Multiple sequence alignment - TraesCS2A01G502000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G502000 chr2A 100.000 3465 0 0 1 3465 729872277 729868813 0.000000e+00 6399.0
1 TraesCS2A01G502000 chr2A 79.682 1196 163 47 1033 2188 718264967 718266122 0.000000e+00 789.0
2 TraesCS2A01G502000 chr2A 93.750 48 3 0 518 565 369834149 369834196 4.800000e-09 73.1
3 TraesCS2A01G502000 chr2D 96.431 1457 33 5 785 2222 596213284 596211828 0.000000e+00 2385.0
4 TraesCS2A01G502000 chr2D 80.711 1182 171 36 1033 2188 580455758 580456908 0.000000e+00 867.0
5 TraesCS2A01G502000 chr2D 86.983 484 43 7 2231 2696 596211644 596211163 8.520000e-146 527.0
6 TraesCS2A01G502000 chr2D 90.400 375 30 2 13 381 378544858 378544484 4.020000e-134 488.0
7 TraesCS2A01G502000 chr2D 86.945 383 35 6 5 381 42871122 42870749 1.920000e-112 416.0
8 TraesCS2A01G502000 chr2D 94.375 160 8 1 2691 2850 596211037 596210879 9.610000e-61 244.0
9 TraesCS2A01G502000 chr2D 96.629 89 2 1 665 752 596213363 596213275 2.790000e-31 147.0
10 TraesCS2A01G502000 chr2B 95.319 1410 59 2 782 2184 724935819 724934410 0.000000e+00 2231.0
11 TraesCS2A01G502000 chr2B 80.051 1183 178 39 1032 2188 701359344 701360494 0.000000e+00 824.0
12 TraesCS2A01G502000 chr2B 91.026 78 5 2 676 753 724935889 724935814 1.700000e-18 104.0
13 TraesCS2A01G502000 chr7A 97.231 614 17 0 2852 3465 308702166 308701553 0.000000e+00 1040.0
14 TraesCS2A01G502000 chr7A 97.231 614 17 0 2852 3465 308709796 308709183 0.000000e+00 1040.0
15 TraesCS2A01G502000 chr7A 86.076 632 65 10 2852 3465 536060236 536060862 0.000000e+00 658.0
16 TraesCS2A01G502000 chr7A 96.000 50 2 0 518 567 19185312 19185361 7.970000e-12 82.4
17 TraesCS2A01G502000 chr7A 86.567 67 7 2 1258 1323 625642246 625642181 4.800000e-09 73.1
18 TraesCS2A01G502000 chr7A 93.478 46 3 0 520 565 68887620 68887575 6.210000e-08 69.4
19 TraesCS2A01G502000 chr7A 95.349 43 2 0 523 565 115795259 115795301 6.210000e-08 69.4
20 TraesCS2A01G502000 chr5A 97.068 614 18 0 2852 3465 206672566 206671953 0.000000e+00 1035.0
21 TraesCS2A01G502000 chr5A 71.882 946 206 39 1241 2159 355854769 355855681 5.820000e-53 219.0
22 TraesCS2A01G502000 chr6A 92.282 609 43 4 2852 3458 302595884 302595278 0.000000e+00 861.0
23 TraesCS2A01G502000 chr6A 86.688 631 59 14 2852 3465 595442671 595442049 0.000000e+00 676.0
24 TraesCS2A01G502000 chr4A 91.896 617 44 6 2852 3465 130363201 130362588 0.000000e+00 857.0
25 TraesCS2A01G502000 chr4A 91.410 617 48 5 2852 3465 130371239 130370625 0.000000e+00 841.0
26 TraesCS2A01G502000 chr3A 86.284 627 66 11 2852 3463 115113155 115113776 0.000000e+00 664.0
27 TraesCS2A01G502000 chr3A 95.745 47 2 0 520 566 26567111 26567065 3.710000e-10 76.8
28 TraesCS2A01G502000 chr7D 92.632 380 27 1 1 380 593404513 593404891 2.350000e-151 545.0
29 TraesCS2A01G502000 chr7D 93.478 46 3 0 520 565 80452367 80452322 6.210000e-08 69.4
30 TraesCS2A01G502000 chr7D 97.222 36 1 0 1277 1312 548324766 548324731 1.040000e-05 62.1
31 TraesCS2A01G502000 chr7D 96.875 32 1 0 535 566 629106252 629106283 2.000000e-03 54.7
32 TraesCS2A01G502000 chr3D 90.741 378 26 4 9 380 544417161 544417535 2.400000e-136 496.0
33 TraesCS2A01G502000 chr3D 89.664 387 26 8 1 381 110277960 110278338 6.730000e-132 481.0
34 TraesCS2A01G502000 chr3D 100.000 29 0 0 534 562 184122195 184122223 2.000000e-03 54.7
35 TraesCS2A01G502000 chr5B 87.080 387 37 7 1 381 41252007 41252386 3.200000e-115 425.0
36 TraesCS2A01G502000 chr5B 86.807 379 39 8 6 380 685201571 685201200 2.490000e-111 412.0
37 TraesCS2A01G502000 chr5B 89.583 48 5 0 518 565 357102117 357102164 1.040000e-05 62.1
38 TraesCS2A01G502000 chr5B 89.583 48 5 0 518 565 499308867 499308914 1.040000e-05 62.1
39 TraesCS2A01G502000 chr1B 74.135 1156 214 45 1065 2162 445183693 445182565 1.940000e-107 399.0
40 TraesCS2A01G502000 chr1B 93.750 48 3 0 518 565 612866209 612866162 4.800000e-09 73.1
41 TraesCS2A01G502000 chr1B 93.478 46 2 1 520 565 305544117 305544073 2.230000e-07 67.6
42 TraesCS2A01G502000 chr1B 97.059 34 1 0 534 567 509056409 509056442 1.340000e-04 58.4
43 TraesCS2A01G502000 chr6B 85.309 388 43 8 1 381 30575493 30575873 4.190000e-104 388.0
44 TraesCS2A01G502000 chr6B 86.364 66 9 0 1258 1323 694681041 694680976 4.800000e-09 73.1
45 TraesCS2A01G502000 chr6B 95.455 44 2 0 522 565 459373655 459373612 1.730000e-08 71.3
46 TraesCS2A01G502000 chr7B 84.794 388 47 7 1 381 744046713 744046331 2.520000e-101 379.0
47 TraesCS2A01G502000 chr7B 92.308 52 2 2 1279 1329 591565917 591565867 4.800000e-09 73.1
48 TraesCS2A01G502000 chr7B 97.143 35 1 0 1278 1312 591057023 591057057 3.730000e-05 60.2
49 TraesCS2A01G502000 chr1A 73.265 1167 211 56 1065 2162 427504953 427503819 1.990000e-87 333.0
50 TraesCS2A01G502000 chr5D 72.287 949 197 45 1241 2159 268486019 268486931 5.780000e-58 235.0
51 TraesCS2A01G502000 chr4D 93.878 49 3 0 518 566 29863883 29863931 1.330000e-09 75.0
52 TraesCS2A01G502000 chr4B 93.878 49 3 0 518 566 107776920 107776872 1.330000e-09 75.0
53 TraesCS2A01G502000 chr4B 91.111 45 4 0 521 565 205300362 205300318 1.040000e-05 62.1
54 TraesCS2A01G502000 chr4B 91.111 45 4 0 524 568 517754619 517754575 1.040000e-05 62.1
55 TraesCS2A01G502000 chrUn 92.308 52 2 2 1279 1329 355335501 355335551 4.800000e-09 73.1
56 TraesCS2A01G502000 chr1D 86.364 66 9 0 1258 1323 110905245 110905180 4.800000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G502000 chr2A 729868813 729872277 3464 True 6399.00 6399 100.0000 1 3465 1 chr2A.!!$R1 3464
1 TraesCS2A01G502000 chr2A 718264967 718266122 1155 False 789.00 789 79.6820 1033 2188 1 chr2A.!!$F2 1155
2 TraesCS2A01G502000 chr2D 580455758 580456908 1150 False 867.00 867 80.7110 1033 2188 1 chr2D.!!$F1 1155
3 TraesCS2A01G502000 chr2D 596210879 596213363 2484 True 825.75 2385 93.6045 665 2850 4 chr2D.!!$R3 2185
4 TraesCS2A01G502000 chr2B 724934410 724935889 1479 True 1167.50 2231 93.1725 676 2184 2 chr2B.!!$R1 1508
5 TraesCS2A01G502000 chr2B 701359344 701360494 1150 False 824.00 824 80.0510 1032 2188 1 chr2B.!!$F1 1156
6 TraesCS2A01G502000 chr7A 308701553 308702166 613 True 1040.00 1040 97.2310 2852 3465 1 chr7A.!!$R2 613
7 TraesCS2A01G502000 chr7A 308709183 308709796 613 True 1040.00 1040 97.2310 2852 3465 1 chr7A.!!$R3 613
8 TraesCS2A01G502000 chr7A 536060236 536060862 626 False 658.00 658 86.0760 2852 3465 1 chr7A.!!$F3 613
9 TraesCS2A01G502000 chr5A 206671953 206672566 613 True 1035.00 1035 97.0680 2852 3465 1 chr5A.!!$R1 613
10 TraesCS2A01G502000 chr5A 355854769 355855681 912 False 219.00 219 71.8820 1241 2159 1 chr5A.!!$F1 918
11 TraesCS2A01G502000 chr6A 302595278 302595884 606 True 861.00 861 92.2820 2852 3458 1 chr6A.!!$R1 606
12 TraesCS2A01G502000 chr6A 595442049 595442671 622 True 676.00 676 86.6880 2852 3465 1 chr6A.!!$R2 613
13 TraesCS2A01G502000 chr4A 130362588 130363201 613 True 857.00 857 91.8960 2852 3465 1 chr4A.!!$R1 613
14 TraesCS2A01G502000 chr4A 130370625 130371239 614 True 841.00 841 91.4100 2852 3465 1 chr4A.!!$R2 613
15 TraesCS2A01G502000 chr3A 115113155 115113776 621 False 664.00 664 86.2840 2852 3463 1 chr3A.!!$F1 611
16 TraesCS2A01G502000 chr1B 445182565 445183693 1128 True 399.00 399 74.1350 1065 2162 1 chr1B.!!$R2 1097
17 TraesCS2A01G502000 chr1A 427503819 427504953 1134 True 333.00 333 73.2650 1065 2162 1 chr1A.!!$R1 1097
18 TraesCS2A01G502000 chr5D 268486019 268486931 912 False 235.00 235 72.2870 1241 2159 1 chr5D.!!$F1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.242825 TTTAGACACGTCTGGAGGCG 59.757 55.0 9.98 0.0 40.71 5.52 F
777 786 0.333312 TCTCCTCGAGCCTTCCTTCT 59.667 55.0 6.99 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 2568 0.585357 GAGTCGTCATGGATGCATGC 59.415 55.0 21.37 11.82 32.87 4.06 R
2590 2934 0.625849 ACTTGAATTCGGATGGCCCT 59.374 50.0 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.082523 CCGTCACCAGTCCGCCAT 62.083 66.667 0.00 0.00 0.00 4.40
26 27 2.815211 CGTCACCAGTCCGCCATG 60.815 66.667 0.00 0.00 0.00 3.66
27 28 2.436646 GTCACCAGTCCGCCATGG 60.437 66.667 7.63 7.63 42.60 3.66
28 29 4.408821 TCACCAGTCCGCCATGGC 62.409 66.667 27.67 27.67 40.45 4.40
29 30 4.720902 CACCAGTCCGCCATGGCA 62.721 66.667 34.93 15.49 40.45 4.92
30 31 3.965258 ACCAGTCCGCCATGGCAA 61.965 61.111 34.93 20.46 40.45 4.52
31 32 3.443045 CCAGTCCGCCATGGCAAC 61.443 66.667 34.93 29.39 42.06 4.17
32 33 3.803082 CAGTCCGCCATGGCAACG 61.803 66.667 34.93 21.48 42.06 4.10
55 56 4.351054 CAGGGGTGCACCAGGGAC 62.351 72.222 35.78 18.63 42.91 4.46
73 74 4.821589 GGCCGCGTCAAGGAGGAG 62.822 72.222 4.92 0.00 0.00 3.69
74 75 3.760035 GCCGCGTCAAGGAGGAGA 61.760 66.667 4.92 0.00 0.00 3.71
75 76 2.970639 CCGCGTCAAGGAGGAGAA 59.029 61.111 4.92 0.00 0.00 2.87
76 77 1.153745 CCGCGTCAAGGAGGAGAAG 60.154 63.158 4.92 0.00 0.00 2.85
77 78 1.595993 CCGCGTCAAGGAGGAGAAGA 61.596 60.000 4.92 0.00 0.00 2.87
78 79 0.243907 CGCGTCAAGGAGGAGAAGAA 59.756 55.000 0.00 0.00 0.00 2.52
79 80 1.715993 GCGTCAAGGAGGAGAAGAAC 58.284 55.000 0.00 0.00 0.00 3.01
80 81 1.983972 CGTCAAGGAGGAGAAGAACG 58.016 55.000 0.00 0.00 0.00 3.95
81 82 1.540267 CGTCAAGGAGGAGAAGAACGA 59.460 52.381 0.00 0.00 0.00 3.85
82 83 2.668834 CGTCAAGGAGGAGAAGAACGAC 60.669 54.545 0.00 0.00 0.00 4.34
83 84 1.540267 TCAAGGAGGAGAAGAACGACG 59.460 52.381 0.00 0.00 0.00 5.12
84 85 1.540267 CAAGGAGGAGAAGAACGACGA 59.460 52.381 0.00 0.00 0.00 4.20
85 86 2.131776 AGGAGGAGAAGAACGACGAT 57.868 50.000 0.00 0.00 0.00 3.73
86 87 1.746220 AGGAGGAGAAGAACGACGATG 59.254 52.381 0.00 0.00 0.00 3.84
87 88 1.743958 GGAGGAGAAGAACGACGATGA 59.256 52.381 0.00 0.00 0.00 2.92
88 89 2.478200 GGAGGAGAAGAACGACGATGAC 60.478 54.545 0.00 0.00 0.00 3.06
89 90 1.130749 AGGAGAAGAACGACGATGACG 59.869 52.381 0.00 0.00 45.75 4.35
90 91 1.536149 GAGAAGAACGACGATGACGG 58.464 55.000 0.00 0.00 44.46 4.79
91 92 0.456312 AGAAGAACGACGATGACGGC 60.456 55.000 0.00 0.00 45.02 5.68
110 111 4.157958 GCGACGACGGCGACTACT 62.158 66.667 30.26 0.00 41.64 2.57
111 112 2.021106 CGACGACGGCGACTACTC 59.979 66.667 22.49 1.83 41.64 2.59
112 113 2.402787 GACGACGGCGACTACTCC 59.597 66.667 22.49 0.00 41.64 3.85
114 115 4.883300 CGACGGCGACTACTCCGC 62.883 72.222 16.62 0.00 46.67 5.54
119 120 2.177531 GCGACTACTCCGCGTTCA 59.822 61.111 4.92 0.00 43.28 3.18
120 121 1.868251 GCGACTACTCCGCGTTCAG 60.868 63.158 4.92 0.00 43.28 3.02
121 122 1.868251 CGACTACTCCGCGTTCAGC 60.868 63.158 4.92 0.00 43.95 4.26
137 138 5.806286 CGTTCAGCAAGTTCTTTTTGTAGA 58.194 37.500 0.00 0.00 0.00 2.59
138 139 6.430451 CGTTCAGCAAGTTCTTTTTGTAGAT 58.570 36.000 0.00 0.00 0.00 1.98
139 140 7.572759 CGTTCAGCAAGTTCTTTTTGTAGATA 58.427 34.615 0.00 0.00 0.00 1.98
140 141 8.230486 CGTTCAGCAAGTTCTTTTTGTAGATAT 58.770 33.333 0.00 0.00 0.00 1.63
163 164 2.673074 GCTATGTAAGCCGCGAACA 58.327 52.632 8.23 6.86 46.25 3.18
164 165 1.217882 GCTATGTAAGCCGCGAACAT 58.782 50.000 8.23 14.00 46.25 2.71
165 166 2.400399 GCTATGTAAGCCGCGAACATA 58.600 47.619 8.23 14.38 46.25 2.29
166 167 2.993899 GCTATGTAAGCCGCGAACATAT 59.006 45.455 8.23 0.00 46.25 1.78
167 168 3.060895 GCTATGTAAGCCGCGAACATATC 59.939 47.826 8.23 8.12 46.25 1.63
168 169 2.882927 TGTAAGCCGCGAACATATCT 57.117 45.000 8.23 0.00 0.00 1.98
169 170 3.994204 TGTAAGCCGCGAACATATCTA 57.006 42.857 8.23 0.00 0.00 1.98
170 171 4.310357 TGTAAGCCGCGAACATATCTAA 57.690 40.909 8.23 0.00 0.00 2.10
171 172 4.878439 TGTAAGCCGCGAACATATCTAAT 58.122 39.130 8.23 0.00 0.00 1.73
172 173 6.016213 TGTAAGCCGCGAACATATCTAATA 57.984 37.500 8.23 0.00 0.00 0.98
173 174 6.627243 TGTAAGCCGCGAACATATCTAATAT 58.373 36.000 8.23 0.00 0.00 1.28
174 175 7.764331 TGTAAGCCGCGAACATATCTAATATA 58.236 34.615 8.23 0.00 0.00 0.86
175 176 8.410912 TGTAAGCCGCGAACATATCTAATATAT 58.589 33.333 8.23 0.00 0.00 0.86
176 177 7.700322 AAGCCGCGAACATATCTAATATATG 57.300 36.000 8.23 3.95 37.84 1.78
177 178 5.692204 AGCCGCGAACATATCTAATATATGC 59.308 40.000 8.23 0.00 35.88 3.14
178 179 5.107453 GCCGCGAACATATCTAATATATGCC 60.107 44.000 8.23 0.00 35.88 4.40
179 180 5.983118 CCGCGAACATATCTAATATATGCCA 59.017 40.000 8.23 0.00 35.88 4.92
180 181 6.478673 CCGCGAACATATCTAATATATGCCAA 59.521 38.462 8.23 0.00 35.88 4.52
181 182 7.011016 CCGCGAACATATCTAATATATGCCAAA 59.989 37.037 8.23 0.00 35.88 3.28
182 183 8.058328 CGCGAACATATCTAATATATGCCAAAG 58.942 37.037 0.00 0.00 35.88 2.77
183 184 8.883731 GCGAACATATCTAATATATGCCAAAGT 58.116 33.333 5.18 0.00 35.88 2.66
188 189 9.793252 CATATCTAATATATGCCAAAGTTTGCC 57.207 33.333 10.25 0.00 0.00 4.52
189 190 6.312399 TCTAATATATGCCAAAGTTTGCCG 57.688 37.500 10.25 0.00 0.00 5.69
190 191 6.058833 TCTAATATATGCCAAAGTTTGCCGA 58.941 36.000 10.25 0.00 0.00 5.54
191 192 5.590530 AATATATGCCAAAGTTTGCCGAA 57.409 34.783 10.25 0.00 0.00 4.30
192 193 3.951775 ATATGCCAAAGTTTGCCGAAA 57.048 38.095 10.25 0.00 0.00 3.46
193 194 2.837532 ATGCCAAAGTTTGCCGAAAT 57.162 40.000 10.25 0.00 0.00 2.17
194 195 2.611225 TGCCAAAGTTTGCCGAAATT 57.389 40.000 10.25 0.00 0.00 1.82
195 196 2.911484 TGCCAAAGTTTGCCGAAATTT 58.089 38.095 10.25 0.00 36.07 1.82
196 197 4.060038 TGCCAAAGTTTGCCGAAATTTA 57.940 36.364 10.25 0.00 34.10 1.40
197 198 4.054671 TGCCAAAGTTTGCCGAAATTTAG 58.945 39.130 10.25 0.00 34.10 1.85
198 199 4.202161 TGCCAAAGTTTGCCGAAATTTAGA 60.202 37.500 10.25 0.00 34.10 2.10
199 200 4.149922 GCCAAAGTTTGCCGAAATTTAGAC 59.850 41.667 10.25 0.00 34.10 2.59
200 201 4.381566 CCAAAGTTTGCCGAAATTTAGACG 59.618 41.667 10.25 0.00 34.10 4.18
201 202 4.823790 AAGTTTGCCGAAATTTAGACGT 57.176 36.364 0.00 0.00 0.00 4.34
202 203 4.141855 AGTTTGCCGAAATTTAGACGTG 57.858 40.909 0.00 0.00 0.00 4.49
203 204 3.562557 AGTTTGCCGAAATTTAGACGTGT 59.437 39.130 0.00 0.00 0.00 4.49
204 205 4.035909 AGTTTGCCGAAATTTAGACGTGTT 59.964 37.500 0.00 0.00 0.00 3.32
205 206 4.555348 TTGCCGAAATTTAGACGTGTTT 57.445 36.364 0.00 0.00 0.00 2.83
206 207 5.670149 TTGCCGAAATTTAGACGTGTTTA 57.330 34.783 0.00 0.00 0.00 2.01
207 208 5.272167 TGCCGAAATTTAGACGTGTTTAG 57.728 39.130 0.00 0.00 0.00 1.85
208 209 4.086574 GCCGAAATTTAGACGTGTTTAGC 58.913 43.478 0.00 0.00 0.00 3.09
209 210 4.644954 CCGAAATTTAGACGTGTTTAGCC 58.355 43.478 0.00 0.00 0.00 3.93
210 211 4.320491 CGAAATTTAGACGTGTTTAGCCG 58.680 43.478 0.00 0.00 0.00 5.52
211 212 4.090354 CGAAATTTAGACGTGTTTAGCCGA 59.910 41.667 0.00 0.00 0.00 5.54
212 213 5.388682 CGAAATTTAGACGTGTTTAGCCGAA 60.389 40.000 0.00 0.00 0.00 4.30
213 214 4.916099 ATTTAGACGTGTTTAGCCGAAC 57.084 40.909 0.00 0.00 0.00 3.95
214 215 1.967762 TAGACGTGTTTAGCCGAACG 58.032 50.000 0.00 0.00 41.64 3.95
215 216 4.736165 ACGTGTTTAGCCGAACGT 57.264 50.000 0.00 0.00 43.87 3.99
216 217 2.509845 ACGTGTTTAGCCGAACGTC 58.490 52.632 0.00 0.00 45.41 4.34
217 218 1.270777 ACGTGTTTAGCCGAACGTCG 61.271 55.000 0.00 12.10 45.41 5.12
218 219 1.129209 GTGTTTAGCCGAACGTCGC 59.871 57.895 0.00 0.00 38.82 5.19
219 220 2.023223 TGTTTAGCCGAACGTCGCC 61.023 57.895 0.00 0.00 38.82 5.54
220 221 2.023223 GTTTAGCCGAACGTCGCCA 61.023 57.895 0.00 0.00 38.82 5.69
221 222 1.300775 TTTAGCCGAACGTCGCCAA 60.301 52.632 0.00 0.00 38.82 4.52
222 223 0.879400 TTTAGCCGAACGTCGCCAAA 60.879 50.000 0.00 0.00 38.82 3.28
223 224 1.559149 TTAGCCGAACGTCGCCAAAC 61.559 55.000 0.00 0.00 38.82 2.93
231 232 3.519774 CGTCGCCAAACGTTTTCTT 57.480 47.368 11.66 0.00 44.19 2.52
232 233 1.382163 CGTCGCCAAACGTTTTCTTC 58.618 50.000 11.66 0.00 44.19 2.87
233 234 1.004292 CGTCGCCAAACGTTTTCTTCT 60.004 47.619 11.66 0.00 44.19 2.85
234 235 2.538132 CGTCGCCAAACGTTTTCTTCTT 60.538 45.455 11.66 0.00 44.19 2.52
235 236 3.431856 GTCGCCAAACGTTTTCTTCTTT 58.568 40.909 11.66 0.00 44.19 2.52
236 237 3.239712 GTCGCCAAACGTTTTCTTCTTTG 59.760 43.478 11.66 0.00 44.19 2.77
237 238 3.127203 TCGCCAAACGTTTTCTTCTTTGA 59.873 39.130 11.66 0.00 44.19 2.69
238 239 3.854809 CGCCAAACGTTTTCTTCTTTGAA 59.145 39.130 11.66 0.00 36.87 2.69
239 240 4.324936 CGCCAAACGTTTTCTTCTTTGAAA 59.675 37.500 11.66 0.00 36.87 2.69
240 241 5.164041 CGCCAAACGTTTTCTTCTTTGAAAA 60.164 36.000 11.66 0.00 41.75 2.29
241 242 6.594886 GCCAAACGTTTTCTTCTTTGAAAAA 58.405 32.000 11.66 0.00 44.32 1.94
260 261 5.941948 AAAAATTTAGACACGTCTGGAGG 57.058 39.130 9.98 0.00 40.71 4.30
261 262 2.674796 ATTTAGACACGTCTGGAGGC 57.325 50.000 9.98 0.00 40.71 4.70
262 263 0.242825 TTTAGACACGTCTGGAGGCG 59.757 55.000 9.98 0.00 40.71 5.52
263 264 1.592400 TTAGACACGTCTGGAGGCGG 61.592 60.000 9.98 0.00 40.71 6.13
307 308 4.016706 CTCGCCCCCAGACCGTTT 62.017 66.667 0.00 0.00 0.00 3.60
308 309 3.546714 CTCGCCCCCAGACCGTTTT 62.547 63.158 0.00 0.00 0.00 2.43
309 310 2.596338 CGCCCCCAGACCGTTTTT 60.596 61.111 0.00 0.00 0.00 1.94
340 341 3.146913 CCCCCATGCGGCGATTTT 61.147 61.111 12.98 0.00 0.00 1.82
341 342 1.826054 CCCCCATGCGGCGATTTTA 60.826 57.895 12.98 0.00 0.00 1.52
342 343 1.654220 CCCCATGCGGCGATTTTAG 59.346 57.895 12.98 0.00 0.00 1.85
343 344 1.654220 CCCATGCGGCGATTTTAGG 59.346 57.895 12.98 2.42 0.00 2.69
344 345 1.008538 CCATGCGGCGATTTTAGGC 60.009 57.895 12.98 0.00 0.00 3.93
350 351 3.592814 GCGATTTTAGGCGCCCCC 61.593 66.667 26.15 5.00 46.93 5.40
352 353 2.186826 CGATTTTAGGCGCCCCCTG 61.187 63.158 26.15 2.62 45.91 4.45
353 354 1.226262 GATTTTAGGCGCCCCCTGA 59.774 57.895 26.15 6.15 45.91 3.86
354 355 0.819666 GATTTTAGGCGCCCCCTGAG 60.820 60.000 26.15 0.00 45.91 3.35
355 356 2.284515 ATTTTAGGCGCCCCCTGAGG 62.285 60.000 26.15 0.00 45.91 3.86
376 377 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
377 378 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
378 379 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
379 380 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
380 381 0.749649 ACGGCTGGAGATGCTCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
381 382 0.599728 CGGCTGGAGATGCTCTTAGC 60.600 60.000 12.47 12.47 42.82 3.09
382 383 0.758123 GGCTGGAGATGCTCTTAGCT 59.242 55.000 17.10 0.00 42.97 3.32
383 384 1.540797 GGCTGGAGATGCTCTTAGCTG 60.541 57.143 17.10 0.00 42.97 4.24
384 385 1.411977 GCTGGAGATGCTCTTAGCTGA 59.588 52.381 0.00 0.00 42.97 4.26
385 386 2.158986 GCTGGAGATGCTCTTAGCTGAA 60.159 50.000 0.00 0.00 42.97 3.02
386 387 3.494749 GCTGGAGATGCTCTTAGCTGAAT 60.495 47.826 0.00 0.00 42.97 2.57
387 388 4.262377 GCTGGAGATGCTCTTAGCTGAATA 60.262 45.833 0.00 0.00 42.97 1.75
388 389 5.569227 GCTGGAGATGCTCTTAGCTGAATAT 60.569 44.000 0.00 0.00 42.97 1.28
389 390 6.430962 TGGAGATGCTCTTAGCTGAATATT 57.569 37.500 0.00 0.00 42.97 1.28
390 391 6.835174 TGGAGATGCTCTTAGCTGAATATTT 58.165 36.000 0.00 0.00 42.97 1.40
391 392 6.709397 TGGAGATGCTCTTAGCTGAATATTTG 59.291 38.462 0.00 0.00 42.97 2.32
392 393 6.149142 GGAGATGCTCTTAGCTGAATATTTGG 59.851 42.308 0.00 0.00 42.97 3.28
393 394 6.599445 AGATGCTCTTAGCTGAATATTTGGT 58.401 36.000 0.00 0.00 42.97 3.67
394 395 6.709846 AGATGCTCTTAGCTGAATATTTGGTC 59.290 38.462 0.00 0.00 42.97 4.02
395 396 5.126067 TGCTCTTAGCTGAATATTTGGTCC 58.874 41.667 0.00 0.00 42.97 4.46
396 397 5.126067 GCTCTTAGCTGAATATTTGGTCCA 58.874 41.667 0.00 0.00 38.45 4.02
397 398 5.767168 GCTCTTAGCTGAATATTTGGTCCAT 59.233 40.000 0.00 0.00 38.45 3.41
398 399 6.293845 GCTCTTAGCTGAATATTTGGTCCATG 60.294 42.308 0.00 0.00 38.45 3.66
399 400 6.899089 TCTTAGCTGAATATTTGGTCCATGA 58.101 36.000 0.00 0.00 0.00 3.07
400 401 7.345691 TCTTAGCTGAATATTTGGTCCATGAA 58.654 34.615 0.00 0.00 0.00 2.57
401 402 7.833682 TCTTAGCTGAATATTTGGTCCATGAAA 59.166 33.333 0.00 0.00 0.00 2.69
402 403 8.537728 TTAGCTGAATATTTGGTCCATGAAAT 57.462 30.769 0.00 0.00 0.00 2.17
403 404 7.427989 AGCTGAATATTTGGTCCATGAAATT 57.572 32.000 0.00 0.00 0.00 1.82
404 405 7.270047 AGCTGAATATTTGGTCCATGAAATTG 58.730 34.615 0.00 0.00 0.00 2.32
405 406 7.124599 AGCTGAATATTTGGTCCATGAAATTGA 59.875 33.333 0.00 0.00 0.00 2.57
406 407 7.437267 GCTGAATATTTGGTCCATGAAATTGAG 59.563 37.037 0.00 0.00 0.00 3.02
407 408 7.784037 TGAATATTTGGTCCATGAAATTGAGG 58.216 34.615 0.00 0.00 0.00 3.86
408 409 6.736110 ATATTTGGTCCATGAAATTGAGGG 57.264 37.500 0.00 0.00 0.00 4.30
409 410 3.824001 TTGGTCCATGAAATTGAGGGA 57.176 42.857 0.00 0.00 0.00 4.20
410 411 3.085952 TGGTCCATGAAATTGAGGGAC 57.914 47.619 7.73 7.73 45.68 4.46
413 414 4.907879 GTCCATGAAATTGAGGGACATC 57.092 45.455 11.17 0.00 45.70 3.06
414 415 4.272489 GTCCATGAAATTGAGGGACATCA 58.728 43.478 11.17 0.00 45.70 3.07
415 416 4.706476 GTCCATGAAATTGAGGGACATCAA 59.294 41.667 11.17 1.68 45.70 2.57
416 417 4.706476 TCCATGAAATTGAGGGACATCAAC 59.294 41.667 1.17 0.00 41.76 3.18
417 418 4.439153 CCATGAAATTGAGGGACATCAACG 60.439 45.833 1.17 0.00 41.76 4.10
418 419 4.014569 TGAAATTGAGGGACATCAACGA 57.985 40.909 1.17 0.00 41.76 3.85
419 420 4.393834 TGAAATTGAGGGACATCAACGAA 58.606 39.130 1.17 0.00 41.76 3.85
420 421 4.824537 TGAAATTGAGGGACATCAACGAAA 59.175 37.500 1.17 0.00 41.76 3.46
421 422 5.048782 TGAAATTGAGGGACATCAACGAAAG 60.049 40.000 1.17 0.00 41.76 2.62
422 423 3.762407 TTGAGGGACATCAACGAAAGA 57.238 42.857 0.00 0.00 34.31 2.52
423 424 3.762407 TGAGGGACATCAACGAAAGAA 57.238 42.857 0.00 0.00 0.00 2.52
424 425 3.399330 TGAGGGACATCAACGAAAGAAC 58.601 45.455 0.00 0.00 0.00 3.01
425 426 3.071023 TGAGGGACATCAACGAAAGAACT 59.929 43.478 0.00 0.00 0.00 3.01
426 427 3.665190 AGGGACATCAACGAAAGAACTC 58.335 45.455 0.00 0.00 0.00 3.01
427 428 3.071023 AGGGACATCAACGAAAGAACTCA 59.929 43.478 0.00 0.00 0.00 3.41
428 429 3.813166 GGGACATCAACGAAAGAACTCAA 59.187 43.478 0.00 0.00 0.00 3.02
429 430 4.319549 GGGACATCAACGAAAGAACTCAAC 60.320 45.833 0.00 0.00 0.00 3.18
430 431 4.446234 GACATCAACGAAAGAACTCAACG 58.554 43.478 0.00 0.00 0.00 4.10
431 432 3.218398 CATCAACGAAAGAACTCAACGC 58.782 45.455 0.00 0.00 0.00 4.84
432 433 2.546778 TCAACGAAAGAACTCAACGCT 58.453 42.857 0.00 0.00 0.00 5.07
433 434 2.538449 TCAACGAAAGAACTCAACGCTC 59.462 45.455 0.00 0.00 0.00 5.03
434 435 1.499049 ACGAAAGAACTCAACGCTCC 58.501 50.000 0.00 0.00 0.00 4.70
435 436 1.068741 ACGAAAGAACTCAACGCTCCT 59.931 47.619 0.00 0.00 0.00 3.69
436 437 1.457303 CGAAAGAACTCAACGCTCCTG 59.543 52.381 0.00 0.00 0.00 3.86
437 438 1.195674 GAAAGAACTCAACGCTCCTGC 59.804 52.381 0.00 0.00 0.00 4.85
438 439 0.394565 AAGAACTCAACGCTCCTGCT 59.605 50.000 0.00 0.00 36.97 4.24
439 440 1.257743 AGAACTCAACGCTCCTGCTA 58.742 50.000 0.00 0.00 36.97 3.49
440 441 1.618837 AGAACTCAACGCTCCTGCTAA 59.381 47.619 0.00 0.00 36.97 3.09
441 442 2.037251 AGAACTCAACGCTCCTGCTAAA 59.963 45.455 0.00 0.00 36.97 1.85
442 443 2.543777 ACTCAACGCTCCTGCTAAAA 57.456 45.000 0.00 0.00 36.97 1.52
443 444 2.846193 ACTCAACGCTCCTGCTAAAAA 58.154 42.857 0.00 0.00 36.97 1.94
461 462 3.945640 AAAACCTGACCCAACTACACT 57.054 42.857 0.00 0.00 0.00 3.55
462 463 3.945640 AAACCTGACCCAACTACACTT 57.054 42.857 0.00 0.00 0.00 3.16
463 464 3.487120 AACCTGACCCAACTACACTTC 57.513 47.619 0.00 0.00 0.00 3.01
464 465 1.697982 ACCTGACCCAACTACACTTCC 59.302 52.381 0.00 0.00 0.00 3.46
465 466 1.337823 CCTGACCCAACTACACTTCCG 60.338 57.143 0.00 0.00 0.00 4.30
466 467 1.343465 CTGACCCAACTACACTTCCGT 59.657 52.381 0.00 0.00 0.00 4.69
467 468 2.559668 CTGACCCAACTACACTTCCGTA 59.440 50.000 0.00 0.00 0.00 4.02
468 469 2.559668 TGACCCAACTACACTTCCGTAG 59.440 50.000 0.00 0.00 43.76 3.51
478 479 1.192428 ACTTCCGTAGTGATGGGACC 58.808 55.000 0.00 0.00 35.19 4.46
479 480 1.191535 CTTCCGTAGTGATGGGACCA 58.808 55.000 0.00 0.00 31.86 4.02
480 481 1.762957 CTTCCGTAGTGATGGGACCAT 59.237 52.381 2.93 2.93 39.69 3.55
481 482 1.119684 TCCGTAGTGATGGGACCATG 58.880 55.000 8.88 0.00 36.70 3.66
482 483 0.830648 CCGTAGTGATGGGACCATGT 59.169 55.000 8.88 0.00 36.70 3.21
483 484 1.473257 CCGTAGTGATGGGACCATGTG 60.473 57.143 8.88 0.00 36.70 3.21
484 485 1.473257 CGTAGTGATGGGACCATGTGG 60.473 57.143 8.88 0.00 36.70 4.17
485 486 0.546122 TAGTGATGGGACCATGTGGC 59.454 55.000 8.88 0.00 39.32 5.01
486 487 1.001020 GTGATGGGACCATGTGGCA 60.001 57.895 8.88 0.00 39.32 4.92
487 488 1.001020 TGATGGGACCATGTGGCAC 60.001 57.895 11.55 11.55 39.32 5.01
488 489 1.001020 GATGGGACCATGTGGCACA 60.001 57.895 24.36 24.36 39.32 4.57
489 490 0.396139 GATGGGACCATGTGGCACAT 60.396 55.000 26.78 26.78 39.91 3.21
497 498 2.853159 ATGTGGCACATGTGGTACG 58.147 52.632 30.96 1.58 44.52 3.67
498 499 1.305219 ATGTGGCACATGTGGTACGC 61.305 55.000 30.96 12.07 44.52 4.42
516 517 9.361315 GTGGTACGCAATTTAAATTATTTTCCT 57.639 29.630 12.98 0.00 39.55 3.36
517 518 9.575783 TGGTACGCAATTTAAATTATTTTCCTC 57.424 29.630 12.98 1.56 0.00 3.71
518 519 9.797556 GGTACGCAATTTAAATTATTTTCCTCT 57.202 29.630 12.98 0.00 0.00 3.69
558 559 9.880157 ATTTGGGTCATCTATTTTGAAATGAAG 57.120 29.630 0.00 0.00 30.45 3.02
559 560 7.408756 TGGGTCATCTATTTTGAAATGAAGG 57.591 36.000 0.00 0.00 30.45 3.46
560 561 6.380846 TGGGTCATCTATTTTGAAATGAAGGG 59.619 38.462 0.00 0.00 30.45 3.95
561 562 6.607198 GGGTCATCTATTTTGAAATGAAGGGA 59.393 38.462 0.00 0.00 30.45 4.20
562 563 7.201857 GGGTCATCTATTTTGAAATGAAGGGAG 60.202 40.741 0.00 0.00 30.45 4.30
563 564 7.340487 GGTCATCTATTTTGAAATGAAGGGAGT 59.660 37.037 0.00 0.00 30.45 3.85
564 565 9.396022 GTCATCTATTTTGAAATGAAGGGAGTA 57.604 33.333 0.00 0.00 30.45 2.59
565 566 9.396022 TCATCTATTTTGAAATGAAGGGAGTAC 57.604 33.333 0.00 0.00 0.00 2.73
566 567 9.401058 CATCTATTTTGAAATGAAGGGAGTACT 57.599 33.333 0.00 0.00 0.00 2.73
593 594 6.954487 AAAACTACCCTGACCTAACAAAAG 57.046 37.500 0.00 0.00 0.00 2.27
594 595 4.017177 ACTACCCTGACCTAACAAAAGC 57.983 45.455 0.00 0.00 0.00 3.51
595 596 2.287977 ACCCTGACCTAACAAAAGCC 57.712 50.000 0.00 0.00 0.00 4.35
596 597 1.203013 ACCCTGACCTAACAAAAGCCC 60.203 52.381 0.00 0.00 0.00 5.19
597 598 1.203001 CCCTGACCTAACAAAAGCCCA 60.203 52.381 0.00 0.00 0.00 5.36
598 599 2.557452 CCCTGACCTAACAAAAGCCCAT 60.557 50.000 0.00 0.00 0.00 4.00
599 600 2.755103 CCTGACCTAACAAAAGCCCATC 59.245 50.000 0.00 0.00 0.00 3.51
600 601 2.420022 CTGACCTAACAAAAGCCCATCG 59.580 50.000 0.00 0.00 0.00 3.84
601 602 1.132453 GACCTAACAAAAGCCCATCGC 59.868 52.381 0.00 0.00 37.98 4.58
613 614 3.127425 GCCCATCGCTATTAACCTTCT 57.873 47.619 0.00 0.00 0.00 2.85
614 615 3.067833 GCCCATCGCTATTAACCTTCTC 58.932 50.000 0.00 0.00 0.00 2.87
615 616 3.494398 GCCCATCGCTATTAACCTTCTCA 60.494 47.826 0.00 0.00 0.00 3.27
616 617 4.058817 CCCATCGCTATTAACCTTCTCAC 58.941 47.826 0.00 0.00 0.00 3.51
617 618 4.058817 CCATCGCTATTAACCTTCTCACC 58.941 47.826 0.00 0.00 0.00 4.02
618 619 3.431922 TCGCTATTAACCTTCTCACCG 57.568 47.619 0.00 0.00 0.00 4.94
619 620 2.756760 TCGCTATTAACCTTCTCACCGT 59.243 45.455 0.00 0.00 0.00 4.83
620 621 2.858344 CGCTATTAACCTTCTCACCGTG 59.142 50.000 0.00 0.00 0.00 4.94
621 622 3.675228 CGCTATTAACCTTCTCACCGTGT 60.675 47.826 0.00 0.00 0.00 4.49
622 623 4.439153 CGCTATTAACCTTCTCACCGTGTA 60.439 45.833 0.00 0.00 0.00 2.90
623 624 5.413499 GCTATTAACCTTCTCACCGTGTAA 58.587 41.667 0.00 0.00 0.00 2.41
624 625 5.519206 GCTATTAACCTTCTCACCGTGTAAG 59.481 44.000 0.00 4.25 0.00 2.34
625 626 5.733620 ATTAACCTTCTCACCGTGTAAGA 57.266 39.130 14.24 2.78 0.00 2.10
626 627 5.534207 TTAACCTTCTCACCGTGTAAGAA 57.466 39.130 14.24 9.22 0.00 2.52
627 628 4.411256 AACCTTCTCACCGTGTAAGAAA 57.589 40.909 14.24 0.00 0.00 2.52
628 629 4.411256 ACCTTCTCACCGTGTAAGAAAA 57.589 40.909 14.24 0.00 0.00 2.29
629 630 4.124970 ACCTTCTCACCGTGTAAGAAAAC 58.875 43.478 14.24 0.00 0.00 2.43
630 631 4.141779 ACCTTCTCACCGTGTAAGAAAACT 60.142 41.667 14.24 0.00 0.00 2.66
631 632 4.211374 CCTTCTCACCGTGTAAGAAAACTG 59.789 45.833 14.24 1.26 0.00 3.16
632 633 3.724374 TCTCACCGTGTAAGAAAACTGG 58.276 45.455 0.00 0.00 0.00 4.00
633 634 3.385433 TCTCACCGTGTAAGAAAACTGGA 59.615 43.478 0.00 0.00 0.00 3.86
634 635 3.724374 TCACCGTGTAAGAAAACTGGAG 58.276 45.455 0.00 0.00 0.00 3.86
635 636 3.133362 TCACCGTGTAAGAAAACTGGAGT 59.867 43.478 0.00 0.00 0.00 3.85
636 637 4.341806 TCACCGTGTAAGAAAACTGGAGTA 59.658 41.667 0.00 0.00 0.00 2.59
637 638 5.011329 TCACCGTGTAAGAAAACTGGAGTAT 59.989 40.000 0.00 0.00 0.00 2.12
638 639 5.699458 CACCGTGTAAGAAAACTGGAGTATT 59.301 40.000 0.00 0.00 0.00 1.89
639 640 6.204108 CACCGTGTAAGAAAACTGGAGTATTT 59.796 38.462 0.00 0.00 0.00 1.40
640 641 6.426025 ACCGTGTAAGAAAACTGGAGTATTTC 59.574 38.462 0.00 0.00 34.14 2.17
641 642 6.649557 CCGTGTAAGAAAACTGGAGTATTTCT 59.350 38.462 9.37 9.37 43.32 2.52
642 643 7.148623 CCGTGTAAGAAAACTGGAGTATTTCTC 60.149 40.741 12.97 0.00 41.28 2.87
643 644 7.384115 CGTGTAAGAAAACTGGAGTATTTCTCA 59.616 37.037 12.97 8.28 41.28 3.27
644 645 9.052759 GTGTAAGAAAACTGGAGTATTTCTCAA 57.947 33.333 12.97 6.49 41.28 3.02
645 646 9.621629 TGTAAGAAAACTGGAGTATTTCTCAAA 57.378 29.630 12.97 0.00 41.28 2.69
648 649 8.980481 AGAAAACTGGAGTATTTCTCAAAAGA 57.020 30.769 9.37 0.00 44.40 2.52
649 650 9.408648 AGAAAACTGGAGTATTTCTCAAAAGAA 57.591 29.630 9.37 0.00 44.40 2.52
661 662 5.545063 TCTCAAAAGAAAATTGGAACCCC 57.455 39.130 0.00 0.00 0.00 4.95
662 663 5.215845 TCTCAAAAGAAAATTGGAACCCCT 58.784 37.500 0.00 0.00 0.00 4.79
663 664 5.070313 TCTCAAAAGAAAATTGGAACCCCTG 59.930 40.000 0.00 0.00 0.00 4.45
674 675 1.145119 GGAACCCCTGAGAAAACTGGT 59.855 52.381 0.00 0.00 0.00 4.00
740 742 2.810274 GACTGAGACTTTTGCATGCTGA 59.190 45.455 20.33 4.61 0.00 4.26
752 761 1.670967 GCATGCTGAAAACCCAAGAGC 60.671 52.381 11.37 0.00 0.00 4.09
753 762 0.883833 ATGCTGAAAACCCAAGAGCG 59.116 50.000 0.00 0.00 32.05 5.03
754 763 1.172180 TGCTGAAAACCCAAGAGCGG 61.172 55.000 0.00 0.00 32.05 5.52
774 783 4.676363 CTCTCCTCGAGCCTTCCT 57.324 61.111 6.99 0.00 31.99 3.36
775 784 2.894858 CTCTCCTCGAGCCTTCCTT 58.105 57.895 6.99 0.00 31.99 3.36
776 785 0.744281 CTCTCCTCGAGCCTTCCTTC 59.256 60.000 6.99 0.00 31.99 3.46
777 786 0.333312 TCTCCTCGAGCCTTCCTTCT 59.667 55.000 6.99 0.00 0.00 2.85
778 787 1.564818 TCTCCTCGAGCCTTCCTTCTA 59.435 52.381 6.99 0.00 0.00 2.10
779 788 2.025226 TCTCCTCGAGCCTTCCTTCTAA 60.025 50.000 6.99 0.00 0.00 2.10
780 789 2.761208 CTCCTCGAGCCTTCCTTCTAAA 59.239 50.000 6.99 0.00 0.00 1.85
781 790 3.170717 TCCTCGAGCCTTCCTTCTAAAA 58.829 45.455 6.99 0.00 0.00 1.52
782 791 3.581332 TCCTCGAGCCTTCCTTCTAAAAA 59.419 43.478 6.99 0.00 0.00 1.94
783 792 3.935828 CCTCGAGCCTTCCTTCTAAAAAG 59.064 47.826 6.99 0.00 0.00 2.27
784 793 4.322801 CCTCGAGCCTTCCTTCTAAAAAGA 60.323 45.833 6.99 0.00 0.00 2.52
785 794 5.223449 TCGAGCCTTCCTTCTAAAAAGAA 57.777 39.130 0.00 0.00 0.00 2.52
786 795 4.995487 TCGAGCCTTCCTTCTAAAAAGAAC 59.005 41.667 0.00 0.00 0.00 3.01
787 796 4.154375 CGAGCCTTCCTTCTAAAAAGAACC 59.846 45.833 0.00 0.00 0.00 3.62
788 797 4.408276 AGCCTTCCTTCTAAAAAGAACCC 58.592 43.478 0.00 0.00 0.00 4.11
789 798 4.141018 AGCCTTCCTTCTAAAAAGAACCCA 60.141 41.667 0.00 0.00 0.00 4.51
790 799 4.587262 GCCTTCCTTCTAAAAAGAACCCAA 59.413 41.667 0.00 0.00 0.00 4.12
791 800 5.279006 GCCTTCCTTCTAAAAAGAACCCAAG 60.279 44.000 0.00 0.00 0.00 3.61
792 801 6.068670 CCTTCCTTCTAAAAAGAACCCAAGA 58.931 40.000 0.00 0.00 0.00 3.02
793 802 6.207614 CCTTCCTTCTAAAAAGAACCCAAGAG 59.792 42.308 0.00 0.00 0.00 2.85
917 934 1.265095 GGCACGAACATGCTCCATATG 59.735 52.381 0.00 0.00 45.38 1.78
924 941 5.011023 ACGAACATGCTCCATATGATGTCTA 59.989 40.000 3.65 0.00 0.00 2.59
940 957 6.365970 GATGTCTACATCCCATGGTATTCT 57.634 41.667 11.73 0.00 45.24 2.40
1128 1161 2.442188 CGACGACTTAACCGCTGGC 61.442 63.158 0.00 0.00 0.00 4.85
1520 1592 2.608988 CCTGTGCCAGGTCCTCCT 60.609 66.667 11.85 0.00 45.82 3.69
1670 1742 2.449031 ATTCTCGTCGCCCAGCACAA 62.449 55.000 0.00 0.00 0.00 3.33
1806 1908 4.224274 AAACCGGACCGCGACACA 62.224 61.111 9.46 0.00 0.00 3.72
2277 2591 1.001860 TGCATCCATGACGACTCACAA 59.998 47.619 0.00 0.00 0.00 3.33
2287 2601 4.546570 TGACGACTCACAAGTGTATTCTG 58.453 43.478 0.00 0.00 35.28 3.02
2296 2610 3.201290 CAAGTGTATTCTGCCTAGCCAG 58.799 50.000 0.00 0.00 0.00 4.85
2337 2652 7.672983 TCTTAAAAATCAGTGTAGCCTTCAG 57.327 36.000 0.00 0.00 0.00 3.02
2340 2655 5.695851 AAAATCAGTGTAGCCTTCAGTTG 57.304 39.130 0.00 0.00 0.00 3.16
2343 2658 3.466836 TCAGTGTAGCCTTCAGTTGTTG 58.533 45.455 0.00 0.00 0.00 3.33
2344 2659 3.118408 TCAGTGTAGCCTTCAGTTGTTGT 60.118 43.478 0.00 0.00 0.00 3.32
2346 2661 3.627577 AGTGTAGCCTTCAGTTGTTGTTG 59.372 43.478 0.00 0.00 0.00 3.33
2354 2675 5.288472 GCCTTCAGTTGTTGTTGTTGTAAAG 59.712 40.000 0.00 0.00 0.00 1.85
2373 2694 7.847096 TGTAAAGACACTGGCATCTTAGATTA 58.153 34.615 2.47 0.00 34.01 1.75
2383 2704 7.124298 ACTGGCATCTTAGATTAACAGTGTCTA 59.876 37.037 16.95 0.00 36.66 2.59
2414 2737 2.552155 GGACATACAAGTGAACCCAGCA 60.552 50.000 0.00 0.00 0.00 4.41
2440 2763 5.743467 TGTTGTTTGCTGTGTAGTATTTCG 58.257 37.500 0.00 0.00 0.00 3.46
2461 2784 3.117832 CGCATTACGCTTTTGTCTTTGTG 59.882 43.478 0.00 0.00 39.08 3.33
2467 2790 4.743493 ACGCTTTTGTCTTTGTGTTTCAT 58.257 34.783 0.00 0.00 0.00 2.57
2468 2791 5.885881 ACGCTTTTGTCTTTGTGTTTCATA 58.114 33.333 0.00 0.00 0.00 2.15
2470 2793 5.108254 CGCTTTTGTCTTTGTGTTTCATAGC 60.108 40.000 0.00 0.00 0.00 2.97
2481 2804 2.084546 GTTTCATAGCGGGCTTTCAGT 58.915 47.619 0.00 0.00 0.00 3.41
2484 2807 1.009829 CATAGCGGGCTTTCAGTGTC 58.990 55.000 0.00 0.00 0.00 3.67
2528 2860 2.814336 GCAGTCCCAAACTCCTAACTTG 59.186 50.000 0.00 0.00 35.45 3.16
2529 2861 3.496160 GCAGTCCCAAACTCCTAACTTGA 60.496 47.826 0.00 0.00 35.45 3.02
2530 2862 4.065789 CAGTCCCAAACTCCTAACTTGAC 58.934 47.826 0.00 0.00 35.45 3.18
2531 2863 3.714798 AGTCCCAAACTCCTAACTTGACA 59.285 43.478 0.00 0.00 30.02 3.58
2532 2864 4.351111 AGTCCCAAACTCCTAACTTGACAT 59.649 41.667 0.00 0.00 30.02 3.06
2533 2865 5.070685 GTCCCAAACTCCTAACTTGACATT 58.929 41.667 0.00 0.00 0.00 2.71
2534 2866 5.181433 GTCCCAAACTCCTAACTTGACATTC 59.819 44.000 0.00 0.00 0.00 2.67
2535 2867 5.070001 CCCAAACTCCTAACTTGACATTCA 58.930 41.667 0.00 0.00 0.00 2.57
2536 2868 5.711976 CCCAAACTCCTAACTTGACATTCAT 59.288 40.000 0.00 0.00 0.00 2.57
2537 2869 6.884295 CCCAAACTCCTAACTTGACATTCATA 59.116 38.462 0.00 0.00 0.00 2.15
2538 2870 7.557719 CCCAAACTCCTAACTTGACATTCATAT 59.442 37.037 0.00 0.00 0.00 1.78
2539 2871 9.613428 CCAAACTCCTAACTTGACATTCATATA 57.387 33.333 0.00 0.00 0.00 0.86
2587 2931 4.799564 TGCAAAAGAAGAAAACCTGTGT 57.200 36.364 0.00 0.00 0.00 3.72
2590 2934 5.184096 TGCAAAAGAAGAAAACCTGTGTACA 59.816 36.000 0.00 0.00 0.00 2.90
2599 2943 4.963878 CTGTGTACAGGGCCATCC 57.036 61.111 6.18 0.00 40.20 3.51
2600 2944 1.153369 CTGTGTACAGGGCCATCCG 60.153 63.158 6.18 0.00 40.20 4.18
2614 2958 3.541632 GCCATCCGAATTCAAGTCCTAA 58.458 45.455 6.22 0.00 0.00 2.69
2626 2970 6.588719 TTCAAGTCCTAAATTTGACATGGG 57.411 37.500 11.63 0.00 32.59 4.00
2628 2972 6.785076 TCAAGTCCTAAATTTGACATGGGTA 58.215 36.000 11.63 0.00 32.59 3.69
2639 2983 3.146066 TGACATGGGTACTTGCACTTTC 58.854 45.455 0.00 0.00 0.00 2.62
2689 3033 3.944650 TGCTCAGTGCTCACAAACTTAAA 59.055 39.130 2.63 0.00 43.37 1.52
2801 3276 8.011844 ACACAATACAGATGTAGAAGCTCATA 57.988 34.615 0.00 0.00 33.52 2.15
2814 3289 8.534496 TGTAGAAGCTCATACATATGCACATAT 58.466 33.333 1.58 0.00 34.50 1.78
2831 3306 4.993584 CACATATGCTCACCTCTATGAACC 59.006 45.833 1.58 0.00 0.00 3.62
2835 3310 1.471676 GCTCACCTCTATGAACCCACG 60.472 57.143 0.00 0.00 0.00 4.94
2844 3319 0.537143 ATGAACCCACGTGCACACAT 60.537 50.000 18.64 9.99 26.98 3.21
2847 3322 3.055719 CCCACGTGCACACATCCC 61.056 66.667 18.64 0.00 0.00 3.85
2849 3324 1.600636 CCACGTGCACACATCCCTT 60.601 57.895 18.64 0.00 0.00 3.95
2850 3325 0.321210 CCACGTGCACACATCCCTTA 60.321 55.000 18.64 0.00 0.00 2.69
2915 3391 2.032799 CGCTGTTGTTGCCTTGTCTTTA 59.967 45.455 0.00 0.00 0.00 1.85
3139 3616 4.036380 GTGTTGTTTTGTTGCTAGTAGGCT 59.964 41.667 0.00 0.00 0.00 4.58
3158 3635 1.243342 TGCCTGCCAAGTTTCATCGG 61.243 55.000 0.00 0.00 0.00 4.18
3161 3638 2.917933 CCTGCCAAGTTTCATCGGATA 58.082 47.619 0.00 0.00 0.00 2.59
3450 3942 1.211709 CCGAAACATCCCCAAACGC 59.788 57.895 0.00 0.00 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.082523 ATGGCGGACTGGTGACGG 62.083 66.667 0.00 0.00 44.60 4.79
9 10 2.815211 CATGGCGGACTGGTGACG 60.815 66.667 0.00 0.00 0.00 4.35
10 11 2.436646 CCATGGCGGACTGGTGAC 60.437 66.667 0.00 0.00 36.56 3.67
11 12 4.408821 GCCATGGCGGACTGGTGA 62.409 66.667 23.48 0.00 36.56 4.02
12 13 4.720902 TGCCATGGCGGACTGGTG 62.721 66.667 30.87 0.00 45.51 4.17
13 14 3.965258 TTGCCATGGCGGACTGGT 61.965 61.111 30.87 0.00 45.51 4.00
14 15 3.443045 GTTGCCATGGCGGACTGG 61.443 66.667 30.87 0.00 45.51 4.00
15 16 3.803082 CGTTGCCATGGCGGACTG 61.803 66.667 30.87 21.20 45.51 3.51
38 39 4.351054 GTCCCTGGTGCACCCCTG 62.351 72.222 32.62 21.20 34.29 4.45
56 57 4.821589 CTCCTCCTTGACGCGGCC 62.822 72.222 10.82 0.56 0.00 6.13
57 58 3.296709 TTCTCCTCCTTGACGCGGC 62.297 63.158 12.47 8.67 0.00 6.53
58 59 1.153745 CTTCTCCTCCTTGACGCGG 60.154 63.158 12.47 0.00 0.00 6.46
59 60 0.243907 TTCTTCTCCTCCTTGACGCG 59.756 55.000 3.53 3.53 0.00 6.01
60 61 1.715993 GTTCTTCTCCTCCTTGACGC 58.284 55.000 0.00 0.00 0.00 5.19
61 62 1.540267 TCGTTCTTCTCCTCCTTGACG 59.460 52.381 0.00 0.00 0.00 4.35
62 63 2.668834 CGTCGTTCTTCTCCTCCTTGAC 60.669 54.545 0.00 0.00 0.00 3.18
63 64 1.540267 CGTCGTTCTTCTCCTCCTTGA 59.460 52.381 0.00 0.00 0.00 3.02
64 65 1.540267 TCGTCGTTCTTCTCCTCCTTG 59.460 52.381 0.00 0.00 0.00 3.61
65 66 1.906990 TCGTCGTTCTTCTCCTCCTT 58.093 50.000 0.00 0.00 0.00 3.36
66 67 1.746220 CATCGTCGTTCTTCTCCTCCT 59.254 52.381 0.00 0.00 0.00 3.69
67 68 1.743958 TCATCGTCGTTCTTCTCCTCC 59.256 52.381 0.00 0.00 0.00 4.30
68 69 2.788030 GTCATCGTCGTTCTTCTCCTC 58.212 52.381 0.00 0.00 0.00 3.71
69 70 1.130749 CGTCATCGTCGTTCTTCTCCT 59.869 52.381 0.00 0.00 0.00 3.69
70 71 1.536149 CGTCATCGTCGTTCTTCTCC 58.464 55.000 0.00 0.00 0.00 3.71
71 72 1.536149 CCGTCATCGTCGTTCTTCTC 58.464 55.000 0.00 0.00 35.01 2.87
72 73 0.456312 GCCGTCATCGTCGTTCTTCT 60.456 55.000 0.00 0.00 35.01 2.85
73 74 1.730593 CGCCGTCATCGTCGTTCTTC 61.731 60.000 0.00 0.00 33.79 2.87
74 75 1.800315 CGCCGTCATCGTCGTTCTT 60.800 57.895 0.00 0.00 33.79 2.52
75 76 2.202440 CGCCGTCATCGTCGTTCT 60.202 61.111 0.00 0.00 33.79 3.01
76 77 3.245315 CCGCCGTCATCGTCGTTC 61.245 66.667 0.00 0.00 36.71 3.95
93 94 4.157958 AGTAGTCGCCGTCGTCGC 62.158 66.667 0.00 0.00 36.96 5.19
94 95 2.021106 GAGTAGTCGCCGTCGTCG 59.979 66.667 0.00 0.00 36.96 5.12
95 96 2.402787 GGAGTAGTCGCCGTCGTC 59.597 66.667 0.00 0.00 36.96 4.20
103 104 1.868251 GCTGAACGCGGAGTAGTCG 60.868 63.158 12.47 0.00 0.00 4.18
104 105 0.388134 TTGCTGAACGCGGAGTAGTC 60.388 55.000 12.47 0.00 43.27 2.59
105 106 0.388649 CTTGCTGAACGCGGAGTAGT 60.389 55.000 12.47 0.00 43.27 2.73
106 107 0.388649 ACTTGCTGAACGCGGAGTAG 60.389 55.000 12.47 4.20 43.27 2.57
107 108 0.032952 AACTTGCTGAACGCGGAGTA 59.967 50.000 12.47 0.00 43.27 2.59
108 109 1.222115 GAACTTGCTGAACGCGGAGT 61.222 55.000 12.47 0.00 43.27 3.85
109 110 0.946221 AGAACTTGCTGAACGCGGAG 60.946 55.000 12.47 4.16 43.27 4.63
110 111 0.531974 AAGAACTTGCTGAACGCGGA 60.532 50.000 12.47 0.00 43.27 5.54
111 112 0.307760 AAAGAACTTGCTGAACGCGG 59.692 50.000 12.47 0.00 43.27 6.46
112 113 2.105323 AAAAGAACTTGCTGAACGCG 57.895 45.000 3.53 3.53 43.27 6.01
113 114 3.179048 ACAAAAAGAACTTGCTGAACGC 58.821 40.909 0.00 0.00 39.77 4.84
114 115 5.806286 TCTACAAAAAGAACTTGCTGAACG 58.194 37.500 0.00 0.00 0.00 3.95
146 147 4.486090 AGATATGTTCGCGGCTTACATAG 58.514 43.478 20.76 0.00 37.95 2.23
147 148 4.514781 AGATATGTTCGCGGCTTACATA 57.485 40.909 19.40 19.40 38.64 2.29
148 149 3.386768 AGATATGTTCGCGGCTTACAT 57.613 42.857 6.13 17.09 36.53 2.29
149 150 2.882927 AGATATGTTCGCGGCTTACA 57.117 45.000 6.13 6.50 0.00 2.41
150 151 8.691727 CATATATTAGATATGTTCGCGGCTTAC 58.308 37.037 6.13 0.09 0.00 2.34
151 152 7.381408 GCATATATTAGATATGTTCGCGGCTTA 59.619 37.037 6.13 3.01 35.14 3.09
152 153 6.201044 GCATATATTAGATATGTTCGCGGCTT 59.799 38.462 6.13 0.57 35.14 4.35
153 154 5.692204 GCATATATTAGATATGTTCGCGGCT 59.308 40.000 6.13 0.00 35.14 5.52
154 155 5.107453 GGCATATATTAGATATGTTCGCGGC 60.107 44.000 6.13 0.00 35.14 6.53
155 156 5.983118 TGGCATATATTAGATATGTTCGCGG 59.017 40.000 6.13 0.00 35.14 6.46
156 157 7.463469 TTGGCATATATTAGATATGTTCGCG 57.537 36.000 0.00 0.00 35.14 5.87
157 158 8.883731 ACTTTGGCATATATTAGATATGTTCGC 58.116 33.333 8.38 0.00 35.14 4.70
177 178 4.381566 CGTCTAAATTTCGGCAAACTTTGG 59.618 41.667 0.00 0.00 0.00 3.28
178 179 4.973663 ACGTCTAAATTTCGGCAAACTTTG 59.026 37.500 0.00 0.00 0.00 2.77
179 180 4.973663 CACGTCTAAATTTCGGCAAACTTT 59.026 37.500 0.00 0.00 0.00 2.66
180 181 4.035909 ACACGTCTAAATTTCGGCAAACTT 59.964 37.500 0.00 0.00 0.00 2.66
181 182 3.562557 ACACGTCTAAATTTCGGCAAACT 59.437 39.130 0.00 0.00 0.00 2.66
182 183 3.880610 ACACGTCTAAATTTCGGCAAAC 58.119 40.909 0.00 0.00 0.00 2.93
183 184 4.555348 AACACGTCTAAATTTCGGCAAA 57.445 36.364 0.00 0.00 0.00 3.68
184 185 4.555348 AAACACGTCTAAATTTCGGCAA 57.445 36.364 0.00 0.00 0.00 4.52
185 186 4.377635 GCTAAACACGTCTAAATTTCGGCA 60.378 41.667 0.00 0.00 0.00 5.69
186 187 4.086574 GCTAAACACGTCTAAATTTCGGC 58.913 43.478 0.00 0.00 0.00 5.54
187 188 4.644954 GGCTAAACACGTCTAAATTTCGG 58.355 43.478 0.00 0.00 0.00 4.30
188 189 4.090354 TCGGCTAAACACGTCTAAATTTCG 59.910 41.667 0.00 0.00 0.00 3.46
189 190 5.520022 TCGGCTAAACACGTCTAAATTTC 57.480 39.130 0.00 0.00 0.00 2.17
190 191 5.613142 CGTTCGGCTAAACACGTCTAAATTT 60.613 40.000 0.00 0.00 0.00 1.82
191 192 4.143263 CGTTCGGCTAAACACGTCTAAATT 60.143 41.667 0.00 0.00 0.00 1.82
192 193 3.365820 CGTTCGGCTAAACACGTCTAAAT 59.634 43.478 0.00 0.00 0.00 1.40
193 194 2.725723 CGTTCGGCTAAACACGTCTAAA 59.274 45.455 0.00 0.00 0.00 1.85
194 195 2.287547 ACGTTCGGCTAAACACGTCTAA 60.288 45.455 0.00 0.00 41.97 2.10
195 196 1.266718 ACGTTCGGCTAAACACGTCTA 59.733 47.619 0.00 0.00 41.97 2.59
196 197 0.031178 ACGTTCGGCTAAACACGTCT 59.969 50.000 0.00 0.00 41.97 4.18
197 198 2.509845 ACGTTCGGCTAAACACGTC 58.490 52.632 0.00 0.00 41.97 4.34
198 199 4.736165 ACGTTCGGCTAAACACGT 57.264 50.000 0.00 0.00 40.94 4.49
199 200 1.409579 CGACGTTCGGCTAAACACG 59.590 57.895 0.00 0.00 36.00 4.49
200 201 1.129209 GCGACGTTCGGCTAAACAC 59.871 57.895 8.96 0.00 40.84 3.32
201 202 3.541191 GCGACGTTCGGCTAAACA 58.459 55.556 8.96 0.00 40.84 2.83
214 215 2.750301 AGAAGAAAACGTTTGGCGAC 57.250 45.000 15.46 9.25 44.77 5.19
215 216 3.127203 TCAAAGAAGAAAACGTTTGGCGA 59.873 39.130 15.46 0.66 44.77 5.54
216 217 4.324936 TTTCAAAGAAGAAAACGTTTGGCG 59.675 37.500 15.46 0.00 38.33 5.69
217 218 5.771602 TTTCAAAGAAGAAAACGTTTGGC 57.228 34.783 15.46 10.04 34.77 4.52
238 239 4.215613 GCCTCCAGACGTGTCTAAATTTTT 59.784 41.667 1.54 0.00 37.98 1.94
239 240 3.751698 GCCTCCAGACGTGTCTAAATTTT 59.248 43.478 1.54 0.00 37.98 1.82
240 241 3.335579 GCCTCCAGACGTGTCTAAATTT 58.664 45.455 1.54 0.00 37.98 1.82
241 242 2.674177 CGCCTCCAGACGTGTCTAAATT 60.674 50.000 1.54 0.00 37.98 1.82
242 243 1.135083 CGCCTCCAGACGTGTCTAAAT 60.135 52.381 1.54 0.00 37.98 1.40
243 244 0.242825 CGCCTCCAGACGTGTCTAAA 59.757 55.000 1.54 0.00 37.98 1.85
244 245 1.592400 CCGCCTCCAGACGTGTCTAA 61.592 60.000 1.54 0.00 37.98 2.10
245 246 2.044555 CCGCCTCCAGACGTGTCTA 61.045 63.158 1.54 0.00 37.98 2.59
246 247 3.374402 CCGCCTCCAGACGTGTCT 61.374 66.667 0.00 0.00 41.37 3.41
290 291 3.546714 AAAACGGTCTGGGGGCGAG 62.547 63.158 0.00 0.00 0.00 5.03
291 292 3.122727 AAAAACGGTCTGGGGGCGA 62.123 57.895 0.00 0.00 0.00 5.54
292 293 2.596338 AAAAACGGTCTGGGGGCG 60.596 61.111 0.00 0.00 0.00 6.13
325 326 1.654220 CCTAAAATCGCCGCATGGG 59.346 57.895 2.06 2.06 39.58 4.00
326 327 1.008538 GCCTAAAATCGCCGCATGG 60.009 57.895 0.00 0.00 38.77 3.66
327 328 1.369209 CGCCTAAAATCGCCGCATG 60.369 57.895 0.00 0.00 0.00 4.06
328 329 3.022287 CGCCTAAAATCGCCGCAT 58.978 55.556 0.00 0.00 0.00 4.73
329 330 3.871574 GCGCCTAAAATCGCCGCA 61.872 61.111 0.00 0.00 45.01 5.69
334 335 2.186826 CAGGGGGCGCCTAAAATCG 61.187 63.158 28.56 5.85 0.00 3.34
335 336 0.819666 CTCAGGGGGCGCCTAAAATC 60.820 60.000 28.56 8.16 0.00 2.17
336 337 1.227383 CTCAGGGGGCGCCTAAAAT 59.773 57.895 28.56 5.30 0.00 1.82
337 338 2.674754 CTCAGGGGGCGCCTAAAA 59.325 61.111 28.56 10.74 0.00 1.52
338 339 3.407967 CCTCAGGGGGCGCCTAAA 61.408 66.667 28.56 13.28 0.00 1.85
359 360 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
370 371 6.072783 GGACCAAATATTCAGCTAAGAGCATC 60.073 42.308 0.64 0.00 45.56 3.91
371 372 5.767168 GGACCAAATATTCAGCTAAGAGCAT 59.233 40.000 0.64 0.00 45.56 3.79
372 373 5.126067 GGACCAAATATTCAGCTAAGAGCA 58.874 41.667 0.64 0.00 45.56 4.26
373 374 5.126067 TGGACCAAATATTCAGCTAAGAGC 58.874 41.667 0.00 0.00 42.84 4.09
374 375 6.994496 TCATGGACCAAATATTCAGCTAAGAG 59.006 38.462 0.00 0.00 0.00 2.85
375 376 6.899089 TCATGGACCAAATATTCAGCTAAGA 58.101 36.000 0.00 0.00 0.00 2.10
376 377 7.572523 TTCATGGACCAAATATTCAGCTAAG 57.427 36.000 0.00 0.00 0.00 2.18
377 378 7.953005 TTTCATGGACCAAATATTCAGCTAA 57.047 32.000 0.00 0.00 0.00 3.09
378 379 8.415553 CAATTTCATGGACCAAATATTCAGCTA 58.584 33.333 0.00 0.00 0.00 3.32
379 380 7.124599 TCAATTTCATGGACCAAATATTCAGCT 59.875 33.333 0.00 0.00 0.00 4.24
380 381 7.267128 TCAATTTCATGGACCAAATATTCAGC 58.733 34.615 0.00 0.00 0.00 4.26
381 382 7.924412 CCTCAATTTCATGGACCAAATATTCAG 59.076 37.037 0.00 0.00 0.00 3.02
382 383 7.147689 CCCTCAATTTCATGGACCAAATATTCA 60.148 37.037 0.00 0.00 0.00 2.57
383 384 7.069826 TCCCTCAATTTCATGGACCAAATATTC 59.930 37.037 0.00 0.00 0.00 1.75
384 385 6.902416 TCCCTCAATTTCATGGACCAAATATT 59.098 34.615 0.00 0.00 0.00 1.28
385 386 6.324770 GTCCCTCAATTTCATGGACCAAATAT 59.675 38.462 0.00 0.00 39.65 1.28
386 387 5.656416 GTCCCTCAATTTCATGGACCAAATA 59.344 40.000 0.00 0.00 39.65 1.40
387 388 4.467438 GTCCCTCAATTTCATGGACCAAAT 59.533 41.667 0.00 0.00 39.65 2.32
388 389 3.831911 GTCCCTCAATTTCATGGACCAAA 59.168 43.478 0.00 0.00 39.65 3.28
389 390 3.181424 TGTCCCTCAATTTCATGGACCAA 60.181 43.478 0.00 0.00 43.87 3.67
390 391 2.378208 TGTCCCTCAATTTCATGGACCA 59.622 45.455 0.00 0.00 43.87 4.02
391 392 3.085952 TGTCCCTCAATTTCATGGACC 57.914 47.619 0.00 0.00 43.87 4.46
392 393 4.272489 TGATGTCCCTCAATTTCATGGAC 58.728 43.478 0.00 0.00 44.57 4.02
393 394 4.589647 TGATGTCCCTCAATTTCATGGA 57.410 40.909 0.00 0.00 0.00 3.41
394 395 4.439153 CGTTGATGTCCCTCAATTTCATGG 60.439 45.833 0.00 0.00 37.47 3.66
395 396 4.395854 TCGTTGATGTCCCTCAATTTCATG 59.604 41.667 0.00 0.00 37.47 3.07
396 397 4.588899 TCGTTGATGTCCCTCAATTTCAT 58.411 39.130 0.00 0.00 37.47 2.57
397 398 4.014569 TCGTTGATGTCCCTCAATTTCA 57.985 40.909 0.00 0.00 37.47 2.69
398 399 5.181245 TCTTTCGTTGATGTCCCTCAATTTC 59.819 40.000 0.00 0.00 37.47 2.17
399 400 5.070001 TCTTTCGTTGATGTCCCTCAATTT 58.930 37.500 0.00 0.00 37.47 1.82
400 401 4.651778 TCTTTCGTTGATGTCCCTCAATT 58.348 39.130 0.00 0.00 37.47 2.32
401 402 4.286297 TCTTTCGTTGATGTCCCTCAAT 57.714 40.909 0.00 0.00 37.47 2.57
402 403 3.762407 TCTTTCGTTGATGTCCCTCAA 57.238 42.857 0.00 0.00 32.84 3.02
403 404 3.071023 AGTTCTTTCGTTGATGTCCCTCA 59.929 43.478 0.00 0.00 0.00 3.86
404 405 3.665190 AGTTCTTTCGTTGATGTCCCTC 58.335 45.455 0.00 0.00 0.00 4.30
405 406 3.071023 TGAGTTCTTTCGTTGATGTCCCT 59.929 43.478 0.00 0.00 0.00 4.20
406 407 3.399330 TGAGTTCTTTCGTTGATGTCCC 58.601 45.455 0.00 0.00 0.00 4.46
407 408 4.608445 CGTTGAGTTCTTTCGTTGATGTCC 60.608 45.833 0.00 0.00 0.00 4.02
408 409 4.446234 CGTTGAGTTCTTTCGTTGATGTC 58.554 43.478 0.00 0.00 0.00 3.06
409 410 3.303132 GCGTTGAGTTCTTTCGTTGATGT 60.303 43.478 0.00 0.00 0.00 3.06
410 411 3.059597 AGCGTTGAGTTCTTTCGTTGATG 60.060 43.478 0.00 0.00 0.00 3.07
411 412 3.131396 AGCGTTGAGTTCTTTCGTTGAT 58.869 40.909 0.00 0.00 0.00 2.57
412 413 2.538449 GAGCGTTGAGTTCTTTCGTTGA 59.462 45.455 0.00 0.00 0.00 3.18
413 414 2.348591 GGAGCGTTGAGTTCTTTCGTTG 60.349 50.000 0.00 0.00 0.00 4.10
414 415 1.865340 GGAGCGTTGAGTTCTTTCGTT 59.135 47.619 0.00 0.00 0.00 3.85
415 416 1.068741 AGGAGCGTTGAGTTCTTTCGT 59.931 47.619 0.00 0.00 0.00 3.85
416 417 1.457303 CAGGAGCGTTGAGTTCTTTCG 59.543 52.381 0.00 0.00 0.00 3.46
417 418 1.195674 GCAGGAGCGTTGAGTTCTTTC 59.804 52.381 0.00 0.00 0.00 2.62
418 419 1.230324 GCAGGAGCGTTGAGTTCTTT 58.770 50.000 0.00 0.00 0.00 2.52
419 420 2.919971 GCAGGAGCGTTGAGTTCTT 58.080 52.632 0.00 0.00 0.00 2.52
420 421 4.683432 GCAGGAGCGTTGAGTTCT 57.317 55.556 0.00 0.00 0.00 3.01
440 441 4.245251 AGTGTAGTTGGGTCAGGTTTTT 57.755 40.909 0.00 0.00 0.00 1.94
441 442 3.945640 AGTGTAGTTGGGTCAGGTTTT 57.054 42.857 0.00 0.00 0.00 2.43
442 443 3.434596 GGAAGTGTAGTTGGGTCAGGTTT 60.435 47.826 0.00 0.00 0.00 3.27
443 444 2.105993 GGAAGTGTAGTTGGGTCAGGTT 59.894 50.000 0.00 0.00 0.00 3.50
444 445 1.697982 GGAAGTGTAGTTGGGTCAGGT 59.302 52.381 0.00 0.00 0.00 4.00
445 446 1.337823 CGGAAGTGTAGTTGGGTCAGG 60.338 57.143 0.00 0.00 0.00 3.86
446 447 1.343465 ACGGAAGTGTAGTTGGGTCAG 59.657 52.381 0.00 0.00 46.97 3.51
447 448 1.416243 ACGGAAGTGTAGTTGGGTCA 58.584 50.000 0.00 0.00 46.97 4.02
459 460 2.892727 ATGGTCCCATCACTACGGAAGT 60.893 50.000 0.00 0.00 39.36 3.01
460 461 1.191535 TGGTCCCATCACTACGGAAG 58.808 55.000 0.00 0.00 0.00 3.46
461 462 1.484653 CATGGTCCCATCACTACGGAA 59.515 52.381 0.00 0.00 33.90 4.30
462 463 1.119684 CATGGTCCCATCACTACGGA 58.880 55.000 0.00 0.00 33.90 4.69
463 464 0.830648 ACATGGTCCCATCACTACGG 59.169 55.000 0.00 0.00 33.90 4.02
464 465 1.473257 CCACATGGTCCCATCACTACG 60.473 57.143 0.00 0.00 33.90 3.51
465 466 1.747206 GCCACATGGTCCCATCACTAC 60.747 57.143 0.00 0.00 37.57 2.73
466 467 0.546122 GCCACATGGTCCCATCACTA 59.454 55.000 0.00 0.00 37.57 2.74
467 468 1.304282 GCCACATGGTCCCATCACT 59.696 57.895 0.00 0.00 37.57 3.41
468 469 1.001020 TGCCACATGGTCCCATCAC 60.001 57.895 0.00 0.00 37.57 3.06
469 470 1.001020 GTGCCACATGGTCCCATCA 60.001 57.895 0.00 0.00 37.57 3.07
470 471 0.396139 ATGTGCCACATGGTCCCATC 60.396 55.000 10.06 0.00 37.45 3.51
471 472 1.699137 ATGTGCCACATGGTCCCAT 59.301 52.632 10.06 0.00 37.45 4.00
472 473 3.179284 ATGTGCCACATGGTCCCA 58.821 55.556 10.06 0.00 37.45 4.37
479 480 1.305219 GCGTACCACATGTGCCACAT 61.305 55.000 20.81 4.03 39.91 3.21
480 481 1.963855 GCGTACCACATGTGCCACA 60.964 57.895 20.81 0.00 0.00 4.17
481 482 1.511318 TTGCGTACCACATGTGCCAC 61.511 55.000 20.81 17.22 0.00 5.01
482 483 0.607762 ATTGCGTACCACATGTGCCA 60.608 50.000 20.81 6.92 0.00 4.92
483 484 0.525761 AATTGCGTACCACATGTGCC 59.474 50.000 20.81 9.07 0.00 5.01
484 485 2.346099 AAATTGCGTACCACATGTGC 57.654 45.000 20.81 9.25 0.00 4.57
485 486 6.942886 AATTTAAATTGCGTACCACATGTG 57.057 33.333 19.31 19.31 0.00 3.21
486 487 9.646427 AAATAATTTAAATTGCGTACCACATGT 57.354 25.926 21.19 0.00 0.00 3.21
489 490 9.141400 GGAAAATAATTTAAATTGCGTACCACA 57.859 29.630 21.19 0.80 0.00 4.17
490 491 9.361315 AGGAAAATAATTTAAATTGCGTACCAC 57.639 29.630 21.19 6.87 0.00 4.16
491 492 9.575783 GAGGAAAATAATTTAAATTGCGTACCA 57.424 29.630 21.19 2.17 0.00 3.25
492 493 9.797556 AGAGGAAAATAATTTAAATTGCGTACC 57.202 29.630 21.19 17.25 0.00 3.34
532 533 9.880157 CTTCATTTCAAAATAGATGACCCAAAT 57.120 29.630 0.00 0.00 0.00 2.32
533 534 8.313292 CCTTCATTTCAAAATAGATGACCCAAA 58.687 33.333 0.00 0.00 0.00 3.28
534 535 7.093377 CCCTTCATTTCAAAATAGATGACCCAA 60.093 37.037 0.00 0.00 0.00 4.12
535 536 6.380846 CCCTTCATTTCAAAATAGATGACCCA 59.619 38.462 0.00 0.00 0.00 4.51
536 537 6.607198 TCCCTTCATTTCAAAATAGATGACCC 59.393 38.462 0.00 0.00 0.00 4.46
537 538 7.340487 ACTCCCTTCATTTCAAAATAGATGACC 59.660 37.037 0.00 0.00 0.00 4.02
538 539 8.286191 ACTCCCTTCATTTCAAAATAGATGAC 57.714 34.615 0.00 0.00 0.00 3.06
539 540 9.396022 GTACTCCCTTCATTTCAAAATAGATGA 57.604 33.333 0.00 0.00 0.00 2.92
540 541 9.401058 AGTACTCCCTTCATTTCAAAATAGATG 57.599 33.333 0.00 0.00 0.00 2.90
569 570 6.183360 GCTTTTGTTAGGTCAGGGTAGTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
570 571 5.301045 GCTTTTGTTAGGTCAGGGTAGTTTT 59.699 40.000 0.00 0.00 0.00 2.43
571 572 4.825634 GCTTTTGTTAGGTCAGGGTAGTTT 59.174 41.667 0.00 0.00 0.00 2.66
572 573 4.395625 GCTTTTGTTAGGTCAGGGTAGTT 58.604 43.478 0.00 0.00 0.00 2.24
573 574 3.244805 GGCTTTTGTTAGGTCAGGGTAGT 60.245 47.826 0.00 0.00 0.00 2.73
574 575 3.344515 GGCTTTTGTTAGGTCAGGGTAG 58.655 50.000 0.00 0.00 0.00 3.18
575 576 2.040679 GGGCTTTTGTTAGGTCAGGGTA 59.959 50.000 0.00 0.00 0.00 3.69
576 577 1.203013 GGGCTTTTGTTAGGTCAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
577 578 1.203001 TGGGCTTTTGTTAGGTCAGGG 60.203 52.381 0.00 0.00 0.00 4.45
578 579 2.286365 TGGGCTTTTGTTAGGTCAGG 57.714 50.000 0.00 0.00 0.00 3.86
579 580 2.420022 CGATGGGCTTTTGTTAGGTCAG 59.580 50.000 0.00 0.00 0.00 3.51
580 581 2.432444 CGATGGGCTTTTGTTAGGTCA 58.568 47.619 0.00 0.00 0.00 4.02
581 582 1.132453 GCGATGGGCTTTTGTTAGGTC 59.868 52.381 0.00 0.00 39.11 3.85
582 583 1.173913 GCGATGGGCTTTTGTTAGGT 58.826 50.000 0.00 0.00 39.11 3.08
593 594 3.067833 GAGAAGGTTAATAGCGATGGGC 58.932 50.000 0.00 0.00 44.05 5.36
594 595 4.058817 GTGAGAAGGTTAATAGCGATGGG 58.941 47.826 0.00 0.00 0.00 4.00
595 596 4.058817 GGTGAGAAGGTTAATAGCGATGG 58.941 47.826 0.00 0.00 0.00 3.51
596 597 3.736252 CGGTGAGAAGGTTAATAGCGATG 59.264 47.826 0.00 0.00 0.00 3.84
597 598 3.383825 ACGGTGAGAAGGTTAATAGCGAT 59.616 43.478 0.00 0.00 33.79 4.58
598 599 2.756760 ACGGTGAGAAGGTTAATAGCGA 59.243 45.455 0.00 0.00 33.79 4.93
599 600 2.858344 CACGGTGAGAAGGTTAATAGCG 59.142 50.000 0.74 0.00 35.46 4.26
600 601 3.858247 ACACGGTGAGAAGGTTAATAGC 58.142 45.455 16.29 0.00 0.00 2.97
601 602 6.860080 TCTTACACGGTGAGAAGGTTAATAG 58.140 40.000 16.29 0.00 0.00 1.73
602 603 6.839124 TCTTACACGGTGAGAAGGTTAATA 57.161 37.500 16.29 0.00 0.00 0.98
603 604 5.733620 TCTTACACGGTGAGAAGGTTAAT 57.266 39.130 16.29 0.00 0.00 1.40
604 605 5.534207 TTCTTACACGGTGAGAAGGTTAA 57.466 39.130 16.29 5.79 34.14 2.01
605 606 5.534207 TTTCTTACACGGTGAGAAGGTTA 57.466 39.130 16.29 4.95 38.88 2.85
606 607 4.411256 TTTCTTACACGGTGAGAAGGTT 57.589 40.909 16.29 0.00 38.88 3.50
607 608 4.124970 GTTTTCTTACACGGTGAGAAGGT 58.875 43.478 16.29 0.00 38.88 3.50
608 609 4.211374 CAGTTTTCTTACACGGTGAGAAGG 59.789 45.833 16.29 0.72 38.88 3.46
609 610 4.211374 CCAGTTTTCTTACACGGTGAGAAG 59.789 45.833 16.29 16.30 38.88 2.85
610 611 4.124238 CCAGTTTTCTTACACGGTGAGAA 58.876 43.478 16.29 11.36 36.59 2.87
611 612 3.385433 TCCAGTTTTCTTACACGGTGAGA 59.615 43.478 16.29 5.24 0.00 3.27
612 613 3.724374 TCCAGTTTTCTTACACGGTGAG 58.276 45.455 16.29 2.59 0.00 3.51
613 614 3.133362 ACTCCAGTTTTCTTACACGGTGA 59.867 43.478 16.29 0.00 0.00 4.02
614 615 3.463944 ACTCCAGTTTTCTTACACGGTG 58.536 45.455 6.58 6.58 0.00 4.94
615 616 3.832615 ACTCCAGTTTTCTTACACGGT 57.167 42.857 0.00 0.00 0.00 4.83
616 617 6.649557 AGAAATACTCCAGTTTTCTTACACGG 59.350 38.462 9.35 0.00 34.71 4.94
617 618 7.384115 TGAGAAATACTCCAGTTTTCTTACACG 59.616 37.037 13.46 0.00 44.34 4.49
618 619 8.603242 TGAGAAATACTCCAGTTTTCTTACAC 57.397 34.615 13.46 6.32 44.34 2.90
619 620 9.621629 TTTGAGAAATACTCCAGTTTTCTTACA 57.378 29.630 13.46 8.52 44.34 2.41
622 623 9.408648 TCTTTTGAGAAATACTCCAGTTTTCTT 57.591 29.630 13.46 4.06 44.34 2.52
623 624 8.980481 TCTTTTGAGAAATACTCCAGTTTTCT 57.020 30.769 12.69 12.69 44.34 2.52
628 629 9.971922 CAATTTTCTTTTGAGAAATACTCCAGT 57.028 29.630 2.77 0.00 44.34 4.00
629 630 9.415544 CCAATTTTCTTTTGAGAAATACTCCAG 57.584 33.333 2.77 0.00 44.34 3.86
630 631 9.142014 TCCAATTTTCTTTTGAGAAATACTCCA 57.858 29.630 2.77 0.00 44.34 3.86
631 632 9.981114 TTCCAATTTTCTTTTGAGAAATACTCC 57.019 29.630 2.77 0.00 44.34 3.85
633 634 9.764363 GGTTCCAATTTTCTTTTGAGAAATACT 57.236 29.630 2.77 0.00 37.59 2.12
634 635 8.988934 GGGTTCCAATTTTCTTTTGAGAAATAC 58.011 33.333 2.77 0.00 37.59 1.89
635 636 8.154203 GGGGTTCCAATTTTCTTTTGAGAAATA 58.846 33.333 2.77 0.00 37.59 1.40
636 637 6.998074 GGGGTTCCAATTTTCTTTTGAGAAAT 59.002 34.615 2.77 0.00 37.59 2.17
637 638 6.157820 AGGGGTTCCAATTTTCTTTTGAGAAA 59.842 34.615 0.00 0.00 34.27 2.52
638 639 5.665360 AGGGGTTCCAATTTTCTTTTGAGAA 59.335 36.000 0.00 0.00 34.83 2.87
639 640 5.070313 CAGGGGTTCCAATTTTCTTTTGAGA 59.930 40.000 0.00 0.00 34.83 3.27
640 641 5.070313 TCAGGGGTTCCAATTTTCTTTTGAG 59.930 40.000 0.00 0.00 34.83 3.02
641 642 4.965532 TCAGGGGTTCCAATTTTCTTTTGA 59.034 37.500 0.00 0.00 34.83 2.69
642 643 5.070313 TCTCAGGGGTTCCAATTTTCTTTTG 59.930 40.000 0.00 0.00 34.83 2.44
643 644 5.215845 TCTCAGGGGTTCCAATTTTCTTTT 58.784 37.500 0.00 0.00 34.83 2.27
644 645 4.814967 TCTCAGGGGTTCCAATTTTCTTT 58.185 39.130 0.00 0.00 34.83 2.52
645 646 4.469469 TCTCAGGGGTTCCAATTTTCTT 57.531 40.909 0.00 0.00 34.83 2.52
646 647 4.469469 TTCTCAGGGGTTCCAATTTTCT 57.531 40.909 0.00 0.00 34.83 2.52
647 648 5.070446 AGTTTTCTCAGGGGTTCCAATTTTC 59.930 40.000 0.00 0.00 34.83 2.29
648 649 4.968719 AGTTTTCTCAGGGGTTCCAATTTT 59.031 37.500 0.00 0.00 34.83 1.82
649 650 4.344968 CAGTTTTCTCAGGGGTTCCAATTT 59.655 41.667 0.00 0.00 34.83 1.82
650 651 3.897505 CAGTTTTCTCAGGGGTTCCAATT 59.102 43.478 0.00 0.00 34.83 2.32
651 652 3.500343 CAGTTTTCTCAGGGGTTCCAAT 58.500 45.455 0.00 0.00 34.83 3.16
652 653 2.424234 CCAGTTTTCTCAGGGGTTCCAA 60.424 50.000 0.00 0.00 34.83 3.53
653 654 1.144913 CCAGTTTTCTCAGGGGTTCCA 59.855 52.381 0.00 0.00 34.83 3.53
654 655 1.145119 ACCAGTTTTCTCAGGGGTTCC 59.855 52.381 0.00 0.00 0.00 3.62
655 656 2.658807 ACCAGTTTTCTCAGGGGTTC 57.341 50.000 0.00 0.00 0.00 3.62
656 657 4.741928 AATACCAGTTTTCTCAGGGGTT 57.258 40.909 0.00 0.00 0.00 4.11
657 658 4.407365 CAAATACCAGTTTTCTCAGGGGT 58.593 43.478 0.00 0.00 0.00 4.95
658 659 3.193479 GCAAATACCAGTTTTCTCAGGGG 59.807 47.826 0.00 0.00 0.00 4.79
659 660 3.826157 TGCAAATACCAGTTTTCTCAGGG 59.174 43.478 0.00 0.00 0.00 4.45
660 661 4.613622 CGTGCAAATACCAGTTTTCTCAGG 60.614 45.833 0.00 0.00 0.00 3.86
661 662 4.466828 CGTGCAAATACCAGTTTTCTCAG 58.533 43.478 0.00 0.00 0.00 3.35
662 663 3.252215 CCGTGCAAATACCAGTTTTCTCA 59.748 43.478 0.00 0.00 0.00 3.27
663 664 3.500680 TCCGTGCAAATACCAGTTTTCTC 59.499 43.478 0.00 0.00 0.00 2.87
674 675 1.864711 GCGCTAAGATCCGTGCAAATA 59.135 47.619 0.00 0.00 36.69 1.40
758 767 0.333312 AGAAGGAAGGCTCGAGGAGA 59.667 55.000 15.58 0.00 0.00 3.71
759 768 2.060050 TAGAAGGAAGGCTCGAGGAG 57.940 55.000 15.58 0.00 0.00 3.69
760 769 2.526888 TTAGAAGGAAGGCTCGAGGA 57.473 50.000 15.58 0.00 0.00 3.71
761 770 3.611766 TTTTAGAAGGAAGGCTCGAGG 57.388 47.619 15.58 0.00 0.00 4.63
762 771 4.822026 TCTTTTTAGAAGGAAGGCTCGAG 58.178 43.478 8.45 8.45 0.00 4.04
763 772 4.884668 TCTTTTTAGAAGGAAGGCTCGA 57.115 40.909 0.00 0.00 0.00 4.04
764 773 4.154375 GGTTCTTTTTAGAAGGAAGGCTCG 59.846 45.833 0.00 0.00 32.32 5.03
765 774 4.459685 GGGTTCTTTTTAGAAGGAAGGCTC 59.540 45.833 0.00 0.00 32.32 4.70
766 775 4.141018 TGGGTTCTTTTTAGAAGGAAGGCT 60.141 41.667 0.00 0.00 32.32 4.58
767 776 4.149598 TGGGTTCTTTTTAGAAGGAAGGC 58.850 43.478 0.00 0.00 32.32 4.35
768 777 6.068670 TCTTGGGTTCTTTTTAGAAGGAAGG 58.931 40.000 0.00 0.00 32.32 3.46
769 778 6.294231 GCTCTTGGGTTCTTTTTAGAAGGAAG 60.294 42.308 0.00 0.00 32.32 3.46
770 779 5.535030 GCTCTTGGGTTCTTTTTAGAAGGAA 59.465 40.000 0.00 0.00 0.00 3.36
771 780 5.070685 GCTCTTGGGTTCTTTTTAGAAGGA 58.929 41.667 0.00 0.00 0.00 3.36
772 781 4.218635 GGCTCTTGGGTTCTTTTTAGAAGG 59.781 45.833 0.00 0.00 0.00 3.46
773 782 4.827284 TGGCTCTTGGGTTCTTTTTAGAAG 59.173 41.667 0.00 0.00 0.00 2.85
774 783 4.798882 TGGCTCTTGGGTTCTTTTTAGAA 58.201 39.130 0.00 0.00 0.00 2.10
775 784 4.447138 TGGCTCTTGGGTTCTTTTTAGA 57.553 40.909 0.00 0.00 0.00 2.10
776 785 4.827284 TCTTGGCTCTTGGGTTCTTTTTAG 59.173 41.667 0.00 0.00 0.00 1.85
777 786 4.583073 GTCTTGGCTCTTGGGTTCTTTTTA 59.417 41.667 0.00 0.00 0.00 1.52
778 787 3.384789 GTCTTGGCTCTTGGGTTCTTTTT 59.615 43.478 0.00 0.00 0.00 1.94
779 788 2.959030 GTCTTGGCTCTTGGGTTCTTTT 59.041 45.455 0.00 0.00 0.00 2.27
780 789 2.175715 AGTCTTGGCTCTTGGGTTCTTT 59.824 45.455 0.00 0.00 0.00 2.52
781 790 1.777272 AGTCTTGGCTCTTGGGTTCTT 59.223 47.619 0.00 0.00 0.00 2.52
782 791 1.439543 AGTCTTGGCTCTTGGGTTCT 58.560 50.000 0.00 0.00 0.00 3.01
783 792 2.615747 GGTAGTCTTGGCTCTTGGGTTC 60.616 54.545 0.00 0.00 0.00 3.62
784 793 1.351350 GGTAGTCTTGGCTCTTGGGTT 59.649 52.381 0.00 0.00 0.00 4.11
785 794 0.984995 GGTAGTCTTGGCTCTTGGGT 59.015 55.000 0.00 0.00 0.00 4.51
786 795 1.280457 AGGTAGTCTTGGCTCTTGGG 58.720 55.000 0.00 0.00 0.00 4.12
787 796 2.159028 GCTAGGTAGTCTTGGCTCTTGG 60.159 54.545 0.00 0.00 0.00 3.61
788 797 2.497675 TGCTAGGTAGTCTTGGCTCTTG 59.502 50.000 0.00 0.00 0.00 3.02
789 798 2.821437 TGCTAGGTAGTCTTGGCTCTT 58.179 47.619 0.00 0.00 0.00 2.85
790 799 2.534042 TGCTAGGTAGTCTTGGCTCT 57.466 50.000 0.00 0.00 0.00 4.09
791 800 3.006003 GGTATGCTAGGTAGTCTTGGCTC 59.994 52.174 0.00 0.00 0.00 4.70
792 801 2.966516 GGTATGCTAGGTAGTCTTGGCT 59.033 50.000 0.00 0.00 0.00 4.75
793 802 2.288273 CGGTATGCTAGGTAGTCTTGGC 60.288 54.545 0.00 0.00 0.00 4.52
924 941 2.485479 GCGTGAGAATACCATGGGATGT 60.485 50.000 11.24 0.00 0.00 3.06
933 950 0.179181 TCGTCGTGCGTGAGAATACC 60.179 55.000 0.00 0.00 42.13 2.73
940 957 3.281395 TGTCCTCGTCGTGCGTGA 61.281 61.111 0.00 1.34 42.13 4.35
1120 1153 4.954970 CAGGGTTGTGCCAGCGGT 62.955 66.667 0.00 0.00 39.65 5.68
1128 1161 3.052082 CTGGCGCTCAGGGTTGTG 61.052 66.667 7.64 0.00 39.76 3.33
1806 1908 3.735029 GACCAGAGGTCGACGCGT 61.735 66.667 13.85 13.85 43.14 6.01
2222 2361 2.202932 CCTCGGTCAAGGCGATGG 60.203 66.667 0.00 0.00 0.00 3.51
2223 2362 1.519455 GACCTCGGTCAAGGCGATG 60.519 63.158 11.12 0.00 44.02 3.84
2224 2363 1.258445 AAGACCTCGGTCAAGGCGAT 61.258 55.000 17.68 0.00 46.76 4.58
2225 2364 1.874345 GAAGACCTCGGTCAAGGCGA 61.874 60.000 17.68 0.00 46.76 5.54
2226 2365 1.446272 GAAGACCTCGGTCAAGGCG 60.446 63.158 17.68 0.00 46.76 5.52
2227 2366 1.446272 CGAAGACCTCGGTCAAGGC 60.446 63.158 17.68 3.75 46.76 4.35
2254 2568 0.585357 GAGTCGTCATGGATGCATGC 59.415 55.000 21.37 11.82 32.87 4.06
2277 2591 1.139853 GCTGGCTAGGCAGAATACACT 59.860 52.381 41.42 0.00 0.00 3.55
2287 2601 1.023513 CAGTTGACTGCTGGCTAGGC 61.024 60.000 9.85 9.85 37.15 3.93
2327 2642 4.142469 ACAACAACAACAACTGAAGGCTAC 60.142 41.667 0.00 0.00 0.00 3.58
2332 2647 7.060633 GTGTCTTTACAACAACAACAACTGAAG 59.939 37.037 0.00 0.00 37.36 3.02
2337 2652 5.571357 CCAGTGTCTTTACAACAACAACAAC 59.429 40.000 0.00 0.00 37.36 3.32
2340 2655 4.102649 GCCAGTGTCTTTACAACAACAAC 58.897 43.478 0.00 0.00 37.36 3.32
2343 2658 4.275936 AGATGCCAGTGTCTTTACAACAAC 59.724 41.667 0.00 0.00 37.36 3.32
2344 2659 4.460263 AGATGCCAGTGTCTTTACAACAA 58.540 39.130 0.00 0.00 37.36 2.83
2346 2661 5.932303 TCTAAGATGCCAGTGTCTTTACAAC 59.068 40.000 0.33 0.00 37.36 3.32
2354 2675 6.036517 CACTGTTAATCTAAGATGCCAGTGTC 59.963 42.308 15.34 0.00 42.06 3.67
2373 2694 2.159366 CCGATCGAAGCTAGACACTGTT 60.159 50.000 18.66 0.00 0.00 3.16
2383 2704 2.427453 ACTTGTATGTCCGATCGAAGCT 59.573 45.455 18.66 0.93 0.00 3.74
2414 2737 7.378461 CGAAATACTACACAGCAAACAACAAAT 59.622 33.333 0.00 0.00 0.00 2.32
2440 2763 4.041723 ACACAAAGACAAAAGCGTAATGC 58.958 39.130 0.00 0.00 46.98 3.56
2461 2784 2.084546 ACTGAAAGCCCGCTATGAAAC 58.915 47.619 0.00 0.00 37.60 2.78
2467 2790 1.080093 CGACACTGAAAGCCCGCTA 60.080 57.895 0.00 0.00 37.60 4.26
2468 2791 2.357517 CGACACTGAAAGCCCGCT 60.358 61.111 0.00 0.00 37.60 5.52
2470 2793 1.157870 ACAACGACACTGAAAGCCCG 61.158 55.000 0.00 0.00 37.60 6.13
2481 2804 4.395959 AAGGTACAGAGAAACAACGACA 57.604 40.909 0.00 0.00 0.00 4.35
2484 2807 5.270853 CCAAAAAGGTACAGAGAAACAACG 58.729 41.667 0.00 0.00 0.00 4.10
2519 2851 8.190326 ACGGATATATGAATGTCAAGTTAGGA 57.810 34.615 0.00 0.00 0.00 2.94
2587 2931 1.208706 TGAATTCGGATGGCCCTGTA 58.791 50.000 0.00 0.00 0.00 2.74
2590 2934 0.625849 ACTTGAATTCGGATGGCCCT 59.374 50.000 0.00 0.00 0.00 5.19
2597 2941 6.712998 TGTCAAATTTAGGACTTGAATTCGGA 59.287 34.615 9.35 0.00 35.11 4.55
2599 2943 7.485913 CCATGTCAAATTTAGGACTTGAATTCG 59.514 37.037 18.51 5.45 39.95 3.34
2600 2944 7.761249 CCCATGTCAAATTTAGGACTTGAATTC 59.239 37.037 18.51 0.00 39.95 2.17
2614 2958 4.151883 AGTGCAAGTACCCATGTCAAATT 58.848 39.130 0.00 0.00 0.00 1.82
2788 3263 6.160576 TGTGCATATGTATGAGCTTCTACA 57.839 37.500 4.29 10.61 35.75 2.74
2814 3289 1.555075 GTGGGTTCATAGAGGTGAGCA 59.445 52.381 0.00 0.00 31.77 4.26
2822 3297 0.682292 TGTGCACGTGGGTTCATAGA 59.318 50.000 18.88 0.00 0.00 1.98
2831 3306 0.321210 TAAGGGATGTGTGCACGTGG 60.321 55.000 18.88 0.00 0.00 4.94
2844 3319 2.727392 CGGGGCGTCACATAAGGGA 61.727 63.158 0.00 0.00 0.00 4.20
2847 3322 0.527817 GTCTCGGGGCGTCACATAAG 60.528 60.000 0.00 0.00 0.00 1.73
2849 3324 2.420568 GGTCTCGGGGCGTCACATA 61.421 63.158 0.00 0.00 0.00 2.29
2850 3325 3.771160 GGTCTCGGGGCGTCACAT 61.771 66.667 0.00 0.00 0.00 3.21
2995 3472 1.410004 ACGGACAACAGAAGAGGACA 58.590 50.000 0.00 0.00 0.00 4.02
3139 3616 1.243342 CCGATGAAACTTGGCAGGCA 61.243 55.000 0.00 0.00 0.00 4.75
3185 3663 5.299782 GGCTATACTGCCGCTATAGTTATCT 59.700 44.000 0.84 0.00 43.74 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.