Multiple sequence alignment - TraesCS2A01G501100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G501100 chr2A 100.000 2594 0 0 1 2594 729579854 729582447 0.000000e+00 4791.0
1 TraesCS2A01G501100 chr2A 83.708 356 41 10 23 364 529691344 529690992 1.160000e-83 320.0
2 TraesCS2A01G501100 chr2A 79.016 305 52 9 2004 2299 448295599 448295298 5.660000e-47 198.0
3 TraesCS2A01G501100 chr2A 90.000 50 5 0 2488 2537 10909205 10909254 5.990000e-07 65.8
4 TraesCS2A01G501100 chr2D 95.502 1445 43 10 546 1984 595556482 595557910 0.000000e+00 2289.0
5 TraesCS2A01G501100 chr2D 89.484 523 48 2 2078 2594 595558286 595558807 0.000000e+00 654.0
6 TraesCS2A01G501100 chr2D 87.714 350 34 2 23 364 392051753 392051405 1.450000e-107 399.0
7 TraesCS2A01G501100 chr2B 95.661 968 39 3 678 1643 723446286 723447252 0.000000e+00 1552.0
8 TraesCS2A01G501100 chr2B 92.697 356 16 4 18 364 775848971 775849325 2.980000e-139 505.0
9 TraesCS2A01G501100 chr2B 92.212 321 19 1 1672 1992 723447252 723447566 1.420000e-122 449.0
10 TraesCS2A01G501100 chr2B 88.176 296 21 7 393 683 723445848 723446134 8.890000e-90 340.0
11 TraesCS2A01G501100 chr2B 87.864 206 19 1 159 364 463853790 463853591 1.200000e-58 237.0
12 TraesCS2A01G501100 chr2B 89.189 148 13 3 17 162 463855280 463855134 5.700000e-42 182.0
13 TraesCS2A01G501100 chr2B 81.373 102 14 4 2441 2542 793813468 793813564 7.700000e-11 78.7
14 TraesCS2A01G501100 chr2B 82.432 74 12 1 2493 2566 217794825 217794897 2.160000e-06 63.9
15 TraesCS2A01G501100 chr7B 91.117 349 22 5 24 364 80526711 80527058 5.060000e-127 464.0
16 TraesCS2A01G501100 chr7B 82.759 87 15 0 1379 1465 440815484 440815570 7.700000e-11 78.7
17 TraesCS2A01G501100 chr4A 86.550 342 37 4 31 364 445812129 445811789 4.080000e-98 368.0
18 TraesCS2A01G501100 chr4A 79.705 271 42 7 2031 2294 701445974 701445710 1.590000e-42 183.0
19 TraesCS2A01G501100 chr4A 81.356 177 30 3 2124 2299 346065366 346065540 9.680000e-30 141.0
20 TraesCS2A01G501100 chr5A 84.814 349 43 9 20 364 683278422 683278764 2.470000e-90 342.0
21 TraesCS2A01G501100 chr5A 74.913 287 53 13 24 297 531897665 531897945 2.110000e-21 113.0
22 TraesCS2A01G501100 chr4B 85.015 327 37 4 44 358 188604015 188604341 3.220000e-84 322.0
23 TraesCS2A01G501100 chr4B 80.220 273 41 9 2035 2298 135219254 135218986 2.630000e-45 193.0
24 TraesCS2A01G501100 chr4B 84.615 91 13 1 2488 2578 604444728 604444639 3.560000e-14 89.8
25 TraesCS2A01G501100 chr4B 82.353 102 13 4 2441 2542 51632951 51633047 1.650000e-12 84.2
26 TraesCS2A01G501100 chr3B 86.557 305 26 10 14 308 722304738 722305037 3.220000e-84 322.0
27 TraesCS2A01G501100 chr3B 80.488 164 26 6 2431 2593 618687114 618687272 1.260000e-23 121.0
28 TraesCS2A01G501100 chr7A 79.048 315 55 8 2004 2309 234540530 234540842 3.380000e-49 206.0
29 TraesCS2A01G501100 chr6B 78.884 251 43 9 2054 2299 117805879 117805634 7.430000e-36 161.0
30 TraesCS2A01G501100 chr1D 82.105 190 26 6 2124 2310 310164582 310164766 3.460000e-34 156.0
31 TraesCS2A01G501100 chr1A 81.111 180 27 6 2124 2300 367030166 367029991 1.250000e-28 137.0
32 TraesCS2A01G501100 chr4D 90.909 99 6 3 5 103 58386755 58386660 2.090000e-26 130.0
33 TraesCS2A01G501100 chr6D 76.331 169 34 5 2427 2594 40520378 40520215 4.600000e-13 86.1
34 TraesCS2A01G501100 chr7D 82.759 87 15 0 1379 1465 423711356 423711442 7.700000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G501100 chr2A 729579854 729582447 2593 False 4791.000000 4791 100.000000 1 2594 1 chr2A.!!$F2 2593
1 TraesCS2A01G501100 chr2D 595556482 595558807 2325 False 1471.500000 2289 92.493000 546 2594 2 chr2D.!!$F1 2048
2 TraesCS2A01G501100 chr2B 723445848 723447566 1718 False 780.333333 1552 92.016333 393 1992 3 chr2B.!!$F4 1599
3 TraesCS2A01G501100 chr2B 463853591 463855280 1689 True 209.500000 237 88.526500 17 364 2 chr2B.!!$R1 347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 1860 0.03601 CCTCCGTTGCACCTCTGAAT 60.036 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 3229 0.036765 GGTCGGTGCACCACAATCTA 60.037 55.0 34.16 8.26 35.86 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.225496 ACAGAGAGGAGTGTGAAGGGAT 60.225 50.000 0.00 0.00 0.00 3.85
136 137 1.614317 CCCTGGACATTGACCTGAACC 60.614 57.143 12.32 0.00 0.00 3.62
142 143 3.496870 GGACATTGACCTGAACCTGAAGT 60.497 47.826 0.00 0.00 0.00 3.01
143 144 3.480470 ACATTGACCTGAACCTGAAGTG 58.520 45.455 0.00 0.00 0.00 3.16
145 146 3.475566 TTGACCTGAACCTGAAGTGAG 57.524 47.619 0.00 0.00 0.00 3.51
155 156 1.339151 CCTGAAGTGAGGCACCTAACC 60.339 57.143 0.09 0.00 34.49 2.85
157 158 0.391263 GAAGTGAGGCACCTAACCGG 60.391 60.000 0.00 0.00 34.49 5.28
171 1519 5.121768 CACCTAACCGGTAGACTGAATTTTG 59.878 44.000 8.00 0.00 46.94 2.44
173 1521 5.350640 CCTAACCGGTAGACTGAATTTTGAC 59.649 44.000 8.00 0.00 30.50 3.18
196 1544 2.809665 GCTAACTGGGCCTGATGATGAG 60.810 54.545 18.12 0.00 0.00 2.90
197 1545 0.106819 AACTGGGCCTGATGATGAGC 60.107 55.000 18.12 0.00 0.00 4.26
198 1546 0.987081 ACTGGGCCTGATGATGAGCT 60.987 55.000 18.12 0.00 0.00 4.09
199 1547 0.183014 CTGGGCCTGATGATGAGCTT 59.817 55.000 4.53 0.00 0.00 3.74
200 1548 0.627451 TGGGCCTGATGATGAGCTTT 59.373 50.000 4.53 0.00 0.00 3.51
201 1549 1.006281 TGGGCCTGATGATGAGCTTTT 59.994 47.619 4.53 0.00 0.00 2.27
217 1565 4.243007 GCTTTTACATTGAAGCACCTGT 57.757 40.909 3.43 0.00 45.74 4.00
226 1574 5.477984 ACATTGAAGCACCTGTTAACATGAT 59.522 36.000 16.57 6.05 0.00 2.45
249 1597 9.396022 TGATCTATTCTAGTTGGATGAAAAACC 57.604 33.333 0.00 0.00 0.00 3.27
254 1602 2.582052 AGTTGGATGAAAAACCGCAGA 58.418 42.857 0.00 0.00 0.00 4.26
287 1635 3.607741 CTGCAAGAAGTGGTCTGATGAT 58.392 45.455 0.00 0.00 36.40 2.45
300 1648 2.158711 TCTGATGATCCAATGACCTGCC 60.159 50.000 0.00 0.00 0.00 4.85
304 1652 1.718757 GATCCAATGACCTGCCGTGC 61.719 60.000 0.00 0.00 0.00 5.34
305 1653 2.202236 ATCCAATGACCTGCCGTGCT 62.202 55.000 0.00 0.00 0.00 4.40
319 1667 2.477825 CCGTGCTGAAGATGGATGTAG 58.522 52.381 0.00 0.00 0.00 2.74
323 1671 3.064545 GTGCTGAAGATGGATGTAGTTGC 59.935 47.826 0.00 0.00 0.00 4.17
325 1673 2.868583 CTGAAGATGGATGTAGTTGCCG 59.131 50.000 0.00 0.00 0.00 5.69
326 1674 2.236146 TGAAGATGGATGTAGTTGCCGT 59.764 45.455 0.00 0.00 0.00 5.68
343 1691 1.409412 CGTCTCCGAAGCCAATATCG 58.591 55.000 0.00 0.00 38.74 2.92
352 1700 1.800805 AGCCAATATCGCGGAATCTG 58.199 50.000 6.13 0.00 0.00 2.90
358 1706 4.319046 CCAATATCGCGGAATCTGTGAAAG 60.319 45.833 9.57 0.59 0.00 2.62
364 1712 3.058914 CGCGGAATCTGTGAAAGAAGTTT 60.059 43.478 0.00 0.00 38.79 2.66
365 1713 4.467735 GCGGAATCTGTGAAAGAAGTTTC 58.532 43.478 0.00 0.00 42.27 2.78
376 1724 5.718146 TGAAAGAAGTTTCATGTTGTTGCA 58.282 33.333 0.00 0.00 45.82 4.08
377 1725 5.806502 TGAAAGAAGTTTCATGTTGTTGCAG 59.193 36.000 0.00 0.00 45.82 4.41
378 1726 4.989279 AGAAGTTTCATGTTGTTGCAGT 57.011 36.364 0.00 0.00 0.00 4.40
379 1727 4.925068 AGAAGTTTCATGTTGTTGCAGTC 58.075 39.130 0.00 0.00 0.00 3.51
380 1728 4.641989 AGAAGTTTCATGTTGTTGCAGTCT 59.358 37.500 0.00 0.00 0.00 3.24
381 1729 4.558538 AGTTTCATGTTGTTGCAGTCTC 57.441 40.909 0.00 0.00 0.00 3.36
382 1730 3.316308 AGTTTCATGTTGTTGCAGTCTCC 59.684 43.478 0.00 0.00 0.00 3.71
383 1731 1.511850 TCATGTTGTTGCAGTCTCCG 58.488 50.000 0.00 0.00 0.00 4.63
384 1732 1.069978 TCATGTTGTTGCAGTCTCCGA 59.930 47.619 0.00 0.00 0.00 4.55
385 1733 1.872952 CATGTTGTTGCAGTCTCCGAA 59.127 47.619 0.00 0.00 0.00 4.30
386 1734 1.581934 TGTTGTTGCAGTCTCCGAAG 58.418 50.000 0.00 0.00 0.00 3.79
387 1735 0.235926 GTTGTTGCAGTCTCCGAAGC 59.764 55.000 0.00 0.00 0.00 3.86
388 1736 0.884704 TTGTTGCAGTCTCCGAAGCC 60.885 55.000 0.00 0.00 0.00 4.35
389 1737 1.301716 GTTGCAGTCTCCGAAGCCA 60.302 57.895 0.00 0.00 0.00 4.75
390 1738 0.884704 GTTGCAGTCTCCGAAGCCAA 60.885 55.000 0.00 0.00 0.00 4.52
391 1739 0.036732 TTGCAGTCTCCGAAGCCAAT 59.963 50.000 0.00 0.00 0.00 3.16
395 1743 2.398498 CAGTCTCCGAAGCCAATATCG 58.602 52.381 0.00 0.00 38.74 2.92
408 1756 2.612212 CCAATATCGCGGCAAACTTACT 59.388 45.455 6.13 0.00 0.00 2.24
410 1758 3.944422 ATATCGCGGCAAACTTACTTG 57.056 42.857 6.13 0.00 0.00 3.16
434 1782 6.086222 GCACTAAGCAATTGAAATTCGAGAA 58.914 36.000 10.34 0.00 44.79 2.87
498 1846 4.950205 TTTTAAGCCCTAGATACCTCCG 57.050 45.455 0.00 0.00 0.00 4.63
507 1855 0.824759 AGATACCTCCGTTGCACCTC 59.175 55.000 0.00 0.00 0.00 3.85
512 1860 0.036010 CCTCCGTTGCACCTCTGAAT 60.036 55.000 0.00 0.00 0.00 2.57
518 1866 2.416547 CGTTGCACCTCTGAATACCTTG 59.583 50.000 0.00 0.00 0.00 3.61
519 1867 2.749621 GTTGCACCTCTGAATACCTTGG 59.250 50.000 0.00 0.00 0.00 3.61
591 1939 1.361668 CGACGCCCTCCAAACATCAG 61.362 60.000 0.00 0.00 0.00 2.90
604 1952 1.624336 ACATCAGCCACTGCACATTT 58.376 45.000 0.00 0.00 41.13 2.32
605 1953 1.965643 ACATCAGCCACTGCACATTTT 59.034 42.857 0.00 0.00 41.13 1.82
618 1966 2.799412 GCACATTTTCAATGCCAAACGA 59.201 40.909 0.00 0.00 33.06 3.85
621 1969 4.269603 CACATTTTCAATGCCAAACGAACA 59.730 37.500 0.00 0.00 0.00 3.18
622 1970 5.050227 CACATTTTCAATGCCAAACGAACAT 60.050 36.000 0.00 0.00 0.00 2.71
623 1971 6.145209 CACATTTTCAATGCCAAACGAACATA 59.855 34.615 0.00 0.00 0.00 2.29
713 2223 1.403116 CGTTGCAGTGTACATCGGGTA 60.403 52.381 0.00 0.00 0.00 3.69
773 2284 4.916249 GGAAATTAGCGTGGTAGATAGACG 59.084 45.833 0.00 0.00 36.18 4.18
802 2313 4.168014 CCATTTGATCACACCATTTCACG 58.832 43.478 0.00 0.00 0.00 4.35
949 2460 0.597377 GCCAGGCAACAACCTTTTCG 60.597 55.000 6.55 0.00 38.26 3.46
971 2482 2.194201 TTCCCTCGAATGGTTTGACC 57.806 50.000 0.94 0.00 39.22 4.02
1811 3322 2.675423 TGCGGTCTAGCTGACGGT 60.675 61.111 18.14 0.00 46.24 4.83
1829 3340 3.181494 ACGGTCGTCATTCGTTCATGATA 60.181 43.478 0.00 0.00 40.80 2.15
1899 3410 4.911390 AGCGGGCTTTTTGATAGCTATAT 58.089 39.130 6.13 0.00 38.67 0.86
1900 3411 4.697352 AGCGGGCTTTTTGATAGCTATATG 59.303 41.667 6.13 0.00 38.67 1.78
1901 3412 4.455877 GCGGGCTTTTTGATAGCTATATGT 59.544 41.667 6.13 0.00 38.67 2.29
1902 3413 5.642063 GCGGGCTTTTTGATAGCTATATGTA 59.358 40.000 6.13 0.00 38.67 2.29
1903 3414 6.316390 GCGGGCTTTTTGATAGCTATATGTAT 59.684 38.462 6.13 0.00 38.67 2.29
1904 3415 7.494625 GCGGGCTTTTTGATAGCTATATGTATA 59.505 37.037 6.13 0.00 38.67 1.47
1932 3443 1.680105 GCGTTCACCGTCCGTATGTG 61.680 60.000 0.00 0.00 39.32 3.21
1992 3503 1.275291 CACGTGACATACAGGAACCCT 59.725 52.381 10.90 0.00 37.74 4.34
2000 3511 3.148084 CAGGAACCCTGTCCACGT 58.852 61.111 4.88 0.00 45.82 4.49
2001 3512 2.358039 CAGGAACCCTGTCCACGTA 58.642 57.895 4.88 0.00 45.82 3.57
2002 3513 0.246635 CAGGAACCCTGTCCACGTAG 59.753 60.000 4.88 0.00 45.82 3.51
2003 3514 0.178941 AGGAACCCTGTCCACGTAGT 60.179 55.000 0.00 0.00 40.48 2.73
2004 3515 0.683412 GGAACCCTGTCCACGTAGTT 59.317 55.000 0.00 0.00 41.61 2.24
2005 3516 1.071228 GGAACCCTGTCCACGTAGTTT 59.929 52.381 0.00 0.00 41.61 2.66
2006 3517 2.486013 GGAACCCTGTCCACGTAGTTTT 60.486 50.000 0.00 0.00 41.61 2.43
2007 3518 3.208594 GAACCCTGTCCACGTAGTTTTT 58.791 45.455 0.00 0.00 41.61 1.94
2026 3537 1.647346 TTTTAGCACGGCATAGACGG 58.353 50.000 0.00 0.00 39.02 4.79
2027 3538 0.818938 TTTAGCACGGCATAGACGGA 59.181 50.000 0.00 0.00 39.02 4.69
2028 3539 0.818938 TTAGCACGGCATAGACGGAA 59.181 50.000 0.00 0.00 39.02 4.30
2029 3540 0.818938 TAGCACGGCATAGACGGAAA 59.181 50.000 0.00 0.00 39.02 3.13
2030 3541 0.178068 AGCACGGCATAGACGGAAAT 59.822 50.000 0.00 0.00 39.02 2.17
2031 3542 0.304705 GCACGGCATAGACGGAAATG 59.695 55.000 0.00 0.00 39.02 2.32
2032 3543 0.304705 CACGGCATAGACGGAAATGC 59.695 55.000 8.98 8.98 46.20 3.56
2033 3544 0.178068 ACGGCATAGACGGAAATGCT 59.822 50.000 14.92 0.00 46.16 3.79
2034 3545 0.861837 CGGCATAGACGGAAATGCTC 59.138 55.000 14.92 7.08 46.16 4.26
2035 3546 1.806247 CGGCATAGACGGAAATGCTCA 60.806 52.381 14.92 0.00 46.16 4.26
2036 3547 2.498167 GGCATAGACGGAAATGCTCAT 58.502 47.619 14.92 0.00 46.16 2.90
2037 3548 3.664107 GGCATAGACGGAAATGCTCATA 58.336 45.455 14.92 0.00 46.16 2.15
2038 3549 4.256920 GGCATAGACGGAAATGCTCATAT 58.743 43.478 14.92 0.00 46.16 1.78
2039 3550 5.419542 GGCATAGACGGAAATGCTCATATA 58.580 41.667 14.92 0.00 46.16 0.86
2040 3551 6.051717 GGCATAGACGGAAATGCTCATATAT 58.948 40.000 14.92 0.00 46.16 0.86
2041 3552 7.210174 GGCATAGACGGAAATGCTCATATATA 58.790 38.462 14.92 0.00 46.16 0.86
2042 3553 7.169982 GGCATAGACGGAAATGCTCATATATAC 59.830 40.741 14.92 0.00 46.16 1.47
2043 3554 7.096436 GCATAGACGGAAATGCTCATATATACG 60.096 40.741 9.92 0.00 44.08 3.06
2044 3555 5.103000 AGACGGAAATGCTCATATATACGC 58.897 41.667 0.00 0.00 0.00 4.42
2045 3556 3.857665 ACGGAAATGCTCATATATACGCG 59.142 43.478 3.53 3.53 0.00 6.01
2046 3557 3.301835 CGGAAATGCTCATATATACGCGC 60.302 47.826 5.73 0.00 0.00 6.86
2047 3558 3.616821 GGAAATGCTCATATATACGCGCA 59.383 43.478 5.73 0.00 0.00 6.09
2048 3559 4.271049 GGAAATGCTCATATATACGCGCAT 59.729 41.667 5.73 0.00 39.53 4.73
2049 3560 5.220662 GGAAATGCTCATATATACGCGCATT 60.221 40.000 11.99 11.99 46.40 3.56
2050 3561 6.019075 GGAAATGCTCATATATACGCGCATTA 60.019 38.462 16.67 0.00 44.46 1.90
2051 3562 5.890110 ATGCTCATATATACGCGCATTAC 57.110 39.130 5.73 0.00 34.77 1.89
2052 3563 4.739195 TGCTCATATATACGCGCATTACA 58.261 39.130 5.73 0.00 0.00 2.41
2053 3564 5.348164 TGCTCATATATACGCGCATTACAT 58.652 37.500 5.73 0.00 0.00 2.29
2054 3565 5.810074 TGCTCATATATACGCGCATTACATT 59.190 36.000 5.73 0.00 0.00 2.71
2055 3566 6.312672 TGCTCATATATACGCGCATTACATTT 59.687 34.615 5.73 0.00 0.00 2.32
2056 3567 7.489757 TGCTCATATATACGCGCATTACATTTA 59.510 33.333 5.73 0.00 0.00 1.40
2057 3568 7.787935 GCTCATATATACGCGCATTACATTTAC 59.212 37.037 5.73 0.00 0.00 2.01
2058 3569 8.122306 TCATATATACGCGCATTACATTTACC 57.878 34.615 5.73 0.00 0.00 2.85
2059 3570 5.789710 ATATACGCGCATTACATTTACCC 57.210 39.130 5.73 0.00 0.00 3.69
2060 3571 2.032680 ACGCGCATTACATTTACCCT 57.967 45.000 5.73 0.00 0.00 4.34
2061 3572 2.361789 ACGCGCATTACATTTACCCTT 58.638 42.857 5.73 0.00 0.00 3.95
2062 3573 2.096819 ACGCGCATTACATTTACCCTTG 59.903 45.455 5.73 0.00 0.00 3.61
2063 3574 2.096819 CGCGCATTACATTTACCCTTGT 59.903 45.455 8.75 0.00 0.00 3.16
2064 3575 3.434637 GCGCATTACATTTACCCTTGTG 58.565 45.455 0.30 0.00 0.00 3.33
2065 3576 3.127895 GCGCATTACATTTACCCTTGTGA 59.872 43.478 0.30 0.00 0.00 3.58
2066 3577 4.380023 GCGCATTACATTTACCCTTGTGAA 60.380 41.667 0.30 0.00 0.00 3.18
2067 3578 5.092781 CGCATTACATTTACCCTTGTGAAC 58.907 41.667 0.00 0.00 0.00 3.18
2068 3579 5.092781 GCATTACATTTACCCTTGTGAACG 58.907 41.667 0.00 0.00 0.00 3.95
2069 3580 4.752661 TTACATTTACCCTTGTGAACGC 57.247 40.909 0.00 0.00 0.00 4.84
2071 3864 2.292292 ACATTTACCCTTGTGAACGCAC 59.708 45.455 0.00 0.00 45.35 5.34
2087 3880 1.663643 CGCACATACGCACACCTTATT 59.336 47.619 0.00 0.00 0.00 1.40
2089 3882 2.675844 GCACATACGCACACCTTATTCA 59.324 45.455 0.00 0.00 0.00 2.57
2096 3889 5.023533 ACGCACACCTTATTCATATGAGT 57.976 39.130 5.39 5.70 0.00 3.41
2098 3891 5.983720 ACGCACACCTTATTCATATGAGTAC 59.016 40.000 7.40 0.00 0.00 2.73
2099 3892 5.117135 CGCACACCTTATTCATATGAGTACG 59.883 44.000 7.40 6.17 0.00 3.67
2105 3898 6.433404 ACCTTATTCATATGAGTACGTCCGAT 59.567 38.462 7.40 0.00 0.00 4.18
2140 3933 7.117812 CCGGCATATAGATTTTACGAAGTCATT 59.882 37.037 0.00 0.00 43.93 2.57
2142 3935 8.774586 GGCATATAGATTTTACGAAGTCATTGT 58.225 33.333 0.00 0.00 43.93 2.71
2161 3954 0.033920 TAGCCGCCTCGTAGTCGATA 59.966 55.000 0.00 0.00 45.21 2.92
2172 3965 2.796031 CGTAGTCGATAAGAGCGTCTCT 59.204 50.000 3.88 3.88 40.00 3.10
2183 3976 1.205893 GAGCGTCTCTTCCCACTGAAT 59.794 52.381 0.37 0.00 31.06 2.57
2213 4006 9.289303 CATCGACGGAATTCTTGAAATAAATTT 57.711 29.630 5.23 0.00 0.00 1.82
2251 4044 2.044793 AGGACTTGAACCCTGATGGA 57.955 50.000 0.00 0.00 38.00 3.41
2255 4048 3.308402 GGACTTGAACCCTGATGGATTGA 60.308 47.826 0.00 0.00 38.00 2.57
2257 4050 3.588842 ACTTGAACCCTGATGGATTGAGA 59.411 43.478 0.00 0.00 38.00 3.27
2268 4061 5.674525 TGATGGATTGAGAATACCACTGTC 58.325 41.667 0.00 0.00 35.19 3.51
2276 4069 5.030147 TGAGAATACCACTGTCCACCTAAT 58.970 41.667 0.00 0.00 0.00 1.73
2284 4077 4.385643 CCACTGTCCACCTAATCATCCAAT 60.386 45.833 0.00 0.00 0.00 3.16
2290 4083 4.721274 TCCACCTAATCATCCAATCACAGA 59.279 41.667 0.00 0.00 0.00 3.41
2294 4087 6.769341 CACCTAATCATCCAATCACAGATTGA 59.231 38.462 18.51 7.53 39.11 2.57
2364 4163 9.905171 AAAGAGCTTAGAAAAATCAGATTTGTC 57.095 29.630 15.93 15.93 36.87 3.18
2429 4228 1.894466 TCGGGTAAGTGATTTCGGACA 59.106 47.619 0.00 0.00 0.00 4.02
2454 4253 0.112412 GCCACCTCCTCCCAAAAAGA 59.888 55.000 0.00 0.00 0.00 2.52
2459 4258 4.013050 CACCTCCTCCCAAAAAGAAGATC 58.987 47.826 0.00 0.00 0.00 2.75
2466 4265 2.492088 CCCAAAAAGAAGATCGGGGTTC 59.508 50.000 0.00 0.00 0.00 3.62
2469 4268 3.808834 AAAAGAAGATCGGGGTTCCTT 57.191 42.857 0.00 0.00 0.00 3.36
2485 4284 1.294659 CCTTTGCCTCTCACTGACGC 61.295 60.000 0.00 0.00 0.00 5.19
2508 4307 2.361357 CCGGTCCACCTCGTCTCT 60.361 66.667 0.00 0.00 0.00 3.10
2555 4354 3.797353 GATCCCTGCCCTTGCCGA 61.797 66.667 0.00 0.00 36.33 5.54
2557 4356 3.350031 ATCCCTGCCCTTGCCGAAG 62.350 63.158 0.00 0.00 36.33 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 5.875224 TGTTCTCCCATTATTCAGTGTGAA 58.125 37.500 0.00 0.00 41.09 3.18
117 118 1.352352 AGGTTCAGGTCAATGTCCAGG 59.648 52.381 0.00 0.00 0.00 4.45
118 119 2.038952 TCAGGTTCAGGTCAATGTCCAG 59.961 50.000 0.00 0.00 0.00 3.86
136 137 1.673033 CGGTTAGGTGCCTCACTTCAG 60.673 57.143 0.00 0.00 34.40 3.02
155 156 3.997021 AGCTGTCAAAATTCAGTCTACCG 59.003 43.478 0.00 0.00 34.57 4.02
157 158 7.360438 CCAGTTAGCTGTCAAAATTCAGTCTAC 60.360 40.741 5.81 0.00 41.02 2.59
171 1519 0.543749 ATCAGGCCCAGTTAGCTGTC 59.456 55.000 0.00 0.00 41.02 3.51
173 1521 0.543277 TCATCAGGCCCAGTTAGCTG 59.457 55.000 0.00 0.00 42.22 4.24
183 1531 3.282021 TGTAAAAGCTCATCATCAGGCC 58.718 45.455 0.00 0.00 0.00 5.19
196 1544 4.243007 ACAGGTGCTTCAATGTAAAAGC 57.757 40.909 0.29 0.29 46.37 3.51
197 1545 7.199766 TGTTAACAGGTGCTTCAATGTAAAAG 58.800 34.615 3.59 0.00 0.00 2.27
198 1546 7.101652 TGTTAACAGGTGCTTCAATGTAAAA 57.898 32.000 3.59 0.00 0.00 1.52
199 1547 6.701145 TGTTAACAGGTGCTTCAATGTAAA 57.299 33.333 3.59 0.00 0.00 2.01
200 1548 6.488344 TCATGTTAACAGGTGCTTCAATGTAA 59.512 34.615 18.86 0.00 0.00 2.41
201 1549 6.000840 TCATGTTAACAGGTGCTTCAATGTA 58.999 36.000 18.86 0.00 0.00 2.29
226 1574 6.315393 GCGGTTTTTCATCCAACTAGAATAGA 59.685 38.462 0.00 0.00 42.77 1.98
243 1591 4.556699 GCTATTCAACAGTCTGCGGTTTTT 60.557 41.667 0.00 0.00 30.85 1.94
249 1597 1.061711 GCAGCTATTCAACAGTCTGCG 59.938 52.381 0.00 0.00 35.25 5.18
254 1602 4.214971 CACTTCTTGCAGCTATTCAACAGT 59.785 41.667 0.00 0.00 0.00 3.55
287 1635 2.359850 GCACGGCAGGTCATTGGA 60.360 61.111 0.00 0.00 0.00 3.53
300 1648 3.170791 ACTACATCCATCTTCAGCACG 57.829 47.619 0.00 0.00 0.00 5.34
304 1652 2.868583 CGGCAACTACATCCATCTTCAG 59.131 50.000 0.00 0.00 0.00 3.02
305 1653 2.236146 ACGGCAACTACATCCATCTTCA 59.764 45.455 0.00 0.00 0.00 3.02
325 1673 1.140816 GCGATATTGGCTTCGGAGAC 58.859 55.000 0.00 0.00 34.32 3.36
326 1674 0.318699 CGCGATATTGGCTTCGGAGA 60.319 55.000 0.00 0.00 35.93 3.71
343 1691 4.024048 TGAAACTTCTTTCACAGATTCCGC 60.024 41.667 0.00 0.00 40.76 5.54
352 1700 5.576384 TGCAACAACATGAAACTTCTTTCAC 59.424 36.000 0.00 0.00 46.79 3.18
358 1706 4.925068 AGACTGCAACAACATGAAACTTC 58.075 39.130 0.00 0.00 0.00 3.01
364 1712 1.069978 TCGGAGACTGCAACAACATGA 59.930 47.619 0.00 0.00 0.00 3.07
365 1713 1.511850 TCGGAGACTGCAACAACATG 58.488 50.000 0.00 0.00 0.00 3.21
366 1714 2.146342 CTTCGGAGACTGCAACAACAT 58.854 47.619 0.00 0.00 34.32 2.71
367 1715 1.581934 CTTCGGAGACTGCAACAACA 58.418 50.000 0.00 0.00 34.32 3.33
368 1716 0.235926 GCTTCGGAGACTGCAACAAC 59.764 55.000 0.00 0.00 36.48 3.32
369 1717 0.884704 GGCTTCGGAGACTGCAACAA 60.885 55.000 0.00 0.00 37.86 2.83
370 1718 1.301716 GGCTTCGGAGACTGCAACA 60.302 57.895 0.00 0.00 37.86 3.33
371 1719 0.884704 TTGGCTTCGGAGACTGCAAC 60.885 55.000 0.00 0.00 37.86 4.17
372 1720 0.036732 ATTGGCTTCGGAGACTGCAA 59.963 50.000 0.00 0.00 37.86 4.08
373 1721 0.901827 TATTGGCTTCGGAGACTGCA 59.098 50.000 0.00 0.00 37.86 4.41
374 1722 2.139118 GATATTGGCTTCGGAGACTGC 58.861 52.381 0.00 0.00 34.32 4.40
375 1723 2.398498 CGATATTGGCTTCGGAGACTG 58.602 52.381 0.00 0.00 34.32 3.51
376 1724 1.269831 GCGATATTGGCTTCGGAGACT 60.270 52.381 0.00 0.00 34.32 3.24
377 1725 1.140816 GCGATATTGGCTTCGGAGAC 58.859 55.000 0.00 0.00 34.32 3.36
378 1726 0.318699 CGCGATATTGGCTTCGGAGA 60.319 55.000 0.00 0.00 35.93 3.71
379 1727 1.284982 CCGCGATATTGGCTTCGGAG 61.285 60.000 8.23 0.00 39.23 4.63
380 1728 1.300620 CCGCGATATTGGCTTCGGA 60.301 57.895 8.23 0.00 39.23 4.55
381 1729 3.244105 CCGCGATATTGGCTTCGG 58.756 61.111 8.23 0.00 35.93 4.30
387 1735 2.612212 AGTAAGTTTGCCGCGATATTGG 59.388 45.455 8.23 0.00 0.00 3.16
388 1736 3.944422 AGTAAGTTTGCCGCGATATTG 57.056 42.857 8.23 0.00 0.00 1.90
389 1737 3.486875 GCAAGTAAGTTTGCCGCGATATT 60.487 43.478 8.23 0.00 45.93 1.28
390 1738 2.031683 GCAAGTAAGTTTGCCGCGATAT 59.968 45.455 8.23 0.00 45.93 1.63
391 1739 1.395608 GCAAGTAAGTTTGCCGCGATA 59.604 47.619 8.23 0.00 45.93 2.92
410 1758 5.631026 TCTCGAATTTCAATTGCTTAGTGC 58.369 37.500 0.00 0.00 43.25 4.40
411 1759 7.077605 TGTTCTCGAATTTCAATTGCTTAGTG 58.922 34.615 0.00 0.00 0.00 2.74
413 1761 7.301054 ACTGTTCTCGAATTTCAATTGCTTAG 58.699 34.615 0.00 0.00 0.00 2.18
414 1762 7.202016 ACTGTTCTCGAATTTCAATTGCTTA 57.798 32.000 0.00 0.00 0.00 3.09
415 1763 6.076981 ACTGTTCTCGAATTTCAATTGCTT 57.923 33.333 0.00 0.00 0.00 3.91
416 1764 5.695851 ACTGTTCTCGAATTTCAATTGCT 57.304 34.783 0.00 0.00 0.00 3.91
417 1765 7.078228 AGTAACTGTTCTCGAATTTCAATTGC 58.922 34.615 0.00 0.00 0.00 3.56
465 1813 8.102484 TCTAGGGCTTAAAAATAGATGGAACT 57.898 34.615 0.00 0.00 0.00 3.01
469 1817 8.606830 AGGTATCTAGGGCTTAAAAATAGATGG 58.393 37.037 0.00 0.00 35.42 3.51
498 1846 2.749621 CCAAGGTATTCAGAGGTGCAAC 59.250 50.000 0.00 0.00 0.00 4.17
507 1855 1.821216 AACGGCACCAAGGTATTCAG 58.179 50.000 0.00 0.00 0.00 3.02
512 1860 3.009612 GTGAAACGGCACCAAGGTA 57.990 52.632 0.00 0.00 32.68 3.08
519 1867 4.434713 AAATAATGAGGTGAAACGGCAC 57.565 40.909 0.00 0.00 38.12 5.01
591 1939 1.461897 GCATTGAAAATGTGCAGTGGC 59.538 47.619 0.00 0.00 38.68 5.01
604 1952 4.793071 CAGTATGTTCGTTTGGCATTGAA 58.207 39.130 0.00 0.00 0.00 2.69
605 1953 4.418013 CAGTATGTTCGTTTGGCATTGA 57.582 40.909 0.00 0.00 0.00 2.57
621 1969 6.044046 TGTAACGAAACAGTGTTGACAGTAT 58.956 36.000 9.79 0.00 0.00 2.12
622 1970 5.409211 TGTAACGAAACAGTGTTGACAGTA 58.591 37.500 9.79 0.00 0.00 2.74
623 1971 4.247258 TGTAACGAAACAGTGTTGACAGT 58.753 39.130 9.79 4.82 0.00 3.55
713 2223 6.932356 ACTCATTATTCATGCATCGAAACT 57.068 33.333 13.21 3.99 32.13 2.66
773 2284 5.895636 TGGTGTGATCAAATGGTTGTATC 57.104 39.130 0.00 0.00 36.07 2.24
824 2335 5.734855 TTGATCTGTAGCTAATTTTCGGC 57.265 39.130 0.00 0.00 0.00 5.54
929 2440 0.597377 GAAAAGGTTGTTGCCTGGCG 60.597 55.000 14.98 0.00 39.17 5.69
949 2460 3.305131 GGTCAAACCATTCGAGGGAAAAC 60.305 47.826 11.71 4.83 38.42 2.43
1281 2792 1.447838 CATGTCCCCGAACCTGACG 60.448 63.158 0.00 0.00 0.00 4.35
1683 3194 4.225340 CGTCGAGCTCGGGAGTCG 62.225 72.222 33.98 24.17 40.29 4.18
1705 3216 1.135915 ACAATCTACAGCTCAGCCTCG 59.864 52.381 0.00 0.00 0.00 4.63
1718 3229 0.036765 GGTCGGTGCACCACAATCTA 60.037 55.000 34.16 8.26 35.86 1.98
1740 3251 2.997897 GTCCCTCGGCCAGTCACT 60.998 66.667 2.24 0.00 0.00 3.41
1792 3303 2.577112 CGTCAGCTAGACCGCACG 60.577 66.667 9.71 0.00 44.66 5.34
1811 3322 5.049828 AGCAATATCATGAACGAATGACGA 58.950 37.500 0.00 0.00 45.77 4.20
1899 3410 0.670162 GAACGCCCGCCTAGTATACA 59.330 55.000 5.50 0.00 0.00 2.29
1900 3411 0.670162 TGAACGCCCGCCTAGTATAC 59.330 55.000 0.00 0.00 0.00 1.47
1901 3412 0.670162 GTGAACGCCCGCCTAGTATA 59.330 55.000 0.00 0.00 0.00 1.47
1902 3413 1.440476 GTGAACGCCCGCCTAGTAT 59.560 57.895 0.00 0.00 0.00 2.12
1903 3414 2.713967 GGTGAACGCCCGCCTAGTA 61.714 63.158 0.51 0.00 34.02 1.82
1904 3415 4.078516 GGTGAACGCCCGCCTAGT 62.079 66.667 0.51 0.00 34.02 2.57
1932 3443 3.298489 CACACACGTGTTGTACACTTC 57.702 47.619 20.79 0.00 46.46 3.01
1952 3463 7.543172 TCACGTGACAACTCCAAAACTATATAC 59.457 37.037 15.76 0.00 0.00 1.47
2006 3517 2.004017 CCGTCTATGCCGTGCTAAAAA 58.996 47.619 0.00 0.00 0.00 1.94
2007 3518 1.205179 TCCGTCTATGCCGTGCTAAAA 59.795 47.619 0.00 0.00 0.00 1.52
2008 3519 0.818938 TCCGTCTATGCCGTGCTAAA 59.181 50.000 0.00 0.00 0.00 1.85
2009 3520 0.818938 TTCCGTCTATGCCGTGCTAA 59.181 50.000 0.00 0.00 0.00 3.09
2010 3521 0.818938 TTTCCGTCTATGCCGTGCTA 59.181 50.000 0.00 0.00 0.00 3.49
2011 3522 0.178068 ATTTCCGTCTATGCCGTGCT 59.822 50.000 0.00 0.00 0.00 4.40
2012 3523 0.304705 CATTTCCGTCTATGCCGTGC 59.695 55.000 0.00 0.00 0.00 5.34
2013 3524 0.304705 GCATTTCCGTCTATGCCGTG 59.695 55.000 0.00 0.00 40.93 4.94
2014 3525 0.178068 AGCATTTCCGTCTATGCCGT 59.822 50.000 0.00 0.00 46.42 5.68
2015 3526 0.861837 GAGCATTTCCGTCTATGCCG 59.138 55.000 0.00 0.00 46.42 5.69
2016 3527 1.953559 TGAGCATTTCCGTCTATGCC 58.046 50.000 0.00 0.00 46.42 4.40
2017 3528 7.096436 CGTATATATGAGCATTTCCGTCTATGC 60.096 40.741 0.00 0.00 45.77 3.14
2018 3529 7.096436 GCGTATATATGAGCATTTCCGTCTATG 60.096 40.741 6.12 0.00 0.00 2.23
2019 3530 6.918569 GCGTATATATGAGCATTTCCGTCTAT 59.081 38.462 6.12 0.00 0.00 1.98
2020 3531 6.263344 GCGTATATATGAGCATTTCCGTCTA 58.737 40.000 6.12 0.00 0.00 2.59
2021 3532 5.103000 GCGTATATATGAGCATTTCCGTCT 58.897 41.667 6.12 0.00 0.00 4.18
2022 3533 4.027621 CGCGTATATATGAGCATTTCCGTC 60.028 45.833 6.12 0.00 0.00 4.79
2023 3534 3.857665 CGCGTATATATGAGCATTTCCGT 59.142 43.478 6.12 0.00 0.00 4.69
2024 3535 3.301835 GCGCGTATATATGAGCATTTCCG 60.302 47.826 21.51 7.61 37.84 4.30
2025 3536 3.616821 TGCGCGTATATATGAGCATTTCC 59.383 43.478 24.20 1.63 41.84 3.13
2026 3537 4.840401 TGCGCGTATATATGAGCATTTC 57.160 40.909 24.20 2.24 41.84 2.17
2031 3542 5.890110 ATGTAATGCGCGTATATATGAGC 57.110 39.130 20.14 20.14 38.31 4.26
2032 3543 8.266682 GGTAAATGTAATGCGCGTATATATGAG 58.733 37.037 10.90 3.76 0.00 2.90
2033 3544 7.223193 GGGTAAATGTAATGCGCGTATATATGA 59.777 37.037 10.90 0.00 0.00 2.15
2034 3545 7.223971 AGGGTAAATGTAATGCGCGTATATATG 59.776 37.037 10.90 0.00 0.00 1.78
2035 3546 7.270047 AGGGTAAATGTAATGCGCGTATATAT 58.730 34.615 10.90 2.57 0.00 0.86
2036 3547 6.632909 AGGGTAAATGTAATGCGCGTATATA 58.367 36.000 10.90 2.69 0.00 0.86
2037 3548 5.484715 AGGGTAAATGTAATGCGCGTATAT 58.515 37.500 10.90 3.69 0.00 0.86
2038 3549 4.885413 AGGGTAAATGTAATGCGCGTATA 58.115 39.130 10.90 0.00 0.00 1.47
2039 3550 3.735591 AGGGTAAATGTAATGCGCGTAT 58.264 40.909 8.43 5.70 0.00 3.06
2040 3551 3.182341 AGGGTAAATGTAATGCGCGTA 57.818 42.857 8.43 2.40 0.00 4.42
2041 3552 2.032680 AGGGTAAATGTAATGCGCGT 57.967 45.000 8.43 0.00 0.00 6.01
2042 3553 2.096819 ACAAGGGTAAATGTAATGCGCG 59.903 45.455 0.00 0.00 0.00 6.86
2043 3554 3.127895 TCACAAGGGTAAATGTAATGCGC 59.872 43.478 0.00 0.00 0.00 6.09
2044 3555 4.955925 TCACAAGGGTAAATGTAATGCG 57.044 40.909 0.00 0.00 0.00 4.73
2045 3556 5.092781 CGTTCACAAGGGTAAATGTAATGC 58.907 41.667 0.00 0.00 0.00 3.56
2046 3557 5.092781 GCGTTCACAAGGGTAAATGTAATG 58.907 41.667 0.00 0.00 0.00 1.90
2047 3558 4.762765 TGCGTTCACAAGGGTAAATGTAAT 59.237 37.500 0.00 0.00 0.00 1.89
2048 3559 4.023878 GTGCGTTCACAAGGGTAAATGTAA 60.024 41.667 0.00 0.00 42.66 2.41
2049 3560 3.499157 GTGCGTTCACAAGGGTAAATGTA 59.501 43.478 0.00 0.00 42.66 2.29
2050 3561 2.292292 GTGCGTTCACAAGGGTAAATGT 59.708 45.455 0.00 0.00 42.66 2.71
2051 3562 2.928694 GTGCGTTCACAAGGGTAAATG 58.071 47.619 0.00 0.00 42.66 2.32
2062 3573 0.450482 GTGTGCGTATGTGCGTTCAC 60.450 55.000 0.00 0.00 43.40 3.18
2063 3574 1.561717 GGTGTGCGTATGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
2064 3575 1.131826 GGTGTGCGTATGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
2065 3576 0.882927 AAGGTGTGCGTATGTGCGTT 60.883 50.000 0.00 0.00 37.81 4.84
2066 3577 0.038067 TAAGGTGTGCGTATGTGCGT 60.038 50.000 0.00 0.00 37.81 5.24
2067 3578 1.286501 ATAAGGTGTGCGTATGTGCG 58.713 50.000 0.00 0.00 37.81 5.34
2068 3579 2.675844 TGAATAAGGTGTGCGTATGTGC 59.324 45.455 0.00 0.00 0.00 4.57
2069 3580 6.423604 TCATATGAATAAGGTGTGCGTATGTG 59.576 38.462 1.98 0.00 32.82 3.21
2071 3864 6.646653 ACTCATATGAATAAGGTGTGCGTATG 59.353 38.462 6.90 0.00 32.46 2.39
2075 3868 5.117135 CGTACTCATATGAATAAGGTGTGCG 59.883 44.000 6.90 10.34 0.00 5.34
2076 3869 5.983720 ACGTACTCATATGAATAAGGTGTGC 59.016 40.000 6.90 2.39 0.00 4.57
2087 3880 3.688185 GCCTATCGGACGTACTCATATGA 59.312 47.826 5.07 5.07 0.00 2.15
2089 3882 3.690139 CAGCCTATCGGACGTACTCATAT 59.310 47.826 0.00 0.00 0.00 1.78
2096 3889 1.170919 GGCTCAGCCTATCGGACGTA 61.171 60.000 9.09 0.00 46.69 3.57
2098 3891 2.336809 GGCTCAGCCTATCGGACG 59.663 66.667 9.09 0.00 46.69 4.79
2108 3901 2.393271 AATCTATATGCCGGCTCAGC 57.607 50.000 29.70 0.00 0.00 4.26
2110 3903 4.021807 TCGTAAAATCTATATGCCGGCTCA 60.022 41.667 29.70 15.91 0.00 4.26
2113 3906 4.689345 ACTTCGTAAAATCTATATGCCGGC 59.311 41.667 22.73 22.73 0.00 6.13
2114 3907 5.924254 TGACTTCGTAAAATCTATATGCCGG 59.076 40.000 0.00 0.00 0.00 6.13
2140 3933 2.466982 CGACTACGAGGCGGCTACA 61.467 63.158 13.24 0.00 44.58 2.74
2172 3965 1.478916 TCGATGCGTATTCAGTGGGAA 59.521 47.619 0.00 0.00 40.46 3.97
2183 3976 2.159352 TCAAGAATTCCGTCGATGCGTA 60.159 45.455 0.65 0.00 0.00 4.42
2213 4006 5.665812 AGTCCTGGTGCTTGTATTTATCCTA 59.334 40.000 0.00 0.00 0.00 2.94
2251 4044 3.846588 AGGTGGACAGTGGTATTCTCAAT 59.153 43.478 0.00 0.00 0.00 2.57
2255 4048 5.030147 TGATTAGGTGGACAGTGGTATTCT 58.970 41.667 0.00 0.00 0.00 2.40
2257 4050 5.163195 GGATGATTAGGTGGACAGTGGTATT 60.163 44.000 0.00 0.00 0.00 1.89
2268 4061 5.039920 TCTGTGATTGGATGATTAGGTGG 57.960 43.478 0.00 0.00 0.00 4.61
2284 4077 8.150296 ACATGGATATTACGAATCAATCTGTGA 58.850 33.333 0.00 0.00 41.67 3.58
2290 4083 8.463930 AACCAACATGGATATTACGAATCAAT 57.536 30.769 2.85 0.00 40.96 2.57
2308 4101 7.014326 TGCACCAATTATTGTTACTAACCAACA 59.986 33.333 4.15 0.00 34.18 3.33
2362 4161 3.552294 GCTTCGTAGCATTTAGAGGTGAC 59.448 47.826 9.38 0.00 46.95 3.67
2399 4198 6.672266 AATCACTTACCCGATGACTATCAT 57.328 37.500 0.00 0.00 40.34 2.45
2400 4199 6.479972 AAATCACTTACCCGATGACTATCA 57.520 37.500 0.00 0.00 32.67 2.15
2454 4253 0.323451 GGCAAAGGAACCCCGATCTT 60.323 55.000 0.00 0.00 37.58 2.40
2459 4258 1.377333 GAGAGGCAAAGGAACCCCG 60.377 63.158 0.00 0.00 37.58 5.73
2466 4265 2.832931 CGTCAGTGAGAGGCAAAGG 58.167 57.895 0.00 0.00 0.00 3.11
2492 4291 1.032657 ATCAGAGACGAGGTGGACCG 61.033 60.000 0.00 0.00 42.08 4.79
2498 4297 0.616111 AAGGCCATCAGAGACGAGGT 60.616 55.000 5.01 0.00 0.00 3.85
2502 4301 0.390860 CCCTAAGGCCATCAGAGACG 59.609 60.000 5.01 0.00 0.00 4.18
2537 4336 4.113815 CGGCAAGGGCAGGGATCA 62.114 66.667 0.00 0.00 43.71 2.92
2555 4354 6.442564 ACTTCTAAAAACAAAAACCCTCCCTT 59.557 34.615 0.00 0.00 0.00 3.95
2557 4356 6.229936 ACTTCTAAAAACAAAAACCCTCCC 57.770 37.500 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.