Multiple sequence alignment - TraesCS2A01G501800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2A01G501800
chr2A
100.000
4004
0
0
1
4004
729837231
729833228
0.000000e+00
7395.0
1
TraesCS2A01G501800
chr2D
91.817
2432
108
41
703
3114
596196913
596194553
0.000000e+00
3304.0
2
TraesCS2A01G501800
chr2D
90.818
501
32
4
3517
4004
596193828
596193329
0.000000e+00
658.0
3
TraesCS2A01G501800
chr2D
82.178
202
33
3
428
628
596197136
596196937
1.910000e-38
171.0
4
TraesCS2A01G501800
chr2B
94.062
1701
79
12
667
2359
724750156
724748470
0.000000e+00
2562.0
5
TraesCS2A01G501800
chr2B
93.037
876
48
8
2344
3215
724748456
724747590
0.000000e+00
1267.0
6
TraesCS2A01G501800
chr2B
92.808
584
37
4
3419
4002
724741862
724741284
0.000000e+00
841.0
7
TraesCS2A01G501800
chr2B
93.833
454
21
5
227
679
724750562
724750115
0.000000e+00
676.0
8
TraesCS2A01G501800
chr2B
89.583
192
16
3
3204
3393
724742352
724742163
1.440000e-59
241.0
9
TraesCS2A01G501800
chr2B
84.959
246
24
3
1
233
724752727
724752482
1.860000e-58
237.0
10
TraesCS2A01G501800
chr1D
84.783
92
4
4
2050
2131
376984773
376984864
2.560000e-12
84.2
11
TraesCS2A01G501800
chr3B
84.043
94
5
5
2048
2131
766325329
766325422
9.220000e-12
82.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2A01G501800
chr2A
729833228
729837231
4003
True
7395.000000
7395
100.00000
1
4004
1
chr2A.!!$R1
4003
1
TraesCS2A01G501800
chr2D
596193329
596197136
3807
True
1377.666667
3304
88.27100
428
4004
3
chr2D.!!$R1
3576
2
TraesCS2A01G501800
chr2B
724747590
724752727
5137
True
1185.500000
2562
91.47275
1
3215
4
chr2B.!!$R2
3214
3
TraesCS2A01G501800
chr2B
724741284
724742352
1068
True
541.000000
841
91.19550
3204
4002
2
chr2B.!!$R1
798
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
951
2900
0.108804
AACATACACGACCCGCTCTG
60.109
55.0
0.00
0.0
0.0
3.35
F
1975
3928
0.309922
CGTACTACACCATCCGCGAT
59.690
55.0
8.23
0.0
0.0
4.58
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2324
4277
0.522180
TCGAGAAGAGAAGCGTGGAC
59.478
55.0
0.0
0.0
0.00
4.02
R
3801
6531
0.104304
ACGGAGAGAAGTTGTGCGTT
59.896
50.0
0.0
0.0
44.52
4.84
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
20
21
1.616865
TCATCGTCTTCTTTCCCACGT
59.383
47.619
0.00
0.00
33.89
4.49
29
30
3.053831
TCTTTCCCACGTTCTTGATCC
57.946
47.619
0.00
0.00
0.00
3.36
47
48
3.292159
GAACCACCCACAACCGCC
61.292
66.667
0.00
0.00
0.00
6.13
57
58
2.433491
CAACCGCCGACCGAATCA
60.433
61.111
0.00
0.00
40.02
2.57
66
67
1.901085
GACCGAATCACCTGCCTCT
59.099
57.895
0.00
0.00
0.00
3.69
68
69
1.194781
ACCGAATCACCTGCCTCTGT
61.195
55.000
0.00
0.00
0.00
3.41
120
132
3.120385
CGCTGCCATGCTTGTCGA
61.120
61.111
0.00
0.00
0.00
4.20
123
135
1.855213
GCTGCCATGCTTGTCGACAA
61.855
55.000
28.07
28.07
0.00
3.18
126
138
1.237285
GCCATGCTTGTCGACAACCT
61.237
55.000
26.53
13.38
0.00
3.50
128
140
1.511850
CATGCTTGTCGACAACCTCA
58.488
50.000
26.53
22.09
0.00
3.86
131
143
1.295792
GCTTGTCGACAACCTCAACA
58.704
50.000
26.53
4.45
0.00
3.33
132
144
1.873591
GCTTGTCGACAACCTCAACAT
59.126
47.619
26.53
0.00
0.00
2.71
133
145
2.096218
GCTTGTCGACAACCTCAACATC
60.096
50.000
26.53
0.00
0.00
3.06
134
146
1.778334
TGTCGACAACCTCAACATCG
58.222
50.000
17.62
0.00
0.00
3.84
135
147
1.067974
TGTCGACAACCTCAACATCGT
59.932
47.619
17.62
0.00
34.47
3.73
136
148
1.455786
GTCGACAACCTCAACATCGTG
59.544
52.381
11.55
0.00
34.47
4.35
184
197
1.515521
GAAGAACCTGCAACCCCACG
61.516
60.000
0.00
0.00
0.00
4.94
236
2176
1.059913
CCCCCTGCACCCTAAGATAG
58.940
60.000
0.00
0.00
0.00
2.08
246
2186
5.604231
TGCACCCTAAGATAGATGAAGTGAT
59.396
40.000
0.00
0.00
0.00
3.06
249
2189
6.426328
CACCCTAAGATAGATGAAGTGATTGC
59.574
42.308
0.00
0.00
0.00
3.56
259
2200
2.627699
TGAAGTGATTGCTTTTCCACCC
59.372
45.455
0.00
0.00
0.00
4.61
311
2252
0.888285
AGTGCACTGCTGCTTCCTTC
60.888
55.000
20.97
0.00
44.57
3.46
312
2253
0.888285
GTGCACTGCTGCTTCCTTCT
60.888
55.000
10.32
0.00
44.57
2.85
313
2254
0.604780
TGCACTGCTGCTTCCTTCTC
60.605
55.000
1.98
0.00
44.57
2.87
324
2265
2.093973
GCTTCCTTCTCCACTGAATCGA
60.094
50.000
0.00
0.00
0.00
3.59
337
2278
7.974675
TCCACTGAATCGACTAATTCAAATTC
58.025
34.615
1.24
0.00
43.22
2.17
379
2320
5.560183
CGTCCAGTAAAACTGTTGATCAACC
60.560
44.000
30.66
16.16
44.50
3.77
383
2324
4.755123
AGTAAAACTGTTGATCAACCGAGG
59.245
41.667
30.66
20.73
40.46
4.63
485
2426
5.182950
TCAATTCAGGCTTTCGCTATTTCAA
59.817
36.000
0.00
0.00
36.09
2.69
528
2470
7.174080
TCCAAATACACGATTCAAGAATGACAA
59.826
33.333
0.00
0.00
34.61
3.18
559
2501
4.276678
TCTGCTCTGAAAACCACATGAAAG
59.723
41.667
0.00
0.00
0.00
2.62
682
2624
5.977489
AAGAAAAACATGTAGGCTTACCC
57.023
39.130
0.00
0.00
36.11
3.69
684
2626
5.254115
AGAAAAACATGTAGGCTTACCCTC
58.746
41.667
0.00
0.00
44.96
4.30
685
2627
4.650972
AAAACATGTAGGCTTACCCTCA
57.349
40.909
0.00
0.00
44.96
3.86
686
2628
4.650972
AAACATGTAGGCTTACCCTCAA
57.349
40.909
0.00
0.00
44.96
3.02
687
2629
4.650972
AACATGTAGGCTTACCCTCAAA
57.349
40.909
0.00
0.00
44.96
2.69
688
2630
4.650972
ACATGTAGGCTTACCCTCAAAA
57.349
40.909
0.00
0.00
44.96
2.44
689
2631
4.993028
ACATGTAGGCTTACCCTCAAAAA
58.007
39.130
0.00
0.00
44.96
1.94
733
2675
4.256920
GCAGCCACACCCAGAATATATAG
58.743
47.826
0.00
0.00
0.00
1.31
740
2682
7.453393
CCACACCCAGAATATATAGTTCACAT
58.547
38.462
4.15
0.00
0.00
3.21
760
2702
1.838112
TATCTTTGCCACAAGCCAGG
58.162
50.000
0.00
0.00
42.71
4.45
818
2760
2.959516
TCCTCAGCAGACATACAAACG
58.040
47.619
0.00
0.00
0.00
3.60
845
2787
2.238942
TCAGAAGACGCAGCAAAAGA
57.761
45.000
0.00
0.00
0.00
2.52
910
2854
2.287547
CGCCTTTGCAACTAAGCTTTCA
60.288
45.455
3.20
0.00
37.32
2.69
916
2860
5.418310
TTGCAACTAAGCTTTCACTGTAC
57.582
39.130
3.20
0.00
34.99
2.90
951
2900
0.108804
AACATACACGACCCGCTCTG
60.109
55.000
0.00
0.00
0.00
3.35
957
2906
2.028190
CGACCCGCTCTGCATAGG
59.972
66.667
0.83
0.00
0.00
2.57
959
2908
4.227134
ACCCGCTCTGCATAGGCG
62.227
66.667
17.18
17.18
45.35
5.52
965
2914
1.144716
CTCTGCATAGGCGGCAAGA
59.855
57.895
13.08
5.03
46.35
3.02
967
2916
2.124736
TGCATAGGCGGCAAGACC
60.125
61.111
13.08
0.00
45.35
3.85
985
2934
1.610522
ACCTGCAGCAAACAGTTGATC
59.389
47.619
8.66
0.00
36.83
2.92
1261
3210
3.684990
AGCTCGCGCTCAACCTCA
61.685
61.111
5.56
0.00
45.15
3.86
1291
3240
1.812922
CTCCACGGTCAGCTCATGC
60.813
63.158
0.00
0.00
40.05
4.06
1292
3241
2.046988
CCACGGTCAGCTCATGCA
60.047
61.111
0.00
0.00
42.74
3.96
1293
3242
1.450848
CCACGGTCAGCTCATGCAT
60.451
57.895
0.00
0.00
42.74
3.96
1294
3243
1.712018
CCACGGTCAGCTCATGCATG
61.712
60.000
21.07
21.07
42.74
4.06
1353
3306
1.203065
GCTGCACTGCAAACTGAAAC
58.797
50.000
4.99
0.00
38.41
2.78
1363
3316
4.439057
TGCAAACTGAAACGAACTCTACT
58.561
39.130
0.00
0.00
0.00
2.57
1366
3319
5.220605
GCAAACTGAAACGAACTCTACTGTT
60.221
40.000
0.00
0.00
0.00
3.16
1370
3323
5.519206
ACTGAAACGAACTCTACTGTTGTTC
59.481
40.000
0.00
9.44
37.36
3.18
1475
3428
1.039068
CGATCTGGACAGGAGCATCT
58.961
55.000
0.00
0.00
33.73
2.90
1622
3575
3.134574
ACTGCTGGAACGGTAATCAAA
57.865
42.857
0.00
0.00
36.83
2.69
1627
3580
4.580995
TGCTGGAACGGTAATCAAAAGAAA
59.419
37.500
0.00
0.00
36.83
2.52
1653
3606
1.376037
TGTGCACAACGGACACACA
60.376
52.632
19.28
0.00
41.63
3.72
1975
3928
0.309922
CGTACTACACCATCCGCGAT
59.690
55.000
8.23
0.00
0.00
4.58
2329
4282
3.442996
CCTCAAGGTGATCGTCCAC
57.557
57.895
9.00
2.20
36.37
4.02
2366
4348
0.806102
TAACCGCGCTCATGCTCTTC
60.806
55.000
5.56
0.00
36.97
2.87
2370
4352
1.790387
GCGCTCATGCTCTTCGTTT
59.210
52.632
0.00
0.00
36.97
3.60
2374
4356
2.923655
CGCTCATGCTCTTCGTTTAAGA
59.076
45.455
0.00
0.00
42.07
2.10
2377
4359
4.784710
GCTCATGCTCTTCGTTTAAGATGC
60.785
45.833
0.00
0.00
43.32
3.91
2378
4360
4.252878
TCATGCTCTTCGTTTAAGATGCA
58.747
39.130
11.50
11.50
44.73
3.96
2383
4365
7.139896
TGCTCTTCGTTTAAGATGCATTTTA
57.860
32.000
0.00
2.52
43.32
1.52
2384
4366
7.243487
TGCTCTTCGTTTAAGATGCATTTTAG
58.757
34.615
9.39
0.25
43.32
1.85
2385
4367
7.119116
TGCTCTTCGTTTAAGATGCATTTTAGA
59.881
33.333
9.39
3.29
43.32
2.10
2387
4369
9.994432
CTCTTCGTTTAAGATGCATTTTAGAAT
57.006
29.630
9.39
0.00
43.32
2.40
2412
4401
1.115467
TTTGGTGGAACAATTGGCGT
58.885
45.000
10.83
0.00
44.16
5.68
2423
4412
0.958382
AATTGGCGTGCGTACACCAT
60.958
50.000
14.29
0.00
44.40
3.55
2430
4419
3.550992
GCGTACACCATGTCGCCG
61.551
66.667
11.96
3.89
39.31
6.46
2464
4453
2.273538
ATCCAGAATGAGCATCCAGC
57.726
50.000
0.00
0.00
39.69
4.85
2595
4584
5.319139
TCGTAAACTGACGAGATAAACGAG
58.681
41.667
0.00
0.00
46.43
4.18
2664
4653
1.378646
TGTTCGTGGCCACCAAACA
60.379
52.632
32.36
32.36
34.18
2.83
2665
4654
0.753479
TGTTCGTGGCCACCAAACAT
60.753
50.000
32.36
0.00
34.18
2.71
2910
4906
4.731503
CTGCTGCTGTTGCGCGTC
62.732
66.667
8.43
0.00
43.34
5.19
3037
5033
0.466922
AGCCATGGCCTTGACTATGC
60.467
55.000
33.14
13.41
43.17
3.14
3246
5245
1.775039
GCGCTGAGCTGTGTGAACAA
61.775
55.000
1.78
0.00
44.04
2.83
3247
5247
0.041839
CGCTGAGCTGTGTGAACAAC
60.042
55.000
1.78
0.00
0.00
3.32
3263
5263
4.082300
TGAACAACTGTTGTGCTTGTGATT
60.082
37.500
27.19
10.20
44.59
2.57
3270
5270
4.814147
TGTTGTGCTTGTGATTTGTGAAA
58.186
34.783
0.00
0.00
0.00
2.69
3312
5312
3.631686
AGTATGCGCAGATTATTTGGCAA
59.368
39.130
18.32
0.00
33.72
4.52
3330
5330
1.070843
CAACTTCTTGTGTGCCGTACG
60.071
52.381
8.69
8.69
0.00
3.67
3335
5335
1.358725
CTTGTGTGCCGTACGATGGG
61.359
60.000
18.76
0.06
0.00
4.00
3372
5372
0.859232
AGCAACTTCGTGTAGCGTTG
59.141
50.000
0.00
0.00
42.13
4.10
3384
5384
0.742990
TAGCGTTGCATACACCAGCC
60.743
55.000
0.00
0.00
0.00
4.85
3393
5393
1.003580
CATACACCAGCCAGTTCACCT
59.996
52.381
0.00
0.00
0.00
4.00
3425
5700
2.961062
AGTTGATTTGCAAAGGTGAGCT
59.039
40.909
18.19
7.79
38.44
4.09
3436
5711
4.171005
CAAAGGTGAGCTATGCATTTGTG
58.829
43.478
3.54
0.00
0.00
3.33
3448
5723
3.446799
TGCATTTGTGCTTCAACACTTC
58.553
40.909
1.86
0.00
41.30
3.01
3496
5772
3.932710
TCTGAATAATTGTGTGAGCGACC
59.067
43.478
0.00
0.00
0.00
4.79
3520
6237
6.293081
CCGAGGAACTGATGCACAAATAATAG
60.293
42.308
0.00
0.00
41.55
1.73
3573
6290
2.347490
GAAAGCTGGCCTCGGTGA
59.653
61.111
3.32
0.00
0.00
4.02
3590
6315
4.227527
TCGGTGATGGATAGATAGAGGCTA
59.772
45.833
0.00
0.00
0.00
3.93
3591
6316
4.336993
CGGTGATGGATAGATAGAGGCTAC
59.663
50.000
0.00
0.00
0.00
3.58
3652
6382
0.891373
CTTCACTTCAGCCTCTCGGA
59.109
55.000
0.00
0.00
0.00
4.55
3658
6388
4.200283
CAGCCTCTCGGAGTCGGC
62.200
72.222
23.85
23.85
42.79
5.54
3662
6392
4.180946
CTCTCGGAGTCGGCGGTG
62.181
72.222
7.21
0.00
36.95
4.94
3696
6426
2.760159
CGCCGGGCAATTCGTCATT
61.760
57.895
20.71
0.00
0.00
2.57
3789
6519
2.626785
TGCCCGATATCCCTTATTCCA
58.373
47.619
0.00
0.00
0.00
3.53
3801
6531
3.495983
CCCTTATTCCACCGTGCATATGA
60.496
47.826
6.97
0.00
0.00
2.15
3956
6686
2.589014
CAAGCCAAGAAGCGAAATGAC
58.411
47.619
0.00
0.00
38.01
3.06
3961
6691
3.070018
CCAAGAAGCGAAATGACTGACT
58.930
45.455
0.00
0.00
0.00
3.41
3971
6701
4.327357
CGAAATGACTGACTGATACACCAC
59.673
45.833
0.00
0.00
0.00
4.16
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
13
14
0.970640
TTCGGATCAAGAACGTGGGA
59.029
50.000
0.00
0.00
0.00
4.37
20
21
1.060729
TGGGTGGTTCGGATCAAGAA
58.939
50.000
0.00
0.00
0.00
2.52
29
30
3.656045
GCGGTTGTGGGTGGTTCG
61.656
66.667
0.00
0.00
0.00
3.95
47
48
1.519455
GAGGCAGGTGATTCGGTCG
60.519
63.158
0.00
0.00
0.00
4.79
52
53
1.086634
GCGACAGAGGCAGGTGATTC
61.087
60.000
0.00
0.00
0.00
2.52
117
129
1.778334
CACGATGTTGAGGTTGTCGA
58.222
50.000
0.00
0.00
36.28
4.20
120
132
2.831685
TAGCACGATGTTGAGGTTGT
57.168
45.000
0.00
0.00
0.00
3.32
123
135
2.423577
GGTTTAGCACGATGTTGAGGT
58.576
47.619
0.00
0.00
0.00
3.85
126
138
1.270412
ACCGGTTTAGCACGATGTTGA
60.270
47.619
0.00
0.00
0.00
3.18
128
140
1.153353
CACCGGTTTAGCACGATGTT
58.847
50.000
2.97
0.00
0.00
2.71
131
143
1.435577
GTTCACCGGTTTAGCACGAT
58.564
50.000
2.97
0.00
0.00
3.73
132
144
0.600782
GGTTCACCGGTTTAGCACGA
60.601
55.000
2.97
0.00
0.00
4.35
133
145
0.881159
TGGTTCACCGGTTTAGCACG
60.881
55.000
2.97
0.00
39.43
5.34
134
146
0.589708
GTGGTTCACCGGTTTAGCAC
59.410
55.000
24.09
24.09
39.43
4.40
135
147
0.535553
GGTGGTTCACCGGTTTAGCA
60.536
55.000
2.97
9.14
44.95
3.49
136
148
2.250646
GGTGGTTCACCGGTTTAGC
58.749
57.895
2.97
6.11
44.95
3.09
175
188
3.198953
TTAGGGGTGCGTGGGGTTG
62.199
63.158
0.00
0.00
0.00
3.77
184
197
2.772515
ACCTTGTCTATCTTAGGGGTGC
59.227
50.000
0.00
0.00
31.91
5.01
187
200
2.104963
GCCACCTTGTCTATCTTAGGGG
59.895
54.545
0.00
0.00
31.91
4.79
236
2176
4.488879
GGTGGAAAAGCAATCACTTCATC
58.511
43.478
0.00
0.00
0.00
2.92
246
2186
2.494530
GGTGCGGGTGGAAAAGCAA
61.495
57.895
0.00
0.00
41.56
3.91
249
2189
2.989253
GGGGTGCGGGTGGAAAAG
60.989
66.667
0.00
0.00
0.00
2.27
311
2252
6.968131
TTTGAATTAGTCGATTCAGTGGAG
57.032
37.500
0.00
0.00
44.33
3.86
312
2253
7.824289
AGAATTTGAATTAGTCGATTCAGTGGA
59.176
33.333
9.81
0.00
44.33
4.02
313
2254
7.978982
AGAATTTGAATTAGTCGATTCAGTGG
58.021
34.615
9.81
0.00
44.33
4.00
379
2320
6.040878
AGTAAACGGAATCTAATGTTCCTCG
58.959
40.000
3.69
0.00
42.36
4.63
383
2324
7.955864
GTGACAAGTAAACGGAATCTAATGTTC
59.044
37.037
0.00
0.00
0.00
3.18
416
2357
6.142818
ACGATTGAGAGAACTAGAGATTGG
57.857
41.667
0.00
0.00
0.00
3.16
426
2367
1.921230
GGCTTCGACGATTGAGAGAAC
59.079
52.381
0.00
0.00
0.00
3.01
485
2426
5.782893
TTTGGATTCGTCTTTCATTGGTT
57.217
34.783
0.00
0.00
0.00
3.67
498
2439
6.344572
TCTTGAATCGTGTATTTGGATTCG
57.655
37.500
8.06
0.00
45.61
3.34
528
2470
1.661463
TTTCAGAGCAGATGGGTCCT
58.339
50.000
0.00
0.00
45.21
3.85
593
2535
6.858993
GCGGCGTCAAAATTATATGGATTTTA
59.141
34.615
9.37
1.05
35.54
1.52
613
2555
2.664851
TTGTCACAAGAGGCGGCG
60.665
61.111
0.51
0.51
0.00
6.46
686
2628
5.184711
TCAAGCCTGCATGTTTTTCTTTTT
58.815
33.333
0.00
0.00
0.00
1.94
687
2629
4.768583
TCAAGCCTGCATGTTTTTCTTTT
58.231
34.783
0.00
0.00
0.00
2.27
688
2630
4.374399
CTCAAGCCTGCATGTTTTTCTTT
58.626
39.130
0.00
0.00
0.00
2.52
689
2631
3.243975
CCTCAAGCCTGCATGTTTTTCTT
60.244
43.478
0.00
0.00
0.00
2.52
690
2632
2.298163
CCTCAAGCCTGCATGTTTTTCT
59.702
45.455
0.00
0.00
0.00
2.52
691
2633
2.680577
CCTCAAGCCTGCATGTTTTTC
58.319
47.619
0.00
0.00
0.00
2.29
692
2634
1.270465
GCCTCAAGCCTGCATGTTTTT
60.270
47.619
0.00
0.00
34.35
1.94
693
2635
0.319405
GCCTCAAGCCTGCATGTTTT
59.681
50.000
0.00
0.00
34.35
2.43
694
2636
0.828762
TGCCTCAAGCCTGCATGTTT
60.829
50.000
0.00
0.00
42.71
2.83
695
2637
1.228644
TGCCTCAAGCCTGCATGTT
60.229
52.632
0.00
0.00
42.71
2.71
696
2638
1.677966
CTGCCTCAAGCCTGCATGT
60.678
57.895
0.00
0.00
42.71
3.21
697
2639
3.064987
GCTGCCTCAAGCCTGCATG
62.065
63.158
0.00
0.00
42.71
4.06
698
2640
2.754658
GCTGCCTCAAGCCTGCAT
60.755
61.111
0.00
0.00
42.71
3.96
733
2675
4.622740
GCTTGTGGCAAAGATAATGTGAAC
59.377
41.667
11.81
0.00
41.35
3.18
760
2702
8.655651
TGTGGTTAACTTTGGATTGAAATTTC
57.344
30.769
11.41
11.41
0.00
2.17
818
2760
2.602660
GCTGCGTCTTCTGATTTCTCTC
59.397
50.000
0.00
0.00
0.00
3.20
845
2787
1.228154
GCCCCCGTTTTCTCACTGT
60.228
57.895
0.00
0.00
0.00
3.55
904
2848
0.887387
TTGGGCGGTACAGTGAAAGC
60.887
55.000
0.00
0.00
0.00
3.51
910
2854
1.349688
TGATTCTTTGGGCGGTACAGT
59.650
47.619
0.00
0.00
0.00
3.55
916
2860
4.578516
TGTATGTTATGATTCTTTGGGCGG
59.421
41.667
0.00
0.00
0.00
6.13
951
2900
2.182842
CAGGTCTTGCCGCCTATGC
61.183
63.158
0.00
0.00
43.70
3.14
965
2914
1.610522
GATCAACTGTTTGCTGCAGGT
59.389
47.619
17.12
0.00
38.22
4.00
967
2916
1.400629
CCGATCAACTGTTTGCTGCAG
60.401
52.381
10.11
10.11
39.67
4.41
974
2923
2.641197
GGGCACCGATCAACTGTTT
58.359
52.632
0.00
0.00
40.86
2.83
1261
3210
1.211969
CGTGGAGGACGTTGTCGAT
59.788
57.895
0.00
0.00
43.50
3.59
1317
3270
3.061848
CCAAGACGGGCGCCAAAT
61.062
61.111
30.85
13.09
0.00
2.32
1340
3293
3.951979
AGAGTTCGTTTCAGTTTGCAG
57.048
42.857
0.00
0.00
0.00
4.41
1353
3306
4.750098
ACCAATGAACAACAGTAGAGTTCG
59.250
41.667
0.00
0.00
43.36
3.95
1363
3316
2.234661
TGCAACCAACCAATGAACAACA
59.765
40.909
0.00
0.00
0.00
3.33
1366
3319
1.411977
CCTGCAACCAACCAATGAACA
59.588
47.619
0.00
0.00
0.00
3.18
1370
3323
1.001181
CTTCCCTGCAACCAACCAATG
59.999
52.381
0.00
0.00
0.00
2.82
1622
3575
4.496341
CGTTGTGCACACAGAAGATTTCTT
60.496
41.667
21.56
0.00
42.94
2.52
1627
3580
1.202639
TCCGTTGTGCACACAGAAGAT
60.203
47.619
21.56
0.00
42.94
2.40
1653
3606
2.995939
CAGTTCAGATACACACACGCAT
59.004
45.455
0.00
0.00
0.00
4.73
2258
4211
2.361104
GTGCAGGAAATGGGCGGA
60.361
61.111
0.00
0.00
0.00
5.54
2324
4277
0.522180
TCGAGAAGAGAAGCGTGGAC
59.478
55.000
0.00
0.00
0.00
4.02
2326
4279
2.065993
TTTCGAGAAGAGAAGCGTGG
57.934
50.000
0.00
0.00
0.00
4.94
2327
4280
5.444745
GGTTAATTTCGAGAAGAGAAGCGTG
60.445
44.000
0.00
0.00
0.00
5.34
2329
4282
4.259451
CGGTTAATTTCGAGAAGAGAAGCG
60.259
45.833
10.44
10.44
0.00
4.68
2374
4356
8.732531
CCACCAAAAATGAATTCTAAAATGCAT
58.267
29.630
7.05
0.00
42.09
3.96
2378
4360
9.844257
TGTTCCACCAAAAATGAATTCTAAAAT
57.156
25.926
7.05
0.00
0.00
1.82
2383
4365
7.229106
CCAATTGTTCCACCAAAAATGAATTCT
59.771
33.333
7.05
0.00
0.00
2.40
2384
4366
7.361894
CCAATTGTTCCACCAAAAATGAATTC
58.638
34.615
4.43
0.00
0.00
2.17
2385
4367
6.238981
GCCAATTGTTCCACCAAAAATGAATT
60.239
34.615
4.43
0.00
0.00
2.17
2387
4369
4.578105
GCCAATTGTTCCACCAAAAATGAA
59.422
37.500
4.43
0.00
0.00
2.57
2396
4385
1.372872
GCACGCCAATTGTTCCACC
60.373
57.895
4.43
0.00
0.00
4.61
2412
4401
2.433491
GGCGACATGGTGTACGCA
60.433
61.111
19.95
0.00
43.42
5.24
2430
4419
2.231964
TCTGGATTGTTCAAGCAATGGC
59.768
45.455
3.35
0.00
38.98
4.40
2485
4474
3.800628
GCAGGTTTTGGCATGAGAC
57.199
52.632
0.00
0.00
0.00
3.36
2595
4584
2.100631
CGGTTGTCTCGGCCACATC
61.101
63.158
2.24
0.00
0.00
3.06
2641
4630
1.525077
GGTGGCCACGAACAGTTCA
60.525
57.895
29.08
0.00
0.00
3.18
2664
4653
1.938585
TTCCAGGTCGAAGAGGACAT
58.061
50.000
0.86
0.00
36.95
3.06
2665
4654
1.712056
TTTCCAGGTCGAAGAGGACA
58.288
50.000
0.86
0.00
36.95
4.02
2736
4732
4.438346
GTGAACACCTGCACGAGT
57.562
55.556
0.00
0.00
0.00
4.18
2982
4978
1.815421
CTCGTCCTTGGGAATGCGG
60.815
63.158
0.00
0.00
31.38
5.69
3037
5033
8.815141
AGTAGTAGTAGTAGTACATCACATCG
57.185
38.462
20.04
0.00
37.48
3.84
3081
5079
0.526211
AACATCTCTGCACGCTACGA
59.474
50.000
0.00
0.00
0.00
3.43
3133
5132
2.930019
CCACTGCAGGGACCTCCA
60.930
66.667
20.22
0.00
38.24
3.86
3134
5133
4.416738
GCCACTGCAGGGACCTCC
62.417
72.222
20.22
0.00
37.47
4.30
3135
5134
3.640407
TGCCACTGCAGGGACCTC
61.640
66.667
20.22
3.98
44.23
3.85
3246
5245
3.443329
TCACAAATCACAAGCACAACAGT
59.557
39.130
0.00
0.00
0.00
3.55
3247
5247
4.031418
TCACAAATCACAAGCACAACAG
57.969
40.909
0.00
0.00
0.00
3.16
3296
5296
4.361451
AGAAGTTGCCAAATAATCTGCG
57.639
40.909
0.00
0.00
0.00
5.18
3312
5312
0.386476
TCGTACGGCACACAAGAAGT
59.614
50.000
16.52
0.00
0.00
3.01
3330
5330
5.643379
TTCTAGAACAAACAATGCCCATC
57.357
39.130
0.00
0.00
0.00
3.51
3335
5335
5.979517
AGTTGCTTTCTAGAACAAACAATGC
59.020
36.000
18.96
7.64
0.00
3.56
3372
5372
0.804989
GTGAACTGGCTGGTGTATGC
59.195
55.000
0.00
0.00
0.00
3.14
3401
5662
4.685924
CTCACCTTTGCAAATCAACTTGT
58.314
39.130
13.23
0.00
33.73
3.16
3403
5664
3.385755
AGCTCACCTTTGCAAATCAACTT
59.614
39.130
13.23
0.00
33.73
2.66
3436
5711
0.110464
GAGCTGCGAAGTGTTGAAGC
60.110
55.000
0.00
0.00
0.00
3.86
3448
5723
1.706301
CACACATCTTCGAGCTGCG
59.294
57.895
0.00
0.00
42.69
5.18
3496
5772
4.944962
TTATTTGTGCATCAGTTCCTCG
57.055
40.909
0.00
0.00
0.00
4.63
3520
6237
0.404426
ACACCCCCACTTAAAGGAGC
59.596
55.000
0.00
0.00
0.00
4.70
3573
6290
3.951037
CGCAGTAGCCTCTATCTATCCAT
59.049
47.826
0.00
0.00
37.52
3.41
3590
6315
1.968017
CACAGCCAACCATCGCAGT
60.968
57.895
0.00
0.00
0.00
4.40
3591
6316
1.642037
CTCACAGCCAACCATCGCAG
61.642
60.000
0.00
0.00
0.00
5.18
3662
6392
2.125269
CGTCCATGTCCGGTTCCC
60.125
66.667
0.00
0.00
0.00
3.97
3789
6519
4.608032
TGCGTTCATATGCACGGT
57.392
50.000
25.40
0.00
41.26
4.83
3801
6531
0.104304
ACGGAGAGAAGTTGTGCGTT
59.896
50.000
0.00
0.00
44.52
4.84
3956
6686
1.406069
GGCTGGTGGTGTATCAGTCAG
60.406
57.143
0.00
0.00
41.88
3.51
3961
6691
0.904649
CTCAGGCTGGTGGTGTATCA
59.095
55.000
15.73
0.00
0.00
2.15
3971
6701
2.834549
TCCTCTTTACTTCTCAGGCTGG
59.165
50.000
15.73
5.63
0.00
4.85
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.