 853 4375 1 chr2B.!!$F3 3522
6 TraesCS2A01G505200 chr2B 548623949 548626543 2594 False 2405 2405 83.745 1064 3641 1 chr2B.!!$F2 2577
7 TraesCS2A01G505200 chr2B 548609325 548611362 2037 False 2342 2342 87.500 915 2955 1 chr2B.!!$F1 2040
8 TraesCS2A01G505200 chr5B 13773517 13776111 2594 True 2422 2422 83.819 1130 3724 1 chr5B.!!$R1 2594
9 TraesCS2A01G505200 chr1D 407669923 407672556 2633 True 2412 2412 83.514 1094 3724 1 chr1D.!!$R2 2630
10 TraesCS2A01G505200 chr1D 6711988 6714684 2696 True 2322 2322 82.497 1034 3718 1 chr1D.!!$R1 2684
11 TraesCS2A01G505200 chr1D 6898391 6900988 2597 False 2239 2239 82.571 1045 3636 1 chr1D.!!$F1 2591
12 TraesCS2A01G505200 chr1D 352707989 352708497 508 False 457 457 82.879 1 514 1 chr1D.!!$F2 513
13 TraesCS2A01G505200 chr1A 8141878 8144563 2685 True 2278 2278 82.273 1047 3718 1 chr1A.!!$R1 2671
14 TraesCS2A01G505200 chr4B 36633259 36635920 2661 True 2180 2180 81.774 1039 3694 1 chr4B.!!$R1 2655
15 TraesCS2A01G505200 chr3B 805337982 805339939 1957 False 1212 1212 78.116 1614 3601 1 chr3B.!!$F1 1987
16 TraesCS2A01G505200 chr4A 590200045 590200558 513 False 701 701 91.245 2 515 1 chr4A.!!$F1 513
17 TraesCS2A01G505200 chr6A 537321123 537321637 514 False 664 664 89.922 1 516 1 chr6A.!!$F1 515
18 TraesCS2A01G505200 chr5A 146216371 146216873 502 True 601 601 88.166 8 514 1 chr5A.!!$R1 506
19 TraesCS2A01G505200 chr1B 9281195 9282021 826 False 477 477 77.960 1034 1850 1 chr1B.!!$F1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 755 0.034574 AATGGAATGGTACCTGCGCA 60.035 50.0 10.98 10.98 0.00 6.09 F
758 760 0.036164 AATGGTACCTGCGCACTGAA 59.964 50.0 14.36 0.00 0.00 3.02 F
904 906 0.319083 TGCGTACAGGTACCACCAAG 59.681 55.0 15.94 3.48 41.95 3.61 F
1767 1868 0.530870 GAACTAGACATCAGCGGGGC 60.531 60.0 0.00 0.00 0.00 5.80 F
2381 2494 1.015109 CTGCTCCTGCACTGCTTATG 58.985 55.0 1.98 0.00 45.31 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1868 0.320073 TAGGCGTTTGAGGACAACCG 60.320 55.000 0.00 0.00 43.00 4.44 R
1780 1881 1.192428 CTACAGAGGGGTTTAGGCGT 58.808 55.000 0.00 0.00 0.00 5.68 R
2381 2494 1.534595 GCATCTGCTGTTGCTATAGGC 59.465 52.381 16.73 0.00 40.48 3.93 R
2785 2911 1.877443 TCAAGCTTTTTCACCGCTACC 59.123 47.619 0.00 0.00 32.90 3.18 R
4215 4382 0.244450 AACAGTGGCAATGCATTCCG 59.756 50.000 15.76 0.04 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.961062 GGGAAGGCTGCATATCAACATT 59.039 45.455 0.50 0.00 0.00 2.71
183 185 5.233988 CAAAGGAGACACTTCTCTGGTAAG 58.766 45.833 1.86 0.00 46.80 2.34
187 189 3.827302 GAGACACTTCTCTGGTAAGGTGA 59.173 47.826 0.00 0.00 44.54 4.02
219 221 7.711339 GGATTTGATTCCTTCGTTATCAGTACT 59.289 37.037 0.00 0.00 32.68 2.73
238 240 3.160269 ACTTCTTGGCTGATTTGGAAGG 58.840 45.455 0.00 0.00 35.78 3.46
263 265 4.058124 CGGAATGTGAGAGTCTTCAACAA 58.942 43.478 7.95 0.00 0.00 2.83
270 272 5.006649 TGTGAGAGTCTTCAACAAACAATCG 59.993 40.000 0.00 0.00 0.00 3.34
285 287 1.131126 CAATCGCAACAAAGATCGGCT 59.869 47.619 0.00 0.00 0.00 5.52
286 288 0.729116 ATCGCAACAAAGATCGGCTG 59.271 50.000 0.00 0.00 0.00 4.85
333 335 2.192263 GAGGTGAAGACTTGGAGGGAT 58.808 52.381 0.00 0.00 0.00 3.85
354 356 1.558233 CAGGTTTCGGAGTAGGAGGT 58.442 55.000 0.00 0.00 0.00 3.85
360 362 4.381398 GGTTTCGGAGTAGGAGGTTTAGAC 60.381 50.000 0.00 0.00 0.00 2.59
379 381 3.323403 AGACCCTTTTGTGAGAGAGTGAG 59.677 47.826 0.00 0.00 0.00 3.51
381 383 3.070302 ACCCTTTTGTGAGAGAGTGAGTC 59.930 47.826 0.00 0.00 0.00 3.36
384 386 4.987912 CCTTTTGTGAGAGAGTGAGTCTTC 59.012 45.833 0.00 0.00 34.71 2.87
385 387 3.906014 TTGTGAGAGAGTGAGTCTTCG 57.094 47.619 0.00 0.00 34.71 3.79
386 388 3.127425 TGTGAGAGAGTGAGTCTTCGA 57.873 47.619 0.00 0.00 34.71 3.71
389 391 4.520874 TGTGAGAGAGTGAGTCTTCGATTT 59.479 41.667 0.00 0.00 34.71 2.17
390 392 4.856487 GTGAGAGAGTGAGTCTTCGATTTG 59.144 45.833 0.00 0.00 34.71 2.32
391 393 3.843999 AGAGAGTGAGTCTTCGATTTGC 58.156 45.455 0.00 0.00 34.71 3.68
392 394 3.509575 AGAGAGTGAGTCTTCGATTTGCT 59.490 43.478 0.00 0.00 34.71 3.91
393 395 3.843999 AGAGTGAGTCTTCGATTTGCTC 58.156 45.455 0.00 0.00 27.07 4.26
396 398 2.670414 GTGAGTCTTCGATTTGCTCCAG 59.330 50.000 0.00 0.00 0.00 3.86
416 418 2.773087 AGTGGTGTAAGGTGTTGGTGTA 59.227 45.455 0.00 0.00 0.00 2.90
418 420 2.158784 TGGTGTAAGGTGTTGGTGTACC 60.159 50.000 0.00 0.00 37.23 3.34
421 423 4.562143 GGTGTAAGGTGTTGGTGTACCTAG 60.562 50.000 2.32 0.00 46.28 3.02
429 431 2.105306 GTTGGTGTACCTAGGTTGGTGT 59.895 50.000 22.11 0.00 41.05 4.16
444 446 2.528797 GTGTTCGCACCCACACTAG 58.471 57.895 0.00 0.00 42.08 2.57
446 448 1.370064 GTTCGCACCCACACTAGGT 59.630 57.895 0.00 0.00 38.48 3.08
459 461 8.262227 CACCCACACTAGGTTCTTGTAATTATA 58.738 37.037 0.00 0.00 34.56 0.98
490 492 7.651027 TCCTTCTATAAAGTTAAGGTACGCT 57.349 36.000 0.00 0.00 39.62 5.07
495 497 9.754382 TTCTATAAAGTTAAGGTACGCTATTGG 57.246 33.333 0.00 0.00 0.00 3.16
536 538 8.970859 AAAAGATATCCGTTGAATTCTCATCT 57.029 30.769 7.05 2.04 0.00 2.90
537 539 7.959689 AAGATATCCGTTGAATTCTCATCTG 57.040 36.000 7.05 0.00 0.00 2.90
538 540 7.060383 AGATATCCGTTGAATTCTCATCTGT 57.940 36.000 7.05 0.00 0.00 3.41
539 541 8.183104 AGATATCCGTTGAATTCTCATCTGTA 57.817 34.615 7.05 0.00 0.00 2.74
540 542 8.642432 AGATATCCGTTGAATTCTCATCTGTAA 58.358 33.333 7.05 0.00 0.00 2.41
541 543 9.429359 GATATCCGTTGAATTCTCATCTGTAAT 57.571 33.333 7.05 0.00 0.00 1.89
543 545 8.824159 ATCCGTTGAATTCTCATCTGTAATAG 57.176 34.615 7.05 0.00 0.00 1.73
544 546 7.210174 TCCGTTGAATTCTCATCTGTAATAGG 58.790 38.462 7.05 0.00 0.00 2.57
545 547 6.986817 CCGTTGAATTCTCATCTGTAATAGGT 59.013 38.462 7.05 0.00 0.00 3.08
546 548 7.495934 CCGTTGAATTCTCATCTGTAATAGGTT 59.504 37.037 7.05 0.00 0.00 3.50
547 549 8.543774 CGTTGAATTCTCATCTGTAATAGGTTC 58.456 37.037 7.05 0.00 0.00 3.62
548 550 9.383519 GTTGAATTCTCATCTGTAATAGGTTCA 57.616 33.333 7.05 0.00 0.00 3.18
553 555 8.948631 TTCTCATCTGTAATAGGTTCATTGAC 57.051 34.615 0.00 0.00 0.00 3.18
554 556 8.078060 TCTCATCTGTAATAGGTTCATTGACA 57.922 34.615 0.00 0.00 0.00 3.58
555 557 7.981789 TCTCATCTGTAATAGGTTCATTGACAC 59.018 37.037 0.00 0.00 0.00 3.67
556 558 7.619965 TCATCTGTAATAGGTTCATTGACACA 58.380 34.615 0.00 0.00 0.00 3.72
557 559 7.549134 TCATCTGTAATAGGTTCATTGACACAC 59.451 37.037 0.00 0.00 0.00 3.82
558 560 6.764379 TCTGTAATAGGTTCATTGACACACA 58.236 36.000 0.00 0.00 0.00 3.72
559 561 6.649141 TCTGTAATAGGTTCATTGACACACAC 59.351 38.462 0.00 0.00 0.00 3.82
560 562 6.292150 TGTAATAGGTTCATTGACACACACA 58.708 36.000 0.00 0.00 0.00 3.72
561 563 6.939730 TGTAATAGGTTCATTGACACACACAT 59.060 34.615 0.00 0.00 0.00 3.21
562 564 6.899393 AATAGGTTCATTGACACACACATT 57.101 33.333 0.00 0.00 0.00 2.71
563 565 6.899393 ATAGGTTCATTGACACACACATTT 57.101 33.333 0.00 0.00 0.00 2.32
564 566 4.935702 AGGTTCATTGACACACACATTTG 58.064 39.130 0.00 0.00 0.00 2.32
565 567 4.402155 AGGTTCATTGACACACACATTTGT 59.598 37.500 0.00 0.00 35.84 2.83
578 580 4.637483 CACATTTGTGTCTGTTCTTGGT 57.363 40.909 2.48 0.00 40.96 3.67
579 581 4.997565 CACATTTGTGTCTGTTCTTGGTT 58.002 39.130 2.48 0.00 40.96 3.67
580 582 6.130298 CACATTTGTGTCTGTTCTTGGTTA 57.870 37.500 2.48 0.00 40.96 2.85
581 583 6.201517 CACATTTGTGTCTGTTCTTGGTTAG 58.798 40.000 2.48 0.00 40.96 2.34
582 584 5.885912 ACATTTGTGTCTGTTCTTGGTTAGT 59.114 36.000 0.00 0.00 0.00 2.24
583 585 7.011950 CACATTTGTGTCTGTTCTTGGTTAGTA 59.988 37.037 2.48 0.00 40.96 1.82
584 586 7.554835 ACATTTGTGTCTGTTCTTGGTTAGTAA 59.445 33.333 0.00 0.00 0.00 2.24
585 587 7.925043 TTTGTGTCTGTTCTTGGTTAGTAAA 57.075 32.000 0.00 0.00 0.00 2.01
586 588 7.925043 TTGTGTCTGTTCTTGGTTAGTAAAA 57.075 32.000 0.00 0.00 0.00 1.52
587 589 7.925043 TGTGTCTGTTCTTGGTTAGTAAAAA 57.075 32.000 0.00 0.00 0.00 1.94
588 590 7.981142 TGTGTCTGTTCTTGGTTAGTAAAAAG 58.019 34.615 1.71 1.71 0.00 2.27
589 591 7.825270 TGTGTCTGTTCTTGGTTAGTAAAAAGA 59.175 33.333 5.55 5.55 0.00 2.52
590 592 8.671028 GTGTCTGTTCTTGGTTAGTAAAAAGAA 58.329 33.333 13.98 13.98 36.55 2.52
591 593 9.403583 TGTCTGTTCTTGGTTAGTAAAAAGAAT 57.596 29.630 18.19 0.00 39.92 2.40
637 639 7.582435 TTCGAATTTAGCTCTCAACTAAGTG 57.418 36.000 0.00 0.00 31.56 3.16
638 640 6.920817 TCGAATTTAGCTCTCAACTAAGTGA 58.079 36.000 0.00 0.00 31.56 3.41
639 641 7.030165 TCGAATTTAGCTCTCAACTAAGTGAG 58.970 38.462 0.00 0.00 45.44 3.51
640 642 6.254589 CGAATTTAGCTCTCAACTAAGTGAGG 59.745 42.308 0.00 0.00 44.40 3.86
641 643 6.613153 ATTTAGCTCTCAACTAAGTGAGGT 57.387 37.500 0.00 0.00 44.40 3.85
642 644 3.951775 AGCTCTCAACTAAGTGAGGTG 57.048 47.619 2.57 0.00 45.16 4.00
643 645 3.235200 AGCTCTCAACTAAGTGAGGTGT 58.765 45.455 0.00 0.00 44.05 4.16
644 646 3.643792 AGCTCTCAACTAAGTGAGGTGTT 59.356 43.478 0.00 0.00 44.05 3.32
645 647 3.991121 GCTCTCAACTAAGTGAGGTGTTC 59.009 47.826 0.00 0.00 44.05 3.18
646 648 4.262249 GCTCTCAACTAAGTGAGGTGTTCT 60.262 45.833 0.00 0.00 44.05 3.01
647 649 5.740513 GCTCTCAACTAAGTGAGGTGTTCTT 60.741 44.000 0.00 0.00 44.05 2.52
648 650 6.235231 TCTCAACTAAGTGAGGTGTTCTTT 57.765 37.500 0.00 0.00 44.05 2.52
649 651 6.281405 TCTCAACTAAGTGAGGTGTTCTTTC 58.719 40.000 0.00 0.00 44.05 2.62
650 652 6.098409 TCTCAACTAAGTGAGGTGTTCTTTCT 59.902 38.462 0.00 0.00 44.05 2.52
651 653 6.650120 TCAACTAAGTGAGGTGTTCTTTCTT 58.350 36.000 0.00 0.00 44.05 2.52
652 654 6.538742 TCAACTAAGTGAGGTGTTCTTTCTTG 59.461 38.462 0.00 0.00 44.05 3.02
653 655 5.990668 ACTAAGTGAGGTGTTCTTTCTTGT 58.009 37.500 0.00 0.00 0.00 3.16
654 656 6.415573 ACTAAGTGAGGTGTTCTTTCTTGTT 58.584 36.000 0.00 0.00 0.00 2.83
655 657 6.884836 ACTAAGTGAGGTGTTCTTTCTTGTTT 59.115 34.615 0.00 0.00 0.00 2.83
656 658 8.044908 ACTAAGTGAGGTGTTCTTTCTTGTTTA 58.955 33.333 0.00 0.00 0.00 2.01
657 659 6.927294 AGTGAGGTGTTCTTTCTTGTTTAG 57.073 37.500 0.00 0.00 0.00 1.85
658 660 5.823045 AGTGAGGTGTTCTTTCTTGTTTAGG 59.177 40.000 0.00 0.00 0.00 2.69
659 661 4.578928 TGAGGTGTTCTTTCTTGTTTAGGC 59.421 41.667 0.00 0.00 0.00 3.93
660 662 4.793201 AGGTGTTCTTTCTTGTTTAGGCT 58.207 39.130 0.00 0.00 0.00 4.58
661 663 5.937111 AGGTGTTCTTTCTTGTTTAGGCTA 58.063 37.500 0.00 0.00 0.00 3.93
662 664 6.362248 AGGTGTTCTTTCTTGTTTAGGCTAA 58.638 36.000 2.04 2.04 0.00 3.09
663 665 7.004691 AGGTGTTCTTTCTTGTTTAGGCTAAT 58.995 34.615 7.96 0.00 0.00 1.73
664 666 8.161425 AGGTGTTCTTTCTTGTTTAGGCTAATA 58.839 33.333 7.96 0.00 0.00 0.98
665 667 8.789762 GGTGTTCTTTCTTGTTTAGGCTAATAA 58.210 33.333 7.96 6.11 0.00 1.40
666 668 9.608617 GTGTTCTTTCTTGTTTAGGCTAATAAC 57.391 33.333 7.96 4.99 0.00 1.89
667 669 9.344772 TGTTCTTTCTTGTTTAGGCTAATAACA 57.655 29.630 7.96 7.71 0.00 2.41
670 672 9.733556 TCTTTCTTGTTTAGGCTAATAACATGA 57.266 29.630 17.18 17.18 35.48 3.07
673 675 9.679661 TTCTTGTTTAGGCTAATAACATGATCA 57.320 29.630 19.80 0.00 36.48 2.92
674 676 9.851686 TCTTGTTTAGGCTAATAACATGATCAT 57.148 29.630 17.18 1.18 33.63 2.45
677 679 9.625747 TGTTTAGGCTAATAACATGATCATTCA 57.374 29.630 5.16 0.00 36.00 2.57
679 681 8.853077 TTAGGCTAATAACATGATCATTCAGG 57.147 34.615 5.16 0.00 39.53 3.86
680 682 5.709164 AGGCTAATAACATGATCATTCAGGC 59.291 40.000 5.16 8.97 37.15 4.85
681 683 5.105997 GGCTAATAACATGATCATTCAGGCC 60.106 44.000 5.16 9.70 37.15 5.19
682 684 5.474532 GCTAATAACATGATCATTCAGGCCA 59.525 40.000 5.16 0.00 37.15 5.36
683 685 6.152323 GCTAATAACATGATCATTCAGGCCAT 59.848 38.462 5.16 0.00 37.15 4.40
684 686 6.989155 AATAACATGATCATTCAGGCCATT 57.011 33.333 5.16 0.00 37.15 3.16
685 687 4.665833 AACATGATCATTCAGGCCATTG 57.334 40.909 5.16 0.00 37.15 2.82
686 688 2.364324 ACATGATCATTCAGGCCATTGC 59.636 45.455 5.16 0.00 37.15 3.56
687 689 2.447408 TGATCATTCAGGCCATTGCT 57.553 45.000 5.01 0.00 37.74 3.91
688 690 2.742348 TGATCATTCAGGCCATTGCTT 58.258 42.857 5.01 0.00 37.74 3.91
689 691 3.101437 TGATCATTCAGGCCATTGCTTT 58.899 40.909 5.01 0.00 37.74 3.51
690 692 3.516300 TGATCATTCAGGCCATTGCTTTT 59.484 39.130 5.01 0.00 37.74 2.27
691 693 4.020039 TGATCATTCAGGCCATTGCTTTTT 60.020 37.500 5.01 0.00 37.74 1.94
692 694 3.666274 TCATTCAGGCCATTGCTTTTTG 58.334 40.909 5.01 0.00 37.74 2.44
693 695 2.547299 TTCAGGCCATTGCTTTTTGG 57.453 45.000 5.01 0.00 37.74 3.28
698 700 2.547026 CCATTGCTTTTTGGCTGGC 58.453 52.632 0.00 0.00 0.00 4.85
699 701 0.250381 CCATTGCTTTTTGGCTGGCA 60.250 50.000 0.00 0.00 0.00 4.92
700 702 1.612199 CCATTGCTTTTTGGCTGGCAT 60.612 47.619 4.22 0.00 34.59 4.40
701 703 2.156098 CATTGCTTTTTGGCTGGCATT 58.844 42.857 4.22 0.00 34.59 3.56
702 704 1.881591 TTGCTTTTTGGCTGGCATTC 58.118 45.000 4.22 0.00 34.59 2.67
703 705 0.319727 TGCTTTTTGGCTGGCATTCG 60.320 50.000 4.22 0.00 0.00 3.34
704 706 0.038343 GCTTTTTGGCTGGCATTCGA 60.038 50.000 4.22 0.00 0.00 3.71
705 707 1.701704 CTTTTTGGCTGGCATTCGAC 58.298 50.000 4.22 0.00 0.00 4.20
706 708 1.000385 CTTTTTGGCTGGCATTCGACA 60.000 47.619 4.22 0.00 0.00 4.35
707 709 1.035923 TTTTGGCTGGCATTCGACAA 58.964 45.000 4.22 0.00 0.00 3.18
708 710 0.597568 TTTGGCTGGCATTCGACAAG 59.402 50.000 4.22 0.00 0.00 3.16
709 711 1.865788 TTGGCTGGCATTCGACAAGC 61.866 55.000 4.22 0.00 0.00 4.01
710 712 2.334946 GGCTGGCATTCGACAAGCA 61.335 57.895 3.56 0.00 0.00 3.91
711 713 1.136147 GCTGGCATTCGACAAGCAG 59.864 57.895 5.44 0.00 0.00 4.24
712 714 1.136147 CTGGCATTCGACAAGCAGC 59.864 57.895 5.44 0.00 0.00 5.25
713 715 1.579964 CTGGCATTCGACAAGCAGCA 61.580 55.000 0.00 0.00 0.00 4.41
714 716 0.961857 TGGCATTCGACAAGCAGCAT 60.962 50.000 0.00 0.00 0.00 3.79
715 717 0.524816 GGCATTCGACAAGCAGCATG 60.525 55.000 0.00 0.00 40.87 4.06
716 718 0.524816 GCATTCGACAAGCAGCATGG 60.525 55.000 2.09 0.00 35.86 3.66
726 728 3.502164 GCAGCATGGTATGAGGGTT 57.498 52.632 0.00 0.00 35.86 4.11
727 729 2.638480 GCAGCATGGTATGAGGGTTA 57.362 50.000 0.00 0.00 35.86 2.85
728 730 3.146104 GCAGCATGGTATGAGGGTTAT 57.854 47.619 0.00 0.00 35.86 1.89
729 731 3.077359 GCAGCATGGTATGAGGGTTATC 58.923 50.000 0.00 0.00 35.86 1.75
730 732 3.244700 GCAGCATGGTATGAGGGTTATCT 60.245 47.826 0.00 0.00 35.86 1.98
731 733 4.747931 GCAGCATGGTATGAGGGTTATCTT 60.748 45.833 0.00 0.00 35.86 2.40
732 734 4.999950 CAGCATGGTATGAGGGTTATCTTC 59.000 45.833 0.00 0.00 0.00 2.87
733 735 3.997021 GCATGGTATGAGGGTTATCTTCG 59.003 47.826 0.00 0.00 0.00 3.79
734 736 4.262463 GCATGGTATGAGGGTTATCTTCGA 60.262 45.833 0.00 0.00 0.00 3.71
735 737 5.741964 GCATGGTATGAGGGTTATCTTCGAA 60.742 44.000 0.00 0.00 0.00 3.71
736 738 6.467677 CATGGTATGAGGGTTATCTTCGAAT 58.532 40.000 0.00 0.00 0.00 3.34
737 739 5.853936 TGGTATGAGGGTTATCTTCGAATG 58.146 41.667 0.00 0.00 0.00 2.67
738 740 5.221641 TGGTATGAGGGTTATCTTCGAATGG 60.222 44.000 0.00 0.00 0.00 3.16
739 741 5.011738 GGTATGAGGGTTATCTTCGAATGGA 59.988 44.000 0.00 0.00 0.00 3.41
740 742 5.630415 ATGAGGGTTATCTTCGAATGGAA 57.370 39.130 0.00 0.00 0.00 3.53
741 743 5.630415 TGAGGGTTATCTTCGAATGGAAT 57.370 39.130 0.00 0.00 33.26 3.01
742 744 5.368145 TGAGGGTTATCTTCGAATGGAATG 58.632 41.667 0.00 0.00 33.26 2.67
743 745 4.718961 AGGGTTATCTTCGAATGGAATGG 58.281 43.478 0.00 0.00 33.26 3.16
744 746 4.166144 AGGGTTATCTTCGAATGGAATGGT 59.834 41.667 0.00 0.00 33.26 3.55
745 747 5.368523 AGGGTTATCTTCGAATGGAATGGTA 59.631 40.000 0.00 0.00 33.26 3.25
746 748 5.469084 GGGTTATCTTCGAATGGAATGGTAC 59.531 44.000 0.00 0.00 33.26 3.34
747 749 5.469084 GGTTATCTTCGAATGGAATGGTACC 59.531 44.000 4.43 4.43 33.26 3.34
748 750 6.289064 GTTATCTTCGAATGGAATGGTACCT 58.711 40.000 14.36 0.00 33.26 3.08
749 751 4.137116 TCTTCGAATGGAATGGTACCTG 57.863 45.455 14.36 0.00 33.26 4.00
750 752 2.325583 TCGAATGGAATGGTACCTGC 57.674 50.000 14.36 0.00 0.00 4.85
751 753 0.937304 CGAATGGAATGGTACCTGCG 59.063 55.000 14.36 0.00 0.00 5.18
752 754 0.663153 GAATGGAATGGTACCTGCGC 59.337 55.000 14.36 0.00 0.00 6.09
753 755 0.034574 AATGGAATGGTACCTGCGCA 60.035 50.000 10.98 10.98 0.00 6.09
754 756 0.748005 ATGGAATGGTACCTGCGCAC 60.748 55.000 14.36 0.00 0.00 5.34
755 757 1.078426 GGAATGGTACCTGCGCACT 60.078 57.895 14.36 0.00 0.00 4.40
756 758 1.369091 GGAATGGTACCTGCGCACTG 61.369 60.000 14.36 2.67 0.00 3.66
757 759 0.391130 GAATGGTACCTGCGCACTGA 60.391 55.000 14.36 0.00 0.00 3.41
758 760 0.036164 AATGGTACCTGCGCACTGAA 59.964 50.000 14.36 0.00 0.00 3.02
759 761 0.391661 ATGGTACCTGCGCACTGAAG 60.392 55.000 14.36 0.00 0.00 3.02
760 762 2.391389 GGTACCTGCGCACTGAAGC 61.391 63.158 5.66 0.00 0.00 3.86
761 763 1.374758 GTACCTGCGCACTGAAGCT 60.375 57.895 5.66 0.00 0.00 3.74
762 764 0.951040 GTACCTGCGCACTGAAGCTT 60.951 55.000 5.66 0.00 0.00 3.74
763 765 0.950555 TACCTGCGCACTGAAGCTTG 60.951 55.000 5.66 0.00 0.00 4.01
764 766 2.559840 CTGCGCACTGAAGCTTGG 59.440 61.111 5.66 0.00 0.00 3.61
765 767 2.203195 TGCGCACTGAAGCTTGGT 60.203 55.556 5.66 0.00 0.00 3.67
766 768 2.253452 GCGCACTGAAGCTTGGTG 59.747 61.111 19.10 19.10 0.00 4.17
767 769 2.949106 CGCACTGAAGCTTGGTGG 59.051 61.111 22.53 13.33 0.00 4.61
768 770 1.597854 CGCACTGAAGCTTGGTGGA 60.598 57.895 22.53 0.00 0.00 4.02
769 771 1.165907 CGCACTGAAGCTTGGTGGAA 61.166 55.000 22.53 0.00 0.00 3.53
770 772 0.595095 GCACTGAAGCTTGGTGGAAG 59.405 55.000 22.53 7.47 34.41 3.46
781 783 4.644103 CTTGGTGGAAGCCTCATAATTG 57.356 45.455 0.00 0.00 0.00 2.32
782 784 4.272489 CTTGGTGGAAGCCTCATAATTGA 58.728 43.478 0.00 0.00 0.00 2.57
783 785 3.620488 TGGTGGAAGCCTCATAATTGAC 58.380 45.455 0.00 0.00 0.00 3.18
784 786 3.266772 TGGTGGAAGCCTCATAATTGACT 59.733 43.478 0.00 0.00 0.00 3.41
785 787 4.263905 TGGTGGAAGCCTCATAATTGACTT 60.264 41.667 0.00 0.00 0.00 3.01
786 788 4.096984 GGTGGAAGCCTCATAATTGACTTG 59.903 45.833 0.00 0.00 0.00 3.16
787 789 4.943705 GTGGAAGCCTCATAATTGACTTGA 59.056 41.667 0.00 0.00 0.00 3.02
788 790 4.943705 TGGAAGCCTCATAATTGACTTGAC 59.056 41.667 0.00 0.00 0.00 3.18
789 791 4.336713 GGAAGCCTCATAATTGACTTGACC 59.663 45.833 0.00 0.00 0.00 4.02
790 792 4.574674 AGCCTCATAATTGACTTGACCA 57.425 40.909 0.00 0.00 0.00 4.02
791 793 5.121380 AGCCTCATAATTGACTTGACCAT 57.879 39.130 0.00 0.00 0.00 3.55
792 794 4.885907 AGCCTCATAATTGACTTGACCATG 59.114 41.667 0.00 0.00 0.00 3.66
793 795 4.883585 GCCTCATAATTGACTTGACCATGA 59.116 41.667 0.00 0.00 0.00 3.07
794 796 5.220931 GCCTCATAATTGACTTGACCATGAC 60.221 44.000 0.00 0.00 0.00 3.06
795 797 5.297776 CCTCATAATTGACTTGACCATGACC 59.702 44.000 0.00 0.00 0.00 4.02
796 798 5.814481 TCATAATTGACTTGACCATGACCA 58.186 37.500 0.00 0.00 0.00 4.02
797 799 6.425735 TCATAATTGACTTGACCATGACCAT 58.574 36.000 0.00 0.00 0.00 3.55
798 800 6.319405 TCATAATTGACTTGACCATGACCATG 59.681 38.462 0.00 3.11 38.51 3.66
823 825 4.889112 ATGGGCGGCTCCATGCAG 62.889 66.667 18.34 0.00 45.13 4.41
830 832 3.194719 GCTCCATGCAGCCACTTC 58.805 61.111 0.00 0.00 42.31 3.01
831 833 2.758089 GCTCCATGCAGCCACTTCG 61.758 63.158 0.00 0.00 42.31 3.79
832 834 1.376424 CTCCATGCAGCCACTTCGT 60.376 57.895 0.00 0.00 0.00 3.85
833 835 1.364626 CTCCATGCAGCCACTTCGTC 61.365 60.000 0.00 0.00 0.00 4.20
834 836 2.743752 CCATGCAGCCACTTCGTCG 61.744 63.158 0.00 0.00 0.00 5.12
835 837 1.737735 CATGCAGCCACTTCGTCGA 60.738 57.895 0.00 0.00 0.00 4.20
836 838 1.005037 ATGCAGCCACTTCGTCGAA 60.005 52.632 7.57 7.57 0.00 3.71
837 839 1.016130 ATGCAGCCACTTCGTCGAAG 61.016 55.000 28.91 28.91 44.37 3.79
838 840 3.016474 GCAGCCACTTCGTCGAAGC 62.016 63.158 30.10 19.59 42.79 3.86
839 841 1.373497 CAGCCACTTCGTCGAAGCT 60.373 57.895 30.10 21.34 42.79 3.74
840 842 0.946221 CAGCCACTTCGTCGAAGCTT 60.946 55.000 30.10 12.87 42.79 3.74
841 843 0.667792 AGCCACTTCGTCGAAGCTTC 60.668 55.000 30.10 16.84 42.79 3.86
842 844 0.944311 GCCACTTCGTCGAAGCTTCA 60.944 55.000 30.10 10.50 42.79 3.02
843 845 0.784778 CCACTTCGTCGAAGCTTCAC 59.215 55.000 30.10 19.54 42.79 3.18
844 846 1.603172 CCACTTCGTCGAAGCTTCACT 60.603 52.381 30.10 10.79 42.79 3.41
845 847 1.453524 CACTTCGTCGAAGCTTCACTG 59.546 52.381 30.10 17.92 42.79 3.66
846 848 1.063806 CTTCGTCGAAGCTTCACTGG 58.936 55.000 25.47 9.79 32.78 4.00
847 849 0.671796 TTCGTCGAAGCTTCACTGGA 59.328 50.000 25.47 11.99 0.00 3.86
848 850 0.671796 TCGTCGAAGCTTCACTGGAA 59.328 50.000 25.47 3.46 0.00 3.53
849 851 1.272490 TCGTCGAAGCTTCACTGGAAT 59.728 47.619 25.47 0.00 31.34 3.01
850 852 2.069273 CGTCGAAGCTTCACTGGAATT 58.931 47.619 25.47 0.00 31.34 2.17
851 853 2.092838 CGTCGAAGCTTCACTGGAATTC 59.907 50.000 25.47 0.00 31.34 2.17
871 873 4.468765 TCCACATGGTTTTATGGCAATG 57.531 40.909 0.00 0.00 36.34 2.82
875 877 3.261390 ACATGGTTTTATGGCAATGCTGT 59.739 39.130 4.82 0.00 32.32 4.40
878 880 3.577848 TGGTTTTATGGCAATGCTGTCTT 59.422 39.130 4.82 0.00 0.00 3.01
879 881 4.769488 TGGTTTTATGGCAATGCTGTCTTA 59.231 37.500 4.82 0.00 0.00 2.10
888 890 5.106594 TGGCAATGCTGTCTTATATTATGCG 60.107 40.000 4.82 0.00 0.00 4.73
891 893 6.955963 GCAATGCTGTCTTATATTATGCGTAC 59.044 38.462 0.00 0.00 0.00 3.67
894 896 6.156519 TGCTGTCTTATATTATGCGTACAGG 58.843 40.000 0.00 0.00 34.95 4.00
899 901 7.231115 TGTCTTATATTATGCGTACAGGTACCA 59.769 37.037 15.94 4.14 32.61 3.25
904 906 0.319083 TGCGTACAGGTACCACCAAG 59.681 55.000 15.94 3.48 41.95 3.61
906 908 0.319083 CGTACAGGTACCACCAAGCA 59.681 55.000 15.94 0.00 41.95 3.91
979 994 6.605471 TTTCCTAGTCAGCAATCTTGACTA 57.395 37.500 12.84 12.84 42.22 2.59
1021 1036 2.241160 TGCCAATCTGCTTGTTCACAT 58.759 42.857 0.00 0.00 32.61 3.21
1022 1037 2.229543 TGCCAATCTGCTTGTTCACATC 59.770 45.455 0.00 0.00 32.61 3.06
1023 1038 2.229543 GCCAATCTGCTTGTTCACATCA 59.770 45.455 0.00 0.00 32.61 3.07
1024 1039 3.829948 CCAATCTGCTTGTTCACATCAC 58.170 45.455 0.00 0.00 32.61 3.06
1025 1040 3.253921 CCAATCTGCTTGTTCACATCACA 59.746 43.478 0.00 0.00 32.61 3.58
1029 1044 4.058124 TCTGCTTGTTCACATCACACTAC 58.942 43.478 0.00 0.00 0.00 2.73
1119 1145 3.630168 TCTTCTCCATGTCTCTCCTCTG 58.370 50.000 0.00 0.00 0.00 3.35
1120 1146 2.450867 TCTCCATGTCTCTCCTCTGG 57.549 55.000 0.00 0.00 0.00 3.86
1510 1605 5.523552 TCGCATTGTCAATAATAGGACACAG 59.476 40.000 0.00 0.00 43.22 3.66
1516 1611 3.136443 TCAATAATAGGACACAGGCCAGG 59.864 47.826 5.01 0.00 0.00 4.45
1530 1628 1.686115 GGCCAGGAGCATAAACACCAT 60.686 52.381 0.00 0.00 46.50 3.55
1767 1868 0.530870 GAACTAGACATCAGCGGGGC 60.531 60.000 0.00 0.00 0.00 5.80
1780 1881 2.114411 GGGGCGGTTGTCCTCAAA 59.886 61.111 0.00 0.00 40.80 2.69
1840 1950 6.914654 TCCTCCAAAACATCATCATTGAAA 57.085 33.333 0.00 0.00 34.96 2.69
2381 2494 1.015109 CTGCTCCTGCACTGCTTATG 58.985 55.000 1.98 0.00 45.31 1.90
2440 2553 6.255950 GGAATTGCTTAGTGTAAATCGGAAC 58.744 40.000 0.00 0.00 0.00 3.62
2785 2911 7.002816 AGTATTAAGTGACTCGAAGACTACG 57.997 40.000 5.89 0.00 0.00 3.51
2791 2917 1.005137 GACTCGAAGACTACGGTAGCG 60.005 57.143 13.69 13.69 0.00 4.26
3290 3416 0.179094 TTACGGCTTCGGCATGGTAG 60.179 55.000 0.00 0.00 43.96 3.18
3761 3927 4.917385 TGGCAGAACTACCAATATGTGTT 58.083 39.130 0.00 0.00 31.46 3.32
3784 3950 8.253810 TGTTTGTTTTGTTGATTGGATAGTTCA 58.746 29.630 0.00 0.00 0.00 3.18
4136 4303 4.582240 GGCCTTCTTCTTTTGAGGATATGG 59.418 45.833 0.00 0.00 34.44 2.74
4144 4311 7.950124 TCTTCTTTTGAGGATATGGTTTCCTTT 59.050 33.333 0.00 0.00 43.75 3.11
4174 4341 8.821894 GTTTCTTGGAGATTGTAGTGATGATAC 58.178 37.037 0.00 0.00 0.00 2.24
4182 4349 7.208777 AGATTGTAGTGATGATACAGCTCTTG 58.791 38.462 0.00 0.00 34.76 3.02
4194 4361 6.592994 TGATACAGCTCTTGTTTCAGATTCAG 59.407 38.462 0.00 0.00 41.07 3.02
4320 4488 3.473625 ACCCGTAGAAGAAAACAACCAG 58.526 45.455 0.00 0.00 0.00 4.00
4340 4508 3.253677 CAGAGTAGACGAGAAGGTGTTGT 59.746 47.826 0.00 0.00 0.00 3.32
4341 4509 4.454847 CAGAGTAGACGAGAAGGTGTTGTA 59.545 45.833 0.00 0.00 0.00 2.41
4401 4577 2.838286 CAGAAGTGCTCTGGCTGAC 58.162 57.895 11.44 0.00 46.89 3.51
4402 4578 0.034476 CAGAAGTGCTCTGGCTGACA 59.966 55.000 11.44 0.00 46.89 3.58
4403 4579 1.940294 CAGAAGTGCTCTGGCTGACAG 60.940 57.143 3.47 3.47 46.89 3.51
4404 4580 4.498096 CAGAAGTGCTCTGGCTGACAGT 62.498 54.545 10.90 0.00 46.89 3.55
4428 4604 1.581934 TTCAGTCCACGCTGACAAAG 58.418 50.000 7.56 0.00 44.23 2.77
4463 4639 3.572642 TCCTCCTACTGTGAAGACAACA 58.427 45.455 0.00 0.00 0.00 3.33
4474 4650 3.194755 GTGAAGACAACACCTTGGGTTTT 59.805 43.478 0.00 0.00 31.02 2.43
4546 4722 5.819825 AAACAACTGTTTCTCTTCTGACC 57.180 39.130 1.94 0.00 44.15 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 221 3.424703 CTCCTTCCAAATCAGCCAAGAA 58.575 45.455 0.00 0.00 0.00 2.52
238 240 2.094494 TGAAGACTCTCACATTCCGCTC 60.094 50.000 0.00 0.00 0.00 5.03
263 265 2.668279 GCCGATCTTTGTTGCGATTGTT 60.668 45.455 0.00 0.00 0.00 2.83
270 272 1.512734 CGCAGCCGATCTTTGTTGC 60.513 57.895 5.80 5.80 36.29 4.17
285 287 1.869774 CCATGTCTATTAGCTGCGCA 58.130 50.000 10.98 10.98 0.00 6.09
286 288 0.514691 GCCATGTCTATTAGCTGCGC 59.485 55.000 0.00 0.00 0.00 6.09
294 296 0.389391 CGTCGAGGGCCATGTCTATT 59.611 55.000 6.18 0.00 0.00 1.73
333 335 0.895530 CTCCTACTCCGAAACCTGCA 59.104 55.000 0.00 0.00 0.00 4.41
354 356 5.365605 TCACTCTCTCACAAAAGGGTCTAAA 59.634 40.000 0.00 0.00 0.00 1.85
360 362 3.323403 AGACTCACTCTCTCACAAAAGGG 59.677 47.826 0.00 0.00 0.00 3.95
379 381 1.734465 CCACTGGAGCAAATCGAAGAC 59.266 52.381 0.00 0.00 42.51 3.01
381 383 1.466167 CACCACTGGAGCAAATCGAAG 59.534 52.381 0.71 0.00 0.00 3.79
384 386 2.093306 TACACCACTGGAGCAAATCG 57.907 50.000 0.71 0.00 0.00 3.34
385 387 2.749621 CCTTACACCACTGGAGCAAATC 59.250 50.000 0.71 0.00 0.00 2.17
386 388 2.108250 ACCTTACACCACTGGAGCAAAT 59.892 45.455 0.71 0.00 0.00 2.32
389 391 0.396435 CACCTTACACCACTGGAGCA 59.604 55.000 0.71 0.00 0.00 4.26
390 392 0.396811 ACACCTTACACCACTGGAGC 59.603 55.000 0.71 0.00 0.00 4.70
391 393 2.494059 CAACACCTTACACCACTGGAG 58.506 52.381 0.71 0.00 0.00 3.86
392 394 1.142060 CCAACACCTTACACCACTGGA 59.858 52.381 0.71 0.00 0.00 3.86
393 395 1.133915 ACCAACACCTTACACCACTGG 60.134 52.381 0.00 0.00 0.00 4.00
396 398 2.047002 ACACCAACACCTTACACCAC 57.953 50.000 0.00 0.00 0.00 4.16
416 418 0.250166 GTGCGAACACCAACCTAGGT 60.250 55.000 9.21 9.21 44.48 3.08
429 431 0.034337 GAACCTAGTGTGGGTGCGAA 59.966 55.000 0.00 0.00 37.13 4.70
488 490 4.939509 TTTTCAAGAGTACGCCAATAGC 57.060 40.909 0.00 0.00 38.52 2.97
512 514 7.989741 ACAGATGAGAATTCAACGGATATCTTT 59.010 33.333 8.44 0.00 36.78 2.52
513 515 7.504403 ACAGATGAGAATTCAACGGATATCTT 58.496 34.615 8.44 0.00 36.78 2.40
514 516 7.060383 ACAGATGAGAATTCAACGGATATCT 57.940 36.000 8.44 3.51 36.78 1.98
515 517 8.818141 TTACAGATGAGAATTCAACGGATATC 57.182 34.615 8.44 0.00 36.78 1.63
517 519 9.914131 CTATTACAGATGAGAATTCAACGGATA 57.086 33.333 8.44 0.00 36.78 2.59
518 520 7.875041 CCTATTACAGATGAGAATTCAACGGAT 59.125 37.037 8.44 0.00 36.78 4.18
519 521 7.147724 ACCTATTACAGATGAGAATTCAACGGA 60.148 37.037 8.44 0.00 36.78 4.69
520 522 6.986817 ACCTATTACAGATGAGAATTCAACGG 59.013 38.462 8.44 0.00 36.78 4.44
521 523 8.425577 AACCTATTACAGATGAGAATTCAACG 57.574 34.615 8.44 0.00 36.78 4.10
522 524 9.383519 TGAACCTATTACAGATGAGAATTCAAC 57.616 33.333 8.44 2.04 36.78 3.18
527 529 9.553064 GTCAATGAACCTATTACAGATGAGAAT 57.447 33.333 0.00 0.00 0.00 2.40
528 530 8.539544 TGTCAATGAACCTATTACAGATGAGAA 58.460 33.333 0.00 0.00 0.00 2.87
529 531 7.981789 GTGTCAATGAACCTATTACAGATGAGA 59.018 37.037 0.00 0.00 0.00 3.27
530 532 7.765819 TGTGTCAATGAACCTATTACAGATGAG 59.234 37.037 0.00 0.00 0.00 2.90
531 533 7.549134 GTGTGTCAATGAACCTATTACAGATGA 59.451 37.037 0.00 0.00 0.00 2.92
532 534 7.334171 TGTGTGTCAATGAACCTATTACAGATG 59.666 37.037 0.00 0.00 0.00 2.90
533 535 7.334421 GTGTGTGTCAATGAACCTATTACAGAT 59.666 37.037 0.00 0.00 0.00 2.90
534 536 6.649141 GTGTGTGTCAATGAACCTATTACAGA 59.351 38.462 0.00 0.00 0.00 3.41
535 537 6.426633 TGTGTGTGTCAATGAACCTATTACAG 59.573 38.462 0.00 0.00 0.00 2.74
536 538 6.292150 TGTGTGTGTCAATGAACCTATTACA 58.708 36.000 0.00 0.00 0.00 2.41
537 539 6.795098 TGTGTGTGTCAATGAACCTATTAC 57.205 37.500 0.00 0.00 0.00 1.89
538 540 7.994425 AATGTGTGTGTCAATGAACCTATTA 57.006 32.000 0.00 0.00 0.00 0.98
539 541 6.899393 AATGTGTGTGTCAATGAACCTATT 57.101 33.333 0.00 0.00 0.00 1.73
540 542 6.265196 ACAAATGTGTGTGTCAATGAACCTAT 59.735 34.615 0.00 0.00 36.31 2.57
541 543 5.592282 ACAAATGTGTGTGTCAATGAACCTA 59.408 36.000 0.00 0.00 36.31 3.08
542 544 4.402155 ACAAATGTGTGTGTCAATGAACCT 59.598 37.500 0.00 0.00 36.31 3.50
543 545 4.681744 ACAAATGTGTGTGTCAATGAACC 58.318 39.130 0.00 0.00 36.31 3.62
558 560 5.885912 ACTAACCAAGAACAGACACAAATGT 59.114 36.000 0.00 0.00 43.71 2.71
559 561 6.377327 ACTAACCAAGAACAGACACAAATG 57.623 37.500 0.00 0.00 0.00 2.32
560 562 8.514330 TTTACTAACCAAGAACAGACACAAAT 57.486 30.769 0.00 0.00 0.00 2.32
561 563 7.925043 TTTACTAACCAAGAACAGACACAAA 57.075 32.000 0.00 0.00 0.00 2.83
562 564 7.925043 TTTTACTAACCAAGAACAGACACAA 57.075 32.000 0.00 0.00 0.00 3.33
563 565 7.825270 TCTTTTTACTAACCAAGAACAGACACA 59.175 33.333 0.00 0.00 0.00 3.72
564 566 8.205131 TCTTTTTACTAACCAAGAACAGACAC 57.795 34.615 0.00 0.00 0.00 3.67
565 567 8.795842 TTCTTTTTACTAACCAAGAACAGACA 57.204 30.769 0.00 0.00 31.70 3.41
611 613 9.302345 CACTTAGTTGAGAGCTAAATTCGAATA 57.698 33.333 11.83 0.00 0.00 1.75
612 614 8.035394 TCACTTAGTTGAGAGCTAAATTCGAAT 58.965 33.333 4.39 4.39 0.00 3.34
613 615 7.375834 TCACTTAGTTGAGAGCTAAATTCGAA 58.624 34.615 0.00 0.00 0.00 3.71
614 616 6.920817 TCACTTAGTTGAGAGCTAAATTCGA 58.079 36.000 0.00 0.00 0.00 3.71
615 617 6.254589 CCTCACTTAGTTGAGAGCTAAATTCG 59.745 42.308 11.47 0.00 45.19 3.34
616 618 7.064016 CACCTCACTTAGTTGAGAGCTAAATTC 59.936 40.741 11.47 0.00 45.19 2.17
617 619 6.876257 CACCTCACTTAGTTGAGAGCTAAATT 59.124 38.462 11.47 0.00 45.19 1.82
618 620 6.014156 ACACCTCACTTAGTTGAGAGCTAAAT 60.014 38.462 11.47 0.00 45.19 1.40
619 621 5.304614 ACACCTCACTTAGTTGAGAGCTAAA 59.695 40.000 11.47 0.00 45.19 1.85
620 622 4.833380 ACACCTCACTTAGTTGAGAGCTAA 59.167 41.667 11.47 0.00 45.19 3.09
621 623 4.408276 ACACCTCACTTAGTTGAGAGCTA 58.592 43.478 11.47 0.00 45.19 3.32
622 624 3.235200 ACACCTCACTTAGTTGAGAGCT 58.765 45.455 11.47 0.00 45.19 4.09
623 625 3.669251 ACACCTCACTTAGTTGAGAGC 57.331 47.619 11.47 0.00 45.19 4.09
624 626 5.461032 AGAACACCTCACTTAGTTGAGAG 57.539 43.478 11.47 3.15 45.19 3.20
625 627 5.871396 AAGAACACCTCACTTAGTTGAGA 57.129 39.130 11.47 0.00 45.19 3.27
626 628 6.284459 AGAAAGAACACCTCACTTAGTTGAG 58.716 40.000 5.31 5.31 42.46 3.02
627 629 6.235231 AGAAAGAACACCTCACTTAGTTGA 57.765 37.500 0.00 0.00 0.00 3.18
628 630 6.316390 ACAAGAAAGAACACCTCACTTAGTTG 59.684 38.462 0.00 0.00 0.00 3.16
629 631 6.415573 ACAAGAAAGAACACCTCACTTAGTT 58.584 36.000 0.00 0.00 0.00 2.24
630 632 5.990668 ACAAGAAAGAACACCTCACTTAGT 58.009 37.500 0.00 0.00 0.00 2.24
631 633 6.927294 AACAAGAAAGAACACCTCACTTAG 57.073 37.500 0.00 0.00 0.00 2.18
632 634 7.497909 CCTAAACAAGAAAGAACACCTCACTTA 59.502 37.037 0.00 0.00 0.00 2.24
633 635 6.318900 CCTAAACAAGAAAGAACACCTCACTT 59.681 38.462 0.00 0.00 0.00 3.16
634 636 5.823045 CCTAAACAAGAAAGAACACCTCACT 59.177 40.000 0.00 0.00 0.00 3.41
635 637 5.505819 GCCTAAACAAGAAAGAACACCTCAC 60.506 44.000 0.00 0.00 0.00 3.51
636 638 4.578928 GCCTAAACAAGAAAGAACACCTCA 59.421 41.667 0.00 0.00 0.00 3.86
637 639 4.822350 AGCCTAAACAAGAAAGAACACCTC 59.178 41.667 0.00 0.00 0.00 3.85
638 640 4.793201 AGCCTAAACAAGAAAGAACACCT 58.207 39.130 0.00 0.00 0.00 4.00
639 641 6.628919 TTAGCCTAAACAAGAAAGAACACC 57.371 37.500 0.00 0.00 0.00 4.16
640 642 9.608617 GTTATTAGCCTAAACAAGAAAGAACAC 57.391 33.333 0.00 0.00 0.00 3.32
641 643 9.344772 TGTTATTAGCCTAAACAAGAAAGAACA 57.655 29.630 0.00 0.00 30.54 3.18
644 646 9.733556 TCATGTTATTAGCCTAAACAAGAAAGA 57.266 29.630 0.00 0.00 36.75 2.52
647 649 9.679661 TGATCATGTTATTAGCCTAAACAAGAA 57.320 29.630 0.00 0.00 35.32 2.52
648 650 9.851686 ATGATCATGTTATTAGCCTAAACAAGA 57.148 29.630 7.59 0.00 36.75 3.02
651 653 9.625747 TGAATGATCATGTTATTAGCCTAAACA 57.374 29.630 9.46 0.00 37.51 2.83
653 655 9.288576 CCTGAATGATCATGTTATTAGCCTAAA 57.711 33.333 9.46 0.00 34.37 1.85
654 656 7.391554 GCCTGAATGATCATGTTATTAGCCTAA 59.608 37.037 9.46 0.00 34.37 2.69
655 657 6.881065 GCCTGAATGATCATGTTATTAGCCTA 59.119 38.462 9.46 0.00 34.37 3.93
656 658 5.709164 GCCTGAATGATCATGTTATTAGCCT 59.291 40.000 9.46 0.00 34.37 4.58
657 659 5.105997 GGCCTGAATGATCATGTTATTAGCC 60.106 44.000 9.46 11.49 34.37 3.93
658 660 5.474532 TGGCCTGAATGATCATGTTATTAGC 59.525 40.000 9.46 6.38 34.37 3.09
659 661 7.698506 ATGGCCTGAATGATCATGTTATTAG 57.301 36.000 9.46 0.00 34.37 1.73
660 662 7.524202 GCAATGGCCTGAATGATCATGTTATTA 60.524 37.037 9.46 0.00 34.37 0.98
661 663 6.740401 GCAATGGCCTGAATGATCATGTTATT 60.740 38.462 9.46 0.00 34.37 1.40
662 664 5.279306 GCAATGGCCTGAATGATCATGTTAT 60.279 40.000 9.46 0.00 34.37 1.89
663 665 4.038282 GCAATGGCCTGAATGATCATGTTA 59.962 41.667 9.46 0.00 34.37 2.41
664 666 3.181469 GCAATGGCCTGAATGATCATGTT 60.181 43.478 9.46 0.00 34.37 2.71
665 667 2.364324 GCAATGGCCTGAATGATCATGT 59.636 45.455 9.46 0.00 34.37 3.21
666 668 2.628178 AGCAATGGCCTGAATGATCATG 59.372 45.455 9.46 0.00 42.56 3.07
667 669 2.958818 AGCAATGGCCTGAATGATCAT 58.041 42.857 3.32 1.18 42.56 2.45
668 670 2.447408 AGCAATGGCCTGAATGATCA 57.553 45.000 3.32 0.00 42.56 2.92
669 671 3.814005 AAAGCAATGGCCTGAATGATC 57.186 42.857 3.32 0.00 42.56 2.92
670 672 4.258543 CAAAAAGCAATGGCCTGAATGAT 58.741 39.130 3.32 0.00 42.56 2.45
671 673 3.557475 CCAAAAAGCAATGGCCTGAATGA 60.557 43.478 3.32 0.00 42.56 2.57
672 674 2.745281 CCAAAAAGCAATGGCCTGAATG 59.255 45.455 3.32 0.00 42.56 2.67
673 675 3.062122 CCAAAAAGCAATGGCCTGAAT 57.938 42.857 3.32 0.00 42.56 2.57
674 676 2.547299 CCAAAAAGCAATGGCCTGAA 57.453 45.000 3.32 0.00 42.56 3.02
680 682 0.250381 TGCCAGCCAAAAAGCAATGG 60.250 50.000 0.00 0.00 39.80 3.16
681 683 1.816074 ATGCCAGCCAAAAAGCAATG 58.184 45.000 0.00 0.00 38.99 2.82
682 684 2.429478 GAATGCCAGCCAAAAAGCAAT 58.571 42.857 0.00 0.00 38.99 3.56
683 685 1.873069 CGAATGCCAGCCAAAAAGCAA 60.873 47.619 0.00 0.00 38.99 3.91
684 686 0.319727 CGAATGCCAGCCAAAAAGCA 60.320 50.000 0.00 0.00 40.00 3.91
685 687 0.038343 TCGAATGCCAGCCAAAAAGC 60.038 50.000 0.00 0.00 0.00 3.51
686 688 1.000385 TGTCGAATGCCAGCCAAAAAG 60.000 47.619 0.00 0.00 0.00 2.27
687 689 1.035923 TGTCGAATGCCAGCCAAAAA 58.964 45.000 0.00 0.00 0.00 1.94
688 690 1.000385 CTTGTCGAATGCCAGCCAAAA 60.000 47.619 0.00 0.00 0.00 2.44
689 691 0.597568 CTTGTCGAATGCCAGCCAAA 59.402 50.000 0.00 0.00 0.00 3.28
690 692 1.865788 GCTTGTCGAATGCCAGCCAA 61.866 55.000 0.00 0.00 0.00 4.52
691 693 2.334946 GCTTGTCGAATGCCAGCCA 61.335 57.895 0.00 0.00 0.00 4.75
692 694 2.262471 CTGCTTGTCGAATGCCAGCC 62.262 60.000 0.00 0.00 0.00 4.85
693 695 1.136147 CTGCTTGTCGAATGCCAGC 59.864 57.895 0.00 0.00 0.00 4.85
694 696 1.136147 GCTGCTTGTCGAATGCCAG 59.864 57.895 0.00 0.00 0.00 4.85
695 697 0.961857 ATGCTGCTTGTCGAATGCCA 60.962 50.000 0.00 0.00 0.00 4.92
696 698 0.524816 CATGCTGCTTGTCGAATGCC 60.525 55.000 7.32 0.00 0.00 4.40
697 699 0.524816 CCATGCTGCTTGTCGAATGC 60.525 55.000 13.57 0.00 0.00 3.56
698 700 0.806868 ACCATGCTGCTTGTCGAATG 59.193 50.000 13.57 1.43 0.00 2.67
699 701 2.401583 TACCATGCTGCTTGTCGAAT 57.598 45.000 13.57 0.00 0.00 3.34
700 702 2.009051 CATACCATGCTGCTTGTCGAA 58.991 47.619 13.57 0.00 0.00 3.71
701 703 1.206849 TCATACCATGCTGCTTGTCGA 59.793 47.619 13.57 3.00 0.00 4.20
702 704 1.596260 CTCATACCATGCTGCTTGTCG 59.404 52.381 13.57 3.13 0.00 4.35
703 705 1.945394 CCTCATACCATGCTGCTTGTC 59.055 52.381 13.57 0.00 0.00 3.18
704 706 1.409241 CCCTCATACCATGCTGCTTGT 60.409 52.381 13.57 4.93 0.00 3.16
705 707 1.315690 CCCTCATACCATGCTGCTTG 58.684 55.000 8.44 8.44 0.00 4.01
706 708 0.921896 ACCCTCATACCATGCTGCTT 59.078 50.000 0.00 0.00 0.00 3.91
707 709 0.921896 AACCCTCATACCATGCTGCT 59.078 50.000 0.00 0.00 0.00 4.24
708 710 2.638480 TAACCCTCATACCATGCTGC 57.362 50.000 0.00 0.00 0.00 5.25
709 711 4.630644 AGATAACCCTCATACCATGCTG 57.369 45.455 0.00 0.00 0.00 4.41
710 712 4.262635 CGAAGATAACCCTCATACCATGCT 60.263 45.833 0.00 0.00 0.00 3.79
711 713 3.997021 CGAAGATAACCCTCATACCATGC 59.003 47.826 0.00 0.00 0.00 4.06
712 714 5.468540 TCGAAGATAACCCTCATACCATG 57.531 43.478 0.00 0.00 0.00 3.66
713 715 6.467677 CATTCGAAGATAACCCTCATACCAT 58.532 40.000 3.35 0.00 35.04 3.55
714 716 5.221641 CCATTCGAAGATAACCCTCATACCA 60.222 44.000 3.35 0.00 35.04 3.25
715 717 5.011738 TCCATTCGAAGATAACCCTCATACC 59.988 44.000 3.35 0.00 35.04 2.73
716 718 6.097915 TCCATTCGAAGATAACCCTCATAC 57.902 41.667 3.35 0.00 35.04 2.39
717 719 6.740944 TTCCATTCGAAGATAACCCTCATA 57.259 37.500 3.35 0.00 35.04 2.15
718 720 5.630415 TTCCATTCGAAGATAACCCTCAT 57.370 39.130 3.35 0.00 35.04 2.90
719 721 5.368145 CATTCCATTCGAAGATAACCCTCA 58.632 41.667 3.35 0.00 35.04 3.86
720 722 4.757149 CCATTCCATTCGAAGATAACCCTC 59.243 45.833 3.35 0.00 35.04 4.30
721 723 4.166144 ACCATTCCATTCGAAGATAACCCT 59.834 41.667 3.35 0.00 35.04 4.34
722 724 4.461198 ACCATTCCATTCGAAGATAACCC 58.539 43.478 3.35 0.00 35.04 4.11
723 725 5.469084 GGTACCATTCCATTCGAAGATAACC 59.531 44.000 7.15 0.00 35.04 2.85
724 726 6.202954 CAGGTACCATTCCATTCGAAGATAAC 59.797 42.308 15.94 0.00 35.04 1.89
725 727 6.288294 CAGGTACCATTCCATTCGAAGATAA 58.712 40.000 15.94 0.00 35.04 1.75
726 728 5.741964 GCAGGTACCATTCCATTCGAAGATA 60.742 44.000 15.94 0.00 35.04 1.98
727 729 4.708177 CAGGTACCATTCCATTCGAAGAT 58.292 43.478 15.94 0.00 35.04 2.40
728 730 3.681594 GCAGGTACCATTCCATTCGAAGA 60.682 47.826 15.94 0.00 32.78 2.87
729 731 2.614057 GCAGGTACCATTCCATTCGAAG 59.386 50.000 15.94 0.00 32.78 3.79
730 732 2.639065 GCAGGTACCATTCCATTCGAA 58.361 47.619 15.94 0.00 34.14 3.71
731 733 1.472552 CGCAGGTACCATTCCATTCGA 60.473 52.381 15.94 0.00 0.00 3.71
732 734 0.937304 CGCAGGTACCATTCCATTCG 59.063 55.000 15.94 0.00 0.00 3.34
733 735 0.663153 GCGCAGGTACCATTCCATTC 59.337 55.000 15.94 0.00 0.00 2.67
734 736 0.034574 TGCGCAGGTACCATTCCATT 60.035 50.000 15.94 0.00 0.00 3.16
735 737 0.748005 GTGCGCAGGTACCATTCCAT 60.748 55.000 12.22 0.00 0.00 3.41
736 738 1.376683 GTGCGCAGGTACCATTCCA 60.377 57.895 12.22 2.89 0.00 3.53
737 739 1.078426 AGTGCGCAGGTACCATTCC 60.078 57.895 12.22 0.00 0.00 3.01
738 740 0.391130 TCAGTGCGCAGGTACCATTC 60.391 55.000 12.22 0.00 0.00 2.67
739 741 0.036164 TTCAGTGCGCAGGTACCATT 59.964 50.000 12.22 0.00 0.00 3.16
740 742 0.391661 CTTCAGTGCGCAGGTACCAT 60.392 55.000 12.22 0.00 0.00 3.55
741 743 1.005037 CTTCAGTGCGCAGGTACCA 60.005 57.895 12.22 0.00 0.00 3.25
742 744 2.391389 GCTTCAGTGCGCAGGTACC 61.391 63.158 12.22 2.73 0.00 3.34
743 745 0.951040 AAGCTTCAGTGCGCAGGTAC 60.951 55.000 12.22 0.00 38.13 3.34
744 746 0.950555 CAAGCTTCAGTGCGCAGGTA 60.951 55.000 12.22 0.00 38.13 3.08
745 747 2.111878 AAGCTTCAGTGCGCAGGT 59.888 55.556 12.22 0.00 38.13 4.00
746 748 2.559840 CAAGCTTCAGTGCGCAGG 59.440 61.111 12.22 6.48 38.13 4.85
747 749 2.256591 ACCAAGCTTCAGTGCGCAG 61.257 57.895 12.22 0.00 38.13 5.18
748 750 2.203195 ACCAAGCTTCAGTGCGCA 60.203 55.556 5.66 5.66 38.13 6.09
749 751 2.253452 CACCAAGCTTCAGTGCGC 59.747 61.111 12.03 0.00 38.13 6.09
750 752 1.165907 TTCCACCAAGCTTCAGTGCG 61.166 55.000 17.19 11.99 38.13 5.34
751 753 0.595095 CTTCCACCAAGCTTCAGTGC 59.405 55.000 17.19 0.00 0.00 4.40
760 762 4.096984 GTCAATTATGAGGCTTCCACCAAG 59.903 45.833 0.00 0.00 35.88 3.61
761 763 4.016444 GTCAATTATGAGGCTTCCACCAA 58.984 43.478 0.00 0.00 35.88 3.67
762 764 3.266772 AGTCAATTATGAGGCTTCCACCA 59.733 43.478 0.00 0.00 35.88 4.17
763 765 3.891049 AGTCAATTATGAGGCTTCCACC 58.109 45.455 0.00 0.00 35.88 4.61
764 766 4.943705 TCAAGTCAATTATGAGGCTTCCAC 59.056 41.667 0.00 0.00 35.88 4.02
765 767 4.943705 GTCAAGTCAATTATGAGGCTTCCA 59.056 41.667 0.00 0.00 35.88 3.53
766 768 4.336713 GGTCAAGTCAATTATGAGGCTTCC 59.663 45.833 0.00 0.00 35.88 3.46
767 769 4.943705 TGGTCAAGTCAATTATGAGGCTTC 59.056 41.667 0.00 0.00 35.88 3.86
768 770 4.922206 TGGTCAAGTCAATTATGAGGCTT 58.078 39.130 0.00 0.00 35.88 4.35
769 771 4.574674 TGGTCAAGTCAATTATGAGGCT 57.425 40.909 0.00 0.00 35.88 4.58
770 772 4.883585 TCATGGTCAAGTCAATTATGAGGC 59.116 41.667 0.00 0.00 35.88 4.70
771 773 5.297776 GGTCATGGTCAAGTCAATTATGAGG 59.702 44.000 0.00 0.00 35.88 3.86
772 774 5.882000 TGGTCATGGTCAAGTCAATTATGAG 59.118 40.000 0.00 0.00 35.88 2.90
773 775 5.814481 TGGTCATGGTCAAGTCAATTATGA 58.186 37.500 0.00 0.00 0.00 2.15
774 776 6.500910 CATGGTCATGGTCAAGTCAATTATG 58.499 40.000 3.17 0.00 35.24 1.90
775 777 6.704289 CATGGTCATGGTCAAGTCAATTAT 57.296 37.500 3.17 0.00 35.24 1.28
802 804 4.195334 ATGGAGCCGCCCATGGAC 62.195 66.667 15.22 0.00 44.77 4.02
813 815 2.758089 CGAAGTGGCTGCATGGAGC 61.758 63.158 29.26 29.26 45.96 4.70
814 816 1.376424 ACGAAGTGGCTGCATGGAG 60.376 57.895 10.32 10.32 42.51 3.86
815 817 2.749682 ACGAAGTGGCTGCATGGA 59.250 55.556 0.50 0.00 42.51 3.41
826 828 6.588243 ATTCCAGTGAAGCTTCGACGAAGT 62.588 45.833 31.88 17.95 37.41 3.01
827 829 1.063806 CCAGTGAAGCTTCGACGAAG 58.936 55.000 29.00 29.00 42.03 3.79
828 830 0.671796 TCCAGTGAAGCTTCGACGAA 59.328 50.000 21.11 10.34 0.00 3.85
829 831 0.671796 TTCCAGTGAAGCTTCGACGA 59.328 50.000 21.11 10.94 0.00 4.20
830 832 1.714794 ATTCCAGTGAAGCTTCGACG 58.285 50.000 21.11 11.27 33.05 5.12
831 833 2.416893 GGAATTCCAGTGAAGCTTCGAC 59.583 50.000 20.04 18.47 33.05 4.20
832 834 2.038426 TGGAATTCCAGTGAAGCTTCGA 59.962 45.455 23.63 9.61 42.01 3.71
833 835 2.426522 TGGAATTCCAGTGAAGCTTCG 58.573 47.619 23.63 7.32 42.01 3.79
844 846 4.081198 GCCATAAAACCATGTGGAATTCCA 60.081 41.667 23.63 23.63 45.30 3.53
845 847 4.081198 TGCCATAAAACCATGTGGAATTCC 60.081 41.667 18.17 18.17 38.94 3.01
846 848 5.083533 TGCCATAAAACCATGTGGAATTC 57.916 39.130 5.96 0.00 38.94 2.17
847 849 5.495926 TTGCCATAAAACCATGTGGAATT 57.504 34.783 5.96 3.05 38.94 2.17
848 850 5.430007 CATTGCCATAAAACCATGTGGAAT 58.570 37.500 5.96 0.00 38.94 3.01
849 851 4.829968 CATTGCCATAAAACCATGTGGAA 58.170 39.130 5.96 0.00 38.94 3.53
850 852 3.369261 GCATTGCCATAAAACCATGTGGA 60.369 43.478 5.96 0.00 38.94 4.02
851 853 2.937799 GCATTGCCATAAAACCATGTGG 59.062 45.455 0.00 0.00 42.17 4.17
871 873 6.157211 ACCTGTACGCATAATATAAGACAGC 58.843 40.000 0.00 0.00 33.35 4.40
875 877 7.309377 GGTGGTACCTGTACGCATAATATAAGA 60.309 40.741 14.36 0.00 36.94 2.10
878 880 5.774184 TGGTGGTACCTGTACGCATAATATA 59.226 40.000 14.36 0.00 39.58 0.86
879 881 4.589798 TGGTGGTACCTGTACGCATAATAT 59.410 41.667 14.36 0.00 39.58 1.28
888 890 2.224450 ACTTGCTTGGTGGTACCTGTAC 60.224 50.000 14.36 2.57 39.58 2.90
891 893 1.238439 CACTTGCTTGGTGGTACCTG 58.762 55.000 14.36 0.00 39.58 4.00
894 896 0.310854 GCACACTTGCTTGGTGGTAC 59.689 55.000 8.56 0.00 46.17 3.34
906 908 0.820891 CTTGAGCTGGGTGCACACTT 60.821 55.000 21.89 5.80 45.94 3.16
957 965 5.105310 GGTAGTCAAGATTGCTGACTAGGAA 60.105 44.000 11.79 0.00 43.24 3.36
967 982 0.252197 ACGGGGGTAGTCAAGATTGC 59.748 55.000 0.00 0.00 0.00 3.56
1021 1036 2.158370 TGGAAGAGGACCAGTAGTGTGA 60.158 50.000 0.00 0.00 33.22 3.58
1022 1037 2.248248 TGGAAGAGGACCAGTAGTGTG 58.752 52.381 0.00 0.00 33.22 3.82
1023 1038 2.696526 TGGAAGAGGACCAGTAGTGT 57.303 50.000 0.00 0.00 33.22 3.55
1024 1039 3.772025 AGAATGGAAGAGGACCAGTAGTG 59.228 47.826 0.00 0.00 40.89 2.74
1025 1040 4.067944 AGAATGGAAGAGGACCAGTAGT 57.932 45.455 0.00 0.00 40.89 2.73
1029 1044 7.093156 TGCATATATAGAATGGAAGAGGACCAG 60.093 40.741 0.00 0.00 40.89 4.00
1119 1145 4.382147 GGAGAAGCCCGAGTGATAATATCC 60.382 50.000 0.00 0.00 0.00 2.59
1120 1146 4.464597 AGGAGAAGCCCGAGTGATAATATC 59.535 45.833 0.00 0.00 37.37 1.63
1403 1480 2.306847 CTGTGTTTGGTTAAGGCTGGT 58.693 47.619 0.00 0.00 0.00 4.00
1416 1493 3.944015 GCTTGATATCTGGAGCTGTGTTT 59.056 43.478 14.84 0.00 32.54 2.83
1510 1605 0.323360 TGGTGTTTATGCTCCTGGCC 60.323 55.000 0.00 0.00 40.92 5.36
1516 1611 4.731773 GCACTAGCAATGGTGTTTATGCTC 60.732 45.833 1.95 0.00 45.49 4.26
1530 1628 1.345741 AGAGAACAGCAGCACTAGCAA 59.654 47.619 0.00 0.00 45.49 3.91
1767 1868 0.320073 TAGGCGTTTGAGGACAACCG 60.320 55.000 0.00 0.00 43.00 4.44
1780 1881 1.192428 CTACAGAGGGGTTTAGGCGT 58.808 55.000 0.00 0.00 0.00 5.68
1840 1950 8.993424 AGAATGGACTTGAGTATTGGTATAAGT 58.007 33.333 0.00 0.00 0.00 2.24
2381 2494 1.534595 GCATCTGCTGTTGCTATAGGC 59.465 52.381 16.73 0.00 40.48 3.93
2440 2553 7.386025 TCTTCAGAAGTATTATCAATGCCATCG 59.614 37.037 10.09 0.00 0.00 3.84
2531 2644 2.215196 GGTAACAGCTCCAACGTTTGA 58.785 47.619 0.00 0.00 0.00 2.69
2785 2911 1.877443 TCAAGCTTTTTCACCGCTACC 59.123 47.619 0.00 0.00 32.90 3.18
2791 2917 2.407090 GCACCATCAAGCTTTTTCACC 58.593 47.619 0.00 0.00 0.00 4.02
3290 3416 4.753233 CTTCCGGATATGATCTCCATCAC 58.247 47.826 4.15 0.00 42.05 3.06
4009 4176 4.513442 CCGTCTTCAACCTGGATTCATTA 58.487 43.478 0.00 0.00 0.00 1.90
4068 4235 7.461749 ACATCGAGTGAATTTATATGGGGAAT 58.538 34.615 0.00 0.00 0.00 3.01
4069 4236 6.837312 ACATCGAGTGAATTTATATGGGGAA 58.163 36.000 0.00 0.00 0.00 3.97
4136 4303 9.249457 CAATCTCCAAGAAACTTAAAAGGAAAC 57.751 33.333 0.00 0.00 0.00 2.78
4144 4311 9.219603 CATCACTACAATCTCCAAGAAACTTAA 57.780 33.333 0.00 0.00 0.00 1.85
4174 4341 3.501062 TGCTGAATCTGAAACAAGAGCTG 59.499 43.478 0.00 0.00 0.00 4.24
4182 4349 9.065871 GTTTATGTAACATGCTGAATCTGAAAC 57.934 33.333 0.00 0.00 36.71 2.78
4194 4361 5.092781 CCGTTCCTTGTTTATGTAACATGC 58.907 41.667 0.00 0.00 45.72 4.06
4215 4382 0.244450 AACAGTGGCAATGCATTCCG 59.756 50.000 15.76 0.04 0.00 4.30
4216 4383 3.806625 ATAACAGTGGCAATGCATTCC 57.193 42.857 15.76 14.02 0.00 3.01
4217 4384 4.266029 CGAAATAACAGTGGCAATGCATTC 59.734 41.667 15.76 12.48 0.00 2.67
4320 4488 3.919223 ACAACACCTTCTCGTCTACTC 57.081 47.619 0.00 0.00 0.00 2.59
4341 4509 9.113838 GGTTATGAATGTCACTGTCATCTTTAT 57.886 33.333 0.00 0.00 34.01 1.40
4405 4581 3.514777 TCAGCGTGGACTGAATGTC 57.485 52.632 0.00 0.00 43.59 3.06
4428 4604 1.435408 GGAGGATGCTTCTTCGCTGC 61.435 60.000 5.76 0.00 0.00 5.25
4463 4639 5.589831 AGGATGCTTATTAAAACCCAAGGT 58.410 37.500 0.00 0.00 37.65 3.50
4558 4734 6.380846 ACATATGCAAGCAATAGAAAGGGAAA 59.619 34.615 1.58 0.00 0.00 3.13
4559 4735 5.893255 ACATATGCAAGCAATAGAAAGGGAA 59.107 36.000 1.58 0.00 0.00 3.97
4560 4736 5.448654 ACATATGCAAGCAATAGAAAGGGA 58.551 37.500 1.58 0.00 0.00 4.20
4567 4743 7.198306 TCATCAGAACATATGCAAGCAATAG 57.802 36.000 1.58 0.00 0.00 1.73
4570 4746 5.900865 TTCATCAGAACATATGCAAGCAA 57.099 34.783 1.58 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.