Multiple sequence alignment - TraesCS2A01G503100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G503100 chr2A 100.000 2602 0 0 1 2602 732579319 732581920 0.000000e+00 4806.0
1 TraesCS2A01G503100 chr2A 80.288 695 86 32 1001 1684 731379423 731380077 6.510000e-131 477.0
2 TraesCS2A01G503100 chr2D 90.271 2652 113 57 1 2597 598711722 598714283 0.000000e+00 3334.0
3 TraesCS2A01G503100 chr2D 77.650 698 93 37 1001 1684 597322519 597323167 1.470000e-97 366.0
4 TraesCS2A01G503100 chr2B 89.480 2633 118 58 1 2560 726544796 726547342 0.000000e+00 3181.0
5 TraesCS2A01G503100 chr2B 81.407 597 72 19 1001 1590 726135846 726136410 3.950000e-123 451.0
6 TraesCS2A01G503100 chr7D 89.474 76 8 0 1012 1087 93949371 93949296 2.130000e-16 97.1
7 TraesCS2A01G503100 chr7D 89.474 76 8 0 1012 1087 94005564 94005639 2.130000e-16 97.1
8 TraesCS2A01G503100 chr7B 89.474 76 8 0 1012 1087 47737281 47737356 2.130000e-16 97.1
9 TraesCS2A01G503100 chr6D 88.000 75 9 0 1012 1086 443741338 443741264 3.570000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G503100 chr2A 732579319 732581920 2601 False 4806 4806 100.000 1 2602 1 chr2A.!!$F2 2601
1 TraesCS2A01G503100 chr2A 731379423 731380077 654 False 477 477 80.288 1001 1684 1 chr2A.!!$F1 683
2 TraesCS2A01G503100 chr2D 598711722 598714283 2561 False 3334 3334 90.271 1 2597 1 chr2D.!!$F2 2596
3 TraesCS2A01G503100 chr2D 597322519 597323167 648 False 366 366 77.650 1001 1684 1 chr2D.!!$F1 683
4 TraesCS2A01G503100 chr2B 726544796 726547342 2546 False 3181 3181 89.480 1 2560 1 chr2B.!!$F2 2559
5 TraesCS2A01G503100 chr2B 726135846 726136410 564 False 451 451 81.407 1001 1590 1 chr2B.!!$F1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.036875 AAAAAGGAGGAGAGGCACCG 59.963 55.0 0.0 0.0 0.0 4.94 F
364 410 0.524862 GGCCTCAAACATCACTGCTG 59.475 55.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1269 0.031857 CATCCCAAAGCGCAAACACA 59.968 50.0 11.47 0.0 0.00 3.72 R
2184 2305 0.032678 ACATGGAGATGCGTCCGATC 59.967 55.0 1.23 0.0 39.81 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.036875 AAAAAGGAGGAGAGGCACCG 59.963 55.000 0.00 0.00 0.00 4.94
22 23 1.128188 AAAAGGAGGAGAGGCACCGT 61.128 55.000 0.00 0.00 0.00 4.83
78 79 6.148811 TCCGAGTCATTTGTAGGAAATTTCAC 59.851 38.462 19.49 10.59 0.00 3.18
81 82 7.746475 CGAGTCATTTGTAGGAAATTTCACTTC 59.254 37.037 19.49 11.86 0.00 3.01
120 126 8.631695 GCAAATATTAAACATCGAACGTCAAAA 58.368 29.630 0.00 0.00 0.00 2.44
123 129 9.755064 AATATTAAACATCGAACGTCAAAAGAG 57.245 29.630 0.00 0.00 0.00 2.85
154 162 3.258872 TCTTTTGGCTGAAACATGGATGG 59.741 43.478 0.00 0.00 0.00 3.51
156 164 0.971959 TGGCTGAAACATGGATGGCC 60.972 55.000 0.00 0.00 38.67 5.36
341 361 2.565834 ACATCAAGTAACTGGCCTACGT 59.434 45.455 3.32 0.00 0.00 3.57
343 363 1.076332 CAAGTAACTGGCCTACGTGC 58.924 55.000 3.32 0.00 0.00 5.34
363 409 0.957395 CGGCCTCAAACATCACTGCT 60.957 55.000 0.00 0.00 0.00 4.24
364 410 0.524862 GGCCTCAAACATCACTGCTG 59.475 55.000 0.00 0.00 0.00 4.41
365 411 1.242076 GCCTCAAACATCACTGCTGT 58.758 50.000 0.00 0.00 0.00 4.40
366 412 2.426522 GCCTCAAACATCACTGCTGTA 58.573 47.619 0.00 0.00 0.00 2.74
367 413 2.160417 GCCTCAAACATCACTGCTGTAC 59.840 50.000 0.00 0.00 0.00 2.90
368 414 3.402110 CCTCAAACATCACTGCTGTACA 58.598 45.455 0.00 0.00 0.00 2.90
369 415 3.814842 CCTCAAACATCACTGCTGTACAA 59.185 43.478 0.00 0.00 0.00 2.41
370 416 4.319766 CCTCAAACATCACTGCTGTACAAC 60.320 45.833 0.00 0.00 0.00 3.32
371 417 4.450976 TCAAACATCACTGCTGTACAACT 58.549 39.130 0.00 0.00 0.00 3.16
372 418 4.511454 TCAAACATCACTGCTGTACAACTC 59.489 41.667 0.00 0.00 0.00 3.01
373 419 3.751479 ACATCACTGCTGTACAACTCA 57.249 42.857 0.00 0.00 0.00 3.41
374 420 4.071961 ACATCACTGCTGTACAACTCAA 57.928 40.909 0.00 0.00 0.00 3.02
375 421 4.450976 ACATCACTGCTGTACAACTCAAA 58.549 39.130 0.00 0.00 0.00 2.69
376 422 4.881273 ACATCACTGCTGTACAACTCAAAA 59.119 37.500 0.00 0.00 0.00 2.44
377 423 5.356751 ACATCACTGCTGTACAACTCAAAAA 59.643 36.000 0.00 0.00 0.00 1.94
468 517 1.595093 GGCCAGATGTTCCAAACCCG 61.595 60.000 0.00 0.00 0.00 5.28
511 566 2.205074 CTGCCATGCGACCTTAACTAG 58.795 52.381 0.00 0.00 0.00 2.57
541 596 2.049802 AAGGTCGCACCGTACGTG 60.050 61.111 15.21 13.20 44.90 4.49
620 682 5.888724 CGTACCTGTATCCATCCATCTATCT 59.111 44.000 0.00 0.00 0.00 1.98
621 683 7.054751 CGTACCTGTATCCATCCATCTATCTA 58.945 42.308 0.00 0.00 0.00 1.98
622 684 7.721842 CGTACCTGTATCCATCCATCTATCTAT 59.278 40.741 0.00 0.00 0.00 1.98
623 685 9.073475 GTACCTGTATCCATCCATCTATCTATC 57.927 40.741 0.00 0.00 0.00 2.08
752 823 2.425312 ACTGAGACACTGATCGATCCAC 59.575 50.000 22.31 9.12 0.00 4.02
779 850 2.476241 TCAATGTCACGATATCGCATGC 59.524 45.455 24.59 7.91 44.43 4.06
963 1042 3.858225 GCCGGGTAGGGTAGCCAC 61.858 72.222 14.62 9.17 46.50 5.01
1100 1179 1.717645 GTACGTCCGCAAACTGTACTG 59.282 52.381 0.00 0.00 34.15 2.74
1138 1217 1.414919 ACCTCTGTCGGTGCAGTTTTA 59.585 47.619 0.00 0.00 37.70 1.52
1143 1222 1.265635 TGTCGGTGCAGTTTTATGTGC 59.734 47.619 0.00 0.00 40.29 4.57
1173 1269 3.849911 ACGATCGACATGTTCTGATGTT 58.150 40.909 24.34 0.00 36.67 2.71
1183 1279 1.780860 GTTCTGATGTTGTGTTTGCGC 59.219 47.619 0.00 0.00 0.00 6.09
1190 1286 0.179124 GTTGTGTTTGCGCTTTGGGA 60.179 50.000 9.73 0.00 0.00 4.37
1203 1299 3.521765 TTGGGATGTGGTGGTGGGC 62.522 63.158 0.00 0.00 0.00 5.36
1320 1416 2.895424 CGCACCAACTTCCCCTCCT 61.895 63.158 0.00 0.00 0.00 3.69
1321 1417 1.002011 GCACCAACTTCCCCTCCTC 60.002 63.158 0.00 0.00 0.00 3.71
1322 1418 1.685820 CACCAACTTCCCCTCCTCC 59.314 63.158 0.00 0.00 0.00 4.30
1635 1739 1.142748 GACCATCGTCCAGCCAGAG 59.857 63.158 0.00 0.00 32.40 3.35
1674 1778 0.250640 CTAGCCAGGCCATGTCCATC 60.251 60.000 8.22 0.00 0.00 3.51
1713 1821 2.416432 CCCTTCGTCTCTCCCGACC 61.416 68.421 0.00 0.00 33.41 4.79
1716 1824 1.658686 CTTCGTCTCTCCCGACCTGG 61.659 65.000 0.00 0.00 33.41 4.45
1791 1903 0.249120 TATCCATCCATTAGCCGCCG 59.751 55.000 0.00 0.00 0.00 6.46
1818 1930 2.977772 TCATCGGCACATGTCATGTA 57.022 45.000 18.00 3.40 42.70 2.29
1819 1931 2.549926 TCATCGGCACATGTCATGTAC 58.450 47.619 18.00 12.60 42.70 2.90
1885 1997 3.642778 ATGGCCTTGTCGTCGTCGG 62.643 63.158 3.32 0.00 37.69 4.79
1935 2047 1.069358 CCTTTCCCTAGGATCGTGCTC 59.931 57.143 11.48 0.00 37.50 4.26
1947 2059 3.786586 GTGCTCTGCTGCGTCTGC 61.787 66.667 0.00 0.00 43.20 4.26
2023 2135 3.820467 TCATGATGTGAAAACTGTGTCCC 59.180 43.478 0.00 0.00 32.78 4.46
2072 2186 1.096416 CGTCGTAGCCTCCTCTCTTT 58.904 55.000 0.00 0.00 0.00 2.52
2184 2305 1.835483 GACGCTTGCATGGCCGATAG 61.835 60.000 0.00 0.00 0.00 2.08
2259 2380 2.775960 TGAGCAGTCAAGATGGATGGAT 59.224 45.455 0.00 0.00 0.00 3.41
2268 2389 8.415553 CAGTCAAGATGGATGGATAGATAGATC 58.584 40.741 0.00 0.00 0.00 2.75
2274 2395 4.211125 GGATGGATAGATAGATCGCAGGA 58.789 47.826 0.00 0.00 0.00 3.86
2280 2401 2.298610 AGATAGATCGCAGGACGTCAA 58.701 47.619 18.91 0.00 44.19 3.18
2295 2416 2.894307 GTCAAGGACGAAATTTCCGG 57.106 50.000 12.54 0.00 38.29 5.14
2296 2417 1.467342 GTCAAGGACGAAATTTCCGGG 59.533 52.381 12.54 1.55 38.29 5.73
2297 2418 1.348366 TCAAGGACGAAATTTCCGGGA 59.652 47.619 12.54 0.00 38.29 5.14
2298 2419 1.737793 CAAGGACGAAATTTCCGGGAG 59.262 52.381 12.54 0.83 38.29 4.30
2332 2453 1.478105 GTGGCTAAGCAAAATCAGGGG 59.522 52.381 0.00 0.00 0.00 4.79
2333 2454 1.357420 TGGCTAAGCAAAATCAGGGGA 59.643 47.619 0.00 0.00 0.00 4.81
2334 2455 2.027385 GGCTAAGCAAAATCAGGGGAG 58.973 52.381 0.00 0.00 0.00 4.30
2335 2456 2.357154 GGCTAAGCAAAATCAGGGGAGA 60.357 50.000 0.00 0.00 0.00 3.71
2336 2457 3.356290 GCTAAGCAAAATCAGGGGAGAA 58.644 45.455 0.00 0.00 0.00 2.87
2337 2458 3.129462 GCTAAGCAAAATCAGGGGAGAAC 59.871 47.826 0.00 0.00 0.00 3.01
2338 2459 2.978156 AGCAAAATCAGGGGAGAACA 57.022 45.000 0.00 0.00 0.00 3.18
2418 2549 1.746787 CAGCAGCTTGAACATGGCATA 59.253 47.619 0.00 0.00 0.00 3.14
2419 2550 2.361119 CAGCAGCTTGAACATGGCATAT 59.639 45.455 0.00 0.00 0.00 1.78
2439 2570 2.349590 TGTCAGCCATTCGAGTTGATG 58.650 47.619 0.00 0.00 0.00 3.07
2444 2575 1.605710 GCCATTCGAGTTGATGGATGG 59.394 52.381 16.40 10.46 36.31 3.51
2445 2576 2.746142 GCCATTCGAGTTGATGGATGGA 60.746 50.000 16.40 0.00 36.31 3.41
2446 2577 3.748083 CCATTCGAGTTGATGGATGGAT 58.252 45.455 7.94 0.00 36.31 3.41
2447 2578 3.501062 CCATTCGAGTTGATGGATGGATG 59.499 47.826 7.94 0.00 36.31 3.51
2562 2699 4.703093 ACATGCACTGTCAATCATCAATGA 59.297 37.500 0.00 0.00 35.54 2.57
2600 2737 9.507329 ACAATCAAATAGTAGTGATGAAGTTGT 57.493 29.630 0.99 0.00 34.70 3.32
2601 2738 9.764870 CAATCAAATAGTAGTGATGAAGTTGTG 57.235 33.333 0.99 0.00 34.70 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 103 7.416154 TCTCTTTTGACGTTCGATGTTTAAT 57.584 32.000 0.00 0.00 0.00 1.40
111 114 6.944234 AGAGGAATTTTCTCTTTTGACGTT 57.056 33.333 1.00 0.00 38.32 3.99
120 126 5.388654 TCAGCCAAAAGAGGAATTTTCTCT 58.611 37.500 1.00 1.00 42.81 3.10
121 127 5.712152 TCAGCCAAAAGAGGAATTTTCTC 57.288 39.130 0.00 0.00 30.01 2.87
122 128 6.127083 TGTTTCAGCCAAAAGAGGAATTTTCT 60.127 34.615 0.00 0.00 30.01 2.52
123 129 6.048509 TGTTTCAGCCAAAAGAGGAATTTTC 58.951 36.000 0.00 0.00 30.01 2.29
156 164 2.919494 GCCTTTGTCGGCCACAAGG 61.919 63.158 17.49 17.49 45.98 3.61
341 361 1.971167 GTGATGTTTGAGGCCGGCA 60.971 57.895 30.85 4.32 0.00 5.69
343 363 1.926511 GCAGTGATGTTTGAGGCCGG 61.927 60.000 0.00 0.00 0.00 6.13
344 364 0.957395 AGCAGTGATGTTTGAGGCCG 60.957 55.000 0.00 0.00 0.00 6.13
347 367 3.402110 TGTACAGCAGTGATGTTTGAGG 58.598 45.455 20.62 0.00 33.09 3.86
511 566 2.672996 ACCTTGGTGCATGCGACC 60.673 61.111 24.12 24.12 0.00 4.79
514 569 4.465512 GCGACCTTGGTGCATGCG 62.466 66.667 14.09 0.00 0.00 4.73
620 682 1.810755 CGTACGCCCTGCAGATAGATA 59.189 52.381 17.39 0.00 0.00 1.98
621 683 0.598562 CGTACGCCCTGCAGATAGAT 59.401 55.000 17.39 0.00 0.00 1.98
622 684 2.030551 CGTACGCCCTGCAGATAGA 58.969 57.895 17.39 0.00 0.00 1.98
623 685 1.661821 GCGTACGCCCTGCAGATAG 60.662 63.158 29.51 8.02 34.56 2.08
752 823 3.848582 CGATATCGTGACATTGATCGGAG 59.151 47.826 17.06 0.00 34.12 4.63
779 850 5.372547 TTCTCGGGATATACGACAATCAG 57.627 43.478 0.00 0.00 36.25 2.90
883 960 2.413837 CCTGCACACCGGCTTATATAC 58.586 52.381 0.00 0.00 34.04 1.47
949 1028 1.120184 GGCTAGTGGCTACCCTACCC 61.120 65.000 0.00 0.00 41.46 3.69
962 1041 2.343758 CACGGTGCACTGGCTAGT 59.656 61.111 28.65 5.21 41.91 2.57
963 1042 3.121030 GCACGGTGCACTGGCTAG 61.121 66.667 28.65 16.14 44.26 3.42
997 1076 3.207669 CTGCAGCTTCGGCATCCC 61.208 66.667 0.00 0.00 44.74 3.85
1100 1179 1.940613 GGTGGAATCGCACAGGAATAC 59.059 52.381 0.00 0.00 0.00 1.89
1138 1217 2.096335 TCGATCGTACGTAACTGCACAT 59.904 45.455 15.94 0.00 34.70 3.21
1143 1222 3.677601 ACATGTCGATCGTACGTAACTG 58.322 45.455 15.94 7.59 34.70 3.16
1144 1223 4.093998 AGAACATGTCGATCGTACGTAACT 59.906 41.667 15.94 6.17 34.70 2.24
1147 1241 3.618150 TCAGAACATGTCGATCGTACGTA 59.382 43.478 15.94 2.34 34.70 3.57
1173 1269 0.031857 CATCCCAAAGCGCAAACACA 59.968 50.000 11.47 0.00 0.00 3.72
1183 1279 0.899717 CCCACCACCACATCCCAAAG 60.900 60.000 0.00 0.00 0.00 2.77
1203 1299 0.248825 CAGATCCTCGTCTTCCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
1663 1767 1.602311 GACATGGAGATGGACATGGC 58.398 55.000 9.17 0.00 46.60 4.40
1674 1778 3.474600 GGATGTTCTGATGGACATGGAG 58.525 50.000 0.00 0.00 0.00 3.86
1791 1903 0.816825 ATGTGCCGATGATGAGCCAC 60.817 55.000 0.00 0.00 0.00 5.01
1795 1907 1.944032 TGACATGTGCCGATGATGAG 58.056 50.000 1.15 0.00 0.00 2.90
1818 1930 0.537188 CTCCGGCTAATGGAGTGTGT 59.463 55.000 0.00 0.00 46.49 3.72
1819 1931 3.369381 CTCCGGCTAATGGAGTGTG 57.631 57.895 0.00 0.00 46.49 3.82
1885 1997 2.103934 TTATTGCAATGCCGCCGC 59.896 55.556 22.27 0.00 0.00 6.53
1947 2059 3.646715 TCCCCTTCCCGTTGCAGG 61.647 66.667 0.00 0.00 0.00 4.85
2058 2170 3.697045 CGAGAGAAAAAGAGAGGAGGCTA 59.303 47.826 0.00 0.00 0.00 3.93
2072 2186 8.035394 AGAGCAAAGATTATACAACGAGAGAAA 58.965 33.333 0.00 0.00 0.00 2.52
2130 2251 2.157738 AGAAAAGATCTGCACTGTGCC 58.842 47.619 28.17 13.78 44.23 5.01
2184 2305 0.032678 ACATGGAGATGCGTCCGATC 59.967 55.000 1.23 0.00 39.81 3.69
2209 2330 1.586564 GCGAGGACAGTTCGATCGG 60.587 63.158 16.41 0.89 40.36 4.18
2250 2371 4.588106 CCTGCGATCTATCTATCCATCCAT 59.412 45.833 0.00 0.00 0.00 3.41
2251 2372 3.956848 CCTGCGATCTATCTATCCATCCA 59.043 47.826 0.00 0.00 0.00 3.41
2252 2373 4.037446 GTCCTGCGATCTATCTATCCATCC 59.963 50.000 0.00 0.00 0.00 3.51
2253 2374 4.260990 CGTCCTGCGATCTATCTATCCATC 60.261 50.000 0.00 0.00 44.77 3.51
2259 2380 3.121738 TGACGTCCTGCGATCTATCTA 57.878 47.619 14.12 0.00 44.77 1.98
2280 2401 0.252197 CCTCCCGGAAATTTCGTCCT 59.748 55.000 0.73 0.00 32.53 3.85
2286 2407 2.971901 ACTGAACCTCCCGGAAATTT 57.028 45.000 0.73 0.00 0.00 1.82
2291 2412 1.553706 GAGTAACTGAACCTCCCGGA 58.446 55.000 0.73 0.00 0.00 5.14
2292 2413 0.535797 GGAGTAACTGAACCTCCCGG 59.464 60.000 0.00 0.00 39.10 5.73
2293 2414 0.172803 CGGAGTAACTGAACCTCCCG 59.827 60.000 0.00 0.00 41.45 5.14
2294 2415 1.067071 CACGGAGTAACTGAACCTCCC 60.067 57.143 0.00 0.00 41.61 4.30
2295 2416 1.067071 CCACGGAGTAACTGAACCTCC 60.067 57.143 0.00 0.00 41.61 4.30
2296 2417 1.672145 GCCACGGAGTAACTGAACCTC 60.672 57.143 0.00 0.00 41.61 3.85
2297 2418 0.320697 GCCACGGAGTAACTGAACCT 59.679 55.000 0.00 0.00 41.61 3.50
2298 2419 0.320697 AGCCACGGAGTAACTGAACC 59.679 55.000 0.00 0.00 41.61 3.62
2299 2420 3.251571 CTTAGCCACGGAGTAACTGAAC 58.748 50.000 0.00 0.00 41.61 3.18
2300 2421 2.353406 GCTTAGCCACGGAGTAACTGAA 60.353 50.000 0.00 0.00 41.61 3.02
2301 2422 1.203994 GCTTAGCCACGGAGTAACTGA 59.796 52.381 0.00 0.00 41.61 3.41
2302 2423 1.067142 TGCTTAGCCACGGAGTAACTG 60.067 52.381 0.29 0.00 41.61 3.16
2303 2424 1.263356 TGCTTAGCCACGGAGTAACT 58.737 50.000 0.29 0.00 41.61 2.24
2304 2425 2.088950 TTGCTTAGCCACGGAGTAAC 57.911 50.000 0.29 0.00 41.61 2.50
2305 2426 2.843401 TTTGCTTAGCCACGGAGTAA 57.157 45.000 0.29 0.00 41.61 2.24
2306 2427 2.843401 TTTTGCTTAGCCACGGAGTA 57.157 45.000 0.29 0.00 41.61 2.59
2332 2453 3.945285 TGGGTCAAACTCTTGTTGTTCTC 59.055 43.478 0.00 0.00 36.39 2.87
2333 2454 3.963129 TGGGTCAAACTCTTGTTGTTCT 58.037 40.909 0.00 0.00 36.39 3.01
2334 2455 4.918810 ATGGGTCAAACTCTTGTTGTTC 57.081 40.909 0.00 0.00 36.39 3.18
2335 2456 4.274950 CGTATGGGTCAAACTCTTGTTGTT 59.725 41.667 0.00 0.00 36.39 2.83
2336 2457 3.813166 CGTATGGGTCAAACTCTTGTTGT 59.187 43.478 0.00 0.00 36.39 3.32
2337 2458 4.062293 TCGTATGGGTCAAACTCTTGTTG 58.938 43.478 0.00 0.00 36.39 3.33
2338 2459 4.202326 ACTCGTATGGGTCAAACTCTTGTT 60.202 41.667 0.00 0.00 38.16 2.83
2395 2526 1.241165 CCATGTTCAAGCTGCTGTCA 58.759 50.000 1.35 0.82 0.00 3.58
2418 2549 2.768253 TCAACTCGAATGGCTGACAT 57.232 45.000 0.00 0.00 43.07 3.06
2419 2550 2.349590 CATCAACTCGAATGGCTGACA 58.650 47.619 0.00 0.00 0.00 3.58
2430 2561 2.916702 TCCATCCATCCATCAACTCG 57.083 50.000 0.00 0.00 0.00 4.18
2439 2570 7.232534 GTCCTGTATCTATCTATCCATCCATCC 59.767 44.444 0.00 0.00 0.00 3.51
2444 2575 7.782168 TGATGGTCCTGTATCTATCTATCCATC 59.218 40.741 0.00 0.00 44.20 3.51
2445 2576 7.656354 TGATGGTCCTGTATCTATCTATCCAT 58.344 38.462 0.00 0.00 35.14 3.41
2446 2577 7.044496 TGATGGTCCTGTATCTATCTATCCA 57.956 40.000 0.00 0.00 0.00 3.41
2447 2578 9.295825 CTATGATGGTCCTGTATCTATCTATCC 57.704 40.741 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.