Multiple sequence alignment - TraesCS2A01G503000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G503000 chr2A 100.000 3810 0 0 1 3810 732571858 732568049 0.000000e+00 7036
1 TraesCS2A01G503000 chr2A 98.889 90 1 0 2408 2497 732569364 732569275 1.100000e-35 161
2 TraesCS2A01G503000 chr2A 98.889 90 1 0 2495 2584 732569451 732569362 1.100000e-35 161
3 TraesCS2A01G503000 chr2A 83.750 160 20 4 1111 1266 49013908 49014065 3.070000e-31 147
4 TraesCS2A01G503000 chr2A 98.507 67 1 0 2349 2415 732569201 732569135 6.690000e-23 119
5 TraesCS2A01G503000 chr2A 98.507 67 1 0 2658 2724 732569510 732569444 6.690000e-23 119
6 TraesCS2A01G503000 chr2D 92.607 2489 132 20 35 2497 598642541 598640079 0.000000e+00 3530
7 TraesCS2A01G503000 chr2D 95.858 845 21 1 2495 3325 598639946 598639102 0.000000e+00 1354
8 TraesCS2A01G503000 chr2D 94.931 434 10 3 3378 3810 598638124 598637702 0.000000e+00 669
9 TraesCS2A01G503000 chr2D 97.630 211 5 0 2514 2724 598640149 598639939 2.800000e-96 363
10 TraesCS2A01G503000 chr2D 97.987 149 3 0 2349 2497 598640005 598639857 3.780000e-65 259
11 TraesCS2A01G503000 chr2D 97.753 89 2 0 1 89 598642629 598642541 1.830000e-33 154
12 TraesCS2A01G503000 chr2D 97.101 69 2 0 2349 2417 598639783 598639715 2.400000e-22 117
13 TraesCS2A01G503000 chr2D 97.727 44 0 1 3323 3365 598639020 598638977 1.470000e-09 75
14 TraesCS2A01G503000 chr2B 89.064 887 53 15 725 1590 726469039 726468176 0.000000e+00 1061
15 TraesCS2A01G503000 chr2B 88.933 759 42 14 1 727 726469832 726469084 0.000000e+00 898
16 TraesCS2A01G503000 chr4D 85.350 157 19 2 1114 1266 351590260 351590416 3.940000e-35 159
17 TraesCS2A01G503000 chr3D 84.375 160 20 3 1111 1266 175348047 175348205 6.590000e-33 152
18 TraesCS2A01G503000 chr5B 83.439 157 22 3 1114 1266 432031913 432032069 3.970000e-30 143
19 TraesCS2A01G503000 chr3B 82.822 163 24 2 1108 1266 192718010 192718172 3.970000e-30 143
20 TraesCS2A01G503000 chr5D 83.444 151 21 2 1120 1266 76234124 76233974 1.850000e-28 137
21 TraesCS2A01G503000 chr4B 82.119 151 23 3 1120 1266 572559599 572559449 4.000000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G503000 chr2A 732568049 732571858 3809 True 1519.200 7036 98.95840 1 3810 5 chr2A.!!$R1 3809
1 TraesCS2A01G503000 chr2D 598637702 598642629 4927 True 815.125 3530 96.44925 1 3810 8 chr2D.!!$R1 3809
2 TraesCS2A01G503000 chr2B 726468176 726469832 1656 True 979.500 1061 88.99850 1 1590 2 chr2B.!!$R1 1589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 412 0.466543 ACCTGTGGTTGACGTGCTAA 59.533 50.000 0.0 0.0 27.29 3.09 F
1472 1621 1.216930 ACTTGGTGGTGCTAAAAGGGT 59.783 47.619 0.0 0.0 0.00 4.34 F
2504 2872 0.036858 GTCAGTCTTGACCAGGGAGC 60.037 60.000 0.0 0.0 46.47 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1659 0.032017 TAGGACTCAGGGGCTCCTTC 60.032 60.0 0.00 0.0 42.67 3.46 R
2516 2884 0.027716 GCATCATCAGCTTCAGCACG 59.972 55.0 0.75 0.0 45.16 5.34 R
3631 4938 0.833949 TGGATACCGCCACATGCTAA 59.166 50.0 0.00 0.0 38.05 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 165 2.810767 GCGGGAAGAAGAAGGACAAGTT 60.811 50.000 0.00 0.00 0.00 2.66
165 226 2.545532 GCGAGAAGACATGCTAGATGCT 60.546 50.000 0.00 0.00 43.37 3.79
216 277 6.437477 GGATGAACAAATTTAAGGGGAAGAGT 59.563 38.462 0.00 0.00 0.00 3.24
218 279 5.472137 TGAACAAATTTAAGGGGAAGAGTCG 59.528 40.000 0.00 0.00 0.00 4.18
220 281 3.646736 AATTTAAGGGGAAGAGTCGGG 57.353 47.619 0.00 0.00 0.00 5.14
221 282 2.330661 TTTAAGGGGAAGAGTCGGGA 57.669 50.000 0.00 0.00 0.00 5.14
228 289 1.071857 GGGAAGAGTCGGGACAAGTTT 59.928 52.381 1.17 0.00 0.00 2.66
237 298 1.433534 GGGACAAGTTTGAGCTCTCG 58.566 55.000 16.19 0.00 0.00 4.04
279 340 4.201891 CGATTGAAGATTGCCAAAGAGGAG 60.202 45.833 0.00 0.00 41.22 3.69
288 349 1.339438 GCCAAAGAGGAGCAGACATCA 60.339 52.381 0.00 0.00 41.22 3.07
331 392 6.183360 CCCTTTGTTTCATAGCTTATGACCTG 60.183 42.308 0.00 0.00 44.32 4.00
332 393 6.375455 CCTTTGTTTCATAGCTTATGACCTGT 59.625 38.462 0.00 0.00 44.32 4.00
333 394 6.741992 TTGTTTCATAGCTTATGACCTGTG 57.258 37.500 0.00 0.00 44.32 3.66
334 395 5.185454 TGTTTCATAGCTTATGACCTGTGG 58.815 41.667 0.00 0.00 44.32 4.17
335 396 5.186198 GTTTCATAGCTTATGACCTGTGGT 58.814 41.667 0.00 0.00 44.32 4.16
336 397 5.435686 TTCATAGCTTATGACCTGTGGTT 57.564 39.130 0.00 0.00 44.32 3.67
337 398 4.769688 TCATAGCTTATGACCTGTGGTTG 58.230 43.478 0.00 0.00 40.09 3.77
338 399 4.469586 TCATAGCTTATGACCTGTGGTTGA 59.530 41.667 0.00 0.00 40.09 3.18
339 400 3.059352 AGCTTATGACCTGTGGTTGAC 57.941 47.619 0.00 0.00 35.25 3.18
340 401 1.732259 GCTTATGACCTGTGGTTGACG 59.268 52.381 0.00 0.00 35.25 4.35
346 412 0.466543 ACCTGTGGTTGACGTGCTAA 59.533 50.000 0.00 0.00 27.29 3.09
835 965 7.982761 TTAATTTCTGCCTGCATGAATTTTT 57.017 28.000 14.13 8.01 0.00 1.94
949 1081 9.730705 TTCTGAAAGATAGAATGTTTCATCACT 57.269 29.630 11.27 0.00 46.90 3.41
1036 1168 7.693952 TGTAAGTTCACACTTTTCAGTCATTC 58.306 34.615 0.00 0.00 40.66 2.67
1058 1190 5.376625 TCCATGTATACAATCTTTCTGCCC 58.623 41.667 10.14 0.00 0.00 5.36
1087 1219 7.438459 AGCTGTAATGATTAGATGTTTCCGTAC 59.562 37.037 0.00 0.00 0.00 3.67
1270 1419 4.574674 TGGGAAGTGCTATGTGAAGATT 57.425 40.909 0.00 0.00 0.00 2.40
1436 1585 6.421485 AGAAGGACGAAGACAGGTATACTAA 58.579 40.000 2.25 0.00 0.00 2.24
1440 1589 4.213513 ACGAAGACAGGTATACTAAGGGG 58.786 47.826 2.25 0.00 0.00 4.79
1472 1621 1.216930 ACTTGGTGGTGCTAAAAGGGT 59.783 47.619 0.00 0.00 0.00 4.34
1473 1622 2.444010 ACTTGGTGGTGCTAAAAGGGTA 59.556 45.455 0.00 0.00 0.00 3.69
1495 1644 1.762957 TCCCGGAGAGCTTATTTGGAG 59.237 52.381 0.73 0.00 0.00 3.86
1503 1652 6.116126 GGAGAGCTTATTTGGAGAGCTTAAA 58.884 40.000 0.00 0.00 46.08 1.52
1507 1656 7.714813 AGAGCTTATTTGGAGAGCTTAAAGATC 59.285 37.037 0.00 0.00 46.08 2.75
1510 1659 8.127954 GCTTATTTGGAGAGCTTAAAGATCTTG 58.872 37.037 9.17 0.00 41.68 3.02
1537 1686 2.027377 GCCCCTGAGTCCTATCATGATG 60.027 54.545 18.72 8.14 0.00 3.07
1538 1687 3.246301 CCCCTGAGTCCTATCATGATGT 58.754 50.000 18.72 0.00 0.00 3.06
1573 1722 7.190920 ACTTTCACAAACTCACTTAGTATGC 57.809 36.000 0.00 0.00 37.50 3.14
1618 1767 1.069358 GTAGGTGCTGCTAGATCCCAC 59.931 57.143 0.00 0.00 0.00 4.61
1627 1776 1.414550 GCTAGATCCCACCTTCCTCAC 59.585 57.143 0.00 0.00 0.00 3.51
1632 1781 2.046892 CCACCTTCCTCACCTGCG 60.047 66.667 0.00 0.00 0.00 5.18
1659 1808 5.957771 TGAGTTAAGCTCCATACCAGATT 57.042 39.130 0.00 0.00 43.48 2.40
1744 1893 2.545952 CGAGTTGTTGAGTGGTAGCTGT 60.546 50.000 0.00 0.00 0.00 4.40
1845 1994 4.576463 GGTTGAGAAAGTCAAGAAGCTCAA 59.424 41.667 0.00 0.00 46.18 3.02
1847 1996 6.404734 GGTTGAGAAAGTCAAGAAGCTCAAAA 60.405 38.462 0.00 0.00 46.18 2.44
1848 1997 6.757897 TGAGAAAGTCAAGAAGCTCAAAAA 57.242 33.333 0.00 0.00 29.64 1.94
1878 2027 4.509600 GGCTAAGAAGTTTGATCCTGATCG 59.490 45.833 2.91 0.00 40.63 3.69
1904 2053 0.169672 CCTTGTGCAGCTTCCAATCG 59.830 55.000 0.00 0.00 0.00 3.34
1905 2054 0.877071 CTTGTGCAGCTTCCAATCGT 59.123 50.000 0.00 0.00 0.00 3.73
1995 2144 1.683790 CCGCAGCACGTAACTAGCAC 61.684 60.000 0.00 0.00 41.42 4.40
2000 2149 0.365859 GCACGTAACTAGCACGCTTC 59.634 55.000 15.28 3.82 43.10 3.86
2001 2150 0.633733 CACGTAACTAGCACGCTTCG 59.366 55.000 15.28 2.87 43.10 3.79
2011 2160 0.947180 GCACGCTTCGGGAACTTGTA 60.947 55.000 0.00 0.00 28.17 2.41
2065 2214 4.851843 TCTTGATGATTCTGGCTGTCATT 58.148 39.130 0.26 0.00 33.03 2.57
2071 2220 4.401022 TGATTCTGGCTGTCATTGAGTTT 58.599 39.130 0.00 0.00 0.00 2.66
2075 2224 1.872952 TGGCTGTCATTGAGTTTGACG 59.127 47.619 0.00 0.00 45.14 4.35
2079 2228 2.217750 TGTCATTGAGTTTGACGTGGG 58.782 47.619 0.00 0.00 45.14 4.61
2082 2231 3.073678 TCATTGAGTTTGACGTGGGATG 58.926 45.455 0.00 0.00 0.00 3.51
2083 2232 1.234821 TTGAGTTTGACGTGGGATGC 58.765 50.000 0.00 0.00 0.00 3.91
2105 2254 2.771089 ACGATTGCAGAAAGAGCTTCA 58.229 42.857 0.00 0.00 36.40 3.02
2106 2255 3.141398 ACGATTGCAGAAAGAGCTTCAA 58.859 40.909 0.00 0.00 36.40 2.69
2107 2256 3.058639 ACGATTGCAGAAAGAGCTTCAAC 60.059 43.478 0.00 0.00 36.40 3.18
2138 2287 2.287308 GCTAATTTGCACAACACCGTGA 60.287 45.455 5.28 0.00 39.34 4.35
2156 2305 1.754803 TGAGGGCGGTATCTACACTTG 59.245 52.381 0.00 0.00 0.00 3.16
2157 2306 2.029623 GAGGGCGGTATCTACACTTGA 58.970 52.381 0.00 0.00 0.00 3.02
2158 2307 2.429610 GAGGGCGGTATCTACACTTGAA 59.570 50.000 0.00 0.00 0.00 2.69
2159 2308 2.167900 AGGGCGGTATCTACACTTGAAC 59.832 50.000 0.00 0.00 0.00 3.18
2160 2309 2.167900 GGGCGGTATCTACACTTGAACT 59.832 50.000 0.00 0.00 0.00 3.01
2161 2310 3.369157 GGGCGGTATCTACACTTGAACTT 60.369 47.826 0.00 0.00 0.00 2.66
2162 2311 3.617263 GGCGGTATCTACACTTGAACTTG 59.383 47.826 0.00 0.00 0.00 3.16
2169 2318 7.329717 GGTATCTACACTTGAACTTGACTTCAG 59.670 40.741 0.00 0.00 31.76 3.02
2170 2319 6.465439 TCTACACTTGAACTTGACTTCAGA 57.535 37.500 0.00 0.00 31.76 3.27
2230 2379 2.690778 GGGCGGCTGTGTTCATGTC 61.691 63.158 9.56 0.00 0.00 3.06
2233 2382 1.639298 GCGGCTGTGTTCATGTCCTC 61.639 60.000 0.00 0.00 0.00 3.71
2305 2454 1.638133 CACGAGGTGCAATCAGAGAG 58.362 55.000 0.00 0.00 0.00 3.20
2309 2458 3.122297 CGAGGTGCAATCAGAGAGATTC 58.878 50.000 0.00 0.00 45.06 2.52
2310 2459 3.122297 GAGGTGCAATCAGAGAGATTCG 58.878 50.000 0.00 0.00 45.06 3.34
2325 2474 5.923204 AGAGATTCGAGCAAAACTGGATAT 58.077 37.500 0.00 0.00 32.63 1.63
2327 2476 5.923204 AGATTCGAGCAAAACTGGATATCT 58.077 37.500 2.05 0.00 32.63 1.98
2330 2647 6.465439 TTCGAGCAAAACTGGATATCTCTA 57.535 37.500 2.05 0.00 32.63 2.43
2334 2651 5.363939 AGCAAAACTGGATATCTCTACAGC 58.636 41.667 2.05 0.20 34.40 4.40
2430 2798 1.743252 GGGAGCTTGCTGGAGTTCG 60.743 63.158 0.00 0.00 0.00 3.95
2431 2799 1.004440 GGAGCTTGCTGGAGTTCGT 60.004 57.895 0.00 0.00 0.00 3.85
2432 2800 1.294659 GGAGCTTGCTGGAGTTCGTG 61.295 60.000 0.00 0.00 0.00 4.35
2433 2801 1.905922 GAGCTTGCTGGAGTTCGTGC 61.906 60.000 0.00 0.00 0.00 5.34
2434 2802 1.963338 GCTTGCTGGAGTTCGTGCT 60.963 57.895 0.00 0.00 0.00 4.40
2435 2803 1.864862 CTTGCTGGAGTTCGTGCTG 59.135 57.895 0.00 0.00 0.00 4.41
2436 2804 0.601046 CTTGCTGGAGTTCGTGCTGA 60.601 55.000 0.00 0.00 0.00 4.26
2437 2805 0.179059 TTGCTGGAGTTCGTGCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
2438 2806 0.601046 TGCTGGAGTTCGTGCTGAAG 60.601 55.000 0.00 0.00 37.23 3.02
2439 2807 1.905922 GCTGGAGTTCGTGCTGAAGC 61.906 60.000 0.00 0.00 37.23 3.86
2440 2808 0.320247 CTGGAGTTCGTGCTGAAGCT 60.320 55.000 3.61 0.00 42.66 3.74
2441 2809 0.601046 TGGAGTTCGTGCTGAAGCTG 60.601 55.000 3.61 0.00 42.66 4.24
2442 2810 0.319900 GGAGTTCGTGCTGAAGCTGA 60.320 55.000 3.61 0.00 42.66 4.26
2443 2811 1.674221 GGAGTTCGTGCTGAAGCTGAT 60.674 52.381 3.61 0.00 42.66 2.90
2444 2812 1.392853 GAGTTCGTGCTGAAGCTGATG 59.607 52.381 3.61 0.00 42.66 3.07
2445 2813 0.179205 GTTCGTGCTGAAGCTGATGC 60.179 55.000 3.61 0.00 42.66 3.91
2455 2823 4.850822 GCTGATGCTGCTGCTAGA 57.149 55.556 17.00 0.00 40.48 2.43
2456 2824 2.607457 GCTGATGCTGCTGCTAGAG 58.393 57.895 17.00 9.91 40.48 2.43
2466 2834 2.306341 GCTGCTAGAGCTGATGTGAA 57.694 50.000 12.10 0.00 45.21 3.18
2467 2835 2.203401 GCTGCTAGAGCTGATGTGAAG 58.797 52.381 12.10 0.00 45.21 3.02
2468 2836 2.159128 GCTGCTAGAGCTGATGTGAAGA 60.159 50.000 12.10 0.00 45.21 2.87
2469 2837 3.678252 GCTGCTAGAGCTGATGTGAAGAA 60.678 47.826 12.10 0.00 45.21 2.52
2470 2838 4.114073 CTGCTAGAGCTGATGTGAAGAAG 58.886 47.826 2.72 0.00 41.71 2.85
2471 2839 3.766051 TGCTAGAGCTGATGTGAAGAAGA 59.234 43.478 2.72 0.00 42.66 2.87
2472 2840 4.111916 GCTAGAGCTGATGTGAAGAAGAC 58.888 47.826 0.00 0.00 38.21 3.01
2473 2841 3.229276 AGAGCTGATGTGAAGAAGACG 57.771 47.619 0.00 0.00 0.00 4.18
2474 2842 1.658095 GAGCTGATGTGAAGAAGACGC 59.342 52.381 0.00 0.00 0.00 5.19
2475 2843 1.001293 AGCTGATGTGAAGAAGACGCA 59.999 47.619 0.00 0.00 0.00 5.24
2476 2844 1.800586 GCTGATGTGAAGAAGACGCAA 59.199 47.619 0.00 0.00 0.00 4.85
2478 2846 1.800586 TGATGTGAAGAAGACGCAAGC 59.199 47.619 0.00 0.00 45.62 4.01
2479 2847 0.792640 ATGTGAAGAAGACGCAAGCG 59.207 50.000 13.50 13.50 46.03 4.68
2480 2848 0.249280 TGTGAAGAAGACGCAAGCGA 60.249 50.000 22.30 0.00 42.83 4.93
2481 2849 0.859232 GTGAAGAAGACGCAAGCGAA 59.141 50.000 22.30 0.00 42.83 4.70
2482 2850 1.136502 GTGAAGAAGACGCAAGCGAAG 60.137 52.381 22.30 0.00 42.83 3.79
2483 2851 0.440371 GAAGAAGACGCAAGCGAAGG 59.560 55.000 22.30 0.00 42.83 3.46
2484 2852 0.249911 AAGAAGACGCAAGCGAAGGT 60.250 50.000 22.30 0.00 42.83 3.50
2485 2853 0.946221 AGAAGACGCAAGCGAAGGTG 60.946 55.000 22.30 0.00 42.83 4.00
2486 2854 1.222115 GAAGACGCAAGCGAAGGTGT 61.222 55.000 22.30 0.00 42.83 4.16
2487 2855 1.222115 AAGACGCAAGCGAAGGTGTC 61.222 55.000 22.30 6.91 43.12 3.67
2488 2856 1.954146 GACGCAAGCGAAGGTGTCA 60.954 57.895 22.30 0.00 42.52 3.58
2489 2857 1.891060 GACGCAAGCGAAGGTGTCAG 61.891 60.000 22.30 0.00 42.52 3.51
2490 2858 1.956170 CGCAAGCGAAGGTGTCAGT 60.956 57.895 9.11 0.00 42.83 3.41
2491 2859 1.862806 GCAAGCGAAGGTGTCAGTC 59.137 57.895 0.00 0.00 39.47 3.51
2492 2860 0.601311 GCAAGCGAAGGTGTCAGTCT 60.601 55.000 0.00 0.00 39.47 3.24
2493 2861 1.871080 CAAGCGAAGGTGTCAGTCTT 58.129 50.000 0.00 0.00 39.47 3.01
2494 2862 1.528586 CAAGCGAAGGTGTCAGTCTTG 59.471 52.381 0.00 0.00 39.47 3.02
2495 2863 1.040646 AGCGAAGGTGTCAGTCTTGA 58.959 50.000 0.00 0.00 36.17 3.02
2504 2872 0.036858 GTCAGTCTTGACCAGGGAGC 60.037 60.000 0.00 0.00 46.47 4.70
2505 2873 0.178921 TCAGTCTTGACCAGGGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
2506 2874 0.689623 CAGTCTTGACCAGGGAGCTT 59.310 55.000 0.00 0.00 0.00 3.74
2507 2875 0.689623 AGTCTTGACCAGGGAGCTTG 59.310 55.000 0.00 0.00 0.00 4.01
2508 2876 0.957888 GTCTTGACCAGGGAGCTTGC 60.958 60.000 0.00 0.00 0.00 4.01
2509 2877 1.130054 TCTTGACCAGGGAGCTTGCT 61.130 55.000 0.00 0.00 0.00 3.91
2510 2878 0.959372 CTTGACCAGGGAGCTTGCTG 60.959 60.000 0.00 0.00 0.00 4.41
2511 2879 2.045536 GACCAGGGAGCTTGCTGG 60.046 66.667 0.00 0.00 42.31 4.85
2512 2880 2.530151 ACCAGGGAGCTTGCTGGA 60.530 61.111 0.00 0.00 40.03 3.86
2513 2881 2.271497 CCAGGGAGCTTGCTGGAG 59.729 66.667 0.00 0.00 39.19 3.86
2514 2882 2.600729 CCAGGGAGCTTGCTGGAGT 61.601 63.158 0.00 0.00 39.19 3.85
2515 2883 1.377994 CAGGGAGCTTGCTGGAGTT 59.622 57.895 0.00 0.00 0.00 3.01
2516 2884 0.676151 CAGGGAGCTTGCTGGAGTTC 60.676 60.000 0.00 0.00 0.00 3.01
2517 2885 1.743252 GGGAGCTTGCTGGAGTTCG 60.743 63.158 0.00 0.00 0.00 3.95
2534 2902 1.648504 TCGTGCTGAAGCTGATGATG 58.351 50.000 3.61 0.00 42.66 3.07
2608 2976 4.452825 CTTCAGATGGAGCTGATGTGAAT 58.547 43.478 12.73 0.00 43.84 2.57
2618 2986 3.570975 AGCTGATGTGAATGAGTTGCAAA 59.429 39.130 0.00 0.00 0.00 3.68
2696 3064 2.545946 GCCAAGAAGGTGATATCTTCGC 59.454 50.000 3.98 0.00 43.75 4.70
2724 3092 0.037447 AAAGAAGCTCAGACCAGGGC 59.963 55.000 0.00 0.00 0.00 5.19
2759 3127 2.203480 TTGAGTGGGCAAGGTGGC 60.203 61.111 0.00 0.00 42.88 5.01
2760 3128 3.067084 TTGAGTGGGCAAGGTGGCA 62.067 57.895 4.09 0.00 45.76 4.92
2765 3133 2.116125 GGGCAAGGTGGCAGAAGT 59.884 61.111 4.09 0.00 45.76 3.01
2840 3208 3.334583 TCTTCATGTGCTAACCTGTCC 57.665 47.619 0.00 0.00 0.00 4.02
2857 3225 2.742053 TGTCCGCTAAGATGCTGTTTTC 59.258 45.455 0.00 0.00 0.00 2.29
2949 3331 8.893219 TGATATGTGTAATTGTCCATTCTCTC 57.107 34.615 0.00 0.00 0.00 3.20
3081 3463 5.136828 TGATTCACCAACCTTTGTACATGT 58.863 37.500 2.69 2.69 0.00 3.21
3100 3482 6.118170 ACATGTATATGCAGCTGAGAAACTT 58.882 36.000 20.43 3.77 37.85 2.66
3102 3484 7.770433 ACATGTATATGCAGCTGAGAAACTTAA 59.230 33.333 20.43 0.00 37.85 1.85
3182 3564 6.259608 CACTATTTGATCCTTGTGTCATCTCC 59.740 42.308 0.00 0.00 0.00 3.71
3222 3604 5.238214 GCCTAGAGCTGATTGGATTGTAAAG 59.762 44.000 0.00 0.00 38.99 1.85
3365 3832 6.931281 CAGATAGGTTCTTGTTCTTGAGTTGA 59.069 38.462 0.00 0.00 29.93 3.18
3366 3833 7.605691 CAGATAGGTTCTTGTTCTTGAGTTGAT 59.394 37.037 0.00 0.00 29.93 2.57
3368 3835 5.684704 AGGTTCTTGTTCTTGAGTTGATGA 58.315 37.500 0.00 0.00 0.00 2.92
3369 3836 6.122277 AGGTTCTTGTTCTTGAGTTGATGAA 58.878 36.000 0.00 0.00 0.00 2.57
3370 3837 6.261826 AGGTTCTTGTTCTTGAGTTGATGAAG 59.738 38.462 0.00 0.00 0.00 3.02
3371 3838 5.679734 TCTTGTTCTTGAGTTGATGAAGC 57.320 39.130 0.00 0.00 0.00 3.86
3372 3839 4.516698 TCTTGTTCTTGAGTTGATGAAGCC 59.483 41.667 0.00 0.00 0.00 4.35
3373 3840 3.819368 TGTTCTTGAGTTGATGAAGCCA 58.181 40.909 0.00 0.00 0.00 4.75
3374 3841 4.401022 TGTTCTTGAGTTGATGAAGCCAT 58.599 39.130 0.00 0.00 35.29 4.40
3375 3842 5.559770 TGTTCTTGAGTTGATGAAGCCATA 58.440 37.500 0.00 0.00 32.09 2.74
3425 4732 3.552273 GCGTCTCACCTCTTCTTTGTGTA 60.552 47.826 0.00 0.00 0.00 2.90
3445 4752 5.237344 GTGTATCAGGTACCATTGCAAGATC 59.763 44.000 15.94 0.00 32.03 2.75
3447 4754 4.574674 TCAGGTACCATTGCAAGATCTT 57.425 40.909 15.94 0.88 0.00 2.40
3448 4755 4.264253 TCAGGTACCATTGCAAGATCTTG 58.736 43.478 27.82 27.82 43.14 3.02
3454 4761 6.753744 GGTACCATTGCAAGATCTTGATTTTC 59.246 38.462 34.43 18.72 42.93 2.29
3508 4815 8.065473 TGCATTATTTGGAAATCACATACAGT 57.935 30.769 0.00 0.00 0.00 3.55
3578 4885 8.472007 ACATGGGTTTAACTCAACTTATTTGA 57.528 30.769 0.39 0.00 42.26 2.69
3591 4898 8.244494 TCAACTTATTTGAGAGTTCTTCATCG 57.756 34.615 0.00 0.00 39.45 3.84
3594 4901 8.245701 ACTTATTTGAGAGTTCTTCATCGAAC 57.754 34.615 0.00 0.00 42.73 3.95
3614 4921 5.464965 AACGCATGTAGTTTAGTGCATAC 57.535 39.130 0.00 0.00 37.44 2.39
3631 4938 8.947055 AGTGCATACATTTTTCTTCAAAAAGT 57.053 26.923 0.00 0.00 43.22 2.66
3698 5005 2.744202 CAACTTCAGGAATTCGGACTGG 59.256 50.000 9.46 0.00 33.19 4.00
3705 5012 1.816835 GGAATTCGGACTGGGGAAAAC 59.183 52.381 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 226 9.277783 CTCTTCTGAACTTCCTTCTCAATTAAA 57.722 33.333 0.00 0.00 0.00 1.52
216 277 1.000955 GAGAGCTCAAACTTGTCCCGA 59.999 52.381 17.77 0.00 0.00 5.14
218 279 1.433534 CGAGAGCTCAAACTTGTCCC 58.566 55.000 17.77 0.00 0.00 4.46
220 281 2.156343 ACCGAGAGCTCAAACTTGTC 57.844 50.000 17.77 1.36 0.00 3.18
221 282 2.891580 TCTACCGAGAGCTCAAACTTGT 59.108 45.455 17.77 6.54 0.00 3.16
228 289 1.678627 GCATCTTCTACCGAGAGCTCA 59.321 52.381 17.77 0.00 31.77 4.26
237 298 3.393472 CAGCCCTGCATCTTCTACC 57.607 57.895 0.00 0.00 0.00 3.18
288 349 1.523758 GGCATCAACTCACCGAAAGT 58.476 50.000 0.00 0.00 0.00 2.66
331 392 8.178964 TCAATATTAAATTAGCACGTCAACCAC 58.821 33.333 0.00 0.00 0.00 4.16
332 393 8.270080 TCAATATTAAATTAGCACGTCAACCA 57.730 30.769 0.00 0.00 0.00 3.67
333 394 9.730420 AATCAATATTAAATTAGCACGTCAACC 57.270 29.630 0.00 0.00 0.00 3.77
670 751 8.629158 CATAGTGCTTTATGTTATTTGGGCTTA 58.371 33.333 0.00 0.00 0.00 3.09
835 965 3.786635 ACAACAAAGGCACGCATTTAAA 58.213 36.364 0.86 0.00 0.00 1.52
930 1062 7.063898 CGTGTTCAGTGATGAAACATTCTATCT 59.936 37.037 0.00 0.00 0.00 1.98
968 1100 3.423154 CGACTCCACCGCCAAAGC 61.423 66.667 0.00 0.00 0.00 3.51
1036 1168 5.132502 TGGGCAGAAAGATTGTATACATGG 58.867 41.667 6.36 0.00 0.00 3.66
1058 1190 7.307042 CGGAAACATCTAATCATTACAGCTCTG 60.307 40.741 0.00 0.00 0.00 3.35
1087 1219 7.726033 ATAGCTCTAGGGAAACATGTATAGG 57.274 40.000 0.00 0.00 0.00 2.57
1211 1344 6.878923 TGTACAAAATAATGAGTGAGGGTCTG 59.121 38.462 0.00 0.00 0.00 3.51
1270 1419 8.262601 TCCTGCCAGATAAGTAAATCATTAGA 57.737 34.615 0.00 0.00 0.00 2.10
1321 1470 1.837090 AGCCTCGTTGGGTTGTCTT 59.163 52.632 0.00 0.00 45.67 3.01
1436 1585 3.462205 ACCAAGTCTGTAAAAGTTCCCCT 59.538 43.478 0.00 0.00 0.00 4.79
1440 1589 4.497507 GCACCACCAAGTCTGTAAAAGTTC 60.498 45.833 0.00 0.00 0.00 3.01
1472 1621 3.971305 TCCAAATAAGCTCTCCGGGAATA 59.029 43.478 0.00 0.00 0.00 1.75
1473 1622 2.777692 TCCAAATAAGCTCTCCGGGAAT 59.222 45.455 0.00 0.00 0.00 3.01
1484 1633 7.800155 AGATCTTTAAGCTCTCCAAATAAGC 57.200 36.000 0.00 0.00 36.27 3.09
1485 1634 9.388506 TCAAGATCTTTAAGCTCTCCAAATAAG 57.611 33.333 4.86 0.00 0.00 1.73
1495 1644 4.574421 GGCTCCTTCAAGATCTTTAAGCTC 59.426 45.833 19.72 12.00 0.00 4.09
1503 1652 1.211456 CAGGGGCTCCTTCAAGATCT 58.789 55.000 0.00 0.00 42.67 2.75
1507 1656 0.251634 GACTCAGGGGCTCCTTCAAG 59.748 60.000 0.00 3.17 42.67 3.02
1510 1659 0.032017 TAGGACTCAGGGGCTCCTTC 60.032 60.000 0.00 0.00 42.67 3.46
1573 1722 8.960591 ACTGGATGTAAACTAAGGAATTCATTG 58.039 33.333 15.31 7.92 0.00 2.82
1618 1767 1.001378 CAAAAACGCAGGTGAGGAAGG 60.001 52.381 0.00 0.00 0.00 3.46
1627 1776 3.555518 GAGCTTAACTCAAAAACGCAGG 58.444 45.455 0.00 0.00 45.49 4.85
1718 1867 0.679505 CCACTCAACAACTCGGGAGA 59.320 55.000 2.08 0.00 37.31 3.71
1763 1912 9.604626 CTGCTCACTGTATTTAAAAAGAAGAAG 57.395 33.333 0.00 0.00 0.00 2.85
1795 1944 3.936453 TCCTGAATACATTTGCGTACACC 59.064 43.478 0.00 0.00 0.00 4.16
1798 1947 6.422223 CATCTTCCTGAATACATTTGCGTAC 58.578 40.000 0.00 0.00 0.00 3.67
1845 1994 6.859017 TCAAACTTCTTAGCCGTTTCTTTTT 58.141 32.000 0.00 0.00 0.00 1.94
1847 1996 6.294010 GGATCAAACTTCTTAGCCGTTTCTTT 60.294 38.462 0.00 0.00 0.00 2.52
1848 1997 5.181433 GGATCAAACTTCTTAGCCGTTTCTT 59.819 40.000 0.00 0.00 0.00 2.52
1854 2003 3.861840 TCAGGATCAAACTTCTTAGCCG 58.138 45.455 0.00 0.00 0.00 5.52
1878 2027 2.029518 GCTGCACAAGGGGCAAAC 59.970 61.111 0.00 0.00 41.39 2.93
1904 2053 1.996292 TCAGACTCGCATACAGCAAC 58.004 50.000 0.00 0.00 46.13 4.17
1905 2054 2.741759 TTCAGACTCGCATACAGCAA 57.258 45.000 0.00 0.00 46.13 3.91
1995 2144 1.722011 ATGTACAAGTTCCCGAAGCG 58.278 50.000 0.00 0.00 0.00 4.68
2000 2149 3.267483 CCCAGTTATGTACAAGTTCCCG 58.733 50.000 0.00 0.00 0.00 5.14
2001 2150 3.617284 CCCCAGTTATGTACAAGTTCCC 58.383 50.000 0.00 0.00 0.00 3.97
2011 2160 1.633945 GACAACCTCCCCCAGTTATGT 59.366 52.381 0.00 0.00 0.00 2.29
2065 2214 0.396435 AGCATCCCACGTCAAACTCA 59.604 50.000 0.00 0.00 0.00 3.41
2071 2220 0.821517 AATCGTAGCATCCCACGTCA 59.178 50.000 0.00 0.00 39.18 4.35
2075 2224 0.940126 CTGCAATCGTAGCATCCCAC 59.060 55.000 0.00 0.00 41.82 4.61
2079 2228 3.303001 GCTCTTTCTGCAATCGTAGCATC 60.303 47.826 5.43 0.00 41.82 3.91
2082 2231 2.275318 AGCTCTTTCTGCAATCGTAGC 58.725 47.619 0.00 0.00 0.00 3.58
2083 2232 3.928992 TGAAGCTCTTTCTGCAATCGTAG 59.071 43.478 0.00 0.00 36.71 3.51
2138 2287 2.154567 TCAAGTGTAGATACCGCCCT 57.845 50.000 0.00 0.00 0.00 5.19
2147 2296 6.461648 CCTCTGAAGTCAAGTTCAAGTGTAGA 60.462 42.308 2.18 0.00 36.01 2.59
2148 2297 5.694006 CCTCTGAAGTCAAGTTCAAGTGTAG 59.306 44.000 2.18 0.00 36.01 2.74
2151 2300 4.446371 ACCTCTGAAGTCAAGTTCAAGTG 58.554 43.478 2.18 0.00 36.01 3.16
2156 2305 3.658709 CAGGACCTCTGAAGTCAAGTTC 58.341 50.000 8.55 0.00 46.18 3.01
2157 2306 3.760580 CAGGACCTCTGAAGTCAAGTT 57.239 47.619 8.55 0.00 46.18 2.66
2169 2318 1.064463 TGAAATGCCCATCAGGACCTC 60.064 52.381 0.00 0.00 38.24 3.85
2170 2319 1.002069 TGAAATGCCCATCAGGACCT 58.998 50.000 0.00 0.00 38.24 3.85
2233 2382 6.805271 GGATCACATCATCAAACTCAAACTTG 59.195 38.462 0.00 0.00 0.00 3.16
2242 2391 8.310406 TGATAATACGGATCACATCATCAAAC 57.690 34.615 0.00 0.00 0.00 2.93
2254 2403 3.197766 TGGCCCTCATGATAATACGGATC 59.802 47.826 0.00 0.00 0.00 3.36
2301 2450 3.589988 TCCAGTTTTGCTCGAATCTCTC 58.410 45.455 0.00 0.00 0.00 3.20
2305 2454 5.988561 AGAGATATCCAGTTTTGCTCGAATC 59.011 40.000 0.00 0.00 0.00 2.52
2308 2457 5.359860 TGTAGAGATATCCAGTTTTGCTCGA 59.640 40.000 0.00 0.00 0.00 4.04
2309 2458 5.592054 TGTAGAGATATCCAGTTTTGCTCG 58.408 41.667 0.00 0.00 0.00 5.03
2310 2459 5.465056 GCTGTAGAGATATCCAGTTTTGCTC 59.535 44.000 0.00 0.00 0.00 4.26
2334 2651 0.252479 AAGCTCCACATCAGCTCCAG 59.748 55.000 0.00 0.00 46.96 3.86
2438 2806 2.607457 CTCTAGCAGCAGCATCAGC 58.393 57.895 3.17 0.00 45.49 4.26
2448 2816 3.797451 TCTTCACATCAGCTCTAGCAG 57.203 47.619 4.54 0.00 45.16 4.24
2449 2817 3.766051 TCTTCTTCACATCAGCTCTAGCA 59.234 43.478 4.54 0.00 45.16 3.49
2450 2818 4.111916 GTCTTCTTCACATCAGCTCTAGC 58.888 47.826 0.00 0.00 42.49 3.42
2451 2819 4.350346 CGTCTTCTTCACATCAGCTCTAG 58.650 47.826 0.00 0.00 0.00 2.43
2452 2820 3.428180 GCGTCTTCTTCACATCAGCTCTA 60.428 47.826 0.00 0.00 0.00 2.43
2453 2821 2.673610 GCGTCTTCTTCACATCAGCTCT 60.674 50.000 0.00 0.00 0.00 4.09
2454 2822 1.658095 GCGTCTTCTTCACATCAGCTC 59.342 52.381 0.00 0.00 0.00 4.09
2455 2823 1.001293 TGCGTCTTCTTCACATCAGCT 59.999 47.619 0.00 0.00 0.00 4.24
2456 2824 1.432514 TGCGTCTTCTTCACATCAGC 58.567 50.000 0.00 0.00 0.00 4.26
2457 2825 2.159734 GCTTGCGTCTTCTTCACATCAG 60.160 50.000 0.00 0.00 0.00 2.90
2458 2826 1.800586 GCTTGCGTCTTCTTCACATCA 59.199 47.619 0.00 0.00 0.00 3.07
2459 2827 1.201855 CGCTTGCGTCTTCTTCACATC 60.202 52.381 6.86 0.00 0.00 3.06
2460 2828 0.792640 CGCTTGCGTCTTCTTCACAT 59.207 50.000 6.86 0.00 0.00 3.21
2461 2829 0.249280 TCGCTTGCGTCTTCTTCACA 60.249 50.000 14.70 0.00 0.00 3.58
2462 2830 0.859232 TTCGCTTGCGTCTTCTTCAC 59.141 50.000 14.70 0.00 0.00 3.18
2463 2831 1.139989 CTTCGCTTGCGTCTTCTTCA 58.860 50.000 14.70 0.00 0.00 3.02
2464 2832 0.440371 CCTTCGCTTGCGTCTTCTTC 59.560 55.000 14.70 0.00 0.00 2.87
2465 2833 0.249911 ACCTTCGCTTGCGTCTTCTT 60.250 50.000 14.70 0.00 0.00 2.52
2466 2834 0.946221 CACCTTCGCTTGCGTCTTCT 60.946 55.000 14.70 0.00 0.00 2.85
2467 2835 1.222115 ACACCTTCGCTTGCGTCTTC 61.222 55.000 14.70 0.00 0.00 2.87
2468 2836 1.222115 GACACCTTCGCTTGCGTCTT 61.222 55.000 14.70 0.00 0.00 3.01
2469 2837 1.664965 GACACCTTCGCTTGCGTCT 60.665 57.895 14.70 0.00 0.00 4.18
2470 2838 1.891060 CTGACACCTTCGCTTGCGTC 61.891 60.000 14.70 4.69 0.00 5.19
2471 2839 1.956170 CTGACACCTTCGCTTGCGT 60.956 57.895 14.70 0.00 0.00 5.24
2472 2840 1.891060 GACTGACACCTTCGCTTGCG 61.891 60.000 8.87 8.87 0.00 4.85
2473 2841 0.601311 AGACTGACACCTTCGCTTGC 60.601 55.000 0.00 0.00 0.00 4.01
2474 2842 1.528586 CAAGACTGACACCTTCGCTTG 59.471 52.381 0.00 0.00 0.00 4.01
2475 2843 1.412710 TCAAGACTGACACCTTCGCTT 59.587 47.619 0.00 0.00 0.00 4.68
2476 2844 1.040646 TCAAGACTGACACCTTCGCT 58.959 50.000 0.00 0.00 0.00 4.93
2477 2845 3.588277 TCAAGACTGACACCTTCGC 57.412 52.632 0.00 0.00 0.00 4.70
2486 2854 0.178921 AGCTCCCTGGTCAAGACTGA 60.179 55.000 0.00 0.00 0.00 3.41
2487 2855 0.689623 AAGCTCCCTGGTCAAGACTG 59.310 55.000 0.00 0.00 0.00 3.51
2488 2856 0.689623 CAAGCTCCCTGGTCAAGACT 59.310 55.000 0.00 0.00 0.00 3.24
2489 2857 0.957888 GCAAGCTCCCTGGTCAAGAC 60.958 60.000 0.00 0.00 0.00 3.01
2490 2858 1.130054 AGCAAGCTCCCTGGTCAAGA 61.130 55.000 0.00 0.00 0.00 3.02
2491 2859 0.959372 CAGCAAGCTCCCTGGTCAAG 60.959 60.000 5.83 0.00 0.00 3.02
2492 2860 1.073722 CAGCAAGCTCCCTGGTCAA 59.926 57.895 5.83 0.00 0.00 3.18
2493 2861 2.752358 CAGCAAGCTCCCTGGTCA 59.248 61.111 5.83 0.00 0.00 4.02
2494 2862 2.045536 CCAGCAAGCTCCCTGGTC 60.046 66.667 19.47 0.00 42.87 4.02
2495 2863 2.530151 TCCAGCAAGCTCCCTGGT 60.530 61.111 24.11 7.51 46.83 4.00
2497 2865 0.676151 GAACTCCAGCAAGCTCCCTG 60.676 60.000 6.60 6.60 0.00 4.45
2498 2866 1.682257 GAACTCCAGCAAGCTCCCT 59.318 57.895 0.00 0.00 0.00 4.20
2499 2867 1.743252 CGAACTCCAGCAAGCTCCC 60.743 63.158 0.00 0.00 0.00 4.30
2500 2868 1.004440 ACGAACTCCAGCAAGCTCC 60.004 57.895 0.00 0.00 0.00 4.70
2501 2869 1.905922 GCACGAACTCCAGCAAGCTC 61.906 60.000 0.00 0.00 0.00 4.09
2502 2870 1.963338 GCACGAACTCCAGCAAGCT 60.963 57.895 0.00 0.00 0.00 3.74
2503 2871 1.963338 AGCACGAACTCCAGCAAGC 60.963 57.895 0.00 0.00 0.00 4.01
2504 2872 0.601046 TCAGCACGAACTCCAGCAAG 60.601 55.000 0.00 0.00 0.00 4.01
2505 2873 0.179059 TTCAGCACGAACTCCAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
2506 2874 0.601046 CTTCAGCACGAACTCCAGCA 60.601 55.000 0.00 0.00 0.00 4.41
2507 2875 1.905922 GCTTCAGCACGAACTCCAGC 61.906 60.000 0.00 0.00 41.59 4.85
2508 2876 0.320247 AGCTTCAGCACGAACTCCAG 60.320 55.000 0.75 0.00 45.16 3.86
2509 2877 0.601046 CAGCTTCAGCACGAACTCCA 60.601 55.000 0.75 0.00 45.16 3.86
2510 2878 0.319900 TCAGCTTCAGCACGAACTCC 60.320 55.000 0.75 0.00 45.16 3.85
2511 2879 1.392853 CATCAGCTTCAGCACGAACTC 59.607 52.381 0.75 0.00 45.16 3.01
2512 2880 1.001293 TCATCAGCTTCAGCACGAACT 59.999 47.619 0.75 0.00 45.16 3.01
2513 2881 1.432514 TCATCAGCTTCAGCACGAAC 58.567 50.000 0.75 0.00 45.16 3.95
2514 2882 2.004733 CATCATCAGCTTCAGCACGAA 58.995 47.619 0.75 0.00 45.16 3.85
2515 2883 1.648504 CATCATCAGCTTCAGCACGA 58.351 50.000 0.75 0.00 45.16 4.35
2516 2884 0.027716 GCATCATCAGCTTCAGCACG 59.972 55.000 0.75 0.00 45.16 5.34
2517 2885 1.064208 CAGCATCATCAGCTTCAGCAC 59.936 52.381 0.75 0.00 45.16 4.40
2608 2976 0.380378 GCACCTTCGTTTGCAACTCA 59.620 50.000 0.00 0.00 38.68 3.41
2618 2986 4.003788 CGGGACTGGCACCTTCGT 62.004 66.667 0.00 0.00 0.00 3.85
2724 3092 0.606401 AACTTCATCAGGTGGCACCG 60.606 55.000 29.76 23.45 44.90 4.94
2759 3127 1.016130 CCTGCACGCCTACACTTCTG 61.016 60.000 0.00 0.00 0.00 3.02
2760 3128 1.293498 CCTGCACGCCTACACTTCT 59.707 57.895 0.00 0.00 0.00 2.85
2765 3133 0.970640 TTTAGACCTGCACGCCTACA 59.029 50.000 0.00 0.00 0.00 2.74
2800 3168 6.754702 AAGAACAGACATCTTCATTCCATG 57.245 37.500 0.00 0.00 31.61 3.66
2840 3208 1.802839 GCGAAAACAGCATCTTAGCG 58.197 50.000 0.00 0.00 40.15 4.26
2857 3225 1.531149 AGTTCTGAAATCACCAACGCG 59.469 47.619 3.53 3.53 0.00 6.01
2977 3359 3.483808 TCAAGAACTGCACACCACATA 57.516 42.857 0.00 0.00 0.00 2.29
3081 3463 9.394767 TCAAATTAAGTTTCTCAGCTGCATATA 57.605 29.630 9.47 0.00 0.00 0.86
3116 3498 3.517100 AGAGCCTGAAGTAAGCATCAAGA 59.483 43.478 0.00 0.00 0.00 3.02
3118 3500 3.369892 GGAGAGCCTGAAGTAAGCATCAA 60.370 47.826 0.00 0.00 0.00 2.57
3182 3564 0.896940 AGGCACCCAGTTGCATTCAG 60.897 55.000 0.00 0.00 44.94 3.02
3365 3832 6.367983 TCTGGAGCTTTTAATATGGCTTCAT 58.632 36.000 0.00 0.00 39.25 2.57
3366 3833 5.754782 TCTGGAGCTTTTAATATGGCTTCA 58.245 37.500 0.00 0.00 37.89 3.02
3368 3835 6.006275 TCTCTGGAGCTTTTAATATGGCTT 57.994 37.500 0.00 0.00 35.01 4.35
3369 3836 5.636903 TCTCTGGAGCTTTTAATATGGCT 57.363 39.130 0.00 0.00 37.77 4.75
3370 3837 6.000219 TCATCTCTGGAGCTTTTAATATGGC 59.000 40.000 0.00 0.00 0.00 4.40
3371 3838 7.881751 TCATCATCTCTGGAGCTTTTAATATGG 59.118 37.037 0.00 0.00 0.00 2.74
3372 3839 8.843885 TCATCATCTCTGGAGCTTTTAATATG 57.156 34.615 0.00 0.00 0.00 1.78
3373 3840 9.504708 CTTCATCATCTCTGGAGCTTTTAATAT 57.495 33.333 0.00 0.00 0.00 1.28
3374 3841 8.708378 TCTTCATCATCTCTGGAGCTTTTAATA 58.292 33.333 0.00 0.00 0.00 0.98
3375 3842 7.571919 TCTTCATCATCTCTGGAGCTTTTAAT 58.428 34.615 0.00 0.00 0.00 1.40
3425 4732 4.785346 AGATCTTGCAATGGTACCTGAT 57.215 40.909 14.36 0.00 0.00 2.90
3508 4815 8.579850 AAACTGCCAGTTCTGATTTAATATGA 57.420 30.769 11.11 0.00 37.47 2.15
3575 4882 2.987149 GCGTTCGATGAAGAACTCTCAA 59.013 45.455 8.02 0.00 46.00 3.02
3576 4883 2.030274 TGCGTTCGATGAAGAACTCTCA 60.030 45.455 8.02 1.77 46.00 3.27
3577 4884 2.596452 TGCGTTCGATGAAGAACTCTC 58.404 47.619 8.02 0.00 46.00 3.20
3578 4885 2.724977 TGCGTTCGATGAAGAACTCT 57.275 45.000 8.02 0.00 46.00 3.24
3579 4886 2.668457 ACATGCGTTCGATGAAGAACTC 59.332 45.455 8.02 1.35 46.00 3.01
3580 4887 2.688507 ACATGCGTTCGATGAAGAACT 58.311 42.857 8.02 0.00 46.00 3.01
3581 4888 3.612860 ACTACATGCGTTCGATGAAGAAC 59.387 43.478 0.00 0.21 45.05 3.01
3582 4889 3.845178 ACTACATGCGTTCGATGAAGAA 58.155 40.909 0.00 0.00 0.00 2.52
3583 4890 3.503827 ACTACATGCGTTCGATGAAGA 57.496 42.857 0.00 0.00 0.00 2.87
3584 4891 4.584029 AAACTACATGCGTTCGATGAAG 57.416 40.909 0.00 0.00 0.00 3.02
3591 4898 4.600012 ATGCACTAAACTACATGCGTTC 57.400 40.909 0.00 0.00 41.07 3.95
3594 4901 5.657470 ATGTATGCACTAAACTACATGCG 57.343 39.130 7.43 0.00 41.07 4.73
3614 4921 9.640974 CACATGCTAACTTTTTGAAGAAAAATG 57.359 29.630 0.00 0.00 39.70 2.32
3631 4938 0.833949 TGGATACCGCCACATGCTAA 59.166 50.000 0.00 0.00 38.05 3.09
3705 5012 6.603940 TTCAATTACAAAGATTTCTGGGGG 57.396 37.500 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.