Multiple sequence alignment - TraesCS2A01G502100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G502100 chr2A 100.000 5182 0 0 1 5182 729978877 729984058 0.000000e+00 9570.0
1 TraesCS2A01G502100 chr2A 93.043 115 6 2 4516 4630 450976711 450976599 3.210000e-37 167.0
2 TraesCS2A01G502100 chr2A 93.694 111 7 0 4517 4627 523072534 523072644 3.210000e-37 167.0
3 TraesCS2A01G502100 chr2D 88.829 1844 110 43 681 2505 596247856 596249622 0.000000e+00 2176.0
4 TraesCS2A01G502100 chr2D 89.068 869 55 19 2800 3646 596250033 596250883 0.000000e+00 1042.0
5 TraesCS2A01G502100 chr2D 90.524 802 34 11 3733 4521 596250978 596251750 0.000000e+00 1022.0
6 TraesCS2A01G502100 chr2D 92.562 484 18 9 40 518 596247383 596247853 0.000000e+00 678.0
7 TraesCS2A01G502100 chr2D 97.087 206 6 0 2597 2802 596249781 596249986 1.070000e-91 348.0
8 TraesCS2A01G502100 chr2D 85.251 339 42 6 4646 4979 596252081 596252416 4.970000e-90 342.0
9 TraesCS2A01G502100 chr2B 93.075 1473 62 19 685 2152 725107077 725108514 0.000000e+00 2119.0
10 TraesCS2A01G502100 chr2B 91.806 1135 60 8 2596 3708 725109044 725110167 0.000000e+00 1550.0
11 TraesCS2A01G502100 chr2B 86.597 761 41 28 3733 4451 725110776 725111517 0.000000e+00 784.0
12 TraesCS2A01G502100 chr2B 89.358 545 26 12 4643 5182 725111679 725112196 0.000000e+00 656.0
13 TraesCS2A01G502100 chr2B 84.479 509 30 18 40 518 725106582 725107071 1.700000e-124 457.0
14 TraesCS2A01G502100 chr2B 85.304 313 18 12 2204 2494 725108605 725108911 1.090000e-76 298.0
15 TraesCS2A01G502100 chr2B 100.000 129 0 0 532 660 690892782 690892654 6.710000e-59 239.0
16 TraesCS2A01G502100 chr2B 100.000 129 0 0 532 660 769901423 769901295 6.710000e-59 239.0
17 TraesCS2A01G502100 chr7D 82.734 417 62 6 3773 4181 540367218 540366804 3.810000e-96 363.0
18 TraesCS2A01G502100 chr7B 82.254 417 64 6 3773 4181 583384575 583384989 8.260000e-93 351.0
19 TraesCS2A01G502100 chr7B 98.131 107 1 1 4520 4626 717984288 717984183 8.860000e-43 185.0
20 TraesCS2A01G502100 chr7B 77.073 205 37 7 1290 1493 583382542 583382737 5.490000e-20 110.0
21 TraesCS2A01G502100 chr7A 81.340 418 66 6 3773 4181 621566750 621567164 3.870000e-86 329.0
22 TraesCS2A01G502100 chr6D 99.225 129 1 0 532 660 463557361 463557489 3.120000e-57 233.0
23 TraesCS2A01G502100 chr1B 98.485 132 2 0 532 663 520363641 520363510 3.120000e-57 233.0
24 TraesCS2A01G502100 chr1B 100.000 28 0 0 953 980 677945174 677945201 9.000000e-03 52.8
25 TraesCS2A01G502100 chr5A 98.450 129 2 0 532 660 582629295 582629167 1.450000e-55 228.0
26 TraesCS2A01G502100 chr5A 95.652 138 6 0 523 660 37840998 37841135 6.750000e-54 222.0
27 TraesCS2A01G502100 chr5A 93.860 114 7 0 4517 4630 411889314 411889201 6.900000e-39 172.0
28 TraesCS2A01G502100 chr5A 91.597 119 8 2 4519 4637 585094187 585094303 4.150000e-36 163.0
29 TraesCS2A01G502100 chr4A 95.327 107 5 0 4520 4626 255332225 255332119 2.480000e-38 171.0
30 TraesCS2A01G502100 chr4A 100.000 30 0 0 954 983 606347652 606347623 7.250000e-04 56.5
31 TraesCS2A01G502100 chr3A 93.162 117 7 1 4520 4636 402126395 402126280 2.480000e-38 171.0
32 TraesCS2A01G502100 chr3A 91.597 119 9 1 4516 4634 469933786 469933669 4.150000e-36 163.0
33 TraesCS2A01G502100 chr3A 87.500 48 4 2 1168 1214 467403846 467403800 3.000000e-03 54.7
34 TraesCS2A01G502100 chr1A 92.437 119 7 2 4517 4634 557114466 557114583 8.920000e-38 169.0
35 TraesCS2A01G502100 chr3D 87.273 55 5 2 1168 1221 348912837 348912784 1.560000e-05 62.1
36 TraesCS2A01G502100 chr3D 97.143 35 1 0 1185 1219 419464196 419464230 5.600000e-05 60.2
37 TraesCS2A01G502100 chr6B 92.308 39 1 2 954 991 22559159 22559196 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G502100 chr2A 729978877 729984058 5181 False 9570.000000 9570 100.0000 1 5182 1 chr2A.!!$F2 5181
1 TraesCS2A01G502100 chr2D 596247383 596252416 5033 False 934.666667 2176 90.5535 40 4979 6 chr2D.!!$F1 4939
2 TraesCS2A01G502100 chr2B 725106582 725112196 5614 False 977.333333 2119 88.4365 40 5182 6 chr2B.!!$F1 5142
3 TraesCS2A01G502100 chr7B 583382542 583384989 2447 False 230.500000 351 79.6635 1290 4181 2 chr7B.!!$F1 2891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 657 0.026803 GCTCGATTTCATGGTCGTGC 59.973 55.0 19.17 19.17 45.70 5.34 F
657 693 0.032130 TGTCGTCTGTGGAGCAGTTC 59.968 55.0 0.00 0.00 45.23 3.01 F
974 1014 0.179121 CTGAGCTGAGCTGAGCAGAG 60.179 60.0 27.28 17.23 39.88 3.35 F
979 1019 0.179121 CTGAGCTGAGCAGAGCAGAG 60.179 60.0 7.39 1.40 41.83 3.35 F
2181 2760 0.321653 AGCCAGCGTACTTCTTTGGG 60.322 55.0 0.00 0.00 0.00 4.12 F
2924 3721 0.235665 CGTGACACAACACATCCTGC 59.764 55.0 6.37 0.00 40.34 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2354 2954 0.108615 CAGACACCTACTCGCCCAAG 60.109 60.0 0.00 0.00 0.00 3.61 R
2516 3119 0.393132 GTTTCAGTAGGGCCCTGCTC 60.393 60.0 37.11 23.06 36.89 4.26 R
2518 3121 0.393132 GAGTTTCAGTAGGGCCCTGC 60.393 60.0 35.81 33.41 0.00 4.85 R
2521 3124 0.984995 ACAGAGTTTCAGTAGGGCCC 59.015 55.0 16.46 16.46 0.00 5.80 R
3359 4283 0.179048 CATCATAGCGTGGGCCTTCA 60.179 55.0 4.53 0.00 41.24 3.02 R
4232 5759 0.323999 TTCACCAGCCTAGCTACGGA 60.324 55.0 11.96 0.00 36.40 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.102553 GCGTCTAGCGGAGGTCAC 59.897 66.667 8.31 0.00 40.68 3.67
20 21 2.403987 CGTCTAGCGGAGGTCACG 59.596 66.667 0.00 0.00 40.68 4.35
27 28 3.062466 CGGAGGTCACGCCAGAGA 61.062 66.667 0.00 0.00 40.61 3.10
28 29 2.418910 CGGAGGTCACGCCAGAGAT 61.419 63.158 0.00 0.00 40.61 2.75
29 30 1.142748 GGAGGTCACGCCAGAGATG 59.857 63.158 0.00 0.00 40.61 2.90
30 31 1.323271 GGAGGTCACGCCAGAGATGA 61.323 60.000 0.00 0.00 40.61 2.92
31 32 0.102120 GAGGTCACGCCAGAGATGAG 59.898 60.000 0.00 0.00 40.61 2.90
32 33 1.520342 GGTCACGCCAGAGATGAGC 60.520 63.158 0.00 0.00 37.17 4.26
33 34 1.515020 GTCACGCCAGAGATGAGCT 59.485 57.895 0.00 0.00 0.00 4.09
34 35 0.805322 GTCACGCCAGAGATGAGCTG 60.805 60.000 0.00 0.00 0.00 4.24
35 36 0.967380 TCACGCCAGAGATGAGCTGA 60.967 55.000 0.00 0.00 35.39 4.26
36 37 0.528033 CACGCCAGAGATGAGCTGAG 60.528 60.000 0.00 0.00 35.39 3.35
37 38 1.592131 CGCCAGAGATGAGCTGAGC 60.592 63.158 0.00 0.00 35.39 4.26
38 39 1.227615 GCCAGAGATGAGCTGAGCC 60.228 63.158 0.00 0.00 35.39 4.70
39 40 1.688269 GCCAGAGATGAGCTGAGCCT 61.688 60.000 0.00 0.00 35.39 4.58
40 41 0.105224 CCAGAGATGAGCTGAGCCTG 59.895 60.000 0.00 0.00 35.39 4.85
41 42 1.112950 CAGAGATGAGCTGAGCCTGA 58.887 55.000 0.00 0.00 35.39 3.86
42 43 1.067974 CAGAGATGAGCTGAGCCTGAG 59.932 57.143 0.00 0.00 35.39 3.35
43 44 0.249573 GAGATGAGCTGAGCCTGAGC 60.250 60.000 0.00 0.00 40.32 4.26
44 45 1.227615 GATGAGCTGAGCCTGAGCC 60.228 63.158 0.00 0.00 41.25 4.70
192 203 0.582005 GGTTCGTGCTCAAGTGTGTC 59.418 55.000 0.00 0.00 0.00 3.67
213 224 3.055819 TCTTGTTGCTCGATAAAGCTCCT 60.056 43.478 0.00 0.00 42.94 3.69
228 239 9.509956 GATAAAGCTCCTCTTACTCTATCACTA 57.490 37.037 0.00 0.00 33.88 2.74
233 244 6.293955 GCTCCTCTTACTCTATCACTAGCAAG 60.294 46.154 0.00 0.00 0.00 4.01
290 324 4.637534 ACTTAGCAAGCAGTGATTATGGTG 59.362 41.667 0.00 0.00 0.00 4.17
304 338 2.949177 ATGGTGGTTTGTGCTCTACA 57.051 45.000 0.00 0.00 37.56 2.74
328 362 5.316167 AGCACTAACAAGTGAAATGGATCA 58.684 37.500 9.63 0.00 42.02 2.92
335 369 1.017387 GTGAAATGGATCACCCGCTC 58.983 55.000 0.00 0.00 43.11 5.03
336 370 0.617935 TGAAATGGATCACCCGCTCA 59.382 50.000 0.00 0.00 37.93 4.26
337 371 1.212688 TGAAATGGATCACCCGCTCAT 59.787 47.619 0.00 0.00 37.93 2.90
338 372 1.876156 GAAATGGATCACCCGCTCATC 59.124 52.381 0.00 0.00 37.93 2.92
339 373 0.250038 AATGGATCACCCGCTCATCG 60.250 55.000 0.00 0.00 37.93 3.84
340 374 1.115326 ATGGATCACCCGCTCATCGA 61.115 55.000 0.00 0.00 41.67 3.59
341 375 1.300233 GGATCACCCGCTCATCGAC 60.300 63.158 0.00 0.00 41.67 4.20
342 376 1.437573 GATCACCCGCTCATCGACA 59.562 57.895 0.00 0.00 41.67 4.35
343 377 0.179111 GATCACCCGCTCATCGACAA 60.179 55.000 0.00 0.00 41.67 3.18
344 378 0.179100 ATCACCCGCTCATCGACAAG 60.179 55.000 0.00 0.00 41.67 3.16
345 379 2.125512 ACCCGCTCATCGACAAGC 60.126 61.111 10.15 10.15 41.67 4.01
346 380 2.125552 CCCGCTCATCGACAAGCA 60.126 61.111 18.01 0.00 41.67 3.91
351 385 1.971962 CGCTCATCGACAAGCAAAAAC 59.028 47.619 18.01 0.00 41.67 2.43
364 398 6.325596 ACAAGCAAAAACTGAAGAGAGAAAC 58.674 36.000 0.00 0.00 0.00 2.78
482 518 5.250982 TCGGAAAAGGAAAAAGATACTCCC 58.749 41.667 0.00 0.00 0.00 4.30
527 563 3.202001 CAAACGGCGCGGATGGAT 61.202 61.111 22.76 0.00 0.00 3.41
528 564 3.202001 AAACGGCGCGGATGGATG 61.202 61.111 22.76 0.00 0.00 3.51
529 565 3.969250 AAACGGCGCGGATGGATGT 62.969 57.895 22.76 0.00 0.00 3.06
530 566 2.581208 AAACGGCGCGGATGGATGTA 62.581 55.000 22.76 0.00 0.00 2.29
531 567 2.279851 CGGCGCGGATGGATGTAA 60.280 61.111 9.72 0.00 0.00 2.41
532 568 1.885388 CGGCGCGGATGGATGTAAA 60.885 57.895 9.72 0.00 0.00 2.01
533 569 1.647084 GGCGCGGATGGATGTAAAC 59.353 57.895 8.83 0.00 0.00 2.01
534 570 1.092921 GGCGCGGATGGATGTAAACA 61.093 55.000 8.83 0.00 0.00 2.83
535 571 0.304705 GCGCGGATGGATGTAAACAG 59.695 55.000 8.83 0.00 0.00 3.16
536 572 1.934589 CGCGGATGGATGTAAACAGA 58.065 50.000 0.00 0.00 0.00 3.41
537 573 1.593006 CGCGGATGGATGTAAACAGAC 59.407 52.381 0.00 0.00 0.00 3.51
538 574 1.593006 GCGGATGGATGTAAACAGACG 59.407 52.381 0.00 0.00 0.00 4.18
539 575 2.201732 CGGATGGATGTAAACAGACGG 58.798 52.381 0.00 0.00 0.00 4.79
540 576 2.159156 CGGATGGATGTAAACAGACGGA 60.159 50.000 0.00 0.00 0.00 4.69
541 577 3.195661 GGATGGATGTAAACAGACGGAC 58.804 50.000 0.00 0.00 0.00 4.79
542 578 2.357327 TGGATGTAAACAGACGGACG 57.643 50.000 0.00 0.00 0.00 4.79
543 579 1.887854 TGGATGTAAACAGACGGACGA 59.112 47.619 0.00 0.00 0.00 4.20
544 580 2.494471 TGGATGTAAACAGACGGACGAT 59.506 45.455 0.00 0.00 0.00 3.73
545 581 3.056393 TGGATGTAAACAGACGGACGATT 60.056 43.478 0.00 0.00 0.00 3.34
546 582 3.550678 GGATGTAAACAGACGGACGATTC 59.449 47.826 0.00 0.00 0.00 2.52
547 583 3.646611 TGTAAACAGACGGACGATTCA 57.353 42.857 0.00 0.00 0.00 2.57
548 584 4.182693 TGTAAACAGACGGACGATTCAT 57.817 40.909 0.00 0.00 0.00 2.57
549 585 3.924073 TGTAAACAGACGGACGATTCATG 59.076 43.478 0.00 0.00 0.00 3.07
550 586 1.359848 AACAGACGGACGATTCATGC 58.640 50.000 0.00 0.00 0.00 4.06
551 587 0.246360 ACAGACGGACGATTCATGCA 59.754 50.000 0.00 0.00 0.00 3.96
552 588 0.647410 CAGACGGACGATTCATGCAC 59.353 55.000 0.00 0.00 0.00 4.57
553 589 0.802222 AGACGGACGATTCATGCACG 60.802 55.000 0.00 0.00 0.00 5.34
554 590 0.800683 GACGGACGATTCATGCACGA 60.801 55.000 11.51 0.00 0.00 4.35
555 591 1.076533 ACGGACGATTCATGCACGAC 61.077 55.000 11.51 6.51 0.00 4.34
556 592 1.631072 GGACGATTCATGCACGACG 59.369 57.895 11.51 0.00 0.00 5.12
557 593 0.800683 GGACGATTCATGCACGACGA 60.801 55.000 0.00 0.00 0.00 4.20
558 594 1.200483 GACGATTCATGCACGACGAT 58.800 50.000 0.00 0.00 0.00 3.73
559 595 0.923403 ACGATTCATGCACGACGATG 59.077 50.000 0.00 0.00 0.00 3.84
560 596 0.923403 CGATTCATGCACGACGATGT 59.077 50.000 0.00 0.00 0.00 3.06
561 597 2.116366 CGATTCATGCACGACGATGTA 58.884 47.619 0.00 0.00 0.00 2.29
562 598 2.533942 CGATTCATGCACGACGATGTAA 59.466 45.455 0.00 0.00 0.00 2.41
563 599 3.000177 CGATTCATGCACGACGATGTAAA 60.000 43.478 0.00 0.00 0.00 2.01
564 600 4.318050 CGATTCATGCACGACGATGTAAAT 60.318 41.667 0.00 0.00 0.00 1.40
565 601 4.514545 TTCATGCACGACGATGTAAATC 57.485 40.909 0.00 0.00 0.00 2.17
566 602 2.863740 TCATGCACGACGATGTAAATCC 59.136 45.455 0.00 0.00 0.00 3.01
567 603 2.371910 TGCACGACGATGTAAATCCA 57.628 45.000 0.00 0.00 0.00 3.41
568 604 2.267426 TGCACGACGATGTAAATCCAG 58.733 47.619 0.00 0.00 0.00 3.86
569 605 1.004927 GCACGACGATGTAAATCCAGC 60.005 52.381 0.00 0.00 0.00 4.85
570 606 1.593006 CACGACGATGTAAATCCAGCC 59.407 52.381 0.00 0.00 0.00 4.85
571 607 0.852777 CGACGATGTAAATCCAGCCG 59.147 55.000 0.00 0.00 0.00 5.52
572 608 0.582005 GACGATGTAAATCCAGCCGC 59.418 55.000 0.00 0.00 0.00 6.53
573 609 0.107897 ACGATGTAAATCCAGCCGCA 60.108 50.000 0.00 0.00 0.00 5.69
574 610 0.304705 CGATGTAAATCCAGCCGCAC 59.695 55.000 0.00 0.00 0.00 5.34
575 611 1.378531 GATGTAAATCCAGCCGCACA 58.621 50.000 0.00 0.00 0.00 4.57
576 612 1.949525 GATGTAAATCCAGCCGCACAT 59.050 47.619 0.00 0.00 0.00 3.21
577 613 1.093972 TGTAAATCCAGCCGCACATG 58.906 50.000 0.00 0.00 0.00 3.21
578 614 1.094785 GTAAATCCAGCCGCACATGT 58.905 50.000 0.00 0.00 0.00 3.21
579 615 2.285083 GTAAATCCAGCCGCACATGTA 58.715 47.619 0.00 0.00 0.00 2.29
580 616 1.382522 AAATCCAGCCGCACATGTAG 58.617 50.000 0.00 0.00 0.00 2.74
581 617 0.253044 AATCCAGCCGCACATGTAGT 59.747 50.000 0.00 0.00 0.00 2.73
582 618 0.179073 ATCCAGCCGCACATGTAGTC 60.179 55.000 0.00 0.00 0.00 2.59
583 619 2.167219 CCAGCCGCACATGTAGTCG 61.167 63.158 0.00 2.57 0.00 4.18
584 620 1.153842 CAGCCGCACATGTAGTCGA 60.154 57.895 13.64 0.00 0.00 4.20
585 621 1.153823 AGCCGCACATGTAGTCGAC 60.154 57.895 7.70 7.70 0.00 4.20
586 622 1.153823 GCCGCACATGTAGTCGACT 60.154 57.895 23.66 23.66 0.00 4.18
587 623 0.736325 GCCGCACATGTAGTCGACTT 60.736 55.000 25.44 2.19 0.00 3.01
588 624 1.468565 GCCGCACATGTAGTCGACTTA 60.469 52.381 25.44 13.92 0.00 2.24
589 625 2.871133 CCGCACATGTAGTCGACTTAA 58.129 47.619 25.44 12.88 0.00 1.85
590 626 3.247442 CCGCACATGTAGTCGACTTAAA 58.753 45.455 25.44 10.17 0.00 1.52
591 627 3.303495 CCGCACATGTAGTCGACTTAAAG 59.697 47.826 25.44 14.04 0.00 1.85
592 628 3.303495 CGCACATGTAGTCGACTTAAAGG 59.697 47.826 25.44 13.49 0.00 3.11
593 629 3.617263 GCACATGTAGTCGACTTAAAGGG 59.383 47.826 25.44 13.87 0.00 3.95
594 630 3.617263 CACATGTAGTCGACTTAAAGGGC 59.383 47.826 25.44 6.32 0.00 5.19
595 631 3.259876 ACATGTAGTCGACTTAAAGGGCA 59.740 43.478 25.44 11.46 0.00 5.36
596 632 4.250464 CATGTAGTCGACTTAAAGGGCAA 58.750 43.478 25.44 0.00 0.00 4.52
597 633 3.656559 TGTAGTCGACTTAAAGGGCAAC 58.343 45.455 25.44 12.67 0.00 4.17
598 634 2.922740 AGTCGACTTAAAGGGCAACA 57.077 45.000 13.58 0.00 39.74 3.33
599 635 2.767505 AGTCGACTTAAAGGGCAACAG 58.232 47.619 13.58 0.00 39.74 3.16
600 636 1.197036 GTCGACTTAAAGGGCAACAGC 59.803 52.381 8.70 0.00 39.74 4.40
609 645 3.127533 GGCAACAGCCGCTCGATT 61.128 61.111 0.00 0.00 38.93 3.34
610 646 2.690778 GGCAACAGCCGCTCGATTT 61.691 57.895 0.00 0.00 38.93 2.17
611 647 1.226128 GCAACAGCCGCTCGATTTC 60.226 57.895 0.00 0.00 0.00 2.17
612 648 1.911293 GCAACAGCCGCTCGATTTCA 61.911 55.000 0.00 0.00 0.00 2.69
613 649 0.729116 CAACAGCCGCTCGATTTCAT 59.271 50.000 0.00 0.00 0.00 2.57
614 650 0.729116 AACAGCCGCTCGATTTCATG 59.271 50.000 0.00 0.00 0.00 3.07
615 651 1.091771 ACAGCCGCTCGATTTCATGG 61.092 55.000 0.00 0.00 0.00 3.66
616 652 1.091771 CAGCCGCTCGATTTCATGGT 61.092 55.000 0.00 0.00 0.00 3.55
617 653 0.811616 AGCCGCTCGATTTCATGGTC 60.812 55.000 0.00 0.00 0.00 4.02
618 654 1.927210 CCGCTCGATTTCATGGTCG 59.073 57.895 8.97 8.97 39.11 4.79
619 655 0.806102 CCGCTCGATTTCATGGTCGT 60.806 55.000 13.14 0.00 38.85 4.34
620 656 0.298707 CGCTCGATTTCATGGTCGTG 59.701 55.000 13.14 12.13 38.85 4.35
621 657 0.026803 GCTCGATTTCATGGTCGTGC 59.973 55.000 19.17 19.17 45.70 5.34
622 658 0.298707 CTCGATTTCATGGTCGTGCG 59.701 55.000 13.14 0.00 38.85 5.34
623 659 0.109039 TCGATTTCATGGTCGTGCGA 60.109 50.000 13.14 0.00 38.85 5.10
624 660 0.718904 CGATTTCATGGTCGTGCGAA 59.281 50.000 0.00 0.00 33.42 4.70
625 661 1.127766 CGATTTCATGGTCGTGCGAAA 59.872 47.619 0.00 0.00 33.42 3.46
626 662 2.412195 CGATTTCATGGTCGTGCGAAAA 60.412 45.455 0.00 0.00 31.64 2.29
627 663 3.727673 CGATTTCATGGTCGTGCGAAAAT 60.728 43.478 0.00 0.00 31.64 1.82
628 664 2.892373 TTCATGGTCGTGCGAAAATC 57.108 45.000 0.00 0.00 0.00 2.17
629 665 0.718904 TCATGGTCGTGCGAAAATCG 59.281 50.000 0.00 0.00 43.89 3.34
630 666 0.247655 CATGGTCGTGCGAAAATCGG 60.248 55.000 1.64 0.00 40.84 4.18
631 667 0.672401 ATGGTCGTGCGAAAATCGGT 60.672 50.000 1.64 0.00 40.84 4.69
632 668 0.881159 TGGTCGTGCGAAAATCGGTT 60.881 50.000 1.64 0.00 40.84 4.44
633 669 0.452122 GGTCGTGCGAAAATCGGTTG 60.452 55.000 1.64 0.00 40.84 3.77
634 670 1.058057 GTCGTGCGAAAATCGGTTGC 61.058 55.000 1.64 0.00 40.84 4.17
635 671 1.082431 CGTGCGAAAATCGGTTGCA 60.082 52.632 1.64 0.00 40.84 4.08
636 672 4.933483 TGCGAAAATCGGTTGCAC 57.067 50.000 1.64 0.00 40.84 4.57
637 673 2.025719 TGCGAAAATCGGTTGCACA 58.974 47.368 1.64 0.00 40.84 4.57
638 674 0.595588 TGCGAAAATCGGTTGCACAT 59.404 45.000 1.64 0.00 40.84 3.21
639 675 0.984109 GCGAAAATCGGTTGCACATG 59.016 50.000 1.64 0.00 40.84 3.21
640 676 1.665735 GCGAAAATCGGTTGCACATGT 60.666 47.619 0.00 0.00 40.84 3.21
641 677 2.241722 CGAAAATCGGTTGCACATGTC 58.758 47.619 0.00 0.00 36.00 3.06
642 678 2.241722 GAAAATCGGTTGCACATGTCG 58.758 47.619 0.00 0.00 0.00 4.35
643 679 1.234821 AAATCGGTTGCACATGTCGT 58.765 45.000 0.00 0.00 0.00 4.34
644 680 0.796312 AATCGGTTGCACATGTCGTC 59.204 50.000 0.00 0.00 0.00 4.20
645 681 0.037326 ATCGGTTGCACATGTCGTCT 60.037 50.000 0.00 0.00 0.00 4.18
646 682 0.943835 TCGGTTGCACATGTCGTCTG 60.944 55.000 0.00 0.00 0.00 3.51
647 683 1.221466 CGGTTGCACATGTCGTCTGT 61.221 55.000 0.00 0.00 0.00 3.41
648 684 0.235665 GGTTGCACATGTCGTCTGTG 59.764 55.000 0.00 9.39 45.39 3.66
649 685 0.235665 GTTGCACATGTCGTCTGTGG 59.764 55.000 0.00 0.00 43.34 4.17
650 686 0.105778 TTGCACATGTCGTCTGTGGA 59.894 50.000 0.00 9.72 43.34 4.02
651 687 0.319813 TGCACATGTCGTCTGTGGAG 60.320 55.000 0.00 0.00 43.34 3.86
652 688 1.630244 GCACATGTCGTCTGTGGAGC 61.630 60.000 0.00 0.00 43.34 4.70
653 689 0.319813 CACATGTCGTCTGTGGAGCA 60.320 55.000 0.00 0.00 40.23 4.26
654 690 0.037882 ACATGTCGTCTGTGGAGCAG 60.038 55.000 0.00 0.00 46.34 4.24
655 691 0.037882 CATGTCGTCTGTGGAGCAGT 60.038 55.000 0.00 0.00 45.23 4.40
656 692 0.681733 ATGTCGTCTGTGGAGCAGTT 59.318 50.000 0.00 0.00 45.23 3.16
657 693 0.032130 TGTCGTCTGTGGAGCAGTTC 59.968 55.000 0.00 0.00 45.23 3.01
658 694 0.667792 GTCGTCTGTGGAGCAGTTCC 60.668 60.000 0.00 0.00 45.23 3.62
665 701 3.744559 GGAGCAGTTCCGTTGCAA 58.255 55.556 0.00 0.00 43.92 4.08
666 702 2.029743 GGAGCAGTTCCGTTGCAAA 58.970 52.632 0.00 0.00 43.92 3.68
667 703 0.317854 GGAGCAGTTCCGTTGCAAAC 60.318 55.000 0.00 0.00 43.92 2.93
738 774 1.298859 ACATCGCACGGCTCCTTTTC 61.299 55.000 0.00 0.00 0.00 2.29
892 930 1.418367 CCGGTACAAATCGTGCGTG 59.582 57.895 0.00 0.00 0.00 5.34
919 957 4.012895 GTCACGCACGGTGCCTTG 62.013 66.667 26.00 21.90 46.56 3.61
920 958 4.228567 TCACGCACGGTGCCTTGA 62.229 61.111 26.00 23.62 46.56 3.02
922 960 4.235762 ACGCACGGTGCCTTGAGT 62.236 61.111 26.00 15.18 41.12 3.41
923 961 2.972505 CGCACGGTGCCTTGAGTT 60.973 61.111 26.00 0.00 41.12 3.01
924 962 2.946762 GCACGGTGCCTTGAGTTC 59.053 61.111 22.19 0.00 37.42 3.01
925 963 2.954753 GCACGGTGCCTTGAGTTCG 61.955 63.158 22.19 0.00 37.42 3.95
926 964 2.665185 ACGGTGCCTTGAGTTCGC 60.665 61.111 0.00 0.00 0.00 4.70
927 965 3.423154 CGGTGCCTTGAGTTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
928 966 3.056328 GGTGCCTTGAGTTCGCCC 61.056 66.667 0.00 0.00 0.00 6.13
929 967 2.281484 GTGCCTTGAGTTCGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
933 971 2.317609 CCTTGAGTTCGCCCACACG 61.318 63.158 0.00 0.00 0.00 4.49
973 1013 1.891616 CTGAGCTGAGCTGAGCAGA 59.108 57.895 27.28 11.68 39.88 4.26
974 1014 0.179121 CTGAGCTGAGCTGAGCAGAG 60.179 60.000 27.28 17.23 39.88 3.35
975 1015 1.519898 GAGCTGAGCTGAGCAGAGC 60.520 63.158 27.28 17.06 39.88 4.09
976 1016 2.228389 GAGCTGAGCTGAGCAGAGCA 62.228 60.000 27.28 9.17 39.88 4.26
977 1017 1.812093 GCTGAGCTGAGCAGAGCAG 60.812 63.158 21.06 14.81 41.83 4.24
978 1018 1.891616 CTGAGCTGAGCAGAGCAGA 59.108 57.895 7.39 0.00 41.83 4.26
979 1019 0.179121 CTGAGCTGAGCAGAGCAGAG 60.179 60.000 7.39 1.40 41.83 3.35
980 1020 1.519898 GAGCTGAGCAGAGCAGAGC 60.520 63.158 7.39 4.63 41.83 4.09
981 1021 2.228389 GAGCTGAGCAGAGCAGAGCA 62.228 60.000 7.39 0.00 41.83 4.26
984 1024 1.605971 CTGAGCAGAGCAGAGCAGGA 61.606 60.000 0.00 0.00 35.39 3.86
1197 1237 1.374758 CACGCTCCGCCTCTTCTTT 60.375 57.895 0.00 0.00 0.00 2.52
1234 1274 4.338710 TAAGCCGCGCACCCCTTT 62.339 61.111 8.75 0.00 0.00 3.11
1257 1297 2.031012 CTTGCTCCACCGTGCTGA 59.969 61.111 0.00 0.00 0.00 4.26
1262 1302 0.391130 GCTCCACCGTGCTGACATTA 60.391 55.000 0.00 0.00 0.00 1.90
1288 1328 4.293648 CGTGCCCTCACCGTGACA 62.294 66.667 0.00 0.00 40.04 3.58
1293 1333 1.006102 CCCTCACCGTGACAGTGTC 60.006 63.158 16.68 16.68 36.58 3.67
1295 1335 1.359117 CTCACCGTGACAGTGTCGT 59.641 57.895 18.17 7.57 36.58 4.34
1503 1547 1.975363 GACGTCGTCTCCCTGGTACG 61.975 65.000 18.09 7.03 37.96 3.67
1504 1548 2.037136 CGTCGTCTCCCTGGTACGT 61.037 63.158 11.57 0.00 37.83 3.57
1505 1549 1.580845 CGTCGTCTCCCTGGTACGTT 61.581 60.000 0.00 0.00 37.83 3.99
1524 1568 3.666001 GTTGTACAATACCACGATTGCG 58.334 45.455 12.26 0.00 39.94 4.85
1555 1599 2.336088 CCGTCGTACCACCGTGTT 59.664 61.111 0.00 0.00 0.00 3.32
1560 1604 2.053627 GTCGTACCACCGTGTTAACAG 58.946 52.381 8.98 0.45 0.00 3.16
1722 1766 4.467107 AGGCTCGTCTCCTCCCCC 62.467 72.222 0.00 0.00 0.00 5.40
1795 2018 2.417097 GCGCAACCCTTTTGCTGT 59.583 55.556 0.30 0.00 42.87 4.40
1906 2129 0.769247 TCCTGCCATGCTGCATCTAT 59.231 50.000 13.10 0.00 41.16 1.98
1907 2130 1.980036 TCCTGCCATGCTGCATCTATA 59.020 47.619 13.10 0.00 41.16 1.31
1908 2131 2.027469 TCCTGCCATGCTGCATCTATAG 60.027 50.000 13.10 8.65 41.16 1.31
1909 2132 2.357075 CTGCCATGCTGCATCTATAGG 58.643 52.381 13.10 11.65 41.16 2.57
1910 2133 1.093159 GCCATGCTGCATCTATAGGC 58.907 55.000 20.60 20.60 0.00 3.93
2005 2228 0.822811 GTCAGAGAGATGCAGCAGGA 59.177 55.000 4.07 0.00 0.00 3.86
2019 2243 1.162800 GCAGGATGGCTGGATCGTTC 61.163 60.000 0.00 0.00 35.86 3.95
2180 2759 0.798776 CAGCCAGCGTACTTCTTTGG 59.201 55.000 0.00 0.00 0.00 3.28
2181 2760 0.321653 AGCCAGCGTACTTCTTTGGG 60.322 55.000 0.00 0.00 0.00 4.12
2183 2762 1.305930 CCAGCGTACTTCTTTGGGCC 61.306 60.000 0.00 0.00 0.00 5.80
2187 2766 0.739813 CGTACTTCTTTGGGCCTCCG 60.740 60.000 4.53 0.00 35.24 4.63
2222 2801 3.535962 CTCCGGCCTCTCTGCTCC 61.536 72.222 0.00 0.00 0.00 4.70
2269 2848 2.194271 GACGTGACCCGAAATGAGATC 58.806 52.381 0.00 0.00 40.70 2.75
2311 2911 1.228769 TCTGGTGTAGGCTCGGTGT 60.229 57.895 0.00 0.00 0.00 4.16
2316 2916 1.303074 TGTAGGCTCGGTGTCGTCT 60.303 57.895 0.00 0.00 37.69 4.18
2317 2917 1.303799 TGTAGGCTCGGTGTCGTCTC 61.304 60.000 0.00 0.00 37.69 3.36
2343 2943 1.452145 ATGTTGCCCGTGACGCTTTT 61.452 50.000 0.00 0.00 0.00 2.27
2359 2959 1.466025 TTTTGCAGCAGAGCCTTGGG 61.466 55.000 0.00 0.00 0.00 4.12
2369 2969 2.125106 GCCTTGGGCGAGTAGGTG 60.125 66.667 0.00 0.00 39.62 4.00
2370 2970 2.955881 GCCTTGGGCGAGTAGGTGT 61.956 63.158 0.00 0.00 39.62 4.16
2376 2976 1.248785 GGGCGAGTAGGTGTCTGTGA 61.249 60.000 0.00 0.00 0.00 3.58
2494 3097 5.163237 TGACTAGGTATGGACAATTTAGCCC 60.163 44.000 0.00 0.00 0.00 5.19
2501 3104 1.824230 GGACAATTTAGCCCACATGCA 59.176 47.619 0.00 0.00 0.00 3.96
2502 3105 2.431782 GGACAATTTAGCCCACATGCAT 59.568 45.455 0.00 0.00 0.00 3.96
2503 3106 3.636300 GGACAATTTAGCCCACATGCATA 59.364 43.478 0.00 0.00 0.00 3.14
2505 3108 4.280819 ACAATTTAGCCCACATGCATACT 58.719 39.130 0.00 0.00 0.00 2.12
2506 3109 4.339247 ACAATTTAGCCCACATGCATACTC 59.661 41.667 0.00 0.00 0.00 2.59
2507 3110 3.931907 TTTAGCCCACATGCATACTCT 57.068 42.857 0.00 0.00 0.00 3.24
2509 3112 2.918712 AGCCCACATGCATACTCTAC 57.081 50.000 0.00 0.00 0.00 2.59
2510 3113 2.402564 AGCCCACATGCATACTCTACT 58.597 47.619 0.00 0.00 0.00 2.57
2511 3114 2.774234 AGCCCACATGCATACTCTACTT 59.226 45.455 0.00 0.00 0.00 2.24
2514 3117 4.626042 CCCACATGCATACTCTACTTCTC 58.374 47.826 0.00 0.00 0.00 2.87
2515 3118 4.100035 CCCACATGCATACTCTACTTCTCA 59.900 45.833 0.00 0.00 0.00 3.27
2516 3119 5.288015 CCACATGCATACTCTACTTCTCAG 58.712 45.833 0.00 0.00 0.00 3.35
2517 3120 5.068329 CCACATGCATACTCTACTTCTCAGA 59.932 44.000 0.00 0.00 0.00 3.27
2518 3121 6.207928 CACATGCATACTCTACTTCTCAGAG 58.792 44.000 0.00 0.00 44.28 3.35
2519 3122 4.909696 TGCATACTCTACTTCTCAGAGC 57.090 45.455 0.00 0.00 42.80 4.09
2520 3123 4.273318 TGCATACTCTACTTCTCAGAGCA 58.727 43.478 0.00 0.00 42.80 4.26
2521 3124 4.337836 TGCATACTCTACTTCTCAGAGCAG 59.662 45.833 0.00 0.00 42.80 4.24
2522 3125 4.261572 GCATACTCTACTTCTCAGAGCAGG 60.262 50.000 1.90 0.00 42.80 4.85
2523 3126 2.733956 ACTCTACTTCTCAGAGCAGGG 58.266 52.381 1.90 0.00 42.80 4.45
2528 3236 0.689080 CTTCTCAGAGCAGGGCCCTA 60.689 60.000 28.13 6.77 0.00 3.53
2550 3277 4.439057 ACTGAAACTCTGTCACGCTAAAA 58.561 39.130 0.00 0.00 0.00 1.52
2558 3285 1.868498 TGTCACGCTAAAACGAAAGGG 59.132 47.619 0.00 0.00 36.70 3.95
2560 3287 3.059166 GTCACGCTAAAACGAAAGGGTA 58.941 45.455 0.00 0.00 36.83 3.69
2562 3289 4.152938 GTCACGCTAAAACGAAAGGGTAAT 59.847 41.667 0.00 0.00 36.83 1.89
2565 3292 4.152938 ACGCTAAAACGAAAGGGTAATCAC 59.847 41.667 0.00 0.00 37.15 3.06
2566 3293 4.152759 CGCTAAAACGAAAGGGTAATCACA 59.847 41.667 0.00 0.00 34.06 3.58
2578 3326 4.761739 AGGGTAATCACACTGACATGTTTG 59.238 41.667 0.00 0.36 36.90 2.93
2579 3327 4.475944 GGTAATCACACTGACATGTTTGC 58.524 43.478 0.00 0.00 0.00 3.68
2580 3328 3.648339 AATCACACTGACATGTTTGCC 57.352 42.857 0.00 0.00 0.00 4.52
2582 3330 1.948834 TCACACTGACATGTTTGCCTG 59.051 47.619 0.00 0.00 0.00 4.85
2583 3331 1.677576 CACACTGACATGTTTGCCTGT 59.322 47.619 0.00 0.00 0.00 4.00
2584 3332 2.877786 CACACTGACATGTTTGCCTGTA 59.122 45.455 0.00 0.00 0.00 2.74
2585 3333 3.314913 CACACTGACATGTTTGCCTGTAA 59.685 43.478 0.00 0.00 0.00 2.41
2586 3334 4.022935 CACACTGACATGTTTGCCTGTAAT 60.023 41.667 0.00 0.00 0.00 1.89
2588 3336 3.436704 ACTGACATGTTTGCCTGTAATCG 59.563 43.478 0.00 0.00 0.00 3.34
2589 3337 3.407698 TGACATGTTTGCCTGTAATCGT 58.592 40.909 0.00 0.00 0.00 3.73
2591 3339 4.158384 GACATGTTTGCCTGTAATCGTTG 58.842 43.478 0.00 0.00 0.00 4.10
2592 3340 3.568007 ACATGTTTGCCTGTAATCGTTGT 59.432 39.130 0.00 0.00 0.00 3.32
2593 3341 4.037446 ACATGTTTGCCTGTAATCGTTGTT 59.963 37.500 0.00 0.00 0.00 2.83
2594 3342 4.640789 TGTTTGCCTGTAATCGTTGTTT 57.359 36.364 0.00 0.00 0.00 2.83
2600 3348 5.694816 TGCCTGTAATCGTTGTTTATGTTG 58.305 37.500 0.00 0.00 0.00 3.33
2603 3351 7.041303 TGCCTGTAATCGTTGTTTATGTTGTTA 60.041 33.333 0.00 0.00 0.00 2.41
2669 3417 1.891060 GCAGGTCGTTCAGCAAGTCG 61.891 60.000 0.00 0.00 0.00 4.18
2914 3711 2.002899 CGCACTTCACGTGACACAA 58.997 52.632 19.90 2.05 46.81 3.33
2916 3713 0.724549 GCACTTCACGTGACACAACA 59.275 50.000 19.90 0.76 46.81 3.33
2917 3714 1.529010 GCACTTCACGTGACACAACAC 60.529 52.381 19.90 0.42 46.81 3.32
2918 3715 1.729517 CACTTCACGTGACACAACACA 59.270 47.619 19.90 0.00 46.81 3.72
2919 3716 2.351418 CACTTCACGTGACACAACACAT 59.649 45.455 19.90 0.00 46.81 3.21
2920 3717 2.607635 ACTTCACGTGACACAACACATC 59.392 45.455 19.90 0.00 40.34 3.06
2921 3718 1.577468 TCACGTGACACAACACATCC 58.423 50.000 15.76 0.00 40.34 3.51
2922 3719 1.138069 TCACGTGACACAACACATCCT 59.862 47.619 15.76 0.00 40.34 3.24
2923 3720 1.261354 CACGTGACACAACACATCCTG 59.739 52.381 10.90 0.00 40.34 3.86
2924 3721 0.235665 CGTGACACAACACATCCTGC 59.764 55.000 6.37 0.00 40.34 4.85
2925 3722 1.597742 GTGACACAACACATCCTGCT 58.402 50.000 0.00 0.00 40.11 4.24
2977 3774 1.298339 GTTTCACACCGCACTGCAC 60.298 57.895 1.11 0.00 0.00 4.57
2983 3780 2.031163 ACCGCACTGCACTTCTCC 59.969 61.111 1.11 0.00 0.00 3.71
2988 3785 1.726853 GCACTGCACTTCTCCGTTAT 58.273 50.000 0.00 0.00 0.00 1.89
2989 3786 2.076863 GCACTGCACTTCTCCGTTATT 58.923 47.619 0.00 0.00 0.00 1.40
3017 3815 2.568623 TGAAAAGAGCCTCCCACTTC 57.431 50.000 0.00 0.00 0.00 3.01
3018 3816 1.774254 TGAAAAGAGCCTCCCACTTCA 59.226 47.619 0.00 0.00 0.00 3.02
3025 3823 0.315251 GCCTCCCACTTCAGTTTTGC 59.685 55.000 0.00 0.00 0.00 3.68
3066 3864 4.067972 ACACTGACACGGTGATAAAACT 57.932 40.909 16.29 0.00 42.79 2.66
3158 3977 4.023450 AGTCATGTGCTGTTTTCTGACATG 60.023 41.667 0.00 0.00 43.43 3.21
3162 3981 3.814842 TGTGCTGTTTTCTGACATGGTAG 59.185 43.478 0.00 0.00 0.00 3.18
3238 4058 3.573538 TGTTTGATTCCACATTGGGAGTG 59.426 43.478 0.00 0.00 38.32 3.51
3274 4094 2.702751 TTCCAGTACACGGGCACACG 62.703 60.000 0.00 0.00 40.31 4.49
3303 4123 5.812127 GCTTTGTCTGAATGTTCTTGGTTTT 59.188 36.000 0.00 0.00 0.00 2.43
3305 4125 4.681744 TGTCTGAATGTTCTTGGTTTTGC 58.318 39.130 0.00 0.00 0.00 3.68
3359 4283 2.677228 CTTGGATTCGGGGCCAGT 59.323 61.111 4.39 0.00 35.23 4.00
3424 4348 7.054855 CTGCTAGCAGTAACTTTTGACTAAG 57.945 40.000 32.46 5.47 39.10 2.18
3427 4351 6.147985 GCTAGCAGTAACTTTTGACTAAGCTT 59.852 38.462 10.63 3.48 30.24 3.74
3460 4384 3.305608 CCCATGCAAAGTTGAAAGGACTC 60.306 47.826 0.00 0.00 0.00 3.36
3514 4438 7.867445 TTTGCATAAAATCTTTCGTCCTTTC 57.133 32.000 0.00 0.00 0.00 2.62
3532 4456 4.201950 CCTTTCAACTGACAAAGTCCACTG 60.202 45.833 0.00 0.00 38.56 3.66
3543 4467 0.178981 AGTCCACTGGCACTTGCATT 60.179 50.000 3.15 0.00 44.36 3.56
3545 4469 0.895100 TCCACTGGCACTTGCATTCC 60.895 55.000 3.15 0.00 44.36 3.01
3549 4473 1.179152 CTGGCACTTGCATTCCATCA 58.821 50.000 3.15 0.00 44.36 3.07
3551 4475 2.167693 CTGGCACTTGCATTCCATCATT 59.832 45.455 3.15 0.00 44.36 2.57
3559 4483 5.521010 ACTTGCATTCCATCATTAATTTGCG 59.479 36.000 0.00 0.00 0.00 4.85
3577 4501 3.171987 CTTGCGTGTGCTAGCCTG 58.828 61.111 13.29 0.00 43.34 4.85
3650 4574 6.832520 TGCTAAAAGTAATTCATCCTGCAA 57.167 33.333 0.00 0.00 0.00 4.08
3708 4632 0.873054 CTGCTGGTCTTGAACTGCTG 59.127 55.000 16.26 12.69 0.00 4.41
3711 4635 1.678101 GCTGGTCTTGAACTGCTGTTT 59.322 47.619 10.54 0.00 36.39 2.83
3713 4637 2.945008 CTGGTCTTGAACTGCTGTTTGA 59.055 45.455 10.54 6.98 36.39 2.69
3714 4638 3.351740 TGGTCTTGAACTGCTGTTTGAA 58.648 40.909 10.54 6.15 36.39 2.69
3715 4639 3.953612 TGGTCTTGAACTGCTGTTTGAAT 59.046 39.130 10.54 0.00 36.39 2.57
3716 4640 4.402155 TGGTCTTGAACTGCTGTTTGAATT 59.598 37.500 10.54 0.00 36.39 2.17
3717 4641 5.105392 TGGTCTTGAACTGCTGTTTGAATTT 60.105 36.000 10.54 0.00 36.39 1.82
3718 4642 5.232838 GGTCTTGAACTGCTGTTTGAATTTG 59.767 40.000 10.54 0.00 36.39 2.32
3719 4643 5.807011 GTCTTGAACTGCTGTTTGAATTTGT 59.193 36.000 10.54 0.00 36.39 2.83
3720 4644 6.311200 GTCTTGAACTGCTGTTTGAATTTGTT 59.689 34.615 10.54 0.00 36.39 2.83
3721 4645 6.873076 TCTTGAACTGCTGTTTGAATTTGTTT 59.127 30.769 10.54 0.00 36.39 2.83
3722 4646 6.645700 TGAACTGCTGTTTGAATTTGTTTC 57.354 33.333 10.54 0.00 36.39 2.78
3723 4647 6.162079 TGAACTGCTGTTTGAATTTGTTTCA 58.838 32.000 10.54 0.00 42.62 2.69
3760 5269 3.624326 TTTGAATCTGTTTCGTGCCTG 57.376 42.857 0.00 0.00 37.13 4.85
4210 5737 1.422950 CCGTTCGGTCGTGTTTGTGT 61.423 55.000 2.82 0.00 0.00 3.72
4212 5739 0.587985 GTTCGGTCGTGTTTGTGTGC 60.588 55.000 0.00 0.00 0.00 4.57
4232 5759 1.687563 GTGTGTGTTTAGGCTTGGGT 58.312 50.000 0.00 0.00 0.00 4.51
4244 5771 1.442148 CTTGGGTCCGTAGCTAGGC 59.558 63.158 7.95 0.00 0.00 3.93
4253 5780 1.139058 CCGTAGCTAGGCTGGTGAATT 59.861 52.381 7.95 0.00 40.10 2.17
4254 5781 2.364324 CCGTAGCTAGGCTGGTGAATTA 59.636 50.000 7.95 0.00 40.10 1.40
4255 5782 3.381949 CGTAGCTAGGCTGGTGAATTAC 58.618 50.000 0.00 0.00 40.10 1.89
4256 5783 3.068307 CGTAGCTAGGCTGGTGAATTACT 59.932 47.826 0.00 0.00 40.10 2.24
4267 5816 4.650734 TGGTGAATTACTTGTGATGCAGA 58.349 39.130 0.00 0.00 0.00 4.26
4289 5838 0.681175 AGATGCAGGGTGTTTTTGCC 59.319 50.000 0.00 0.00 37.03 4.52
4298 5847 0.998669 GTGTTTTTGCCTGTGTGTGC 59.001 50.000 0.00 0.00 0.00 4.57
4308 5857 1.212455 CTGTGTGTGCGCGTTAGTGA 61.212 55.000 8.43 0.00 0.00 3.41
4370 5924 4.437682 TCTTTGATGGGGATGTGGTATC 57.562 45.455 0.00 0.00 0.00 2.24
4390 5944 4.210724 TCGAATGGGTCTTAACGGAAAT 57.789 40.909 0.00 0.00 0.00 2.17
4391 5945 3.936453 TCGAATGGGTCTTAACGGAAATG 59.064 43.478 0.00 0.00 0.00 2.32
4393 5947 2.500392 TGGGTCTTAACGGAAATGGG 57.500 50.000 0.00 0.00 0.00 4.00
4394 5948 1.986631 TGGGTCTTAACGGAAATGGGA 59.013 47.619 0.00 0.00 0.00 4.37
4395 5949 2.578940 TGGGTCTTAACGGAAATGGGAT 59.421 45.455 0.00 0.00 0.00 3.85
4397 5951 4.227754 TGGGTCTTAACGGAAATGGGATTA 59.772 41.667 0.00 0.00 0.00 1.75
4398 5952 4.820173 GGGTCTTAACGGAAATGGGATTAG 59.180 45.833 0.00 0.00 0.00 1.73
4417 5971 8.426489 GGGATTAGTAGTCACATGGTAATTACA 58.574 37.037 17.16 4.33 0.00 2.41
4468 6022 2.162809 GTGAAAGTGGTGTTCGTTTGGT 59.837 45.455 0.00 0.00 0.00 3.67
4471 6025 1.385528 AGTGGTGTTCGTTTGGTTCC 58.614 50.000 0.00 0.00 0.00 3.62
4479 6033 1.323412 TCGTTTGGTTCCCAACATGG 58.677 50.000 0.00 0.00 43.82 3.66
4483 6037 1.470996 TTGGTTCCCAACATGGCTGC 61.471 55.000 0.00 0.00 38.75 5.25
4507 6061 2.617274 GCGTTCCAGGTTCAGTGCC 61.617 63.158 0.00 0.00 0.00 5.01
4517 6071 1.600636 TTCAGTGCCCGCTTGGAAG 60.601 57.895 0.00 0.00 35.39 3.46
4521 6075 0.107654 AGTGCCCGCTTGGAAGATAC 60.108 55.000 0.00 0.00 35.39 2.24
4522 6076 0.107654 GTGCCCGCTTGGAAGATACT 60.108 55.000 0.00 0.00 35.39 2.12
4524 6078 0.533085 GCCCGCTTGGAAGATACTCC 60.533 60.000 0.00 0.00 35.39 3.85
4525 6079 1.123928 CCCGCTTGGAAGATACTCCT 58.876 55.000 0.00 0.00 36.35 3.69
4527 6081 2.483889 CCCGCTTGGAAGATACTCCTTC 60.484 54.545 0.00 0.00 41.26 3.46
4528 6082 2.432510 CCGCTTGGAAGATACTCCTTCT 59.567 50.000 0.00 0.00 41.60 2.85
4529 6083 3.452474 CGCTTGGAAGATACTCCTTCTG 58.548 50.000 0.00 0.00 41.60 3.02
4531 6085 4.621747 CGCTTGGAAGATACTCCTTCTGTT 60.622 45.833 0.00 0.00 41.60 3.16
4532 6086 4.873259 GCTTGGAAGATACTCCTTCTGTTC 59.127 45.833 0.00 0.00 41.60 3.18
4533 6087 4.720649 TGGAAGATACTCCTTCTGTTCG 57.279 45.455 0.00 0.00 41.60 3.95
4534 6088 3.447586 TGGAAGATACTCCTTCTGTTCGG 59.552 47.826 0.00 0.00 41.60 4.30
4536 6090 4.159879 GGAAGATACTCCTTCTGTTCGGAA 59.840 45.833 0.00 0.00 41.60 4.30
4537 6091 5.337330 GGAAGATACTCCTTCTGTTCGGAAA 60.337 44.000 0.00 0.00 41.60 3.13
4538 6092 5.941555 AGATACTCCTTCTGTTCGGAAAT 57.058 39.130 0.00 0.00 0.00 2.17
4539 6093 7.417570 GGAAGATACTCCTTCTGTTCGGAAATA 60.418 40.741 0.00 0.00 41.60 1.40
4540 6094 6.807789 AGATACTCCTTCTGTTCGGAAATAC 58.192 40.000 0.00 0.00 0.00 1.89
4543 6097 5.238583 ACTCCTTCTGTTCGGAAATACTTG 58.761 41.667 0.00 0.00 0.00 3.16
4547 6101 5.701290 CCTTCTGTTCGGAAATACTTGTCTT 59.299 40.000 0.00 0.00 0.00 3.01
4548 6102 6.872020 CCTTCTGTTCGGAAATACTTGTCTTA 59.128 38.462 0.00 0.00 0.00 2.10
4550 6104 8.665643 TTCTGTTCGGAAATACTTGTCTTAAA 57.334 30.769 0.00 0.00 0.00 1.52
4552 6106 9.111613 TCTGTTCGGAAATACTTGTCTTAAAAA 57.888 29.630 0.00 0.00 0.00 1.94
4553 6107 9.893305 CTGTTCGGAAATACTTGTCTTAAAAAT 57.107 29.630 0.00 0.00 0.00 1.82
4554 6108 9.672086 TGTTCGGAAATACTTGTCTTAAAAATG 57.328 29.630 0.00 0.00 0.00 2.32
4556 6110 8.398878 TCGGAAATACTTGTCTTAAAAATGGT 57.601 30.769 0.00 0.00 0.00 3.55
4557 6111 8.852135 TCGGAAATACTTGTCTTAAAAATGGTT 58.148 29.630 0.00 0.00 0.00 3.67
4559 6113 9.758651 GGAAATACTTGTCTTAAAAATGGTTGT 57.241 29.630 0.00 0.00 0.00 3.32
4580 6134 9.708092 GGTTGTATCTAGACTTGTTTTAGTTCT 57.292 33.333 0.00 0.00 0.00 3.01
4590 6144 9.708092 AGACTTGTTTTAGTTCTAGATACAACC 57.292 33.333 0.00 0.00 0.00 3.77
4591 6145 9.485206 GACTTGTTTTAGTTCTAGATACAACCA 57.515 33.333 0.00 0.00 0.00 3.67
4602 6156 9.871238 GTTCTAGATACAACCATTTCTAAGACA 57.129 33.333 0.00 0.00 0.00 3.41
4607 6161 9.965902 AGATACAACCATTTCTAAGACAAGAAT 57.034 29.630 0.00 0.00 35.48 2.40
4611 6165 8.360390 ACAACCATTTCTAAGACAAGAATTTCC 58.640 33.333 0.00 0.00 35.48 3.13
4612 6166 7.145932 ACCATTTCTAAGACAAGAATTTCCG 57.854 36.000 0.00 0.00 35.48 4.30
4613 6167 6.940298 ACCATTTCTAAGACAAGAATTTCCGA 59.060 34.615 0.00 0.00 35.48 4.55
4615 6169 7.750903 CCATTTCTAAGACAAGAATTTCCGAAC 59.249 37.037 0.00 0.00 35.48 3.95
4616 6170 6.462073 TTCTAAGACAAGAATTTCCGAACG 57.538 37.500 0.00 0.00 30.54 3.95
4617 6171 4.927425 TCTAAGACAAGAATTTCCGAACGG 59.073 41.667 6.94 6.94 0.00 4.44
4621 6175 1.737793 CAAGAATTTCCGAACGGAGGG 59.262 52.381 15.34 0.00 46.06 4.30
4622 6176 1.272807 AGAATTTCCGAACGGAGGGA 58.727 50.000 15.34 7.17 46.06 4.20
4623 6177 1.207329 AGAATTTCCGAACGGAGGGAG 59.793 52.381 15.34 0.00 46.06 4.30
4624 6178 0.981943 AATTTCCGAACGGAGGGAGT 59.018 50.000 15.34 3.79 46.06 3.85
4625 6179 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
4626 6180 0.890683 TTTCCGAACGGAGGGAGTAC 59.109 55.000 15.34 0.00 46.06 2.73
4627 6181 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
4628 6182 0.911769 TCCGAACGGAGGGAGTACTA 59.088 55.000 12.04 0.00 39.76 1.82
4629 6183 1.492176 TCCGAACGGAGGGAGTACTAT 59.508 52.381 12.04 0.00 39.76 2.12
4630 6184 2.705658 TCCGAACGGAGGGAGTACTATA 59.294 50.000 12.04 0.00 39.76 1.31
4631 6185 2.810852 CCGAACGGAGGGAGTACTATAC 59.189 54.545 7.53 0.00 37.50 1.47
4632 6186 3.470709 CGAACGGAGGGAGTACTATACA 58.529 50.000 0.00 0.00 0.00 2.29
4633 6187 3.879295 CGAACGGAGGGAGTACTATACAA 59.121 47.826 0.00 0.00 0.00 2.41
4634 6188 4.336433 CGAACGGAGGGAGTACTATACAAA 59.664 45.833 0.00 0.00 0.00 2.83
4635 6189 5.505324 CGAACGGAGGGAGTACTATACAAAG 60.505 48.000 0.00 0.00 0.00 2.77
4637 6191 3.304525 CGGAGGGAGTACTATACAAAGCG 60.305 52.174 0.00 0.00 0.00 4.68
4638 6192 3.005578 GGAGGGAGTACTATACAAAGCGG 59.994 52.174 0.00 0.00 0.00 5.52
4639 6193 3.635836 GAGGGAGTACTATACAAAGCGGT 59.364 47.826 0.00 0.00 0.00 5.68
4640 6194 4.028825 AGGGAGTACTATACAAAGCGGTT 58.971 43.478 0.00 0.00 0.00 4.44
4641 6195 5.203528 AGGGAGTACTATACAAAGCGGTTA 58.796 41.667 0.00 0.00 0.00 2.85
4659 6419 5.510671 CGGTTATTTTCCCATGAATCTTCG 58.489 41.667 0.00 0.00 0.00 3.79
4679 6439 7.535139 TCTTCGAATTCAATTCCAATAACCAC 58.465 34.615 6.22 0.00 35.89 4.16
4686 6446 4.044065 TCAATTCCAATAACCACCCACTCT 59.956 41.667 0.00 0.00 0.00 3.24
4764 6524 8.815565 TCCAAATTGGCACAGTATCTTTATTA 57.184 30.769 7.24 0.00 42.39 0.98
4789 6549 8.737168 AATATGCAAAGAAAGCTACTATGACA 57.263 30.769 0.00 0.00 0.00 3.58
4790 6550 8.737168 ATATGCAAAGAAAGCTACTATGACAA 57.263 30.769 0.00 0.00 0.00 3.18
4791 6551 6.875948 TGCAAAGAAAGCTACTATGACAAA 57.124 33.333 0.00 0.00 0.00 2.83
4792 6552 6.668323 TGCAAAGAAAGCTACTATGACAAAC 58.332 36.000 0.00 0.00 0.00 2.93
4812 6576 6.127758 ACAAACAACAACATGTAGACACACAT 60.128 34.615 0.00 0.00 39.76 3.21
4961 6728 2.270923 TGCAGTAACAATAGCAGAGCG 58.729 47.619 0.00 0.00 32.48 5.03
4990 6757 5.233083 TCAGTTGGAGATGAGAACATTGT 57.767 39.130 0.00 0.00 36.82 2.71
4997 6764 4.162320 GGAGATGAGAACATTGTACTCCCA 59.838 45.833 0.00 0.00 37.61 4.37
4998 6765 5.338381 GGAGATGAGAACATTGTACTCCCAA 60.338 44.000 0.00 0.00 37.61 4.12
5008 6775 4.669206 TTGTACTCCCAACGACTTGTAA 57.331 40.909 0.00 0.00 0.00 2.41
5022 6789 5.288712 ACGACTTGTAATAAATCAGCGACAG 59.711 40.000 0.00 0.00 0.00 3.51
5078 6846 2.247358 TGTGTCTCAGAGGTGCATGTA 58.753 47.619 0.00 0.00 0.00 2.29
5109 6877 6.763135 GTGATGGCTGATGAGTACTTGATTTA 59.237 38.462 0.00 0.00 0.00 1.40
5140 6909 9.944376 AAGAAGTTAGCACTAATCATGTTCTTA 57.056 29.630 0.00 0.00 30.68 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.045242 TGACCTCCGCTAGACGCT 60.045 61.111 0.00 0.00 41.76 5.07
2 3 2.102553 GTGACCTCCGCTAGACGC 59.897 66.667 0.00 0.00 41.76 5.19
3 4 2.403987 CGTGACCTCCGCTAGACG 59.596 66.667 0.00 0.00 43.15 4.18
10 11 2.418910 ATCTCTGGCGTGACCTCCG 61.419 63.158 0.00 0.00 40.22 4.63
11 12 1.142748 CATCTCTGGCGTGACCTCC 59.857 63.158 0.00 0.00 40.22 4.30
12 13 0.102120 CTCATCTCTGGCGTGACCTC 59.898 60.000 0.00 0.00 40.22 3.85
13 14 1.954362 GCTCATCTCTGGCGTGACCT 61.954 60.000 0.00 0.00 40.22 3.85
14 15 1.520342 GCTCATCTCTGGCGTGACC 60.520 63.158 0.00 0.00 39.84 4.02
15 16 0.805322 CAGCTCATCTCTGGCGTGAC 60.805 60.000 0.00 0.00 0.00 3.67
16 17 0.967380 TCAGCTCATCTCTGGCGTGA 60.967 55.000 0.00 0.00 32.63 4.35
17 18 0.528033 CTCAGCTCATCTCTGGCGTG 60.528 60.000 0.00 0.00 32.63 5.34
18 19 1.815196 CTCAGCTCATCTCTGGCGT 59.185 57.895 0.00 0.00 32.63 5.68
19 20 1.592131 GCTCAGCTCATCTCTGGCG 60.592 63.158 0.00 0.00 32.63 5.69
20 21 1.227615 GGCTCAGCTCATCTCTGGC 60.228 63.158 0.00 0.00 32.63 4.85
21 22 0.105224 CAGGCTCAGCTCATCTCTGG 59.895 60.000 0.00 0.00 32.63 3.86
22 23 1.067974 CTCAGGCTCAGCTCATCTCTG 59.932 57.143 0.00 0.00 0.00 3.35
23 24 1.405872 CTCAGGCTCAGCTCATCTCT 58.594 55.000 0.00 0.00 0.00 3.10
24 25 0.249573 GCTCAGGCTCAGCTCATCTC 60.250 60.000 1.97 0.00 33.75 2.75
25 26 1.688269 GGCTCAGGCTCAGCTCATCT 61.688 60.000 11.05 0.00 37.05 2.90
26 27 1.227615 GGCTCAGGCTCAGCTCATC 60.228 63.158 11.05 0.00 37.05 2.92
27 28 1.689932 AGGCTCAGGCTCAGCTCAT 60.690 57.895 11.05 0.00 37.05 2.90
28 29 2.284478 AGGCTCAGGCTCAGCTCA 60.284 61.111 11.05 0.00 37.05 4.26
29 30 2.187424 CAGGCTCAGGCTCAGCTC 59.813 66.667 11.05 0.00 35.88 4.09
30 31 2.284478 TCAGGCTCAGGCTCAGCT 60.284 61.111 11.05 0.00 35.88 4.24
31 32 2.187424 CTCAGGCTCAGGCTCAGC 59.813 66.667 0.00 0.00 35.88 4.26
32 33 2.187424 GCTCAGGCTCAGGCTCAG 59.813 66.667 0.00 0.00 35.88 3.35
33 34 3.397439 GGCTCAGGCTCAGGCTCA 61.397 66.667 4.26 0.00 35.88 4.26
34 35 3.082701 AGGCTCAGGCTCAGGCTC 61.083 66.667 9.14 0.00 43.01 4.70
36 37 3.388703 CTCAGGCTCAGGCTCAGGC 62.389 68.421 3.01 3.01 35.88 4.85
37 38 2.901813 CTCAGGCTCAGGCTCAGG 59.098 66.667 0.00 0.00 35.88 3.86
38 39 2.187424 GCTCAGGCTCAGGCTCAG 59.813 66.667 0.00 0.00 35.88 3.35
39 40 3.767806 CGCTCAGGCTCAGGCTCA 61.768 66.667 0.00 0.00 35.88 4.26
43 44 2.800541 TATGGCGCTCAGGCTCAGG 61.801 63.158 7.64 0.00 46.88 3.86
44 45 1.593750 GTATGGCGCTCAGGCTCAG 60.594 63.158 7.64 0.00 46.88 3.35
158 169 4.383649 GCACGAACCGCTATAATTATTCGA 59.616 41.667 18.50 0.00 40.96 3.71
192 203 3.265791 AGGAGCTTTATCGAGCAACAAG 58.734 45.455 0.00 0.00 45.12 3.16
213 224 7.054751 TGCTACTTGCTAGTGATAGAGTAAGA 58.945 38.462 11.27 0.00 43.37 2.10
228 239 3.131400 GCTAGGAGTACTTGCTACTTGCT 59.869 47.826 1.04 0.00 42.30 3.91
328 362 2.125512 GCTTGTCGATGAGCGGGT 60.126 61.111 7.15 0.00 41.33 5.28
335 369 4.847633 TCTTCAGTTTTTGCTTGTCGATG 58.152 39.130 0.00 0.00 0.00 3.84
336 370 4.816385 TCTCTTCAGTTTTTGCTTGTCGAT 59.184 37.500 0.00 0.00 0.00 3.59
337 371 4.188462 TCTCTTCAGTTTTTGCTTGTCGA 58.812 39.130 0.00 0.00 0.00 4.20
338 372 4.271049 TCTCTCTTCAGTTTTTGCTTGTCG 59.729 41.667 0.00 0.00 0.00 4.35
339 373 5.741388 TCTCTCTTCAGTTTTTGCTTGTC 57.259 39.130 0.00 0.00 0.00 3.18
340 374 6.325596 GTTTCTCTCTTCAGTTTTTGCTTGT 58.674 36.000 0.00 0.00 0.00 3.16
341 375 5.745769 GGTTTCTCTCTTCAGTTTTTGCTTG 59.254 40.000 0.00 0.00 0.00 4.01
342 376 5.418840 TGGTTTCTCTCTTCAGTTTTTGCTT 59.581 36.000 0.00 0.00 0.00 3.91
343 377 4.949856 TGGTTTCTCTCTTCAGTTTTTGCT 59.050 37.500 0.00 0.00 0.00 3.91
344 378 5.248870 TGGTTTCTCTCTTCAGTTTTTGC 57.751 39.130 0.00 0.00 0.00 3.68
345 379 5.739161 CGTTGGTTTCTCTCTTCAGTTTTTG 59.261 40.000 0.00 0.00 0.00 2.44
346 380 5.646360 TCGTTGGTTTCTCTCTTCAGTTTTT 59.354 36.000 0.00 0.00 0.00 1.94
351 385 5.734855 TTTTCGTTGGTTTCTCTCTTCAG 57.265 39.130 0.00 0.00 0.00 3.02
391 427 1.337703 AGAGCTGATCGATGAGCACTC 59.662 52.381 33.40 24.06 39.61 3.51
518 554 1.593006 CGTCTGTTTACATCCATCCGC 59.407 52.381 0.00 0.00 0.00 5.54
519 555 2.159156 TCCGTCTGTTTACATCCATCCG 60.159 50.000 0.00 0.00 0.00 4.18
521 557 2.858344 CGTCCGTCTGTTTACATCCATC 59.142 50.000 0.00 0.00 0.00 3.51
522 558 2.494471 TCGTCCGTCTGTTTACATCCAT 59.506 45.455 0.00 0.00 0.00 3.41
524 560 2.642139 TCGTCCGTCTGTTTACATCC 57.358 50.000 0.00 0.00 0.00 3.51
526 562 4.182693 TGAATCGTCCGTCTGTTTACAT 57.817 40.909 0.00 0.00 0.00 2.29
527 563 3.646611 TGAATCGTCCGTCTGTTTACA 57.353 42.857 0.00 0.00 0.00 2.41
528 564 3.241995 GCATGAATCGTCCGTCTGTTTAC 60.242 47.826 0.00 0.00 0.00 2.01
529 565 2.927477 GCATGAATCGTCCGTCTGTTTA 59.073 45.455 0.00 0.00 0.00 2.01
530 566 1.732259 GCATGAATCGTCCGTCTGTTT 59.268 47.619 0.00 0.00 0.00 2.83
531 567 1.337728 TGCATGAATCGTCCGTCTGTT 60.338 47.619 0.00 0.00 0.00 3.16
532 568 0.246360 TGCATGAATCGTCCGTCTGT 59.754 50.000 0.00 0.00 0.00 3.41
533 569 0.647410 GTGCATGAATCGTCCGTCTG 59.353 55.000 0.00 0.00 0.00 3.51
534 570 0.802222 CGTGCATGAATCGTCCGTCT 60.802 55.000 0.00 0.00 0.00 4.18
535 571 0.800683 TCGTGCATGAATCGTCCGTC 60.801 55.000 6.04 0.00 0.00 4.79
536 572 1.076533 GTCGTGCATGAATCGTCCGT 61.077 55.000 10.93 0.00 0.00 4.69
537 573 1.631072 GTCGTGCATGAATCGTCCG 59.369 57.895 10.93 0.00 0.00 4.79
538 574 0.800683 TCGTCGTGCATGAATCGTCC 60.801 55.000 10.93 0.00 0.00 4.79
539 575 1.071894 CATCGTCGTGCATGAATCGTC 60.072 52.381 10.93 0.00 0.00 4.20
540 576 0.923403 CATCGTCGTGCATGAATCGT 59.077 50.000 10.93 0.00 0.00 3.73
541 577 0.923403 ACATCGTCGTGCATGAATCG 59.077 50.000 10.93 11.31 0.00 3.34
542 578 4.514545 TTTACATCGTCGTGCATGAATC 57.485 40.909 10.93 0.00 0.00 2.52
543 579 4.024893 GGATTTACATCGTCGTGCATGAAT 60.025 41.667 10.93 0.00 0.00 2.57
544 580 3.308595 GGATTTACATCGTCGTGCATGAA 59.691 43.478 10.93 0.00 0.00 2.57
545 581 2.863740 GGATTTACATCGTCGTGCATGA 59.136 45.455 3.97 3.97 0.00 3.07
546 582 2.607180 TGGATTTACATCGTCGTGCATG 59.393 45.455 0.00 0.00 0.00 4.06
547 583 2.866156 CTGGATTTACATCGTCGTGCAT 59.134 45.455 0.00 0.00 0.00 3.96
548 584 2.267426 CTGGATTTACATCGTCGTGCA 58.733 47.619 0.00 0.00 0.00 4.57
549 585 1.004927 GCTGGATTTACATCGTCGTGC 60.005 52.381 0.00 0.00 0.00 5.34
550 586 1.593006 GGCTGGATTTACATCGTCGTG 59.407 52.381 0.00 0.00 0.00 4.35
551 587 1.801395 CGGCTGGATTTACATCGTCGT 60.801 52.381 0.00 0.00 0.00 4.34
552 588 0.852777 CGGCTGGATTTACATCGTCG 59.147 55.000 0.00 0.00 0.00 5.12
553 589 0.582005 GCGGCTGGATTTACATCGTC 59.418 55.000 0.00 0.00 0.00 4.20
554 590 0.107897 TGCGGCTGGATTTACATCGT 60.108 50.000 0.00 0.00 0.00 3.73
555 591 0.304705 GTGCGGCTGGATTTACATCG 59.695 55.000 0.00 0.00 0.00 3.84
556 592 1.378531 TGTGCGGCTGGATTTACATC 58.621 50.000 0.00 0.00 0.00 3.06
557 593 1.677576 CATGTGCGGCTGGATTTACAT 59.322 47.619 0.00 0.00 0.00 2.29
558 594 1.093972 CATGTGCGGCTGGATTTACA 58.906 50.000 0.00 0.00 0.00 2.41
559 595 1.094785 ACATGTGCGGCTGGATTTAC 58.905 50.000 0.00 0.00 0.00 2.01
560 596 2.093181 ACTACATGTGCGGCTGGATTTA 60.093 45.455 9.11 0.00 0.00 1.40
561 597 1.340017 ACTACATGTGCGGCTGGATTT 60.340 47.619 9.11 0.00 0.00 2.17
562 598 0.253044 ACTACATGTGCGGCTGGATT 59.747 50.000 9.11 0.00 0.00 3.01
563 599 0.179073 GACTACATGTGCGGCTGGAT 60.179 55.000 9.11 0.00 0.00 3.41
564 600 1.218047 GACTACATGTGCGGCTGGA 59.782 57.895 9.11 0.00 0.00 3.86
565 601 2.167219 CGACTACATGTGCGGCTGG 61.167 63.158 9.11 0.00 0.00 4.85
566 602 1.153842 TCGACTACATGTGCGGCTG 60.154 57.895 9.11 0.00 0.00 4.85
567 603 1.153823 GTCGACTACATGTGCGGCT 60.154 57.895 9.11 0.00 0.00 5.52
568 604 0.736325 AAGTCGACTACATGTGCGGC 60.736 55.000 20.39 11.10 0.00 6.53
569 605 2.554806 TAAGTCGACTACATGTGCGG 57.445 50.000 20.39 1.11 0.00 5.69
570 606 3.303495 CCTTTAAGTCGACTACATGTGCG 59.697 47.826 20.39 9.78 0.00 5.34
571 607 3.617263 CCCTTTAAGTCGACTACATGTGC 59.383 47.826 20.39 0.00 0.00 4.57
572 608 3.617263 GCCCTTTAAGTCGACTACATGTG 59.383 47.826 20.39 8.00 0.00 3.21
573 609 3.259876 TGCCCTTTAAGTCGACTACATGT 59.740 43.478 20.39 5.08 0.00 3.21
574 610 3.857052 TGCCCTTTAAGTCGACTACATG 58.143 45.455 20.39 10.23 0.00 3.21
575 611 4.251268 GTTGCCCTTTAAGTCGACTACAT 58.749 43.478 20.39 5.93 0.00 2.29
576 612 3.069872 TGTTGCCCTTTAAGTCGACTACA 59.930 43.478 20.39 13.00 0.00 2.74
577 613 3.656559 TGTTGCCCTTTAAGTCGACTAC 58.343 45.455 20.39 10.36 0.00 2.73
578 614 3.863400 GCTGTTGCCCTTTAAGTCGACTA 60.863 47.826 20.39 0.04 0.00 2.59
579 615 2.767505 CTGTTGCCCTTTAAGTCGACT 58.232 47.619 13.58 13.58 0.00 4.18
580 616 1.197036 GCTGTTGCCCTTTAAGTCGAC 59.803 52.381 7.70 7.70 0.00 4.20
581 617 1.519408 GCTGTTGCCCTTTAAGTCGA 58.481 50.000 0.00 0.00 0.00 4.20
593 629 1.226128 GAAATCGAGCGGCTGTTGC 60.226 57.895 7.50 0.00 38.76 4.17
594 630 0.729116 ATGAAATCGAGCGGCTGTTG 59.271 50.000 7.50 0.00 0.00 3.33
595 631 0.729116 CATGAAATCGAGCGGCTGTT 59.271 50.000 7.50 0.00 0.00 3.16
596 632 1.091771 CCATGAAATCGAGCGGCTGT 61.092 55.000 7.50 0.00 0.00 4.40
597 633 1.091771 ACCATGAAATCGAGCGGCTG 61.092 55.000 7.50 0.00 0.00 4.85
598 634 0.811616 GACCATGAAATCGAGCGGCT 60.812 55.000 0.00 0.00 0.00 5.52
599 635 1.643832 GACCATGAAATCGAGCGGC 59.356 57.895 0.00 0.00 0.00 6.53
600 636 0.806102 ACGACCATGAAATCGAGCGG 60.806 55.000 17.33 0.00 40.86 5.52
601 637 0.298707 CACGACCATGAAATCGAGCG 59.701 55.000 17.33 0.00 40.86 5.03
602 638 0.026803 GCACGACCATGAAATCGAGC 59.973 55.000 17.33 16.61 45.12 5.03
603 639 0.298707 CGCACGACCATGAAATCGAG 59.701 55.000 17.33 12.00 40.86 4.04
604 640 0.109039 TCGCACGACCATGAAATCGA 60.109 50.000 17.33 0.00 40.86 3.59
605 641 0.718904 TTCGCACGACCATGAAATCG 59.281 50.000 11.06 11.06 43.97 3.34
606 642 2.892373 TTTCGCACGACCATGAAATC 57.108 45.000 0.00 0.00 0.00 2.17
607 643 3.727673 CGATTTTCGCACGACCATGAAAT 60.728 43.478 0.00 0.00 31.14 2.17
608 644 2.412195 CGATTTTCGCACGACCATGAAA 60.412 45.455 0.00 0.00 31.14 2.69
609 645 1.127766 CGATTTTCGCACGACCATGAA 59.872 47.619 0.00 0.00 31.14 2.57
610 646 0.718904 CGATTTTCGCACGACCATGA 59.281 50.000 0.00 0.00 31.14 3.07
611 647 0.247655 CCGATTTTCGCACGACCATG 60.248 55.000 0.00 0.00 38.82 3.66
612 648 0.672401 ACCGATTTTCGCACGACCAT 60.672 50.000 0.00 0.00 38.82 3.55
613 649 0.881159 AACCGATTTTCGCACGACCA 60.881 50.000 0.00 0.00 38.82 4.02
614 650 0.452122 CAACCGATTTTCGCACGACC 60.452 55.000 0.00 0.00 38.82 4.79
615 651 1.058057 GCAACCGATTTTCGCACGAC 61.058 55.000 0.00 0.00 38.82 4.34
616 652 1.205568 GCAACCGATTTTCGCACGA 59.794 52.632 0.00 0.00 38.82 4.35
617 653 1.082431 TGCAACCGATTTTCGCACG 60.082 52.632 0.00 0.00 38.82 5.34
618 654 2.420097 GTGCAACCGATTTTCGCAC 58.580 52.632 0.00 0.00 45.25 5.34
619 655 0.595588 ATGTGCAACCGATTTTCGCA 59.404 45.000 0.00 0.00 38.82 5.10
620 656 0.984109 CATGTGCAACCGATTTTCGC 59.016 50.000 0.00 0.00 38.82 4.70
621 657 2.241722 GACATGTGCAACCGATTTTCG 58.758 47.619 1.15 0.00 40.07 3.46
622 658 2.241722 CGACATGTGCAACCGATTTTC 58.758 47.619 1.15 0.00 34.36 2.29
623 659 1.606668 ACGACATGTGCAACCGATTTT 59.393 42.857 1.15 0.00 34.36 1.82
624 660 1.196808 GACGACATGTGCAACCGATTT 59.803 47.619 1.15 0.00 34.36 2.17
625 661 0.796312 GACGACATGTGCAACCGATT 59.204 50.000 1.15 0.00 34.36 3.34
626 662 0.037326 AGACGACATGTGCAACCGAT 60.037 50.000 1.15 0.00 34.36 4.18
627 663 0.943835 CAGACGACATGTGCAACCGA 60.944 55.000 1.15 0.00 34.36 4.69
628 664 1.221466 ACAGACGACATGTGCAACCG 61.221 55.000 1.15 2.09 34.36 4.44
629 665 0.235665 CACAGACGACATGTGCAACC 59.764 55.000 1.15 0.00 41.39 3.77
630 666 0.235665 CCACAGACGACATGTGCAAC 59.764 55.000 1.15 0.00 45.37 4.17
631 667 0.105778 TCCACAGACGACATGTGCAA 59.894 50.000 1.15 2.79 45.37 4.08
632 668 0.319813 CTCCACAGACGACATGTGCA 60.320 55.000 1.15 0.00 45.37 4.57
633 669 1.630244 GCTCCACAGACGACATGTGC 61.630 60.000 1.15 0.00 45.37 4.57
634 670 0.319813 TGCTCCACAGACGACATGTG 60.320 55.000 1.15 10.90 46.11 3.21
635 671 2.049435 TGCTCCACAGACGACATGT 58.951 52.632 0.00 0.00 0.00 3.21
636 672 4.994744 TGCTCCACAGACGACATG 57.005 55.556 0.00 0.00 0.00 3.21
645 681 1.891919 GCAACGGAACTGCTCCACA 60.892 57.895 0.00 0.00 45.74 4.17
646 682 1.444119 TTGCAACGGAACTGCTCCAC 61.444 55.000 0.00 0.00 45.74 4.02
647 683 0.749818 TTTGCAACGGAACTGCTCCA 60.750 50.000 0.00 0.00 45.74 3.86
648 684 0.317854 GTTTGCAACGGAACTGCTCC 60.318 55.000 0.00 0.00 40.59 4.70
649 685 3.164028 GTTTGCAACGGAACTGCTC 57.836 52.632 0.00 0.00 40.59 4.26
679 715 4.477975 GAGACGGTCGTGGGCTCG 62.478 72.222 0.00 0.00 0.00 5.03
680 716 4.477975 CGAGACGGTCGTGGGCTC 62.478 72.222 0.00 0.93 44.20 4.70
762 798 2.435410 CGGTAGGTTGGGTTCCGC 60.435 66.667 0.00 0.00 35.01 5.54
848 886 1.646540 CCTAGAGAGTGCGAGCGAG 59.353 63.158 0.00 0.00 0.00 5.03
849 887 2.473760 GCCTAGAGAGTGCGAGCGA 61.474 63.158 0.00 0.00 0.00 4.93
850 888 2.025441 GCCTAGAGAGTGCGAGCG 59.975 66.667 0.00 0.00 0.00 5.03
973 1013 0.320247 CGAACAAGTCCTGCTCTGCT 60.320 55.000 0.00 0.00 0.00 4.24
974 1014 0.319900 TCGAACAAGTCCTGCTCTGC 60.320 55.000 0.00 0.00 0.00 4.26
975 1015 1.423395 GTCGAACAAGTCCTGCTCTG 58.577 55.000 0.00 0.00 0.00 3.35
976 1016 0.318762 GGTCGAACAAGTCCTGCTCT 59.681 55.000 0.00 0.00 0.00 4.09
977 1017 1.009389 CGGTCGAACAAGTCCTGCTC 61.009 60.000 0.00 0.00 0.00 4.26
978 1018 1.006102 CGGTCGAACAAGTCCTGCT 60.006 57.895 0.00 0.00 0.00 4.24
979 1019 2.027625 CCGGTCGAACAAGTCCTGC 61.028 63.158 0.00 0.00 0.00 4.85
980 1020 2.027625 GCCGGTCGAACAAGTCCTG 61.028 63.158 1.90 0.00 0.00 3.86
981 1021 2.035237 TTGCCGGTCGAACAAGTCCT 62.035 55.000 1.90 0.00 0.00 3.85
984 1024 1.234615 CCATTGCCGGTCGAACAAGT 61.235 55.000 1.90 0.00 0.00 3.16
1227 1267 0.250770 GAGCAAGAACGGAAAGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
1228 1268 0.960861 GGAGCAAGAACGGAAAGGGG 60.961 60.000 0.00 0.00 0.00 4.79
1230 1270 0.875059 GTGGAGCAAGAACGGAAAGG 59.125 55.000 0.00 0.00 0.00 3.11
1234 1274 2.342279 CGGTGGAGCAAGAACGGA 59.658 61.111 0.00 0.00 0.00 4.69
1257 1297 2.100631 GCACGGCGAGCAGTAATGT 61.101 57.895 23.98 0.00 0.00 2.71
1279 1319 1.924335 CAACGACACTGTCACGGTG 59.076 57.895 15.69 15.69 45.33 4.94
1288 1328 2.111043 CACCCCTGCAACGACACT 59.889 61.111 0.00 0.00 0.00 3.55
1503 1547 3.666001 CGCAATCGTGGTATTGTACAAC 58.334 45.455 11.22 0.00 38.78 3.32
1722 1766 0.750182 GGGTCACGGAGGAGAGAGAG 60.750 65.000 0.00 0.00 0.00 3.20
1893 2116 3.794717 CCTAGCCTATAGATGCAGCATG 58.205 50.000 14.22 0.00 40.87 4.06
1907 2130 4.957057 GCTACCCTAGCCTAGCCT 57.043 61.111 0.00 0.00 45.95 4.58
1980 2203 0.455005 TGCATCTCTCTGACTCTGCG 59.545 55.000 0.00 0.00 32.51 5.18
2183 2762 3.535962 GGAGCAGAGAGGCCGGAG 61.536 72.222 5.05 0.00 0.00 4.63
2190 2769 3.535962 GAGGCCCGGAGCAGAGAG 61.536 72.222 0.73 0.00 46.50 3.20
2281 2860 3.637273 ACCAGACCGGCTTCCCAC 61.637 66.667 0.00 0.00 39.03 4.61
2291 2870 1.982938 ACCGAGCCTACACCAGACC 60.983 63.158 0.00 0.00 0.00 3.85
2295 2874 2.632544 CGACACCGAGCCTACACCA 61.633 63.158 0.00 0.00 38.22 4.17
2311 2911 1.135489 GGCAACATACAGACGAGACGA 60.135 52.381 0.00 0.00 0.00 4.20
2316 2916 0.389296 CACGGGCAACATACAGACGA 60.389 55.000 0.00 0.00 39.74 4.20
2317 2917 0.389296 TCACGGGCAACATACAGACG 60.389 55.000 0.00 0.00 39.74 4.18
2354 2954 0.108615 CAGACACCTACTCGCCCAAG 60.109 60.000 0.00 0.00 0.00 3.61
2359 2959 0.882474 AGTCACAGACACCTACTCGC 59.118 55.000 0.00 0.00 34.60 5.03
2367 2967 1.600663 CGTCCTCACAGTCACAGACAC 60.601 57.143 0.00 0.00 34.60 3.67
2368 2968 0.668535 CGTCCTCACAGTCACAGACA 59.331 55.000 0.00 0.00 34.60 3.41
2369 2969 0.664767 GCGTCCTCACAGTCACAGAC 60.665 60.000 0.00 0.00 0.00 3.51
2370 2970 0.823769 AGCGTCCTCACAGTCACAGA 60.824 55.000 0.00 0.00 0.00 3.41
2376 2976 2.919856 AGGCAGCGTCCTCACAGT 60.920 61.111 0.00 0.00 0.00 3.55
2494 3097 6.141560 TCTGAGAAGTAGAGTATGCATGTG 57.858 41.667 10.16 0.00 0.00 3.21
2501 3104 4.469657 CCCTGCTCTGAGAAGTAGAGTAT 58.530 47.826 11.69 0.00 42.83 2.12
2502 3105 3.892284 CCCTGCTCTGAGAAGTAGAGTA 58.108 50.000 11.69 0.00 42.83 2.59
2503 3106 2.733956 CCCTGCTCTGAGAAGTAGAGT 58.266 52.381 11.69 0.00 42.83 3.24
2505 3108 1.479709 GCCCTGCTCTGAGAAGTAGA 58.520 55.000 11.69 0.00 31.30 2.59
2506 3109 0.463620 GGCCCTGCTCTGAGAAGTAG 59.536 60.000 11.69 4.01 0.00 2.57
2507 3110 0.978146 GGGCCCTGCTCTGAGAAGTA 60.978 60.000 17.04 0.00 0.00 2.24
2509 3112 0.689080 TAGGGCCCTGCTCTGAGAAG 60.689 60.000 35.81 7.36 40.83 2.85
2510 3113 0.978146 GTAGGGCCCTGCTCTGAGAA 60.978 60.000 35.81 7.98 40.83 2.87
2511 3114 1.381872 GTAGGGCCCTGCTCTGAGA 60.382 63.158 35.81 8.87 40.83 3.27
2514 3117 1.267574 TTCAGTAGGGCCCTGCTCTG 61.268 60.000 37.11 33.23 40.83 3.35
2515 3118 0.547712 TTTCAGTAGGGCCCTGCTCT 60.548 55.000 37.11 25.88 44.12 4.09
2516 3119 0.393132 GTTTCAGTAGGGCCCTGCTC 60.393 60.000 37.11 23.06 36.89 4.26
2517 3120 0.842467 AGTTTCAGTAGGGCCCTGCT 60.842 55.000 34.75 34.75 39.55 4.24
2518 3121 0.393132 GAGTTTCAGTAGGGCCCTGC 60.393 60.000 35.81 33.41 0.00 4.85
2519 3122 1.065854 CAGAGTTTCAGTAGGGCCCTG 60.066 57.143 35.81 19.43 0.00 4.45
2520 3123 1.280457 CAGAGTTTCAGTAGGGCCCT 58.720 55.000 31.35 31.35 0.00 5.19
2521 3124 0.984995 ACAGAGTTTCAGTAGGGCCC 59.015 55.000 16.46 16.46 0.00 5.80
2522 3125 1.623811 TGACAGAGTTTCAGTAGGGCC 59.376 52.381 0.00 0.00 0.00 5.80
2523 3126 2.689646 GTGACAGAGTTTCAGTAGGGC 58.310 52.381 0.00 0.00 0.00 5.19
2528 3236 3.728076 TTAGCGTGACAGAGTTTCAGT 57.272 42.857 0.00 0.00 0.00 3.41
2550 3277 3.070446 TGTCAGTGTGATTACCCTTTCGT 59.930 43.478 0.00 0.00 0.00 3.85
2558 3285 4.216257 AGGCAAACATGTCAGTGTGATTAC 59.784 41.667 0.00 0.00 31.49 1.89
2560 3287 3.005050 CAGGCAAACATGTCAGTGTGATT 59.995 43.478 0.00 0.00 31.49 2.57
2562 3289 1.948834 CAGGCAAACATGTCAGTGTGA 59.051 47.619 0.00 0.00 31.49 3.58
2565 3292 4.669965 CGATTACAGGCAAACATGTCAGTG 60.670 45.833 0.00 0.00 0.00 3.66
2566 3293 3.436704 CGATTACAGGCAAACATGTCAGT 59.563 43.478 0.00 0.00 0.00 3.41
2578 3326 5.695818 ACAACATAAACAACGATTACAGGC 58.304 37.500 0.00 0.00 0.00 4.85
2584 3332 8.385111 CGGTCTATAACAACATAAACAACGATT 58.615 33.333 0.00 0.00 0.00 3.34
2585 3333 7.010738 CCGGTCTATAACAACATAAACAACGAT 59.989 37.037 0.00 0.00 0.00 3.73
2586 3334 6.310956 CCGGTCTATAACAACATAAACAACGA 59.689 38.462 0.00 0.00 0.00 3.85
2588 3336 6.253013 GCCGGTCTATAACAACATAAACAAC 58.747 40.000 1.90 0.00 0.00 3.32
2589 3337 5.063691 CGCCGGTCTATAACAACATAAACAA 59.936 40.000 1.90 0.00 0.00 2.83
2591 3339 4.025480 CCGCCGGTCTATAACAACATAAAC 60.025 45.833 1.90 0.00 0.00 2.01
2592 3340 4.121317 CCGCCGGTCTATAACAACATAAA 58.879 43.478 1.90 0.00 0.00 1.40
2593 3341 3.493002 CCCGCCGGTCTATAACAACATAA 60.493 47.826 1.90 0.00 0.00 1.90
2594 3342 2.036217 CCCGCCGGTCTATAACAACATA 59.964 50.000 1.90 0.00 0.00 2.29
2600 3348 2.030113 GGCCCGCCGGTCTATAAC 59.970 66.667 1.90 0.00 0.00 1.89
2914 3711 3.677527 GCAGCAAGCAGGATGTGT 58.322 55.556 0.00 0.00 44.79 3.72
3017 3815 3.438360 ACTTTCGAAGCAAGCAAAACTG 58.562 40.909 0.00 0.00 0.00 3.16
3018 3816 3.782889 ACTTTCGAAGCAAGCAAAACT 57.217 38.095 0.00 0.00 0.00 2.66
3025 3823 6.412072 CAGTGTTTTTCTACTTTCGAAGCAAG 59.588 38.462 0.00 0.00 0.00 4.01
3066 3864 5.488341 CCTCGAGGAAAAGAAATTACCTCA 58.512 41.667 28.21 0.00 44.90 3.86
3158 3977 6.376581 TCCTTTGTCTACTTGCTAGTACTACC 59.623 42.308 3.76 0.00 35.78 3.18
3162 3981 5.103687 GCTCCTTTGTCTACTTGCTAGTAC 58.896 45.833 3.76 0.00 35.78 2.73
3257 4077 2.736995 CGTGTGCCCGTGTACTGG 60.737 66.667 0.00 0.00 0.00 4.00
3303 4123 1.807755 GCAAGCATAGGATCTCACGCA 60.808 52.381 0.00 0.00 0.00 5.24
3305 4125 2.522836 AGCAAGCATAGGATCTCACG 57.477 50.000 0.00 0.00 0.00 4.35
3359 4283 0.179048 CATCATAGCGTGGGCCTTCA 60.179 55.000 4.53 0.00 41.24 3.02
3370 4294 9.624697 TTTGTTTCTATTTTGTGTCATCATAGC 57.375 29.630 0.00 0.00 0.00 2.97
3514 4438 1.334869 GCCAGTGGACTTTGTCAGTTG 59.665 52.381 15.20 0.00 35.01 3.16
3532 4456 2.973694 AATGATGGAATGCAAGTGCC 57.026 45.000 0.00 0.00 41.18 5.01
3543 4467 3.446799 GCAAGCGCAAATTAATGATGGA 58.553 40.909 11.47 0.00 38.36 3.41
3545 4469 2.853594 ACGCAAGCGCAAATTAATGATG 59.146 40.909 15.09 0.00 44.19 3.07
3549 4473 1.984990 CACACGCAAGCGCAAATTAAT 59.015 42.857 15.09 0.00 44.19 1.40
3551 4475 1.001240 GCACACGCAAGCGCAAATTA 61.001 50.000 15.09 0.00 44.19 1.40
3559 4483 2.743928 AGGCTAGCACACGCAAGC 60.744 61.111 18.24 0.00 42.27 4.01
3625 4549 6.620678 TGCAGGATGAATTACTTTTAGCAAC 58.379 36.000 0.00 0.00 39.69 4.17
3650 4574 6.206634 TCTCTGTCAAAACAAAACTTCTGTGT 59.793 34.615 0.00 0.00 34.24 3.72
3692 4616 2.945008 TCAAACAGCAGTTCAAGACCAG 59.055 45.455 0.00 0.00 36.84 4.00
3693 4617 2.997980 TCAAACAGCAGTTCAAGACCA 58.002 42.857 0.00 0.00 36.84 4.02
3729 4653 8.834695 CGAAACAGATTCAAATTTTGATTTCG 57.165 30.769 26.40 26.40 43.94 3.46
3731 4655 8.063630 GCACGAAACAGATTCAAATTTTGATTT 58.936 29.630 12.39 9.42 39.84 2.17
3760 5269 1.286880 GCACCTGTGGACACAATGC 59.713 57.895 19.31 19.31 42.45 3.56
4210 5737 0.660488 CAAGCCTAAACACACACGCA 59.340 50.000 0.00 0.00 0.00 5.24
4212 5739 0.591170 CCCAAGCCTAAACACACACG 59.409 55.000 0.00 0.00 0.00 4.49
4232 5759 0.323999 TTCACCAGCCTAGCTACGGA 60.324 55.000 11.96 0.00 36.40 4.69
4244 5771 4.696877 TCTGCATCACAAGTAATTCACCAG 59.303 41.667 0.00 0.00 0.00 4.00
4253 5780 3.528532 CATCTGCTCTGCATCACAAGTA 58.471 45.455 0.00 0.00 38.13 2.24
4254 5781 2.357075 CATCTGCTCTGCATCACAAGT 58.643 47.619 0.00 0.00 38.13 3.16
4255 5782 1.064208 GCATCTGCTCTGCATCACAAG 59.936 52.381 0.00 0.00 38.13 3.16
4256 5783 1.092348 GCATCTGCTCTGCATCACAA 58.908 50.000 0.00 0.00 38.13 3.33
4267 5816 1.342174 CAAAAACACCCTGCATCTGCT 59.658 47.619 3.53 0.00 42.66 4.24
4289 5838 1.201578 CACTAACGCGCACACACAG 59.798 57.895 5.73 0.00 0.00 3.66
4298 5847 1.113253 CGTATGAGCTCACTAACGCG 58.887 55.000 25.67 17.17 0.00 6.01
4370 5924 3.064820 CCATTTCCGTTAAGACCCATTCG 59.935 47.826 0.00 0.00 0.00 3.34
4390 5944 7.446106 AATTACCATGTGACTACTAATCCCA 57.554 36.000 0.00 0.00 0.00 4.37
4391 5945 8.426489 TGTAATTACCATGTGACTACTAATCCC 58.574 37.037 13.01 0.00 0.00 3.85
4394 5948 9.817809 CAGTGTAATTACCATGTGACTACTAAT 57.182 33.333 13.01 0.00 0.00 1.73
4395 5949 9.027202 TCAGTGTAATTACCATGTGACTACTAA 57.973 33.333 13.01 0.00 0.00 2.24
4397 5951 7.476540 TCAGTGTAATTACCATGTGACTACT 57.523 36.000 13.01 3.74 0.00 2.57
4398 5952 8.440833 GTTTCAGTGTAATTACCATGTGACTAC 58.559 37.037 13.01 1.50 0.00 2.73
4417 5971 3.382546 AGAGTGCTTGCATTTGTTTCAGT 59.617 39.130 0.00 0.00 0.00 3.41
4468 6022 0.471591 AAAGGCAGCCATGTTGGGAA 60.472 50.000 15.80 0.00 38.19 3.97
4471 6025 1.294138 CCAAAGGCAGCCATGTTGG 59.706 57.895 21.12 21.12 41.55 3.77
4483 6037 0.821711 TGAACCTGGAACGCCAAAGG 60.822 55.000 0.00 0.00 45.41 3.11
4507 6061 2.432510 AGAAGGAGTATCTTCCAAGCGG 59.567 50.000 0.00 0.00 42.94 5.52
4517 6071 6.807789 AGTATTTCCGAACAGAAGGAGTATC 58.192 40.000 0.00 0.00 37.88 2.24
4521 6075 5.238583 ACAAGTATTTCCGAACAGAAGGAG 58.761 41.667 0.00 0.00 37.88 3.69
4522 6076 5.011738 AGACAAGTATTTCCGAACAGAAGGA 59.988 40.000 0.00 0.00 34.19 3.36
4524 6078 6.787085 AAGACAAGTATTTCCGAACAGAAG 57.213 37.500 0.00 0.00 0.00 2.85
4525 6079 8.665643 TTTAAGACAAGTATTTCCGAACAGAA 57.334 30.769 0.00 0.00 0.00 3.02
4527 6081 9.893305 ATTTTTAAGACAAGTATTTCCGAACAG 57.107 29.630 0.00 0.00 0.00 3.16
4528 6082 9.672086 CATTTTTAAGACAAGTATTTCCGAACA 57.328 29.630 0.00 0.00 0.00 3.18
4529 6083 9.124807 CCATTTTTAAGACAAGTATTTCCGAAC 57.875 33.333 0.00 0.00 0.00 3.95
4531 6085 8.398878 ACCATTTTTAAGACAAGTATTTCCGA 57.601 30.769 0.00 0.00 0.00 4.55
4532 6086 8.911662 CAACCATTTTTAAGACAAGTATTTCCG 58.088 33.333 0.00 0.00 0.00 4.30
4533 6087 9.758651 ACAACCATTTTTAAGACAAGTATTTCC 57.241 29.630 0.00 0.00 0.00 3.13
4553 6107 9.485206 GAACTAAAACAAGTCTAGATACAACCA 57.515 33.333 0.00 0.00 0.00 3.67
4554 6108 9.708092 AGAACTAAAACAAGTCTAGATACAACC 57.292 33.333 0.00 0.00 0.00 3.77
4564 6118 9.708092 GGTTGTATCTAGAACTAAAACAAGTCT 57.292 33.333 0.00 0.00 30.96 3.24
4576 6130 9.871238 TGTCTTAGAAATGGTTGTATCTAGAAC 57.129 33.333 0.00 0.00 0.00 3.01
4581 6135 9.965902 ATTCTTGTCTTAGAAATGGTTGTATCT 57.034 29.630 0.00 0.00 37.66 1.98
4587 6141 7.447238 TCGGAAATTCTTGTCTTAGAAATGGTT 59.553 33.333 0.00 0.00 37.66 3.67
4588 6142 6.940298 TCGGAAATTCTTGTCTTAGAAATGGT 59.060 34.615 0.00 0.00 37.66 3.55
4589 6143 7.377766 TCGGAAATTCTTGTCTTAGAAATGG 57.622 36.000 0.00 0.00 37.66 3.16
4590 6144 7.478667 CGTTCGGAAATTCTTGTCTTAGAAATG 59.521 37.037 0.00 0.00 37.66 2.32
4591 6145 7.360946 CCGTTCGGAAATTCTTGTCTTAGAAAT 60.361 37.037 5.19 0.00 37.66 2.17
4592 6146 6.073440 CCGTTCGGAAATTCTTGTCTTAGAAA 60.073 38.462 5.19 0.00 37.66 2.52
4593 6147 5.407387 CCGTTCGGAAATTCTTGTCTTAGAA 59.593 40.000 5.19 0.00 38.43 2.10
4594 6148 4.927425 CCGTTCGGAAATTCTTGTCTTAGA 59.073 41.667 5.19 0.00 0.00 2.10
4596 6150 4.885413 TCCGTTCGGAAATTCTTGTCTTA 58.115 39.130 11.66 0.00 0.00 2.10
4597 6151 3.735591 TCCGTTCGGAAATTCTTGTCTT 58.264 40.909 11.66 0.00 0.00 3.01
4598 6152 3.326747 CTCCGTTCGGAAATTCTTGTCT 58.673 45.455 14.79 0.00 33.41 3.41
4599 6153 2.415512 CCTCCGTTCGGAAATTCTTGTC 59.584 50.000 14.79 0.00 33.41 3.18
4600 6154 2.423577 CCTCCGTTCGGAAATTCTTGT 58.576 47.619 14.79 0.00 33.41 3.16
4601 6155 1.737793 CCCTCCGTTCGGAAATTCTTG 59.262 52.381 14.79 1.97 33.41 3.02
4602 6156 1.626825 TCCCTCCGTTCGGAAATTCTT 59.373 47.619 14.79 0.00 33.41 2.52
4604 6158 1.066358 ACTCCCTCCGTTCGGAAATTC 60.066 52.381 14.79 0.00 33.41 2.17
4605 6159 0.981943 ACTCCCTCCGTTCGGAAATT 59.018 50.000 14.79 0.00 33.41 1.82
4606 6160 1.479730 GTACTCCCTCCGTTCGGAAAT 59.520 52.381 14.79 2.39 33.41 2.17
4607 6161 0.890683 GTACTCCCTCCGTTCGGAAA 59.109 55.000 14.79 3.49 33.41 3.13
4609 6163 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
4610 6164 1.978454 ATAGTACTCCCTCCGTTCGG 58.022 55.000 0.00 4.74 0.00 4.30
4611 6165 3.470709 TGTATAGTACTCCCTCCGTTCG 58.529 50.000 0.00 0.00 0.00 3.95
4612 6166 5.735638 GCTTTGTATAGTACTCCCTCCGTTC 60.736 48.000 0.00 0.00 0.00 3.95
4613 6167 4.099113 GCTTTGTATAGTACTCCCTCCGTT 59.901 45.833 0.00 0.00 0.00 4.44
4615 6169 3.304525 CGCTTTGTATAGTACTCCCTCCG 60.305 52.174 0.00 0.00 0.00 4.63
4616 6170 3.005578 CCGCTTTGTATAGTACTCCCTCC 59.994 52.174 0.00 0.00 0.00 4.30
4617 6171 3.635836 ACCGCTTTGTATAGTACTCCCTC 59.364 47.826 0.00 0.00 0.00 4.30
4621 6175 8.546244 GGAAAATAACCGCTTTGTATAGTACTC 58.454 37.037 0.00 0.00 0.00 2.59
4622 6176 7.496920 GGGAAAATAACCGCTTTGTATAGTACT 59.503 37.037 0.00 0.00 0.00 2.73
4623 6177 7.280652 TGGGAAAATAACCGCTTTGTATAGTAC 59.719 37.037 0.00 0.00 0.00 2.73
4624 6178 7.337167 TGGGAAAATAACCGCTTTGTATAGTA 58.663 34.615 0.00 0.00 0.00 1.82
4625 6179 6.181908 TGGGAAAATAACCGCTTTGTATAGT 58.818 36.000 0.00 0.00 0.00 2.12
4626 6180 6.687081 TGGGAAAATAACCGCTTTGTATAG 57.313 37.500 0.00 0.00 0.00 1.31
4627 6181 6.829298 TCATGGGAAAATAACCGCTTTGTATA 59.171 34.615 0.00 0.00 0.00 1.47
4628 6182 5.654650 TCATGGGAAAATAACCGCTTTGTAT 59.345 36.000 0.00 0.00 0.00 2.29
4629 6183 5.010933 TCATGGGAAAATAACCGCTTTGTA 58.989 37.500 0.00 0.00 0.00 2.41
4630 6184 3.829601 TCATGGGAAAATAACCGCTTTGT 59.170 39.130 0.00 0.00 0.00 2.83
4631 6185 4.448537 TCATGGGAAAATAACCGCTTTG 57.551 40.909 0.00 0.00 0.00 2.77
4632 6186 5.422012 AGATTCATGGGAAAATAACCGCTTT 59.578 36.000 0.00 0.00 36.43 3.51
4633 6187 4.956075 AGATTCATGGGAAAATAACCGCTT 59.044 37.500 0.00 0.00 36.43 4.68
4634 6188 4.536765 AGATTCATGGGAAAATAACCGCT 58.463 39.130 0.00 0.00 36.43 5.52
4635 6189 4.918810 AGATTCATGGGAAAATAACCGC 57.081 40.909 0.00 0.00 36.43 5.68
4637 6191 6.693315 TCGAAGATTCATGGGAAAATAACC 57.307 37.500 0.00 0.00 36.43 2.85
4638 6192 9.237846 GAATTCGAAGATTCATGGGAAAATAAC 57.762 33.333 3.35 0.00 36.43 1.89
4639 6193 8.965819 TGAATTCGAAGATTCATGGGAAAATAA 58.034 29.630 9.57 0.00 36.43 1.40
4640 6194 8.518430 TGAATTCGAAGATTCATGGGAAAATA 57.482 30.769 9.57 0.00 36.43 1.40
4641 6195 7.408756 TGAATTCGAAGATTCATGGGAAAAT 57.591 32.000 9.57 0.00 36.43 1.82
4659 6419 6.070824 AGTGGGTGGTTATTGGAATTGAATTC 60.071 38.462 9.36 9.36 38.55 2.17
4679 6439 1.610522 CAAAGAGGCAAACAGAGTGGG 59.389 52.381 0.00 0.00 0.00 4.61
4764 6524 8.737168 TGTCATAGTAGCTTTCTTTGCATATT 57.263 30.769 0.00 0.00 0.00 1.28
4773 6533 7.282224 TGTTGTTGTTTGTCATAGTAGCTTTCT 59.718 33.333 0.00 0.00 0.00 2.52
4774 6534 7.414436 TGTTGTTGTTTGTCATAGTAGCTTTC 58.586 34.615 0.00 0.00 0.00 2.62
4776 6536 6.935741 TGTTGTTGTTTGTCATAGTAGCTT 57.064 33.333 0.00 0.00 0.00 3.74
4777 6537 6.486657 ACATGTTGTTGTTTGTCATAGTAGCT 59.513 34.615 0.00 0.00 0.00 3.32
4778 6538 6.668323 ACATGTTGTTGTTTGTCATAGTAGC 58.332 36.000 0.00 0.00 0.00 3.58
4779 6539 9.203421 TCTACATGTTGTTGTTTGTCATAGTAG 57.797 33.333 2.30 0.00 0.00 2.57
4780 6540 8.984764 GTCTACATGTTGTTGTTTGTCATAGTA 58.015 33.333 2.30 0.00 0.00 1.82
4781 6541 7.497579 TGTCTACATGTTGTTGTTTGTCATAGT 59.502 33.333 2.30 0.00 0.00 2.12
4782 6542 7.798516 GTGTCTACATGTTGTTGTTTGTCATAG 59.201 37.037 2.30 0.00 0.00 2.23
4783 6543 7.281100 TGTGTCTACATGTTGTTGTTTGTCATA 59.719 33.333 2.30 0.00 0.00 2.15
4784 6544 6.094742 TGTGTCTACATGTTGTTGTTTGTCAT 59.905 34.615 2.30 0.00 0.00 3.06
4785 6545 5.412904 TGTGTCTACATGTTGTTGTTTGTCA 59.587 36.000 2.30 0.00 0.00 3.58
4786 6546 5.737290 GTGTGTCTACATGTTGTTGTTTGTC 59.263 40.000 2.30 0.00 39.39 3.18
4787 6547 5.182190 TGTGTGTCTACATGTTGTTGTTTGT 59.818 36.000 2.30 0.00 39.39 2.83
4789 6549 5.888691 TGTGTGTCTACATGTTGTTGTTT 57.111 34.783 2.30 0.00 39.39 2.83
4790 6550 6.094742 TGAATGTGTGTCTACATGTTGTTGTT 59.905 34.615 2.30 0.00 40.24 2.83
4791 6551 5.588246 TGAATGTGTGTCTACATGTTGTTGT 59.412 36.000 2.30 0.00 40.24 3.32
4792 6552 6.058827 TGAATGTGTGTCTACATGTTGTTG 57.941 37.500 2.30 0.00 40.24 3.33
4812 6576 4.580167 CACATTGTCTGAAGAACCCTTGAA 59.420 41.667 0.00 0.00 31.62 2.69
4900 6664 1.909302 AGCAACTACTGTAGCCACCAT 59.091 47.619 14.55 0.00 0.00 3.55
4961 6728 5.273674 TCTCATCTCCAACTGATGTGATC 57.726 43.478 0.00 0.00 41.30 2.92
4990 6757 7.613585 TGATTTATTACAAGTCGTTGGGAGTA 58.386 34.615 0.00 0.00 38.07 2.59
4997 6764 5.636121 TGTCGCTGATTTATTACAAGTCGTT 59.364 36.000 0.00 0.00 0.00 3.85
4998 6765 5.165676 TGTCGCTGATTTATTACAAGTCGT 58.834 37.500 0.00 0.00 0.00 4.34
5008 6775 7.624360 TCCATTTTAACTGTCGCTGATTTAT 57.376 32.000 0.00 0.00 0.00 1.40
5022 6789 4.152284 ACTCCCTCCGATCCATTTTAAC 57.848 45.455 0.00 0.00 0.00 2.01
5078 6846 6.835174 AGTACTCATCAGCCATCACATATTT 58.165 36.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.