Multiple sequence alignment - TraesCS2A01G501700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G501700 | chr2A | 100.000 | 2287 | 0 | 0 | 1 | 2287 | 729834558 | 729832272 | 0.000000e+00 | 4224.0 |
1 | TraesCS2A01G501700 | chr2B | 91.607 | 703 | 47 | 7 | 746 | 1443 | 724741862 | 724741167 | 0.000000e+00 | 961.0 |
2 | TraesCS2A01G501700 | chr2B | 95.229 | 545 | 15 | 6 | 1 | 542 | 724748126 | 724747590 | 0.000000e+00 | 852.0 |
3 | TraesCS2A01G501700 | chr2B | 85.986 | 578 | 32 | 20 | 1547 | 2083 | 724741168 | 724740599 | 7.090000e-160 | 573.0 |
4 | TraesCS2A01G501700 | chr2B | 89.583 | 192 | 16 | 3 | 531 | 720 | 724742352 | 724742163 | 8.160000e-60 | 241.0 |
5 | TraesCS2A01G501700 | chr2B | 98.148 | 108 | 2 | 0 | 1441 | 1548 | 248157800 | 248157907 | 3.000000e-44 | 189.0 |
6 | TraesCS2A01G501700 | chr2B | 93.333 | 120 | 6 | 2 | 1429 | 1548 | 662882131 | 662882248 | 2.330000e-40 | 176.0 |
7 | TraesCS2A01G501700 | chr2D | 90.805 | 609 | 37 | 6 | 844 | 1434 | 596193828 | 596193221 | 0.000000e+00 | 797.0 |
8 | TraesCS2A01G501700 | chr2D | 90.444 | 450 | 20 | 9 | 1 | 441 | 596194988 | 596194553 | 2.550000e-159 | 571.0 |
9 | TraesCS2A01G501700 | chr2D | 95.745 | 188 | 4 | 1 | 1547 | 1734 | 596193215 | 596193032 | 1.330000e-77 | 300.0 |
10 | TraesCS2A01G501700 | chr2D | 95.205 | 146 | 6 | 1 | 1847 | 1992 | 596192595 | 596192451 | 1.770000e-56 | 230.0 |
11 | TraesCS2A01G501700 | chr2D | 92.623 | 122 | 5 | 1 | 1732 | 1849 | 596192746 | 596192625 | 3.020000e-39 | 172.0 |
12 | TraesCS2A01G501700 | chr2D | 92.708 | 96 | 7 | 0 | 1988 | 2083 | 596187397 | 596187302 | 3.060000e-29 | 139.0 |
13 | TraesCS2A01G501700 | chr1B | 98.165 | 109 | 2 | 0 | 1442 | 1550 | 250409544 | 250409436 | 8.340000e-45 | 191.0 |
14 | TraesCS2A01G501700 | chr7A | 94.958 | 119 | 4 | 2 | 1435 | 1552 | 192671849 | 192671966 | 3.880000e-43 | 185.0 |
15 | TraesCS2A01G501700 | chr7A | 93.333 | 120 | 7 | 1 | 1430 | 1549 | 252185549 | 252185431 | 2.330000e-40 | 176.0 |
16 | TraesCS2A01G501700 | chr7A | 79.699 | 133 | 24 | 3 | 2077 | 2207 | 573448916 | 573449047 | 2.420000e-15 | 93.5 |
17 | TraesCS2A01G501700 | chr6A | 97.248 | 109 | 3 | 0 | 1440 | 1548 | 436115579 | 436115471 | 3.880000e-43 | 185.0 |
18 | TraesCS2A01G501700 | chr7D | 94.118 | 119 | 5 | 1 | 1436 | 1552 | 555213327 | 555213445 | 1.810000e-41 | 180.0 |
19 | TraesCS2A01G501700 | chr7D | 83.951 | 81 | 13 | 0 | 2085 | 2165 | 99899135 | 99899215 | 6.770000e-11 | 78.7 |
20 | TraesCS2A01G501700 | chr3B | 94.783 | 115 | 6 | 0 | 1442 | 1556 | 214560264 | 214560150 | 1.810000e-41 | 180.0 |
21 | TraesCS2A01G501700 | chr5D | 95.455 | 110 | 5 | 0 | 1442 | 1551 | 544700491 | 544700382 | 2.330000e-40 | 176.0 |
22 | TraesCS2A01G501700 | chr5D | 77.540 | 187 | 37 | 5 | 2082 | 2265 | 524334264 | 524334080 | 8.640000e-20 | 108.0 |
23 | TraesCS2A01G501700 | chr5A | 80.423 | 189 | 30 | 6 | 2080 | 2265 | 509905841 | 509905657 | 1.100000e-28 | 137.0 |
24 | TraesCS2A01G501700 | chr5B | 77.692 | 130 | 25 | 4 | 2079 | 2207 | 596512462 | 596512336 | 2.440000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G501700 | chr2A | 729832272 | 729834558 | 2286 | True | 4224.000000 | 4224 | 100.000000 | 1 | 2287 | 1 | chr2A.!!$R1 | 2286 |
1 | TraesCS2A01G501700 | chr2B | 724747590 | 724748126 | 536 | True | 852.000000 | 852 | 95.229000 | 1 | 542 | 1 | chr2B.!!$R1 | 541 |
2 | TraesCS2A01G501700 | chr2B | 724740599 | 724742352 | 1753 | True | 591.666667 | 961 | 89.058667 | 531 | 2083 | 3 | chr2B.!!$R2 | 1552 |
3 | TraesCS2A01G501700 | chr2D | 596192451 | 596194988 | 2537 | True | 414.000000 | 797 | 92.964400 | 1 | 1992 | 5 | chr2D.!!$R2 | 1991 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
574 | 586 | 0.041839 | CGCTGAGCTGTGTGAACAAC | 60.042 | 55.0 | 1.78 | 0.0 | 0.0 | 3.32 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1438 | 2185 | 0.03918 | TCCGAACAGAGGGAGTAGCA | 59.961 | 55.0 | 0.0 | 0.0 | 0.0 | 3.49 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
237 | 245 | 4.731503 | CTGCTGCTGTTGCGCGTC | 62.732 | 66.667 | 8.43 | 0.00 | 43.34 | 5.19 |
364 | 372 | 0.466922 | AGCCATGGCCTTGACTATGC | 60.467 | 55.000 | 33.14 | 13.41 | 43.17 | 3.14 |
573 | 584 | 1.775039 | GCGCTGAGCTGTGTGAACAA | 61.775 | 55.000 | 1.78 | 0.00 | 44.04 | 2.83 |
574 | 586 | 0.041839 | CGCTGAGCTGTGTGAACAAC | 60.042 | 55.000 | 1.78 | 0.00 | 0.00 | 3.32 |
590 | 602 | 4.082300 | TGAACAACTGTTGTGCTTGTGATT | 60.082 | 37.500 | 27.19 | 10.20 | 44.59 | 2.57 |
597 | 609 | 4.814147 | TGTTGTGCTTGTGATTTGTGAAA | 58.186 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
639 | 651 | 3.631686 | AGTATGCGCAGATTATTTGGCAA | 59.368 | 39.130 | 18.32 | 0.00 | 33.72 | 4.52 |
657 | 669 | 1.070843 | CAACTTCTTGTGTGCCGTACG | 60.071 | 52.381 | 8.69 | 8.69 | 0.00 | 3.67 |
662 | 674 | 1.358725 | CTTGTGTGCCGTACGATGGG | 61.359 | 60.000 | 18.76 | 0.06 | 0.00 | 4.00 |
699 | 711 | 0.859232 | AGCAACTTCGTGTAGCGTTG | 59.141 | 50.000 | 0.00 | 0.00 | 42.13 | 4.10 |
711 | 723 | 0.742990 | TAGCGTTGCATACACCAGCC | 60.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
720 | 732 | 1.003580 | CATACACCAGCCAGTTCACCT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
752 | 1039 | 2.961062 | AGTTGATTTGCAAAGGTGAGCT | 59.039 | 40.909 | 18.19 | 7.79 | 38.44 | 4.09 |
763 | 1050 | 4.171005 | CAAAGGTGAGCTATGCATTTGTG | 58.829 | 43.478 | 3.54 | 0.00 | 0.00 | 3.33 |
775 | 1062 | 3.446799 | TGCATTTGTGCTTCAACACTTC | 58.553 | 40.909 | 1.86 | 0.00 | 41.30 | 3.01 |
823 | 1111 | 3.932710 | TCTGAATAATTGTGTGAGCGACC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
900 | 1629 | 2.347490 | GAAAGCTGGCCTCGGTGA | 59.653 | 61.111 | 3.32 | 0.00 | 0.00 | 4.02 |
917 | 1654 | 4.227527 | TCGGTGATGGATAGATAGAGGCTA | 59.772 | 45.833 | 0.00 | 0.00 | 0.00 | 3.93 |
918 | 1655 | 4.336993 | CGGTGATGGATAGATAGAGGCTAC | 59.663 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
979 | 1721 | 0.891373 | CTTCACTTCAGCCTCTCGGA | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
985 | 1727 | 4.200283 | CAGCCTCTCGGAGTCGGC | 62.200 | 72.222 | 23.85 | 23.85 | 42.79 | 5.54 |
989 | 1731 | 4.180946 | CTCTCGGAGTCGGCGGTG | 62.181 | 72.222 | 7.21 | 0.00 | 36.95 | 4.94 |
1023 | 1765 | 2.760159 | CGCCGGGCAATTCGTCATT | 61.760 | 57.895 | 20.71 | 0.00 | 0.00 | 2.57 |
1116 | 1858 | 2.626785 | TGCCCGATATCCCTTATTCCA | 58.373 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
1128 | 1870 | 3.495983 | CCCTTATTCCACCGTGCATATGA | 60.496 | 47.826 | 6.97 | 0.00 | 0.00 | 2.15 |
1283 | 2025 | 2.589014 | CAAGCCAAGAAGCGAAATGAC | 58.411 | 47.619 | 0.00 | 0.00 | 38.01 | 3.06 |
1288 | 2030 | 3.070018 | CCAAGAAGCGAAATGACTGACT | 58.930 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1298 | 2040 | 4.327357 | CGAAATGACTGACTGATACACCAC | 59.673 | 45.833 | 0.00 | 0.00 | 0.00 | 4.16 |
1400 | 2147 | 4.021807 | TGCTGTTAATCCAGTCTACGTTCA | 60.022 | 41.667 | 0.00 | 0.00 | 34.84 | 3.18 |
1402 | 2149 | 5.581085 | GCTGTTAATCCAGTCTACGTTCAAT | 59.419 | 40.000 | 0.00 | 0.00 | 34.84 | 2.57 |
1435 | 2182 | 4.613437 | AGGAAATGGGCATTGTTCACTAT | 58.387 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
1436 | 2183 | 5.765510 | AGGAAATGGGCATTGTTCACTATA | 58.234 | 37.500 | 0.00 | 0.00 | 0.00 | 1.31 |
1437 | 2184 | 5.594317 | AGGAAATGGGCATTGTTCACTATAC | 59.406 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
1438 | 2185 | 5.594317 | GGAAATGGGCATTGTTCACTATACT | 59.406 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
1439 | 2186 | 6.455360 | AAATGGGCATTGTTCACTATACTG | 57.545 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
1440 | 2187 | 3.278574 | TGGGCATTGTTCACTATACTGC | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1441 | 2188 | 3.054434 | TGGGCATTGTTCACTATACTGCT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
1442 | 2189 | 4.163268 | TGGGCATTGTTCACTATACTGCTA | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
1443 | 2190 | 4.511826 | GGGCATTGTTCACTATACTGCTAC | 59.488 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
1444 | 2191 | 5.360591 | GGCATTGTTCACTATACTGCTACT | 58.639 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1445 | 2192 | 5.463724 | GGCATTGTTCACTATACTGCTACTC | 59.536 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1446 | 2193 | 5.463724 | GCATTGTTCACTATACTGCTACTCC | 59.536 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1447 | 2194 | 5.593679 | TTGTTCACTATACTGCTACTCCC | 57.406 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1448 | 2195 | 4.868268 | TGTTCACTATACTGCTACTCCCT | 58.132 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1449 | 2196 | 4.888239 | TGTTCACTATACTGCTACTCCCTC | 59.112 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1450 | 2197 | 5.134661 | GTTCACTATACTGCTACTCCCTCT | 58.865 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
1451 | 2198 | 4.720046 | TCACTATACTGCTACTCCCTCTG | 58.280 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
1452 | 2199 | 4.166337 | TCACTATACTGCTACTCCCTCTGT | 59.834 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
1453 | 2200 | 4.890581 | CACTATACTGCTACTCCCTCTGTT | 59.109 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
1454 | 2201 | 5.009210 | CACTATACTGCTACTCCCTCTGTTC | 59.991 | 48.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1455 | 2202 | 1.178276 | ACTGCTACTCCCTCTGTTCG | 58.822 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1456 | 2203 | 0.457851 | CTGCTACTCCCTCTGTTCGG | 59.542 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1457 | 2204 | 0.039180 | TGCTACTCCCTCTGTTCGGA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1458 | 2205 | 1.183549 | GCTACTCCCTCTGTTCGGAA | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1459 | 2206 | 1.757699 | GCTACTCCCTCTGTTCGGAAT | 59.242 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1460 | 2207 | 2.168728 | GCTACTCCCTCTGTTCGGAATT | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1461 | 2208 | 3.383825 | GCTACTCCCTCTGTTCGGAATTA | 59.616 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
1462 | 2209 | 3.889520 | ACTCCCTCTGTTCGGAATTAC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
1463 | 2210 | 3.442076 | ACTCCCTCTGTTCGGAATTACT | 58.558 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1464 | 2211 | 3.838903 | ACTCCCTCTGTTCGGAATTACTT | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1465 | 2212 | 4.184629 | CTCCCTCTGTTCGGAATTACTTG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
1466 | 2213 | 3.581332 | TCCCTCTGTTCGGAATTACTTGT | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1467 | 2214 | 3.933332 | CCCTCTGTTCGGAATTACTTGTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1468 | 2215 | 3.612860 | CCTCTGTTCGGAATTACTTGTCG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
1469 | 2216 | 2.991190 | TCTGTTCGGAATTACTTGTCGC | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
1470 | 2217 | 2.734606 | CTGTTCGGAATTACTTGTCGCA | 59.265 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
1471 | 2218 | 3.132160 | TGTTCGGAATTACTTGTCGCAA | 58.868 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
1472 | 2219 | 3.560481 | TGTTCGGAATTACTTGTCGCAAA | 59.440 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
1473 | 2220 | 4.035324 | TGTTCGGAATTACTTGTCGCAAAA | 59.965 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
1474 | 2221 | 4.815040 | TCGGAATTACTTGTCGCAAAAA | 57.185 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
1475 | 2222 | 5.365403 | TCGGAATTACTTGTCGCAAAAAT | 57.635 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
1476 | 2223 | 5.150683 | TCGGAATTACTTGTCGCAAAAATG | 58.849 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
1477 | 2224 | 4.323336 | CGGAATTACTTGTCGCAAAAATGG | 59.677 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1478 | 2225 | 5.465935 | GGAATTACTTGTCGCAAAAATGGA | 58.534 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1479 | 2226 | 6.099341 | GGAATTACTTGTCGCAAAAATGGAT | 58.901 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1480 | 2227 | 6.034898 | GGAATTACTTGTCGCAAAAATGGATG | 59.965 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
1481 | 2228 | 5.446143 | TTACTTGTCGCAAAAATGGATGT | 57.554 | 34.783 | 0.00 | 0.00 | 0.00 | 3.06 |
1482 | 2229 | 6.561737 | TTACTTGTCGCAAAAATGGATGTA | 57.438 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1483 | 2230 | 5.643379 | ACTTGTCGCAAAAATGGATGTAT | 57.357 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
1484 | 2231 | 5.640732 | ACTTGTCGCAAAAATGGATGTATC | 58.359 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1485 | 2232 | 5.415701 | ACTTGTCGCAAAAATGGATGTATCT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1486 | 2233 | 6.597672 | ACTTGTCGCAAAAATGGATGTATCTA | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
1487 | 2234 | 6.603237 | TGTCGCAAAAATGGATGTATCTAG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
1488 | 2235 | 6.345298 | TGTCGCAAAAATGGATGTATCTAGA | 58.655 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1489 | 2236 | 6.257849 | TGTCGCAAAAATGGATGTATCTAGAC | 59.742 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
1490 | 2237 | 5.462068 | TCGCAAAAATGGATGTATCTAGACG | 59.538 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1491 | 2238 | 5.234329 | CGCAAAAATGGATGTATCTAGACGT | 59.766 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1492 | 2239 | 6.419710 | CGCAAAAATGGATGTATCTAGACGTA | 59.580 | 38.462 | 0.00 | 0.00 | 0.00 | 3.57 |
1493 | 2240 | 7.042992 | CGCAAAAATGGATGTATCTAGACGTAA | 60.043 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1494 | 2241 | 8.774586 | GCAAAAATGGATGTATCTAGACGTAAT | 58.225 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1521 | 2268 | 9.967346 | TTAGTTCTAGATACATCCATTTTCGAG | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 4.04 |
1522 | 2269 | 8.239038 | AGTTCTAGATACATCCATTTTCGAGA | 57.761 | 34.615 | 0.00 | 0.00 | 0.00 | 4.04 |
1523 | 2270 | 8.138712 | AGTTCTAGATACATCCATTTTCGAGAC | 58.861 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
1524 | 2271 | 7.582667 | TCTAGATACATCCATTTTCGAGACA | 57.417 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1525 | 2272 | 8.007405 | TCTAGATACATCCATTTTCGAGACAA | 57.993 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1526 | 2273 | 8.138074 | TCTAGATACATCCATTTTCGAGACAAG | 58.862 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
1527 | 2274 | 6.644347 | AGATACATCCATTTTCGAGACAAGT | 58.356 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1528 | 2275 | 7.782049 | AGATACATCCATTTTCGAGACAAGTA | 58.218 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1529 | 2276 | 8.258007 | AGATACATCCATTTTCGAGACAAGTAA | 58.742 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1530 | 2277 | 8.964476 | ATACATCCATTTTCGAGACAAGTAAT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
1531 | 2278 | 7.687941 | ACATCCATTTTCGAGACAAGTAATT | 57.312 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1532 | 2279 | 7.752695 | ACATCCATTTTCGAGACAAGTAATTC | 58.247 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
1533 | 2280 | 6.737254 | TCCATTTTCGAGACAAGTAATTCC | 57.263 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1534 | 2281 | 6.234920 | TCCATTTTCGAGACAAGTAATTCCA | 58.765 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1535 | 2282 | 6.712998 | TCCATTTTCGAGACAAGTAATTCCAA | 59.287 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1536 | 2283 | 7.229707 | TCCATTTTCGAGACAAGTAATTCCAAA | 59.770 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
1537 | 2284 | 7.326063 | CCATTTTCGAGACAAGTAATTCCAAAC | 59.674 | 37.037 | 0.00 | 0.00 | 0.00 | 2.93 |
1538 | 2285 | 5.585500 | TTCGAGACAAGTAATTCCAAACG | 57.415 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
1539 | 2286 | 3.991773 | TCGAGACAAGTAATTCCAAACGG | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
1540 | 2287 | 3.991773 | CGAGACAAGTAATTCCAAACGGA | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
1541 | 2288 | 4.091509 | CGAGACAAGTAATTCCAAACGGAG | 59.908 | 45.833 | 0.00 | 0.00 | 32.88 | 4.63 |
1542 | 2289 | 4.324267 | AGACAAGTAATTCCAAACGGAGG | 58.676 | 43.478 | 0.00 | 0.00 | 32.88 | 4.30 |
1543 | 2290 | 3.418047 | ACAAGTAATTCCAAACGGAGGG | 58.582 | 45.455 | 0.00 | 0.00 | 32.88 | 4.30 |
1544 | 2291 | 3.073356 | ACAAGTAATTCCAAACGGAGGGA | 59.927 | 43.478 | 0.00 | 0.00 | 32.88 | 4.20 |
1545 | 2292 | 3.629142 | AGTAATTCCAAACGGAGGGAG | 57.371 | 47.619 | 0.00 | 0.00 | 34.02 | 4.30 |
1678 | 2427 | 1.618343 | TGAGTTCATGCGGTCAGAGAA | 59.382 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
1692 | 2441 | 3.817647 | GTCAGAGAATGCCAGTTTTCTGT | 59.182 | 43.478 | 11.34 | 0.00 | 45.68 | 3.41 |
1693 | 2442 | 4.997395 | GTCAGAGAATGCCAGTTTTCTGTA | 59.003 | 41.667 | 11.34 | 1.25 | 45.68 | 2.74 |
1694 | 2443 | 5.470098 | GTCAGAGAATGCCAGTTTTCTGTAA | 59.530 | 40.000 | 11.34 | 0.00 | 45.68 | 2.41 |
1695 | 2444 | 6.150140 | GTCAGAGAATGCCAGTTTTCTGTAAT | 59.850 | 38.462 | 11.34 | 0.00 | 45.68 | 1.89 |
1745 | 2782 | 3.279875 | GGATGATGCGTTCGGCCC | 61.280 | 66.667 | 0.00 | 0.00 | 42.61 | 5.80 |
1794 | 2839 | 0.538516 | GCCTCTCCTCTCCATCGCTA | 60.539 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1835 | 2884 | 2.375509 | TCCTCCTCGGTCTATGCTATGA | 59.624 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1843 | 2892 | 2.323959 | GTCTATGCTATGAGCGCTGAC | 58.676 | 52.381 | 18.48 | 9.04 | 46.26 | 3.51 |
1845 | 2894 | 1.000171 | CTATGCTATGAGCGCTGACCA | 60.000 | 52.381 | 18.48 | 7.34 | 46.26 | 4.02 |
1854 | 2935 | 1.300931 | GCGCTGACCAGAGTTGTGA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
1926 | 3007 | 2.555123 | CCGCAGCTTAAGGCAGAAA | 58.445 | 52.632 | 4.29 | 0.00 | 44.79 | 2.52 |
1937 | 3018 | 2.038837 | GGCAGAAACCGTACCTGGC | 61.039 | 63.158 | 6.83 | 6.83 | 44.20 | 4.85 |
1954 | 3035 | 1.115930 | GGCCGGATCCTCTTGCTCTA | 61.116 | 60.000 | 5.05 | 0.00 | 0.00 | 2.43 |
2002 | 3087 | 2.432456 | AGATGCAAACGAGCGCGA | 60.432 | 55.556 | 19.05 | 0.00 | 41.64 | 5.87 |
2003 | 3088 | 1.756375 | GAGATGCAAACGAGCGCGAT | 61.756 | 55.000 | 19.05 | 1.23 | 41.64 | 4.58 |
2026 | 3111 | 0.103937 | GGAGCCGAAGTGAGATCCAG | 59.896 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2059 | 3144 | 2.032528 | CTGGCCGGTGAGCAGAAA | 59.967 | 61.111 | 2.29 | 0.00 | 0.00 | 2.52 |
2072 | 3157 | 3.217242 | CAGAAAGTGCTACTGCCGT | 57.783 | 52.632 | 0.00 | 0.00 | 38.71 | 5.68 |
2074 | 3159 | 0.388649 | AGAAAGTGCTACTGCCGTCG | 60.389 | 55.000 | 0.00 | 0.00 | 38.71 | 5.12 |
2080 | 3165 | 3.528370 | CTACTGCCGTCGAGGGGG | 61.528 | 72.222 | 24.61 | 9.38 | 41.48 | 5.40 |
2097 | 3182 | 3.780804 | GGGGGCTAAATTTGGTGTTTT | 57.219 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
2098 | 3183 | 3.407698 | GGGGGCTAAATTTGGTGTTTTG | 58.592 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
2099 | 3184 | 3.071747 | GGGGGCTAAATTTGGTGTTTTGA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2100 | 3185 | 4.062293 | GGGGCTAAATTTGGTGTTTTGAC | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2101 | 3186 | 4.062293 | GGGCTAAATTTGGTGTTTTGACC | 58.938 | 43.478 | 0.00 | 0.00 | 33.51 | 4.02 |
2102 | 3187 | 4.062293 | GGCTAAATTTGGTGTTTTGACCC | 58.938 | 43.478 | 0.00 | 0.00 | 34.79 | 4.46 |
2103 | 3188 | 4.202315 | GGCTAAATTTGGTGTTTTGACCCT | 60.202 | 41.667 | 0.00 | 0.00 | 34.79 | 4.34 |
2104 | 3189 | 5.364778 | GCTAAATTTGGTGTTTTGACCCTT | 58.635 | 37.500 | 0.00 | 0.00 | 34.79 | 3.95 |
2105 | 3190 | 5.820423 | GCTAAATTTGGTGTTTTGACCCTTT | 59.180 | 36.000 | 0.00 | 0.00 | 34.79 | 3.11 |
2106 | 3191 | 6.317642 | GCTAAATTTGGTGTTTTGACCCTTTT | 59.682 | 34.615 | 0.00 | 0.00 | 34.79 | 2.27 |
2107 | 3192 | 7.496263 | GCTAAATTTGGTGTTTTGACCCTTTTA | 59.504 | 33.333 | 0.00 | 0.00 | 34.79 | 1.52 |
2108 | 3193 | 9.554395 | CTAAATTTGGTGTTTTGACCCTTTTAT | 57.446 | 29.630 | 0.00 | 0.00 | 34.79 | 1.40 |
2110 | 3195 | 9.907229 | AAATTTGGTGTTTTGACCCTTTTATAA | 57.093 | 25.926 | 0.00 | 0.00 | 34.79 | 0.98 |
2111 | 3196 | 9.907229 | AATTTGGTGTTTTGACCCTTTTATAAA | 57.093 | 25.926 | 0.00 | 0.00 | 34.79 | 1.40 |
2112 | 3197 | 9.907229 | ATTTGGTGTTTTGACCCTTTTATAAAA | 57.093 | 25.926 | 10.16 | 10.16 | 34.79 | 1.52 |
2113 | 3198 | 9.734984 | TTTGGTGTTTTGACCCTTTTATAAAAA | 57.265 | 25.926 | 11.62 | 0.00 | 34.79 | 1.94 |
2114 | 3199 | 9.907229 | TTGGTGTTTTGACCCTTTTATAAAAAT | 57.093 | 25.926 | 11.62 | 1.15 | 34.79 | 1.82 |
2115 | 3200 | 9.907229 | TGGTGTTTTGACCCTTTTATAAAAATT | 57.093 | 25.926 | 11.62 | 0.00 | 34.79 | 1.82 |
2134 | 3219 | 8.688747 | AAAAATTTAGCTAGATCTGATCCTGG | 57.311 | 34.615 | 13.83 | 6.00 | 0.00 | 4.45 |
2135 | 3220 | 7.385894 | AAATTTAGCTAGATCTGATCCTGGT | 57.614 | 36.000 | 13.83 | 13.80 | 0.00 | 4.00 |
2136 | 3221 | 7.385894 | AATTTAGCTAGATCTGATCCTGGTT | 57.614 | 36.000 | 13.83 | 5.60 | 0.00 | 3.67 |
2137 | 3222 | 5.798125 | TTAGCTAGATCTGATCCTGGTTG | 57.202 | 43.478 | 13.83 | 0.00 | 0.00 | 3.77 |
2138 | 3223 | 2.971330 | AGCTAGATCTGATCCTGGTTGG | 59.029 | 50.000 | 13.83 | 0.00 | 37.10 | 3.77 |
2167 | 3252 | 7.928307 | TTTTTCGAGATCTGATCATTTTCCT | 57.072 | 32.000 | 19.12 | 0.00 | 0.00 | 3.36 |
2169 | 3254 | 9.618890 | TTTTTCGAGATCTGATCATTTTCCTAT | 57.381 | 29.630 | 19.12 | 0.00 | 0.00 | 2.57 |
2170 | 3255 | 8.824159 | TTTCGAGATCTGATCATTTTCCTATC | 57.176 | 34.615 | 19.12 | 4.42 | 0.00 | 2.08 |
2171 | 3256 | 6.616017 | TCGAGATCTGATCATTTTCCTATCG | 58.384 | 40.000 | 19.12 | 14.80 | 0.00 | 2.92 |
2172 | 3257 | 6.207614 | TCGAGATCTGATCATTTTCCTATCGT | 59.792 | 38.462 | 19.12 | 0.00 | 0.00 | 3.73 |
2173 | 3258 | 6.526325 | CGAGATCTGATCATTTTCCTATCGTC | 59.474 | 42.308 | 19.12 | 3.13 | 0.00 | 4.20 |
2174 | 3259 | 7.295322 | AGATCTGATCATTTTCCTATCGTCA | 57.705 | 36.000 | 19.12 | 0.00 | 0.00 | 4.35 |
2175 | 3260 | 7.377398 | AGATCTGATCATTTTCCTATCGTCAG | 58.623 | 38.462 | 19.12 | 0.00 | 34.63 | 3.51 |
2176 | 3261 | 6.715347 | TCTGATCATTTTCCTATCGTCAGA | 57.285 | 37.500 | 0.00 | 0.00 | 38.67 | 3.27 |
2177 | 3262 | 6.743110 | TCTGATCATTTTCCTATCGTCAGAG | 58.257 | 40.000 | 0.00 | 0.00 | 36.78 | 3.35 |
2178 | 3263 | 6.322456 | TCTGATCATTTTCCTATCGTCAGAGT | 59.678 | 38.462 | 0.00 | 0.00 | 36.78 | 3.24 |
2179 | 3264 | 6.507900 | TGATCATTTTCCTATCGTCAGAGTC | 58.492 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2180 | 3265 | 6.322456 | TGATCATTTTCCTATCGTCAGAGTCT | 59.678 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
2181 | 3266 | 7.502561 | TGATCATTTTCCTATCGTCAGAGTCTA | 59.497 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2182 | 3267 | 7.825331 | TCATTTTCCTATCGTCAGAGTCTAT | 57.175 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2183 | 3268 | 7.652727 | TCATTTTCCTATCGTCAGAGTCTATG | 58.347 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
2184 | 3269 | 6.392625 | TTTTCCTATCGTCAGAGTCTATGG | 57.607 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2185 | 3270 | 3.413327 | TCCTATCGTCAGAGTCTATGGC | 58.587 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2186 | 3271 | 2.160615 | CCTATCGTCAGAGTCTATGGCG | 59.839 | 54.545 | 15.12 | 15.12 | 46.72 | 5.69 |
2187 | 3272 | 0.955178 | ATCGTCAGAGTCTATGGCGG | 59.045 | 55.000 | 20.30 | 3.44 | 45.46 | 6.13 |
2188 | 3273 | 0.393944 | TCGTCAGAGTCTATGGCGGT | 60.394 | 55.000 | 20.30 | 0.00 | 45.46 | 5.68 |
2189 | 3274 | 1.134310 | TCGTCAGAGTCTATGGCGGTA | 60.134 | 52.381 | 20.30 | 0.12 | 45.46 | 4.02 |
2190 | 3275 | 1.264557 | CGTCAGAGTCTATGGCGGTAG | 59.735 | 57.143 | 13.55 | 0.00 | 41.88 | 3.18 |
2191 | 3276 | 1.609555 | GTCAGAGTCTATGGCGGTAGG | 59.390 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
2192 | 3277 | 0.962489 | CAGAGTCTATGGCGGTAGGG | 59.038 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2193 | 3278 | 0.556747 | AGAGTCTATGGCGGTAGGGT | 59.443 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2194 | 3279 | 1.779092 | AGAGTCTATGGCGGTAGGGTA | 59.221 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
2195 | 3280 | 2.379226 | AGAGTCTATGGCGGTAGGGTAT | 59.621 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2196 | 3281 | 3.590630 | AGAGTCTATGGCGGTAGGGTATA | 59.409 | 47.826 | 0.00 | 0.00 | 0.00 | 1.47 |
2197 | 3282 | 4.043812 | AGAGTCTATGGCGGTAGGGTATAA | 59.956 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
2198 | 3283 | 4.085009 | AGTCTATGGCGGTAGGGTATAAC | 58.915 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
2199 | 3284 | 3.828451 | GTCTATGGCGGTAGGGTATAACA | 59.172 | 47.826 | 0.00 | 0.00 | 0.00 | 2.41 |
2200 | 3285 | 4.281688 | GTCTATGGCGGTAGGGTATAACAA | 59.718 | 45.833 | 0.00 | 0.00 | 0.00 | 2.83 |
2201 | 3286 | 5.046807 | GTCTATGGCGGTAGGGTATAACAAT | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2202 | 3287 | 3.756933 | TGGCGGTAGGGTATAACAATC | 57.243 | 47.619 | 0.00 | 0.00 | 0.00 | 2.67 |
2203 | 3288 | 3.311091 | TGGCGGTAGGGTATAACAATCT | 58.689 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
2204 | 3289 | 4.482030 | TGGCGGTAGGGTATAACAATCTA | 58.518 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2205 | 3290 | 4.281688 | TGGCGGTAGGGTATAACAATCTAC | 59.718 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
2206 | 3291 | 4.322273 | GGCGGTAGGGTATAACAATCTACC | 60.322 | 50.000 | 10.26 | 10.26 | 43.77 | 3.18 |
2208 | 3293 | 4.814147 | GGTAGGGTATAACAATCTACCGC | 58.186 | 47.826 | 6.11 | 0.00 | 40.06 | 5.68 |
2209 | 3294 | 4.525874 | GGTAGGGTATAACAATCTACCGCT | 59.474 | 45.833 | 6.11 | 0.00 | 40.06 | 5.52 |
2210 | 3295 | 5.711976 | GGTAGGGTATAACAATCTACCGCTA | 59.288 | 44.000 | 6.11 | 0.00 | 40.06 | 4.26 |
2211 | 3296 | 6.209391 | GGTAGGGTATAACAATCTACCGCTAA | 59.791 | 42.308 | 6.11 | 0.00 | 40.06 | 3.09 |
2212 | 3297 | 6.342338 | AGGGTATAACAATCTACCGCTAAG | 57.658 | 41.667 | 0.00 | 0.00 | 38.64 | 2.18 |
2213 | 3298 | 6.073314 | AGGGTATAACAATCTACCGCTAAGA | 58.927 | 40.000 | 0.00 | 0.00 | 38.64 | 2.10 |
2214 | 3299 | 6.724905 | AGGGTATAACAATCTACCGCTAAGAT | 59.275 | 38.462 | 0.00 | 0.00 | 38.64 | 2.40 |
2215 | 3300 | 7.034397 | GGGTATAACAATCTACCGCTAAGATC | 58.966 | 42.308 | 0.00 | 0.00 | 38.64 | 2.75 |
2216 | 3301 | 7.034397 | GGTATAACAATCTACCGCTAAGATCC | 58.966 | 42.308 | 0.00 | 0.00 | 32.48 | 3.36 |
2217 | 3302 | 6.919775 | ATAACAATCTACCGCTAAGATCCT | 57.080 | 37.500 | 0.00 | 0.00 | 32.48 | 3.24 |
2218 | 3303 | 5.615925 | AACAATCTACCGCTAAGATCCTT | 57.384 | 39.130 | 0.00 | 0.00 | 32.48 | 3.36 |
2219 | 3304 | 4.950050 | ACAATCTACCGCTAAGATCCTTG | 58.050 | 43.478 | 0.00 | 0.00 | 32.48 | 3.61 |
2220 | 3305 | 4.649674 | ACAATCTACCGCTAAGATCCTTGA | 59.350 | 41.667 | 0.00 | 0.00 | 32.48 | 3.02 |
2221 | 3306 | 5.128827 | ACAATCTACCGCTAAGATCCTTGAA | 59.871 | 40.000 | 0.00 | 0.00 | 32.48 | 2.69 |
2222 | 3307 | 4.920640 | TCTACCGCTAAGATCCTTGAAG | 57.079 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2223 | 3308 | 2.990066 | ACCGCTAAGATCCTTGAAGG | 57.010 | 50.000 | 4.45 | 4.45 | 36.46 | 3.46 |
2224 | 3309 | 2.188817 | ACCGCTAAGATCCTTGAAGGT | 58.811 | 47.619 | 11.60 | 0.00 | 36.53 | 3.50 |
2225 | 3310 | 2.572104 | ACCGCTAAGATCCTTGAAGGTT | 59.428 | 45.455 | 11.60 | 2.22 | 36.53 | 3.50 |
2226 | 3311 | 2.939103 | CCGCTAAGATCCTTGAAGGTTG | 59.061 | 50.000 | 11.60 | 0.00 | 36.53 | 3.77 |
2227 | 3312 | 2.939103 | CGCTAAGATCCTTGAAGGTTGG | 59.061 | 50.000 | 11.60 | 1.68 | 36.53 | 3.77 |
2228 | 3313 | 3.282885 | GCTAAGATCCTTGAAGGTTGGG | 58.717 | 50.000 | 11.60 | 0.00 | 36.53 | 4.12 |
2229 | 3314 | 3.054361 | GCTAAGATCCTTGAAGGTTGGGA | 60.054 | 47.826 | 11.60 | 0.00 | 36.53 | 4.37 |
2230 | 3315 | 4.385754 | GCTAAGATCCTTGAAGGTTGGGAT | 60.386 | 45.833 | 11.60 | 0.00 | 40.77 | 3.85 |
2231 | 3316 | 3.659183 | AGATCCTTGAAGGTTGGGATG | 57.341 | 47.619 | 11.60 | 0.00 | 38.52 | 3.51 |
2232 | 3317 | 2.027385 | GATCCTTGAAGGTTGGGATGC | 58.973 | 52.381 | 11.60 | 0.00 | 38.52 | 3.91 |
2233 | 3318 | 0.776810 | TCCTTGAAGGTTGGGATGCA | 59.223 | 50.000 | 11.60 | 0.00 | 36.53 | 3.96 |
2234 | 3319 | 0.890683 | CCTTGAAGGTTGGGATGCAC | 59.109 | 55.000 | 2.25 | 0.00 | 0.00 | 4.57 |
2235 | 3320 | 0.523072 | CTTGAAGGTTGGGATGCACG | 59.477 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2236 | 3321 | 1.523154 | TTGAAGGTTGGGATGCACGC | 61.523 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2237 | 3322 | 2.676471 | AAGGTTGGGATGCACGCC | 60.676 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
2238 | 3323 | 3.210012 | AAGGTTGGGATGCACGCCT | 62.210 | 57.895 | 7.32 | 0.00 | 0.00 | 5.52 |
2239 | 3324 | 1.847798 | AAGGTTGGGATGCACGCCTA | 61.848 | 55.000 | 7.32 | 0.00 | 0.00 | 3.93 |
2240 | 3325 | 2.112815 | GGTTGGGATGCACGCCTAC | 61.113 | 63.158 | 7.32 | 6.18 | 0.00 | 3.18 |
2241 | 3326 | 2.112815 | GTTGGGATGCACGCCTACC | 61.113 | 63.158 | 7.32 | 0.00 | 0.00 | 3.18 |
2242 | 3327 | 3.673956 | TTGGGATGCACGCCTACCG | 62.674 | 63.158 | 7.32 | 0.00 | 44.21 | 4.02 |
2244 | 3329 | 4.830765 | GGATGCACGCCTACCGCA | 62.831 | 66.667 | 0.00 | 0.00 | 41.76 | 5.69 |
2245 | 3330 | 2.817834 | GATGCACGCCTACCGCAA | 60.818 | 61.111 | 0.00 | 0.00 | 39.48 | 4.85 |
2246 | 3331 | 2.359354 | ATGCACGCCTACCGCAAA | 60.359 | 55.556 | 0.00 | 0.00 | 39.48 | 3.68 |
2247 | 3332 | 1.714899 | GATGCACGCCTACCGCAAAT | 61.715 | 55.000 | 0.00 | 0.00 | 39.48 | 2.32 |
2248 | 3333 | 0.462937 | ATGCACGCCTACCGCAAATA | 60.463 | 50.000 | 0.00 | 0.00 | 39.48 | 1.40 |
2249 | 3334 | 0.673956 | TGCACGCCTACCGCAAATAA | 60.674 | 50.000 | 0.00 | 0.00 | 41.76 | 1.40 |
2250 | 3335 | 0.661020 | GCACGCCTACCGCAAATAAT | 59.339 | 50.000 | 0.00 | 0.00 | 41.76 | 1.28 |
2251 | 3336 | 1.064952 | GCACGCCTACCGCAAATAATT | 59.935 | 47.619 | 0.00 | 0.00 | 41.76 | 1.40 |
2252 | 3337 | 2.478879 | GCACGCCTACCGCAAATAATTT | 60.479 | 45.455 | 0.00 | 0.00 | 41.76 | 1.82 |
2253 | 3338 | 3.765026 | CACGCCTACCGCAAATAATTTT | 58.235 | 40.909 | 0.00 | 0.00 | 41.76 | 1.82 |
2254 | 3339 | 4.170256 | CACGCCTACCGCAAATAATTTTT | 58.830 | 39.130 | 0.00 | 0.00 | 41.76 | 1.94 |
2255 | 3340 | 5.333513 | CACGCCTACCGCAAATAATTTTTA | 58.666 | 37.500 | 0.00 | 0.00 | 41.76 | 1.52 |
2256 | 3341 | 5.800941 | CACGCCTACCGCAAATAATTTTTAA | 59.199 | 36.000 | 0.00 | 0.00 | 41.76 | 1.52 |
2257 | 3342 | 6.020995 | CACGCCTACCGCAAATAATTTTTAAG | 60.021 | 38.462 | 0.00 | 0.00 | 41.76 | 1.85 |
2258 | 3343 | 6.031471 | CGCCTACCGCAAATAATTTTTAAGT | 58.969 | 36.000 | 0.00 | 0.00 | 37.30 | 2.24 |
2259 | 3344 | 7.148272 | ACGCCTACCGCAAATAATTTTTAAGTA | 60.148 | 33.333 | 0.00 | 0.00 | 41.76 | 2.24 |
2260 | 3345 | 7.858879 | CGCCTACCGCAAATAATTTTTAAGTAT | 59.141 | 33.333 | 0.00 | 0.00 | 37.30 | 2.12 |
2261 | 3346 | 9.177304 | GCCTACCGCAAATAATTTTTAAGTATC | 57.823 | 33.333 | 0.00 | 0.00 | 37.47 | 2.24 |
2279 | 3364 | 6.743575 | AGTATCAAATGCAGTTTCTGTACC | 57.256 | 37.500 | 0.00 | 0.00 | 33.43 | 3.34 |
2280 | 3365 | 5.648092 | AGTATCAAATGCAGTTTCTGTACCC | 59.352 | 40.000 | 0.00 | 0.00 | 33.43 | 3.69 |
2281 | 3366 | 3.826524 | TCAAATGCAGTTTCTGTACCCA | 58.173 | 40.909 | 0.00 | 0.00 | 33.43 | 4.51 |
2282 | 3367 | 3.568007 | TCAAATGCAGTTTCTGTACCCAC | 59.432 | 43.478 | 0.00 | 0.00 | 33.43 | 4.61 |
2283 | 3368 | 2.200373 | ATGCAGTTTCTGTACCCACC | 57.800 | 50.000 | 0.00 | 0.00 | 33.43 | 4.61 |
2284 | 3369 | 1.136828 | TGCAGTTTCTGTACCCACCT | 58.863 | 50.000 | 0.00 | 0.00 | 33.43 | 4.00 |
2285 | 3370 | 2.331166 | TGCAGTTTCTGTACCCACCTA | 58.669 | 47.619 | 0.00 | 0.00 | 33.43 | 3.08 |
2286 | 3371 | 2.301870 | TGCAGTTTCTGTACCCACCTAG | 59.698 | 50.000 | 0.00 | 0.00 | 33.43 | 3.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
63 | 71 | 4.438346 | GTGAACACCTGCACGAGT | 57.562 | 55.556 | 0.00 | 0.00 | 0.00 | 4.18 |
309 | 317 | 1.815421 | CTCGTCCTTGGGAATGCGG | 60.815 | 63.158 | 0.00 | 0.00 | 31.38 | 5.69 |
364 | 372 | 8.815141 | AGTAGTAGTAGTAGTACATCACATCG | 57.185 | 38.462 | 20.04 | 0.00 | 37.48 | 3.84 |
408 | 418 | 0.526211 | AACATCTCTGCACGCTACGA | 59.474 | 50.000 | 0.00 | 0.00 | 0.00 | 3.43 |
460 | 471 | 2.930019 | CCACTGCAGGGACCTCCA | 60.930 | 66.667 | 20.22 | 0.00 | 38.24 | 3.86 |
461 | 472 | 4.416738 | GCCACTGCAGGGACCTCC | 62.417 | 72.222 | 20.22 | 0.00 | 37.47 | 4.30 |
462 | 473 | 3.640407 | TGCCACTGCAGGGACCTC | 61.640 | 66.667 | 20.22 | 3.98 | 44.23 | 3.85 |
573 | 584 | 3.443329 | TCACAAATCACAAGCACAACAGT | 59.557 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
574 | 586 | 4.031418 | TCACAAATCACAAGCACAACAG | 57.969 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
623 | 635 | 4.361451 | AGAAGTTGCCAAATAATCTGCG | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 5.18 |
639 | 651 | 0.386476 | TCGTACGGCACACAAGAAGT | 59.614 | 50.000 | 16.52 | 0.00 | 0.00 | 3.01 |
657 | 669 | 5.643379 | TTCTAGAACAAACAATGCCCATC | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
662 | 674 | 5.979517 | AGTTGCTTTCTAGAACAAACAATGC | 59.020 | 36.000 | 18.96 | 7.64 | 0.00 | 3.56 |
699 | 711 | 0.804989 | GTGAACTGGCTGGTGTATGC | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.14 |
728 | 1001 | 4.685924 | CTCACCTTTGCAAATCAACTTGT | 58.314 | 39.130 | 13.23 | 0.00 | 33.73 | 3.16 |
730 | 1003 | 3.385755 | AGCTCACCTTTGCAAATCAACTT | 59.614 | 39.130 | 13.23 | 0.00 | 33.73 | 2.66 |
763 | 1050 | 0.110464 | GAGCTGCGAAGTGTTGAAGC | 60.110 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
775 | 1062 | 1.706301 | CACACATCTTCGAGCTGCG | 59.294 | 57.895 | 0.00 | 0.00 | 42.69 | 5.18 |
823 | 1111 | 4.944962 | TTATTTGTGCATCAGTTCCTCG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 4.63 |
900 | 1629 | 3.951037 | CGCAGTAGCCTCTATCTATCCAT | 59.049 | 47.826 | 0.00 | 0.00 | 37.52 | 3.41 |
917 | 1654 | 1.968017 | CACAGCCAACCATCGCAGT | 60.968 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
918 | 1655 | 1.642037 | CTCACAGCCAACCATCGCAG | 61.642 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
989 | 1731 | 2.125269 | CGTCCATGTCCGGTTCCC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
1116 | 1858 | 4.608032 | TGCGTTCATATGCACGGT | 57.392 | 50.000 | 25.40 | 0.00 | 41.26 | 4.83 |
1128 | 1870 | 0.104304 | ACGGAGAGAAGTTGTGCGTT | 59.896 | 50.000 | 0.00 | 0.00 | 44.52 | 4.84 |
1283 | 2025 | 1.406069 | GGCTGGTGGTGTATCAGTCAG | 60.406 | 57.143 | 0.00 | 0.00 | 41.88 | 3.51 |
1288 | 2030 | 0.904649 | CTCAGGCTGGTGGTGTATCA | 59.095 | 55.000 | 15.73 | 0.00 | 0.00 | 2.15 |
1298 | 2040 | 2.834549 | TCCTCTTTACTTCTCAGGCTGG | 59.165 | 50.000 | 15.73 | 5.63 | 0.00 | 4.85 |
1381 | 2123 | 5.231568 | CGGATTGAACGTAGACTGGATTAAC | 59.768 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1382 | 2124 | 5.105635 | ACGGATTGAACGTAGACTGGATTAA | 60.106 | 40.000 | 0.00 | 0.00 | 43.60 | 1.40 |
1400 | 2147 | 2.158755 | CCATTTCCTCTGGCTACGGATT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1402 | 2149 | 0.830648 | CCATTTCCTCTGGCTACGGA | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1435 | 2182 | 2.366533 | CGAACAGAGGGAGTAGCAGTA | 58.633 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
1436 | 2183 | 1.178276 | CGAACAGAGGGAGTAGCAGT | 58.822 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1437 | 2184 | 0.457851 | CCGAACAGAGGGAGTAGCAG | 59.542 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1438 | 2185 | 0.039180 | TCCGAACAGAGGGAGTAGCA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1439 | 2186 | 1.183549 | TTCCGAACAGAGGGAGTAGC | 58.816 | 55.000 | 0.00 | 0.00 | 33.01 | 3.58 |
1440 | 2187 | 4.645588 | AGTAATTCCGAACAGAGGGAGTAG | 59.354 | 45.833 | 0.00 | 0.00 | 33.01 | 2.57 |
1441 | 2188 | 4.607239 | AGTAATTCCGAACAGAGGGAGTA | 58.393 | 43.478 | 0.00 | 0.00 | 33.01 | 2.59 |
1442 | 2189 | 3.442076 | AGTAATTCCGAACAGAGGGAGT | 58.558 | 45.455 | 0.00 | 0.00 | 33.01 | 3.85 |
1443 | 2190 | 4.184629 | CAAGTAATTCCGAACAGAGGGAG | 58.815 | 47.826 | 0.00 | 0.00 | 33.01 | 4.30 |
1444 | 2191 | 3.581332 | ACAAGTAATTCCGAACAGAGGGA | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1445 | 2192 | 3.933332 | GACAAGTAATTCCGAACAGAGGG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1446 | 2193 | 3.612860 | CGACAAGTAATTCCGAACAGAGG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
1447 | 2194 | 3.060895 | GCGACAAGTAATTCCGAACAGAG | 59.939 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
1448 | 2195 | 2.991190 | GCGACAAGTAATTCCGAACAGA | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1449 | 2196 | 2.734606 | TGCGACAAGTAATTCCGAACAG | 59.265 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1450 | 2197 | 2.756829 | TGCGACAAGTAATTCCGAACA | 58.243 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1451 | 2198 | 3.799137 | TTGCGACAAGTAATTCCGAAC | 57.201 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
1452 | 2199 | 4.815040 | TTTTGCGACAAGTAATTCCGAA | 57.185 | 36.364 | 0.00 | 0.00 | 0.00 | 4.30 |
1453 | 2200 | 4.815040 | TTTTTGCGACAAGTAATTCCGA | 57.185 | 36.364 | 0.00 | 0.00 | 0.00 | 4.55 |
1454 | 2201 | 4.323336 | CCATTTTTGCGACAAGTAATTCCG | 59.677 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1455 | 2202 | 5.465935 | TCCATTTTTGCGACAAGTAATTCC | 58.534 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1456 | 2203 | 6.586082 | ACATCCATTTTTGCGACAAGTAATTC | 59.414 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
1457 | 2204 | 6.454795 | ACATCCATTTTTGCGACAAGTAATT | 58.545 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1458 | 2205 | 6.024552 | ACATCCATTTTTGCGACAAGTAAT | 57.975 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1459 | 2206 | 5.446143 | ACATCCATTTTTGCGACAAGTAA | 57.554 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
1460 | 2207 | 6.597672 | AGATACATCCATTTTTGCGACAAGTA | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1461 | 2208 | 5.415701 | AGATACATCCATTTTTGCGACAAGT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1462 | 2209 | 5.883661 | AGATACATCCATTTTTGCGACAAG | 58.116 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
1463 | 2210 | 5.895636 | AGATACATCCATTTTTGCGACAA | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
1464 | 2211 | 6.257849 | GTCTAGATACATCCATTTTTGCGACA | 59.742 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
1465 | 2212 | 6.562270 | CGTCTAGATACATCCATTTTTGCGAC | 60.562 | 42.308 | 0.00 | 0.00 | 0.00 | 5.19 |
1466 | 2213 | 5.462068 | CGTCTAGATACATCCATTTTTGCGA | 59.538 | 40.000 | 0.00 | 0.00 | 0.00 | 5.10 |
1467 | 2214 | 5.234329 | ACGTCTAGATACATCCATTTTTGCG | 59.766 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1468 | 2215 | 6.604735 | ACGTCTAGATACATCCATTTTTGC | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
1495 | 2242 | 9.967346 | CTCGAAAATGGATGTATCTAGAACTAA | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1496 | 2243 | 9.350951 | TCTCGAAAATGGATGTATCTAGAACTA | 57.649 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1497 | 2244 | 8.138712 | GTCTCGAAAATGGATGTATCTAGAACT | 58.861 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1498 | 2245 | 7.921214 | TGTCTCGAAAATGGATGTATCTAGAAC | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1499 | 2246 | 8.007405 | TGTCTCGAAAATGGATGTATCTAGAA | 57.993 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
1500 | 2247 | 7.582667 | TGTCTCGAAAATGGATGTATCTAGA | 57.417 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1501 | 2248 | 7.923344 | ACTTGTCTCGAAAATGGATGTATCTAG | 59.077 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
1502 | 2249 | 7.782049 | ACTTGTCTCGAAAATGGATGTATCTA | 58.218 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
1503 | 2250 | 6.644347 | ACTTGTCTCGAAAATGGATGTATCT | 58.356 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1504 | 2251 | 6.910536 | ACTTGTCTCGAAAATGGATGTATC | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1505 | 2252 | 8.964476 | ATTACTTGTCTCGAAAATGGATGTAT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1506 | 2253 | 8.786826 | AATTACTTGTCTCGAAAATGGATGTA | 57.213 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1507 | 2254 | 7.148239 | GGAATTACTTGTCTCGAAAATGGATGT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
1508 | 2255 | 7.148255 | TGGAATTACTTGTCTCGAAAATGGATG | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
1509 | 2256 | 6.884295 | TGGAATTACTTGTCTCGAAAATGGAT | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
1510 | 2257 | 6.234920 | TGGAATTACTTGTCTCGAAAATGGA | 58.765 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1511 | 2258 | 6.494893 | TGGAATTACTTGTCTCGAAAATGG | 57.505 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
1512 | 2259 | 7.059488 | CGTTTGGAATTACTTGTCTCGAAAATG | 59.941 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1513 | 2260 | 7.075741 | CGTTTGGAATTACTTGTCTCGAAAAT | 58.924 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1514 | 2261 | 6.423862 | CGTTTGGAATTACTTGTCTCGAAAA | 58.576 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1515 | 2262 | 5.049954 | CCGTTTGGAATTACTTGTCTCGAAA | 60.050 | 40.000 | 0.00 | 0.00 | 37.49 | 3.46 |
1516 | 2263 | 4.449743 | CCGTTTGGAATTACTTGTCTCGAA | 59.550 | 41.667 | 0.00 | 0.00 | 37.49 | 3.71 |
1517 | 2264 | 3.991773 | CCGTTTGGAATTACTTGTCTCGA | 59.008 | 43.478 | 0.00 | 0.00 | 37.49 | 4.04 |
1518 | 2265 | 3.991773 | TCCGTTTGGAATTACTTGTCTCG | 59.008 | 43.478 | 0.00 | 0.00 | 42.85 | 4.04 |
1519 | 2266 | 4.392138 | CCTCCGTTTGGAATTACTTGTCTC | 59.608 | 45.833 | 0.00 | 0.00 | 45.87 | 3.36 |
1520 | 2267 | 4.324267 | CCTCCGTTTGGAATTACTTGTCT | 58.676 | 43.478 | 0.00 | 0.00 | 45.87 | 3.41 |
1521 | 2268 | 3.439129 | CCCTCCGTTTGGAATTACTTGTC | 59.561 | 47.826 | 0.00 | 0.00 | 45.87 | 3.18 |
1522 | 2269 | 3.073356 | TCCCTCCGTTTGGAATTACTTGT | 59.927 | 43.478 | 0.00 | 0.00 | 45.87 | 3.16 |
1523 | 2270 | 3.681593 | TCCCTCCGTTTGGAATTACTTG | 58.318 | 45.455 | 0.00 | 0.00 | 45.87 | 3.16 |
1524 | 2271 | 3.329814 | ACTCCCTCCGTTTGGAATTACTT | 59.670 | 43.478 | 0.00 | 0.00 | 45.87 | 2.24 |
1525 | 2272 | 2.910977 | ACTCCCTCCGTTTGGAATTACT | 59.089 | 45.455 | 0.00 | 0.00 | 45.87 | 2.24 |
1526 | 2273 | 3.345508 | ACTCCCTCCGTTTGGAATTAC | 57.654 | 47.619 | 0.00 | 0.00 | 45.87 | 1.89 |
1527 | 2274 | 4.098894 | ACTACTCCCTCCGTTTGGAATTA | 58.901 | 43.478 | 0.00 | 0.00 | 45.87 | 1.40 |
1528 | 2275 | 2.910977 | ACTACTCCCTCCGTTTGGAATT | 59.089 | 45.455 | 0.00 | 0.00 | 45.87 | 2.17 |
1529 | 2276 | 2.547990 | ACTACTCCCTCCGTTTGGAAT | 58.452 | 47.619 | 0.00 | 0.00 | 45.87 | 3.01 |
1530 | 2277 | 2.019807 | ACTACTCCCTCCGTTTGGAA | 57.980 | 50.000 | 0.00 | 0.00 | 45.87 | 3.53 |
1531 | 2278 | 1.897802 | GAACTACTCCCTCCGTTTGGA | 59.102 | 52.381 | 0.00 | 0.00 | 43.88 | 3.53 |
1532 | 2279 | 1.900486 | AGAACTACTCCCTCCGTTTGG | 59.100 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
1533 | 2280 | 3.679824 | AAGAACTACTCCCTCCGTTTG | 57.320 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
1534 | 2281 | 4.386711 | CAAAAGAACTACTCCCTCCGTTT | 58.613 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
1535 | 2282 | 3.244457 | CCAAAAGAACTACTCCCTCCGTT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
1536 | 2283 | 2.302157 | CCAAAAGAACTACTCCCTCCGT | 59.698 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1537 | 2284 | 2.935676 | GCCAAAAGAACTACTCCCTCCG | 60.936 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
1538 | 2285 | 2.618302 | GGCCAAAAGAACTACTCCCTCC | 60.618 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
1539 | 2286 | 2.618302 | GGGCCAAAAGAACTACTCCCTC | 60.618 | 54.545 | 4.39 | 0.00 | 0.00 | 4.30 |
1540 | 2287 | 1.354705 | GGGCCAAAAGAACTACTCCCT | 59.645 | 52.381 | 4.39 | 0.00 | 0.00 | 4.20 |
1541 | 2288 | 1.354705 | AGGGCCAAAAGAACTACTCCC | 59.645 | 52.381 | 6.18 | 0.00 | 0.00 | 4.30 |
1542 | 2289 | 2.437413 | CAGGGCCAAAAGAACTACTCC | 58.563 | 52.381 | 6.18 | 0.00 | 0.00 | 3.85 |
1543 | 2290 | 1.813178 | GCAGGGCCAAAAGAACTACTC | 59.187 | 52.381 | 6.18 | 0.00 | 0.00 | 2.59 |
1544 | 2291 | 1.144913 | TGCAGGGCCAAAAGAACTACT | 59.855 | 47.619 | 6.18 | 0.00 | 0.00 | 2.57 |
1545 | 2292 | 1.269723 | GTGCAGGGCCAAAAGAACTAC | 59.730 | 52.381 | 6.18 | 0.00 | 0.00 | 2.73 |
1678 | 2427 | 7.653647 | TCGTTTTAATTACAGAAAACTGGCAT | 58.346 | 30.769 | 10.85 | 0.00 | 41.36 | 4.40 |
1695 | 2444 | 9.632807 | CTCAATCAATTACCCAATTCGTTTTAA | 57.367 | 29.630 | 0.00 | 0.00 | 31.82 | 1.52 |
1745 | 2782 | 3.891400 | CCCGATGCATGCGTTGGG | 61.891 | 66.667 | 39.35 | 39.35 | 46.84 | 4.12 |
1835 | 2884 | 1.301244 | CACAACTCTGGTCAGCGCT | 60.301 | 57.895 | 2.64 | 2.64 | 0.00 | 5.92 |
1843 | 2892 | 1.270550 | GGTGGCAAATCACAACTCTGG | 59.729 | 52.381 | 0.00 | 0.00 | 39.27 | 3.86 |
1845 | 2894 | 1.202758 | TCGGTGGCAAATCACAACTCT | 60.203 | 47.619 | 0.00 | 0.00 | 39.27 | 3.24 |
1854 | 2935 | 1.674322 | CGGGAGTTCGGTGGCAAAT | 60.674 | 57.895 | 0.00 | 0.00 | 0.00 | 2.32 |
1915 | 2996 | 2.289819 | CCAGGTACGGTTTCTGCCTTAA | 60.290 | 50.000 | 5.30 | 0.00 | 0.00 | 1.85 |
1937 | 3018 | 0.312416 | CGTAGAGCAAGAGGATCCGG | 59.688 | 60.000 | 5.98 | 0.00 | 33.66 | 5.14 |
2002 | 3087 | 1.489481 | TCTCACTTCGGCTCCATCAT | 58.511 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2003 | 3088 | 1.410517 | GATCTCACTTCGGCTCCATCA | 59.589 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
2026 | 3111 | 4.643387 | AGCCCACCACCGTTGCTC | 62.643 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2059 | 3144 | 2.701780 | CCTCGACGGCAGTAGCACT | 61.702 | 63.158 | 0.00 | 0.00 | 44.61 | 4.40 |
2080 | 3165 | 4.062293 | GGGTCAAAACACCAAATTTAGCC | 58.938 | 43.478 | 0.00 | 0.00 | 38.32 | 3.93 |
2084 | 3169 | 9.907229 | TTATAAAAGGGTCAAAACACCAAATTT | 57.093 | 25.926 | 0.00 | 0.00 | 38.32 | 1.82 |
2085 | 3170 | 9.907229 | TTTATAAAAGGGTCAAAACACCAAATT | 57.093 | 25.926 | 0.00 | 0.00 | 38.32 | 1.82 |
2086 | 3171 | 9.907229 | TTTTATAAAAGGGTCAAAACACCAAAT | 57.093 | 25.926 | 6.54 | 0.00 | 38.32 | 2.32 |
2087 | 3172 | 9.734984 | TTTTTATAAAAGGGTCAAAACACCAAA | 57.265 | 25.926 | 10.40 | 0.00 | 38.32 | 3.28 |
2088 | 3173 | 9.907229 | ATTTTTATAAAAGGGTCAAAACACCAA | 57.093 | 25.926 | 10.40 | 0.00 | 38.32 | 3.67 |
2089 | 3174 | 9.907229 | AATTTTTATAAAAGGGTCAAAACACCA | 57.093 | 25.926 | 10.40 | 0.00 | 38.32 | 4.17 |
2108 | 3193 | 9.784531 | CCAGGATCAGATCTAGCTAAATTTTTA | 57.215 | 33.333 | 10.36 | 0.00 | 0.00 | 1.52 |
2109 | 3194 | 8.277918 | ACCAGGATCAGATCTAGCTAAATTTTT | 58.722 | 33.333 | 10.36 | 0.00 | 0.00 | 1.94 |
2110 | 3195 | 7.810260 | ACCAGGATCAGATCTAGCTAAATTTT | 58.190 | 34.615 | 10.36 | 0.00 | 0.00 | 1.82 |
2111 | 3196 | 7.385894 | ACCAGGATCAGATCTAGCTAAATTT | 57.614 | 36.000 | 10.36 | 0.00 | 0.00 | 1.82 |
2112 | 3197 | 7.222872 | CAACCAGGATCAGATCTAGCTAAATT | 58.777 | 38.462 | 10.36 | 0.00 | 0.00 | 1.82 |
2113 | 3198 | 6.239829 | CCAACCAGGATCAGATCTAGCTAAAT | 60.240 | 42.308 | 10.36 | 0.00 | 41.22 | 1.40 |
2114 | 3199 | 5.070981 | CCAACCAGGATCAGATCTAGCTAAA | 59.929 | 44.000 | 10.36 | 0.00 | 41.22 | 1.85 |
2115 | 3200 | 4.590647 | CCAACCAGGATCAGATCTAGCTAA | 59.409 | 45.833 | 10.36 | 0.00 | 41.22 | 3.09 |
2116 | 3201 | 4.140924 | TCCAACCAGGATCAGATCTAGCTA | 60.141 | 45.833 | 10.36 | 0.00 | 43.07 | 3.32 |
2117 | 3202 | 2.971330 | CCAACCAGGATCAGATCTAGCT | 59.029 | 50.000 | 10.36 | 0.00 | 41.22 | 3.32 |
2118 | 3203 | 2.968574 | TCCAACCAGGATCAGATCTAGC | 59.031 | 50.000 | 10.36 | 0.00 | 43.07 | 3.42 |
2143 | 3228 | 7.928307 | AGGAAAATGATCAGATCTCGAAAAA | 57.072 | 32.000 | 11.83 | 0.00 | 0.00 | 1.94 |
2144 | 3229 | 9.265901 | GATAGGAAAATGATCAGATCTCGAAAA | 57.734 | 33.333 | 11.83 | 0.00 | 0.00 | 2.29 |
2145 | 3230 | 7.596621 | CGATAGGAAAATGATCAGATCTCGAAA | 59.403 | 37.037 | 11.83 | 0.00 | 0.00 | 3.46 |
2146 | 3231 | 7.087007 | CGATAGGAAAATGATCAGATCTCGAA | 58.913 | 38.462 | 11.83 | 0.00 | 0.00 | 3.71 |
2147 | 3232 | 6.207614 | ACGATAGGAAAATGATCAGATCTCGA | 59.792 | 38.462 | 15.79 | 0.00 | 43.77 | 4.04 |
2148 | 3233 | 6.385843 | ACGATAGGAAAATGATCAGATCTCG | 58.614 | 40.000 | 11.83 | 10.75 | 43.77 | 4.04 |
2149 | 3234 | 7.374272 | TGACGATAGGAAAATGATCAGATCTC | 58.626 | 38.462 | 11.83 | 0.78 | 43.77 | 2.75 |
2150 | 3235 | 7.232330 | TCTGACGATAGGAAAATGATCAGATCT | 59.768 | 37.037 | 11.83 | 0.00 | 37.12 | 2.75 |
2151 | 3236 | 7.374272 | TCTGACGATAGGAAAATGATCAGATC | 58.626 | 38.462 | 0.09 | 3.11 | 37.12 | 2.75 |
2152 | 3237 | 7.015098 | ACTCTGACGATAGGAAAATGATCAGAT | 59.985 | 37.037 | 0.09 | 0.00 | 40.25 | 2.90 |
2153 | 3238 | 6.322456 | ACTCTGACGATAGGAAAATGATCAGA | 59.678 | 38.462 | 0.09 | 0.00 | 39.12 | 3.27 |
2154 | 3239 | 6.511416 | ACTCTGACGATAGGAAAATGATCAG | 58.489 | 40.000 | 0.09 | 0.00 | 43.77 | 2.90 |
2155 | 3240 | 6.322456 | AGACTCTGACGATAGGAAAATGATCA | 59.678 | 38.462 | 0.00 | 0.00 | 43.77 | 2.92 |
2156 | 3241 | 6.744112 | AGACTCTGACGATAGGAAAATGATC | 58.256 | 40.000 | 0.00 | 0.00 | 43.77 | 2.92 |
2157 | 3242 | 6.723298 | AGACTCTGACGATAGGAAAATGAT | 57.277 | 37.500 | 0.00 | 0.00 | 43.77 | 2.45 |
2158 | 3243 | 7.255625 | CCATAGACTCTGACGATAGGAAAATGA | 60.256 | 40.741 | 0.00 | 0.00 | 43.77 | 2.57 |
2159 | 3244 | 6.865726 | CCATAGACTCTGACGATAGGAAAATG | 59.134 | 42.308 | 0.00 | 0.00 | 43.77 | 2.32 |
2160 | 3245 | 6.517529 | GCCATAGACTCTGACGATAGGAAAAT | 60.518 | 42.308 | 0.00 | 0.00 | 43.77 | 1.82 |
2161 | 3246 | 5.221263 | GCCATAGACTCTGACGATAGGAAAA | 60.221 | 44.000 | 0.00 | 0.00 | 43.77 | 2.29 |
2162 | 3247 | 4.278669 | GCCATAGACTCTGACGATAGGAAA | 59.721 | 45.833 | 0.00 | 0.00 | 43.77 | 3.13 |
2163 | 3248 | 3.821600 | GCCATAGACTCTGACGATAGGAA | 59.178 | 47.826 | 0.00 | 0.00 | 43.77 | 3.36 |
2164 | 3249 | 3.413327 | GCCATAGACTCTGACGATAGGA | 58.587 | 50.000 | 0.00 | 0.00 | 43.77 | 2.94 |
2165 | 3250 | 2.160615 | CGCCATAGACTCTGACGATAGG | 59.839 | 54.545 | 0.00 | 0.00 | 43.77 | 2.57 |
2166 | 3251 | 2.160615 | CCGCCATAGACTCTGACGATAG | 59.839 | 54.545 | 0.00 | 0.00 | 46.19 | 2.08 |
2167 | 3252 | 2.152016 | CCGCCATAGACTCTGACGATA | 58.848 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
2168 | 3253 | 0.955178 | CCGCCATAGACTCTGACGAT | 59.045 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
2169 | 3254 | 0.393944 | ACCGCCATAGACTCTGACGA | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2170 | 3255 | 1.264557 | CTACCGCCATAGACTCTGACG | 59.735 | 57.143 | 0.00 | 0.00 | 0.00 | 4.35 |
2171 | 3256 | 1.609555 | CCTACCGCCATAGACTCTGAC | 59.390 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
2172 | 3257 | 1.478837 | CCCTACCGCCATAGACTCTGA | 60.479 | 57.143 | 0.00 | 0.00 | 0.00 | 3.27 |
2173 | 3258 | 0.962489 | CCCTACCGCCATAGACTCTG | 59.038 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2174 | 3259 | 0.556747 | ACCCTACCGCCATAGACTCT | 59.443 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2175 | 3260 | 2.283145 | TACCCTACCGCCATAGACTC | 57.717 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2176 | 3261 | 2.994957 | ATACCCTACCGCCATAGACT | 57.005 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2177 | 3262 | 3.828451 | TGTTATACCCTACCGCCATAGAC | 59.172 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2178 | 3263 | 4.116782 | TGTTATACCCTACCGCCATAGA | 57.883 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
2179 | 3264 | 4.877378 | TTGTTATACCCTACCGCCATAG | 57.123 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
2180 | 3265 | 5.088730 | AGATTGTTATACCCTACCGCCATA | 58.911 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2181 | 3266 | 3.908103 | AGATTGTTATACCCTACCGCCAT | 59.092 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
2182 | 3267 | 3.311091 | AGATTGTTATACCCTACCGCCA | 58.689 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
2183 | 3268 | 4.322273 | GGTAGATTGTTATACCCTACCGCC | 60.322 | 50.000 | 0.00 | 0.00 | 39.69 | 6.13 |
2184 | 3269 | 4.814147 | GGTAGATTGTTATACCCTACCGC | 58.186 | 47.826 | 0.00 | 0.00 | 39.69 | 5.68 |
2186 | 3271 | 4.525874 | AGCGGTAGATTGTTATACCCTACC | 59.474 | 45.833 | 0.00 | 0.00 | 43.50 | 3.18 |
2187 | 3272 | 5.718724 | AGCGGTAGATTGTTATACCCTAC | 57.281 | 43.478 | 0.00 | 0.00 | 38.60 | 3.18 |
2188 | 3273 | 7.233632 | TCTTAGCGGTAGATTGTTATACCCTA | 58.766 | 38.462 | 0.00 | 0.00 | 38.60 | 3.53 |
2189 | 3274 | 6.073314 | TCTTAGCGGTAGATTGTTATACCCT | 58.927 | 40.000 | 0.00 | 0.00 | 38.60 | 4.34 |
2190 | 3275 | 6.336842 | TCTTAGCGGTAGATTGTTATACCC | 57.663 | 41.667 | 0.00 | 0.00 | 38.60 | 3.69 |
2191 | 3276 | 7.034397 | GGATCTTAGCGGTAGATTGTTATACC | 58.966 | 42.308 | 0.00 | 0.00 | 38.47 | 2.73 |
2192 | 3277 | 7.828712 | AGGATCTTAGCGGTAGATTGTTATAC | 58.171 | 38.462 | 0.00 | 0.00 | 32.64 | 1.47 |
2193 | 3278 | 8.304596 | CAAGGATCTTAGCGGTAGATTGTTATA | 58.695 | 37.037 | 0.00 | 0.00 | 32.64 | 0.98 |
2194 | 3279 | 6.919775 | AGGATCTTAGCGGTAGATTGTTAT | 57.080 | 37.500 | 0.00 | 0.00 | 32.64 | 1.89 |
2195 | 3280 | 6.322969 | TCAAGGATCTTAGCGGTAGATTGTTA | 59.677 | 38.462 | 0.00 | 0.00 | 32.64 | 2.41 |
2196 | 3281 | 5.128827 | TCAAGGATCTTAGCGGTAGATTGTT | 59.871 | 40.000 | 0.00 | 0.00 | 32.64 | 2.83 |
2197 | 3282 | 4.649674 | TCAAGGATCTTAGCGGTAGATTGT | 59.350 | 41.667 | 0.00 | 0.00 | 32.64 | 2.71 |
2198 | 3283 | 5.201713 | TCAAGGATCTTAGCGGTAGATTG | 57.798 | 43.478 | 0.00 | 0.00 | 32.64 | 2.67 |
2199 | 3284 | 5.221541 | CCTTCAAGGATCTTAGCGGTAGATT | 60.222 | 44.000 | 0.00 | 0.00 | 37.67 | 2.40 |
2200 | 3285 | 4.282195 | CCTTCAAGGATCTTAGCGGTAGAT | 59.718 | 45.833 | 0.00 | 0.60 | 37.67 | 1.98 |
2201 | 3286 | 3.637229 | CCTTCAAGGATCTTAGCGGTAGA | 59.363 | 47.826 | 0.00 | 0.00 | 37.67 | 2.59 |
2202 | 3287 | 3.385111 | ACCTTCAAGGATCTTAGCGGTAG | 59.615 | 47.826 | 11.59 | 0.00 | 37.67 | 3.18 |
2203 | 3288 | 3.371965 | ACCTTCAAGGATCTTAGCGGTA | 58.628 | 45.455 | 11.59 | 0.00 | 37.67 | 4.02 |
2204 | 3289 | 2.188817 | ACCTTCAAGGATCTTAGCGGT | 58.811 | 47.619 | 11.59 | 0.00 | 37.67 | 5.68 |
2205 | 3290 | 2.939103 | CAACCTTCAAGGATCTTAGCGG | 59.061 | 50.000 | 11.59 | 0.00 | 37.67 | 5.52 |
2206 | 3291 | 2.939103 | CCAACCTTCAAGGATCTTAGCG | 59.061 | 50.000 | 11.59 | 0.00 | 37.67 | 4.26 |
2207 | 3292 | 3.054361 | TCCCAACCTTCAAGGATCTTAGC | 60.054 | 47.826 | 11.59 | 0.00 | 37.67 | 3.09 |
2208 | 3293 | 4.844349 | TCCCAACCTTCAAGGATCTTAG | 57.156 | 45.455 | 11.59 | 0.00 | 37.67 | 2.18 |
2209 | 3294 | 4.628715 | GCATCCCAACCTTCAAGGATCTTA | 60.629 | 45.833 | 11.59 | 0.00 | 37.67 | 2.10 |
2210 | 3295 | 3.879321 | GCATCCCAACCTTCAAGGATCTT | 60.879 | 47.826 | 11.59 | 0.00 | 37.67 | 2.40 |
2211 | 3296 | 2.357569 | GCATCCCAACCTTCAAGGATCT | 60.358 | 50.000 | 11.59 | 0.00 | 37.67 | 2.75 |
2212 | 3297 | 2.027385 | GCATCCCAACCTTCAAGGATC | 58.973 | 52.381 | 11.59 | 0.00 | 37.67 | 3.36 |
2213 | 3298 | 1.358787 | TGCATCCCAACCTTCAAGGAT | 59.641 | 47.619 | 11.59 | 0.00 | 37.67 | 3.24 |
2214 | 3299 | 0.776810 | TGCATCCCAACCTTCAAGGA | 59.223 | 50.000 | 11.59 | 0.00 | 37.67 | 3.36 |
2215 | 3300 | 0.890683 | GTGCATCCCAACCTTCAAGG | 59.109 | 55.000 | 0.22 | 0.22 | 42.49 | 3.61 |
2216 | 3301 | 0.523072 | CGTGCATCCCAACCTTCAAG | 59.477 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2217 | 3302 | 1.523154 | GCGTGCATCCCAACCTTCAA | 61.523 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2218 | 3303 | 1.971167 | GCGTGCATCCCAACCTTCA | 60.971 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
2219 | 3304 | 2.700773 | GGCGTGCATCCCAACCTTC | 61.701 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
2220 | 3305 | 1.847798 | TAGGCGTGCATCCCAACCTT | 61.848 | 55.000 | 8.13 | 0.00 | 34.84 | 3.50 |
2221 | 3306 | 2.297895 | TAGGCGTGCATCCCAACCT | 61.298 | 57.895 | 8.13 | 3.51 | 36.51 | 3.50 |
2222 | 3307 | 2.112815 | GTAGGCGTGCATCCCAACC | 61.113 | 63.158 | 8.13 | 0.00 | 0.00 | 3.77 |
2223 | 3308 | 2.112815 | GGTAGGCGTGCATCCCAAC | 61.113 | 63.158 | 8.13 | 5.71 | 0.00 | 3.77 |
2224 | 3309 | 2.270850 | GGTAGGCGTGCATCCCAA | 59.729 | 61.111 | 8.13 | 0.00 | 0.00 | 4.12 |
2225 | 3310 | 4.155733 | CGGTAGGCGTGCATCCCA | 62.156 | 66.667 | 8.13 | 0.00 | 0.00 | 4.37 |
2235 | 3320 | 9.177304 | GATACTTAAAAATTATTTGCGGTAGGC | 57.823 | 33.333 | 0.00 | 0.00 | 43.96 | 3.93 |
2253 | 3338 | 8.726988 | GGTACAGAAACTGCATTTGATACTTAA | 58.273 | 33.333 | 0.00 | 0.00 | 34.37 | 1.85 |
2254 | 3339 | 7.335924 | GGGTACAGAAACTGCATTTGATACTTA | 59.664 | 37.037 | 0.00 | 0.00 | 34.37 | 2.24 |
2255 | 3340 | 6.151144 | GGGTACAGAAACTGCATTTGATACTT | 59.849 | 38.462 | 0.00 | 0.00 | 34.37 | 2.24 |
2256 | 3341 | 5.648092 | GGGTACAGAAACTGCATTTGATACT | 59.352 | 40.000 | 0.00 | 0.00 | 34.37 | 2.12 |
2257 | 3342 | 5.414454 | TGGGTACAGAAACTGCATTTGATAC | 59.586 | 40.000 | 0.00 | 0.00 | 34.37 | 2.24 |
2258 | 3343 | 5.414454 | GTGGGTACAGAAACTGCATTTGATA | 59.586 | 40.000 | 0.00 | 0.00 | 34.37 | 2.15 |
2259 | 3344 | 4.218417 | GTGGGTACAGAAACTGCATTTGAT | 59.782 | 41.667 | 0.00 | 0.00 | 34.37 | 2.57 |
2260 | 3345 | 3.568007 | GTGGGTACAGAAACTGCATTTGA | 59.432 | 43.478 | 0.00 | 0.00 | 34.37 | 2.69 |
2261 | 3346 | 3.305335 | GGTGGGTACAGAAACTGCATTTG | 60.305 | 47.826 | 0.00 | 0.00 | 34.37 | 2.32 |
2262 | 3347 | 2.890945 | GGTGGGTACAGAAACTGCATTT | 59.109 | 45.455 | 0.00 | 0.00 | 34.37 | 2.32 |
2263 | 3348 | 2.108250 | AGGTGGGTACAGAAACTGCATT | 59.892 | 45.455 | 0.00 | 0.00 | 34.37 | 3.56 |
2264 | 3349 | 1.705186 | AGGTGGGTACAGAAACTGCAT | 59.295 | 47.619 | 0.00 | 0.00 | 34.37 | 3.96 |
2265 | 3350 | 1.136828 | AGGTGGGTACAGAAACTGCA | 58.863 | 50.000 | 0.00 | 0.00 | 34.37 | 4.41 |
2266 | 3351 | 2.973945 | CTAGGTGGGTACAGAAACTGC | 58.026 | 52.381 | 0.00 | 0.00 | 34.37 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.