Multiple sequence alignment - TraesCS2A01G502500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G502500 chr2A 100.000 2618 0 0 1 2618 731204930 731207547 0.000000e+00 4835.0
1 TraesCS2A01G502500 chr2A 90.698 559 23 14 1 549 731254030 731254569 0.000000e+00 717.0
2 TraesCS2A01G502500 chr2A 87.097 248 17 6 306 542 731256709 731256952 1.540000e-67 267.0
3 TraesCS2A01G502500 chr2A 83.273 275 26 9 290 549 731259574 731259843 4.360000e-58 235.0
4 TraesCS2A01G502500 chr2A 84.874 119 11 5 614 731 731259861 731259973 2.130000e-21 113.0
5 TraesCS2A01G502500 chr1A 96.045 986 36 2 801 1783 361956704 361955719 0.000000e+00 1602.0
6 TraesCS2A01G502500 chr1A 98.922 835 8 1 1784 2618 540224414 540223581 0.000000e+00 1491.0
7 TraesCS2A01G502500 chr1A 93.617 47 2 1 443 489 252102604 252102649 4.680000e-08 69.4
8 TraesCS2A01G502500 chr5B 98.925 837 6 3 1784 2618 557080633 557081468 0.000000e+00 1493.0
9 TraesCS2A01G502500 chr2B 98.922 835 8 1 1784 2618 549698550 549697717 0.000000e+00 1491.0
10 TraesCS2A01G502500 chr2B 98.690 840 10 1 1779 2618 395645834 395644996 0.000000e+00 1489.0
11 TraesCS2A01G502500 chr2B 98.571 840 11 1 1779 2618 723865670 723864832 0.000000e+00 1483.0
12 TraesCS2A01G502500 chr2B 98.343 845 12 2 1774 2618 12044925 12044083 0.000000e+00 1482.0
13 TraesCS2A01G502500 chr2B 80.762 499 48 22 1 488 726115232 726115693 1.930000e-91 346.0
14 TraesCS2A01G502500 chr2B 87.451 255 14 7 306 549 726118957 726119204 7.140000e-71 278.0
15 TraesCS2A01G502500 chr2B 84.982 273 29 6 286 548 726081129 726081399 1.540000e-67 267.0
16 TraesCS2A01G502500 chr2B 88.272 162 16 3 614 773 726081413 726081573 9.560000e-45 191.0
17 TraesCS2A01G502500 chr2B 90.385 104 10 0 1 104 726057753 726057856 1.260000e-28 137.0
18 TraesCS2A01G502500 chr6A 98.463 846 12 1 1773 2618 400503587 400502743 0.000000e+00 1489.0
19 TraesCS2A01G502500 chr7A 98.804 836 9 1 1783 2618 694738093 694738927 0.000000e+00 1487.0
20 TraesCS2A01G502500 chr7A 89.839 994 95 4 794 1783 126553966 126554957 0.000000e+00 1271.0
21 TraesCS2A01G502500 chr3A 98.575 842 9 3 1779 2618 739360230 739361070 0.000000e+00 1485.0
22 TraesCS2A01G502500 chr1B 91.759 995 78 3 791 1783 590988872 590989864 0.000000e+00 1380.0
23 TraesCS2A01G502500 chr1B 89.257 996 100 5 793 1783 141767597 141766604 0.000000e+00 1240.0
24 TraesCS2A01G502500 chr1B 83.988 993 145 9 796 1783 216514364 216515347 0.000000e+00 941.0
25 TraesCS2A01G502500 chr6B 89.468 997 99 4 793 1783 42853748 42852752 0.000000e+00 1254.0
26 TraesCS2A01G502500 chr4A 90.031 963 92 3 823 1783 631910461 631909501 0.000000e+00 1243.0
27 TraesCS2A01G502500 chr6D 86.273 998 125 10 793 1783 472212783 472211791 0.000000e+00 1074.0
28 TraesCS2A01G502500 chr5A 86.125 973 131 4 813 1783 673630754 673629784 0.000000e+00 1046.0
29 TraesCS2A01G502500 chr2D 93.333 240 13 1 1 237 596992032 596992271 4.150000e-93 351.0
30 TraesCS2A01G502500 chr2D 78.004 491 59 25 1 459 596994135 596994608 2.000000e-66 263.0
31 TraesCS2A01G502500 chr2D 89.437 142 10 4 411 548 593524905 593524765 9.630000e-40 174.0
32 TraesCS2A01G502500 chr2D 91.071 56 5 0 632 687 596994672 596994727 2.790000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G502500 chr2A 731204930 731207547 2617 False 4835.000000 4835 100.000000 1 2618 1 chr2A.!!$F1 2617
1 TraesCS2A01G502500 chr2A 731254030 731259973 5943 False 333.000000 717 86.485500 1 731 4 chr2A.!!$F2 730
2 TraesCS2A01G502500 chr1A 361955719 361956704 985 True 1602.000000 1602 96.045000 801 1783 1 chr1A.!!$R1 982
3 TraesCS2A01G502500 chr1A 540223581 540224414 833 True 1491.000000 1491 98.922000 1784 2618 1 chr1A.!!$R2 834
4 TraesCS2A01G502500 chr5B 557080633 557081468 835 False 1493.000000 1493 98.925000 1784 2618 1 chr5B.!!$F1 834
5 TraesCS2A01G502500 chr2B 549697717 549698550 833 True 1491.000000 1491 98.922000 1784 2618 1 chr2B.!!$R3 834
6 TraesCS2A01G502500 chr2B 395644996 395645834 838 True 1489.000000 1489 98.690000 1779 2618 1 chr2B.!!$R2 839
7 TraesCS2A01G502500 chr2B 723864832 723865670 838 True 1483.000000 1483 98.571000 1779 2618 1 chr2B.!!$R4 839
8 TraesCS2A01G502500 chr2B 12044083 12044925 842 True 1482.000000 1482 98.343000 1774 2618 1 chr2B.!!$R1 844
9 TraesCS2A01G502500 chr2B 726115232 726119204 3972 False 312.000000 346 84.106500 1 549 2 chr2B.!!$F3 548
10 TraesCS2A01G502500 chr6A 400502743 400503587 844 True 1489.000000 1489 98.463000 1773 2618 1 chr6A.!!$R1 845
11 TraesCS2A01G502500 chr7A 694738093 694738927 834 False 1487.000000 1487 98.804000 1783 2618 1 chr7A.!!$F2 835
12 TraesCS2A01G502500 chr7A 126553966 126554957 991 False 1271.000000 1271 89.839000 794 1783 1 chr7A.!!$F1 989
13 TraesCS2A01G502500 chr3A 739360230 739361070 840 False 1485.000000 1485 98.575000 1779 2618 1 chr3A.!!$F1 839
14 TraesCS2A01G502500 chr1B 590988872 590989864 992 False 1380.000000 1380 91.759000 791 1783 1 chr1B.!!$F2 992
15 TraesCS2A01G502500 chr1B 141766604 141767597 993 True 1240.000000 1240 89.257000 793 1783 1 chr1B.!!$R1 990
16 TraesCS2A01G502500 chr1B 216514364 216515347 983 False 941.000000 941 83.988000 796 1783 1 chr1B.!!$F1 987
17 TraesCS2A01G502500 chr6B 42852752 42853748 996 True 1254.000000 1254 89.468000 793 1783 1 chr6B.!!$R1 990
18 TraesCS2A01G502500 chr4A 631909501 631910461 960 True 1243.000000 1243 90.031000 823 1783 1 chr4A.!!$R1 960
19 TraesCS2A01G502500 chr6D 472211791 472212783 992 True 1074.000000 1074 86.273000 793 1783 1 chr6D.!!$R1 990
20 TraesCS2A01G502500 chr5A 673629784 673630754 970 True 1046.000000 1046 86.125000 813 1783 1 chr5A.!!$R1 970
21 TraesCS2A01G502500 chr2D 596992032 596994727 2695 False 230.266667 351 87.469333 1 687 3 chr2D.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 701 0.036952 CGGTCCACAGAGCAGTTCAT 60.037 55.0 0.0 0.0 40.69 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 5229 1.338655 ACCGCGGTTAAAGCAAAACAT 59.661 42.857 28.7 0.0 34.19 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.357075 GGAACGAAATTCAGAGGGACC 58.643 52.381 0.00 0.00 39.30 4.46
90 91 4.473520 AGGGACCGCGAATGCCTG 62.474 66.667 19.83 0.00 36.38 4.85
182 190 5.346011 GCCTTTCTGTAAGTTAAATGCTTGC 59.654 40.000 0.00 0.00 33.76 4.01
197 205 1.468054 GCTTGCATAAACAGAAGGCCG 60.468 52.381 0.00 0.00 0.00 6.13
203 211 3.378427 GCATAAACAGAAGGCCGAAATCT 59.622 43.478 0.00 0.00 0.00 2.40
211 219 3.691609 AGAAGGCCGAAATCTTGATTGTC 59.308 43.478 0.00 0.00 0.00 3.18
214 222 2.030946 GGCCGAAATCTTGATTGTCTCG 59.969 50.000 8.22 8.22 0.00 4.04
235 243 1.198178 GTCCTGGAGATACGCTCGATC 59.802 57.143 0.00 0.00 44.91 3.69
236 244 1.202770 TCCTGGAGATACGCTCGATCA 60.203 52.381 0.00 0.00 44.91 2.92
237 245 1.068885 CCTGGAGATACGCTCGATCAC 60.069 57.143 0.00 0.00 44.91 3.06
240 248 0.726452 GAGATACGCTCGATCACGCC 60.726 60.000 0.00 0.00 39.58 5.68
241 249 1.729838 GATACGCTCGATCACGCCC 60.730 63.158 0.00 0.00 39.58 6.13
242 250 2.131294 GATACGCTCGATCACGCCCT 62.131 60.000 0.00 0.00 39.58 5.19
243 251 2.131294 ATACGCTCGATCACGCCCTC 62.131 60.000 0.00 0.00 39.58 4.30
247 264 2.833582 TCGATCACGCCCTCCCTC 60.834 66.667 0.00 0.00 39.58 4.30
249 266 2.764128 GATCACGCCCTCCCTCCA 60.764 66.667 0.00 0.00 0.00 3.86
262 279 0.392336 CCCTCCAGCAGAGAGCATAC 59.608 60.000 5.40 0.00 46.50 2.39
276 293 2.325509 GCATACCGCGTTGAGTTTTT 57.674 45.000 4.92 0.00 0.00 1.94
303 323 2.496070 GCTACTGTATGGGCCGATGATA 59.504 50.000 11.03 0.00 0.00 2.15
490 512 0.616891 AACCCCAGCTAAACCTACCG 59.383 55.000 0.00 0.00 0.00 4.02
509 531 2.917227 GGGGGCAACAGTTGGTGG 60.917 66.667 15.28 0.00 39.74 4.61
542 564 0.661483 GCAGCGGCTCAACTGTTTTC 60.661 55.000 0.00 0.00 36.26 2.29
549 571 4.441087 GCGGCTCAACTGTTTTCTTTTTAG 59.559 41.667 0.00 0.00 0.00 1.85
550 572 4.441087 CGGCTCAACTGTTTTCTTTTTAGC 59.559 41.667 0.00 0.00 0.00 3.09
551 573 5.348164 GGCTCAACTGTTTTCTTTTTAGCA 58.652 37.500 0.00 0.00 0.00 3.49
554 576 7.011389 GGCTCAACTGTTTTCTTTTTAGCATTT 59.989 33.333 0.00 0.00 0.00 2.32
572 594 7.558161 AGCATTTTTCTTTTCTTTTTGAGGG 57.442 32.000 0.00 0.00 0.00 4.30
573 595 6.543465 AGCATTTTTCTTTTCTTTTTGAGGGG 59.457 34.615 0.00 0.00 0.00 4.79
574 596 6.318648 GCATTTTTCTTTTCTTTTTGAGGGGT 59.681 34.615 0.00 0.00 0.00 4.95
575 597 7.679400 GCATTTTTCTTTTCTTTTTGAGGGGTG 60.679 37.037 0.00 0.00 0.00 4.61
576 598 5.351948 TTTCTTTTCTTTTTGAGGGGTGG 57.648 39.130 0.00 0.00 0.00 4.61
577 599 2.698274 TCTTTTCTTTTTGAGGGGTGGC 59.302 45.455 0.00 0.00 0.00 5.01
578 600 2.470057 TTTCTTTTTGAGGGGTGGCT 57.530 45.000 0.00 0.00 0.00 4.75
579 601 1.995376 TTCTTTTTGAGGGGTGGCTC 58.005 50.000 0.00 0.00 0.00 4.70
580 602 0.850100 TCTTTTTGAGGGGTGGCTCA 59.150 50.000 0.00 0.00 0.00 4.26
581 603 1.216678 TCTTTTTGAGGGGTGGCTCAA 59.783 47.619 0.00 0.00 37.75 3.02
582 604 1.341209 CTTTTTGAGGGGTGGCTCAAC 59.659 52.381 0.00 0.00 39.03 3.18
583 605 0.555769 TTTTGAGGGGTGGCTCAACT 59.444 50.000 0.00 0.00 39.03 3.16
584 606 0.178992 TTTGAGGGGTGGCTCAACTG 60.179 55.000 0.00 0.00 39.03 3.16
585 607 1.352622 TTGAGGGGTGGCTCAACTGT 61.353 55.000 0.00 0.00 35.02 3.55
586 608 1.352622 TGAGGGGTGGCTCAACTGTT 61.353 55.000 0.00 0.00 0.00 3.16
587 609 0.178990 GAGGGGTGGCTCAACTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
588 610 0.261696 AGGGGTGGCTCAACTGTTTT 59.738 50.000 0.00 0.00 0.00 2.43
589 611 1.119684 GGGGTGGCTCAACTGTTTTT 58.880 50.000 0.00 0.00 0.00 1.94
678 700 1.367471 CGGTCCACAGAGCAGTTCA 59.633 57.895 0.00 0.00 40.69 3.18
679 701 0.036952 CGGTCCACAGAGCAGTTCAT 60.037 55.000 0.00 0.00 40.69 2.57
700 722 1.409427 GGCGTCTGGTCTACAAGCTAT 59.591 52.381 0.00 0.00 0.00 2.97
726 750 0.321653 CTGGGCTGACCGTTTTAGCT 60.322 55.000 0.00 0.00 44.64 3.32
730 754 0.605589 GCTGACCGTTTTAGCTGGGT 60.606 55.000 0.00 0.00 34.70 4.51
768 793 8.235226 CCTTAATTTCTAAAAAGGTTCCGACTC 58.765 37.037 0.00 0.00 34.92 3.36
774 799 6.226052 TCTAAAAAGGTTCCGACTCTAAACC 58.774 40.000 0.00 0.00 42.27 3.27
775 800 3.413846 AAAGGTTCCGACTCTAAACCC 57.586 47.619 0.00 0.00 42.82 4.11
776 801 2.019807 AGGTTCCGACTCTAAACCCA 57.980 50.000 0.00 0.00 42.82 4.51
777 802 2.332117 AGGTTCCGACTCTAAACCCAA 58.668 47.619 0.00 0.00 42.82 4.12
778 803 2.707257 AGGTTCCGACTCTAAACCCAAA 59.293 45.455 0.00 0.00 42.82 3.28
779 804 3.072211 GGTTCCGACTCTAAACCCAAAG 58.928 50.000 0.00 0.00 37.13 2.77
780 805 2.467566 TCCGACTCTAAACCCAAAGC 57.532 50.000 0.00 0.00 0.00 3.51
782 807 1.804748 CCGACTCTAAACCCAAAGCAC 59.195 52.381 0.00 0.00 0.00 4.40
783 808 1.459592 CGACTCTAAACCCAAAGCACG 59.540 52.381 0.00 0.00 0.00 5.34
784 809 1.804748 GACTCTAAACCCAAAGCACGG 59.195 52.381 0.00 0.00 0.00 4.94
948 979 2.344500 CCTTGGTCCGCGTGGTTA 59.656 61.111 16.01 0.00 36.30 2.85
981 1014 2.094390 CGATCTAGGGTTTGACGGTGAA 60.094 50.000 0.00 0.00 0.00 3.18
1008 1041 2.546494 CGATTTCCTCATGGCGGCC 61.546 63.158 13.32 13.32 0.00 6.13
1451 3552 4.191544 CCTGACAATTTCCTAATCGAGCA 58.808 43.478 0.00 0.00 0.00 4.26
1613 5089 6.126449 GGTAAGAAGGGAGATGAAAGGGTTAT 60.126 42.308 0.00 0.00 0.00 1.89
1657 5244 6.918892 AACTTCCAATGTTTTGCTTTAACC 57.081 33.333 0.00 0.00 0.00 2.85
1799 5445 4.019771 TGGTTTTTGAAGGAAATATGCCCC 60.020 41.667 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.948678 CGTCATCCAAACAAACGGGT 59.051 50.000 0.00 0.00 0.00 5.28
79 80 0.179215 GTTCAGAACAGGCATTCGCG 60.179 55.000 8.54 0.00 39.92 5.87
90 91 4.439289 GGATTGCCATAAGCTGTTCAGAAC 60.439 45.833 6.32 6.32 44.23 3.01
182 190 5.123820 TCAAGATTTCGGCCTTCTGTTTATG 59.876 40.000 0.00 0.00 0.00 1.90
197 205 4.331168 CAGGACCGAGACAATCAAGATTTC 59.669 45.833 0.00 0.00 0.00 2.17
203 211 1.550524 CTCCAGGACCGAGACAATCAA 59.449 52.381 0.00 0.00 0.00 2.57
211 219 0.820074 AGCGTATCTCCAGGACCGAG 60.820 60.000 0.00 0.00 0.00 4.63
214 222 0.818445 TCGAGCGTATCTCCAGGACC 60.818 60.000 0.00 0.00 38.62 4.46
240 248 3.953300 CTCTCTGCTGGAGGGAGG 58.047 66.667 17.47 0.11 44.82 4.30
242 250 0.262876 TATGCTCTCTGCTGGAGGGA 59.737 55.000 10.54 0.00 45.12 4.20
243 251 0.392336 GTATGCTCTCTGCTGGAGGG 59.608 60.000 0.00 0.00 45.09 4.30
247 264 1.593750 GCGGTATGCTCTCTGCTGG 60.594 63.158 0.00 0.00 43.37 4.85
249 266 1.949847 AACGCGGTATGCTCTCTGCT 61.950 55.000 12.47 0.00 43.27 4.24
276 293 2.158871 CGGCCCATACAGTAGCCTAAAA 60.159 50.000 0.00 0.00 43.48 1.52
280 297 0.471971 ATCGGCCCATACAGTAGCCT 60.472 55.000 0.00 0.00 43.48 4.58
322 342 0.853530 ATCCAGGAAGTATTGGCCCC 59.146 55.000 0.00 0.00 34.38 5.80
418 440 2.494059 TCTCAAACGGAGCCTTCTTTG 58.506 47.619 0.00 0.00 43.70 2.77
549 571 6.318648 ACCCCTCAAAAAGAAAAGAAAAATGC 59.681 34.615 0.00 0.00 0.00 3.56
550 572 7.201723 CCACCCCTCAAAAAGAAAAGAAAAATG 60.202 37.037 0.00 0.00 0.00 2.32
551 573 6.828273 CCACCCCTCAAAAAGAAAAGAAAAAT 59.172 34.615 0.00 0.00 0.00 1.82
554 576 4.383661 GCCACCCCTCAAAAAGAAAAGAAA 60.384 41.667 0.00 0.00 0.00 2.52
557 579 2.700371 AGCCACCCCTCAAAAAGAAAAG 59.300 45.455 0.00 0.00 0.00 2.27
559 581 2.316108 GAGCCACCCCTCAAAAAGAAA 58.684 47.619 0.00 0.00 0.00 2.52
561 583 0.850100 TGAGCCACCCCTCAAAAAGA 59.150 50.000 0.00 0.00 38.81 2.52
562 584 1.703411 TTGAGCCACCCCTCAAAAAG 58.297 50.000 2.39 0.00 45.88 2.27
563 585 3.935371 TTGAGCCACCCCTCAAAAA 57.065 47.368 2.39 0.00 45.88 1.94
568 590 0.178990 AAACAGTTGAGCCACCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
569 591 0.261696 AAAACAGTTGAGCCACCCCT 59.738 50.000 0.00 0.00 0.00 4.79
570 592 1.119684 AAAAACAGTTGAGCCACCCC 58.880 50.000 0.00 0.00 0.00 4.95
620 642 1.001268 TGCGCGATTGGCTGTTAAAAA 60.001 42.857 12.10 0.00 40.44 1.94
621 643 0.593618 TGCGCGATTGGCTGTTAAAA 59.406 45.000 12.10 0.00 40.44 1.52
623 645 1.499949 GTGCGCGATTGGCTGTTAA 59.500 52.632 12.10 0.00 40.44 2.01
669 691 1.364626 CCAGACGCCATGAACTGCTC 61.365 60.000 0.00 0.00 0.00 4.26
678 700 0.108138 GCTTGTAGACCAGACGCCAT 60.108 55.000 0.00 0.00 0.00 4.40
679 701 1.185618 AGCTTGTAGACCAGACGCCA 61.186 55.000 0.00 0.00 0.00 5.69
700 722 4.746309 GGTCAGCCCAGCATGCCA 62.746 66.667 15.66 0.00 31.97 4.92
744 768 8.913487 AGAGTCGGAACCTTTTTAGAAATTAA 57.087 30.769 0.00 0.00 0.00 1.40
774 799 0.804989 GAGATTGTCCCGTGCTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
775 800 1.813513 AGAGATTGTCCCGTGCTTTG 58.186 50.000 0.00 0.00 0.00 2.77
776 801 2.568623 AAGAGATTGTCCCGTGCTTT 57.431 45.000 0.00 0.00 0.00 3.51
777 802 2.427506 GAAAGAGATTGTCCCGTGCTT 58.572 47.619 0.00 0.00 0.00 3.91
778 803 1.339151 GGAAAGAGATTGTCCCGTGCT 60.339 52.381 0.00 0.00 0.00 4.40
779 804 1.087501 GGAAAGAGATTGTCCCGTGC 58.912 55.000 0.00 0.00 0.00 5.34
780 805 1.739067 GGGAAAGAGATTGTCCCGTG 58.261 55.000 0.00 0.00 41.70 4.94
784 809 3.180891 CGTAGGGGAAAGAGATTGTCC 57.819 52.381 0.00 0.00 0.00 4.02
948 979 2.830923 CCCTAGATCGATCTGCCAGAAT 59.169 50.000 33.22 11.01 37.76 2.40
981 1014 4.081198 GCCATGAGGAAATCGATCTATCCT 60.081 45.833 21.02 21.02 44.85 3.24
1008 1041 1.726791 CGTCCCTGTGAACTTGATTCG 59.273 52.381 0.00 0.00 40.56 3.34
1188 1726 0.882042 GCATGTCCCCATACAGAGCG 60.882 60.000 0.00 0.00 31.70 5.03
1451 3552 3.065787 GCCATCCCCCTGACTGCAT 62.066 63.158 0.00 0.00 0.00 3.96
1642 5229 1.338655 ACCGCGGTTAAAGCAAAACAT 59.661 42.857 28.70 0.00 34.19 2.71
1657 5244 2.699768 AATGCCCACATTCACCGCG 61.700 57.895 0.00 0.00 43.08 6.46
2487 7989 4.398358 ACGAAGATCTTTATCGGTCAGACA 59.602 41.667 17.21 0.00 40.71 3.41
2569 8071 1.816835 TGTAGACATGACCGAGACACC 59.183 52.381 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.